Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 215 of 356
Found at i:70130561 original size:14 final size:14
Alignment explanation
Indices: 70130538--70130596 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 14
70130528 TATTTATCCC
*
70130538 TAAACACTAAAA-A
1 TAAACCCTAAAATA
70130551 TTAAACCCTAAAATA
1 -TAAACCCTAAAATA
* *
70130566 TACACCCTAAACTA
1 TAAACCCTAAAATA
*
70130580 TAAACCCTAAACTA
1 TAAACCCTAAAATA
70130594 TAA
1 TAA
70130597 TGATAATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 39 0.98
15 1 0.03
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAAATA
Found at i:70130731 original size:22 final size:22
Alignment explanation
Indices: 70130688--70130728 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
70130678 CACTAATTAA
* *
70130688 TTTAAACCCTATACTCCTAATC
1 TTTAAACCCTAAACTCATAATC
70130710 TTTAAACCCTAAAC-CATAA
1 TTTAAACCCTAAACTCATAA
70130729 ATCCTAAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.39, C:0.29, G:0.00, T:0.32
Consensus pattern (22 bp):
TTTAAACCCTAAACTCATAATC
Found at i:70131159 original size:21 final size:21
Alignment explanation
Indices: 70131133--70131217 Score: 71
Period size: 21 Copynumber: 3.7 Consensus size: 21
70131123 ACTCTTAAAC
* *
70131133 CTTAAACCCTAAACCGTATAT
1 CTTAAACCATAAACCATATAT
*
70131154 CTTAAACCATAGTTAACTCATAAACCT
1 CTTAAACCATA---AAC-CATATA--T
*
70131181 GCTTAAACCCTAAACCATATAT
1 -CTTAAACCATAAACCATATAT
70131203 CTTAAACCATAAACC
1 CTTAAACCATAAACC
70131218 TTAAACTGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
21 24 0.47
22 1 0.02
24 8 0.16
25 7 0.14
27 1 0.02
28 10 0.20
ACGTcount: A:0.41, C:0.28, G:0.04, T:0.27
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:70131202 original size:49 final size:46
Alignment explanation
Indices: 70131117--70131213 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 46
70131107 CTTCAAATAC
* *
70131117 TAGTTAACTCTTAAACCTTAAACCCTAAACCGTATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
70131163 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAA-C--CTTAAACCCTAAACCATATATCTTAAACCA
70131212 TA
1 TA
70131214 AACCTTAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
46 14 0.30
47 1 0.02
49 31 0.67
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:70131210 original size:14 final size:14
Alignment explanation
Indices: 70131184--70131223 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
70131174 TAAACCTGCT
*
70131184 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
70131198 TATATCTTAAACCA
1 TAAACCTTAAACCA
70131212 TAAACCTTAAAC
1 TAAACCTTAAAC
70131224 TGTAATGATT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:70137172 original size:26 final size:26
Alignment explanation
Indices: 70137134--70137215 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
70137124 TGATACAAAT
*
70137134 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70137160 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70137186 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70137212 TGAT
1 TGAT
70137216 GGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70146816 original size:20 final size:19
Alignment explanation
Indices: 70146791--70146840 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
70146781 TAACAATATT
70146791 TTATTAATTTAATATTAAA
1 TTATTAATTTAATATTAAA
70146810 GTTATT-ATCTTAATATTAAA
1 -TTATTAAT-TTAATATTAAA
70146830 -T-TTAATTTAAT
1 TTATTAATTTAAT
70146841 GTTTAGCTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 7 0.25
18 3 0.11
19 2 0.07
20 16 0.57
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
TTATTAATTTAATATTAAA
Found at i:70155420 original size:40 final size:39
Alignment explanation
Indices: 70155363--70155619 Score: 363
Period size: 40 Copynumber: 6.5 Consensus size: 39
70155353 GGATGATAAC
70155363 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70155402 CTAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70155442 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70155482 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70155522 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
70155562 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
70155602 CCGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
70155620 TACTTGGCGT
Statistics
Matches: 199, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
39 18 0.09
40 179 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70155575 original size:120 final size:120
Alignment explanation
Indices: 70155362--70155619 Score: 412
Period size: 120 Copynumber: 2.2 Consensus size: 120
70155352 TGGATGATAA
* *
70155362 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATCTAGGCTAAGTCCCGAAGGCATTGG
* *
70155427 TGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
66 TGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
*
70155482 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATCTAGGCTAAGTCCCGAAGGCATTGG
* *
70155547 TGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
66 TGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
* *
70155602 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70155620 TACTTGGCGT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
119 16 0.12
120 112 0.88
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATCTAGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
Found at i:70168721 original size:17 final size:17
Alignment explanation
Indices: 70168699--70168733 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
70168689 ATTACAAAAT
*
70168699 CAAATCTTATCAGATTA
1 CAAATCTTATAAGATTA
*
70168716 CAAATCTTCTAAGATTA
1 CAAATCTTATAAGATTA
70168733 C
1 C
70168734 TTTCCCTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.34
Consensus pattern (17 bp):
CAAATCTTATAAGATTA
Found at i:70171545 original size:52 final size:52
Alignment explanation
Indices: 70171467--70171569 Score: 170
Period size: 52 Copynumber: 2.0 Consensus size: 52
70171457 ATTTTAGGCC
* *
70171467 TAGTCAGAATAGTGCTTTTAGAACCACTGACCCGAGATCAGAGAAAATATTA
1 TAGTCAGAATAGTGCTTTCAGAACCACTCACCCGAGATCAGAGAAAATATTA
* *
70171519 TAGTCAGAATAGTGGTTTCAGAACCACTCACCCGAGGTCAGAGAAAATATT
1 TAGTCAGAATAGTGCTTTCAGAACCACTCACCCGAGATCAGAGAAAATATT
70171570 TTTGATATTA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.24
Consensus pattern (52 bp):
TAGTCAGAATAGTGCTTTCAGAACCACTCACCCGAGATCAGAGAAAATATTA
Found at i:70172471 original size:30 final size:30
Alignment explanation
Indices: 70172435--70172500 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
70172425 TACGGGTAGG
**
70172435 CACACGAGCGTGTGTCTATTCCGTGTGTGA
1 CACACGAGCGTGTGTCTAGGCCGTGTGTGA
70172465 CACACGAGCGTGTGTCTAGGCCGTGTGTGA
1 CACACGAGCGTGTGTCTAGGCCGTGTGTGA
70172495 CACACG
1 CACACG
70172501 GCCAGCCCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (30 bp):
CACACGAGCGTGTGTCTAGGCCGTGTGTGA
Found at i:70183235 original size:16 final size:18
Alignment explanation
Indices: 70183214--70183246 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
70183204 CATACGAGCT
70183214 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
70183230 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
70183247 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:70183824 original size:43 final size:42
Alignment explanation
Indices: 70183721--70183867 Score: 156
Period size: 41 Copynumber: 3.4 Consensus size: 42
70183711 TCAAAACACT
* * *
70183721 GGCATTTAGCCTGCTAGGTTTTAAACCCGAGT-TCA-TTCACC
1 GGCATTTAGCCTGCTAGGCTTGAAGCCCGA-TATCATTTCACC
*
70183762 GGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACC
1 GGCATTTAGCCTGCTAGGCTTGAAGCCCGATATCATTTCACC
* *
70183804 GGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATCTCACC
1 GGCATT-TAGCCTGCTAGGCTTGAA-GCCCG-ATA-TCATTTCACC
*
70183849 GGCATCATAGCCTGCTAGG
1 GGCAT-TTAGCCTGCTAGG
70183868 TTCAAAGGCC
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
40 1 0.01
41 29 0.32
42 12 0.13
43 16 0.18
44 5 0.05
45 27 0.30
46 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (42 bp):
GGCATTTAGCCTGCTAGGCTTGAAGCCCGATATCATTTCACC
Found at i:70183859 original size:45 final size:44
Alignment explanation
Indices: 70183753--70183884 Score: 155
Period size: 45 Copynumber: 3.0 Consensus size: 44
70183743 AAACCCGAGT
* * *
70183753 TCAT-TCACCGGCATTTCGCCTGCTAGGCTTGAA-GCCCG-ATA
1 TCATCTCACCGGCATATAGCCTGCTAGGCTCGAAGGCCCGAATA
*
70183794 TCATTTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
1 TCATCTCACCGGCA-TATAGCCTGCTAGGCTCGAAGGCCCGAATA
* *
70183839 GT-ATCTCACCGGCATCATAGCCTGCTAGGTTCAAAGGCCCGAATA
1 -TCATCTCACCGGCAT-ATAGCCTGCTAGGCTCGAAGGCCCGAATA
70183884 T
1 T
70183885 TACTGTATGA
Statistics
Matches: 79, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
41 4 0.05
42 9 0.11
43 17 0.22
44 7 0.09
45 41 0.52
46 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (44 bp):
TCATCTCACCGGCATATAGCCTGCTAGGCTCGAAGGCCCGAATA
Found at i:70189523 original size:14 final size:14
Alignment explanation
Indices: 70189478--70189523 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
70189468 TAAAAATTAC
70189478 AAAAATTAAATTCTT
1 AAAAATTAAATT-TT
* * *
70189493 AAAAATAAAAATAT
1 AAAAATTAAATTTT
70189507 AAAAATTAAATTTT
1 AAAAATTAAATTTT
70189521 AAA
1 AAA
70189524 TTAAAAAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAAATTAAATTTT
Found at i:70189533 original size:30 final size:29
Alignment explanation
Indices: 70189453--70189538 Score: 93
Period size: 30 Copynumber: 2.9 Consensus size: 29
70189443 ACAATTAAAC
** * *
70189453 TTAAATTTTAAAATCTAAAAATTACAAAAA
1 TTAAATTTT-AAATAAAAAAAATATAAAAA
*
70189483 TTAAATTCTTAAA-AATAAAAATATAAAAA
1 TTAAATT-TTAAATAAAAAAAATATAAAAA
70189512 TTAAATTTTAAATTAAAAAAAATATAA
1 TTAAATTTTAAA-TAAAAAAAATATAA
70189539 TTAACCCTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 5 0.11
29 18 0.38
30 22 0.47
31 2 0.04
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (29 bp):
TTAAATTTTAAATAAAAAAAATATAAAAA
Found at i:70190089 original size:68 final size:67
Alignment explanation
Indices: 70189897--70190093 Score: 313
Period size: 67 Copynumber: 2.9 Consensus size: 67
70189887 TAAGTTAAAT
* * * *
70189897 TACTTACTAAAACATTTATTCTGAAATGCATATACTTAATTTAATAAAACTTTTCATTGTTTCAA
1 TACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
70189962 AC
66 AC
*
70189964 TACTTACTAAAAGATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
1 TACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
70190029 AC
66 AC
** *
70190031 TACTTACTAAAACATTTATTCAAAAAATGTATAAACTTAATTTAATAACACATCTCATTGTTT
1 TACTTACTAAAACATTTATTC-TGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
70190094 TTGTTTTTGT
Statistics
Matches: 120, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
67 82 0.68
68 38 0.32
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.40
Consensus pattern (67 bp):
TACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
AC
Found at i:70190568 original size:67 final size:67
Alignment explanation
Indices: 70190452--70190716 Score: 363
Period size: 67 Copynumber: 4.0 Consensus size: 67
70190442 GATCCCGAAG
* *
70190452 TCAAACTACTTACTAAAACCCTTAGTT-GGAAATGTATAAA-TCTAATTTAATAAAACATCTCAT
1 TCAAACTACTTACTAAAACCTTTA-TTCTGAAATGTATAAACT-TAATTTAATAAAACATCTCAT
70190515 TATT
64 TATT
* * *
70190519 CCAAACTACTTACTAAAACCTTTATTCTGAAATGTATAAACTTATTTTAATAAATCATCTCATTA
1 TCAAACTACTTACTAAAACCTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTA
70190584 TT
66 TT
* * * * *
70190586 TTAAACTACTTACTAAAACATTTATCCTGAAATGTATAAACTTAATTTAATAAAACATCTCAGTG
1 TCAAACTACTTACTAAAACCTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTA
70190651 TT
66 TT
* * * * *
70190653 TAAAACTACTTACTAAAATCTTTATTCAGAAATGTATAAATTTAATTTAATAACACATCTCATT
1 TCAAACTACTTACTAAAACCTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATT
70190717 GTTTTTGTTT
Statistics
Matches: 175, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
66 2 0.01
67 172 0.98
68 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.38
Consensus pattern (67 bp):
TCAAACTACTTACTAAAACCTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTA
TT
Found at i:70191174 original size:67 final size:66
Alignment explanation
Indices: 70191090--70191433 Score: 467
Period size: 67 Copynumber: 5.1 Consensus size: 66
70191080 GATCTCAAAG
** * * *
70191090 TCAAACTACTTACTAAAACCCATATTTGGAAATATATAAATTTAATTTAATAAAATATCTCATTG
1 TCAAACTACTTACTAAAACCTTTATTT-GAAATGTATAAACTTAATTTAATAAAACATCTCATTG
70191155 TT
65 TT
* * * *
70191157 TCAAACTATTTAGTAAAACCTTTATTCTAAAATGTATAAACTTAATTTAATAAAACATGTCATTG
1 TCAAACTACTTACTAAAACCTTTATT-TGAAATGTATAAACTTAATTTAATAAAACATCTCATTG
70191222 TT
65 TT
*
70191224 TCAAACTACTTACTAAAACTTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTG
1 TCAAACTACTTACTAAAACCTTTATT-TGAAATGTATAAACTTAATTTAATAAAACATCTCATTG
70191289 TT
65 TT
* *
70191291 TCAAACTACTTACTAAAACCCTTATTCAT-AATTGTATAAA-TTCAATTTAATAAAACATCTCAT
1 TCAAACTACTTACTAAAACCTTTATT--TGAAATGTATAAACTT-AATTTAATAAAACATCTCAT
70191354 TGTT
63 TGTT
* * *
70191358 TCAAACTACTTACTAAAACCTTTATTCCGAAATGTATAAACTTAATTTAAAAAAAACATATCATT
1 TCAAACTACTTACTAAAACCTTTATT-TGAAATGTATAAACTTAATTT-AATAAAACATCTCATT
70191423 GTT
64 GTT
70191426 TCAAACTA
1 TCAAACTA
70191434 TTGATGTGGA
Statistics
Matches: 247, Mismatches: 24, Indels: 11
0.88 0.09 0.04
Matches are distributed among these distances:
66 2 0.01
67 216 0.87
68 29 0.12
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.38
Consensus pattern (66 bp):
TCAAACTACTTACTAAAACCTTTATTTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGT
T
Found at i:70191176 original size:638 final size:623
Alignment explanation
Indices: 70189897--70191358 Score: 2101
Period size: 638 Copynumber: 2.3 Consensus size: 623
70189887 TAAGTTAAAT
* * * * *
70189897 TACTTACTAAAACATTTATTCTGAAATGCATATACTTAATTTAATAAAACTTTTCATTGTTTCAA
1 TACTTACTAAAACCTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
*
70189962 ACTACTTACTAAAAGATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTC
66 ACTACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTC
*
70190027 AAACTACTTACTAAAACATTTATTCAAAAAATGTATAAACTTAATTTAATAACACATCTCATTGT
131 AAACTACTTACTAAAAC-TTTATTC-AAAAATGTATAAATTTAATTTAATAACACATCTCATTGT
*
70190092 TTTTGTTTTTGTGTATATGCTCATTTAGTATTGACAGCAAATCTCTTTCCACATTGCACTCAATT
194 TTTTGTTTCTGTG-ATATGCTCATTTAGTATTGACAGCAAATCTCTTTCCACATTGCACTCAATT
* * ** * *
70190157 TTCATATTTCAGGCGCTGGTTGAGTGAAAGAATCGAAAAAATTTATCTTTTTTATAGAAGTATAC
258 TTCATATTTCAAGCGCTGGTTGAGTGAAAAAAAAGAAAAAATTCATCTTTTTTAGAGAAGTATAC
70190222 CAATTGTCACCATCAAACTTATCACCTAACTGAAAGTACCATGTTCAGCTTATTACTTGAATACA
323 CAATTGTCACCATCAAACTTATCACCTAACTGAAAGTACCATGTTCAGCTTATTACTTGAATACA
* * * *
70190287 CAACAAAATATTTGCAAAGCCCTGTCAAATTATACAAAAAGGCTTTCCTATTTCAAGATATCTTT
388 CAACAAAATATTTGCAAAGCCCTATCAAATCATACAAAAAAGCTTTCCTATTTCAAGAGATCTTT
70190352 CCATGCCAATATGGGTTATTCGAAAACAAATAGAGAATAGTTATTACTTTAAAAAAAACAACATA
453 CCATGCCAATATGGGTTATTCGAAAACAAATAGAGAATAGTTATTACTTT--AAAAAACAACATA
* * * *
70190417 TATTGAAAAGGAAGGTAATGGAGAGGATCCCGAAGTCAAACTACTTACTAAAACCCTTAGTTGGA
516 TATTGAAAAGGAAAGTAAGGGAGAGGATCCCAAAGTCAAACTACTTACTAAAACCCATAGTTGGA
*
70190482 AATGTATAAATCTAATTTAATAAAACATCTCATTATTCCAAAC
581 AATATATAAATCTAATTTAATAAAACATCTCATTATTCCAAAC
* * * *
70190525 TACTTACTAAAACCTTTATTCTGAAATGTATAAACTTATTTTAATAAATCATCTCATTATTTTAA
1 TACTTACTAAAACCTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
* * *
70190590 ACTACTTACTAAAACATTTATCCTGAAATGTATAAACTTAATTTAATAAAACATCTCAGTGTTTA
66 ACTACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTC
*
70190655 AAACTACTTACTAAAATCTTTATTCAGAAATGTATAAATTTAATTTAATAACACATCTCATTGTT
131 AAACTACTTACTAAAA-CTTTATTCAAAAATGTATAAATTTAATTTAATAACACATCTCATTGTT
*
70190720 TTTGTTTCTGTG-TATGC-CTATTTAGTATTGACAGCAAATCTCTTTTCACATTGCACTCAATTT
195 TTTGTTTCTGTGATATGCTC-ATTTAGTATTGACAGCAAATCTCTTTCCACATTGCACTCAATTT
* **
70190783 TCCTATTTCAAGCGCTGGTTGAGTGAAAAAAAAAGAAAAAGAAAATTAGCATCTTTTTTAGAGGG
259 TCATATTTCAAGCGCTGGTTGAGTG-AAAAAAAAG---AA-AAAATT--CATCTTTTTTAGAGAA
* * **
70190848 GTATACCAATTGTCACCATCAAACTTATCACCTAAACTTAAGGTACCATGTTTGGCTTATATATT
317 GTATACCAATTGTCACCATCAAACTTATCACCT-AACTGAAAGTACCATGTTCAGC---T-TATT
* *
70190913 ACTTGGATACACAAAATAAAATATTTGCAAAGTCCC-ATCAAATCATACAAAAAAAAAAAGCTTT
377 ACTTGAATACAC--AACAAAATATTTGCAAAG-CCCTATCAAATCATAC-----AAAAAAGCTTT
*
70190977 CCTATTTCAAGAGATCTTTCCATGCCAATATGGGTTATTC-AAAACAAATAGAGAATA-TTTTTA
434 CCTATTTCAAGAGATCTTTCCATGCCAATATGGGTTATTCGAAAACAAATAGAGAATAGTTATTA
*
70191040 CTTT-AAAAA-AACATATATTGAAAAGGAAAGTAAGGGAGAGGATCTCAAAGTCAAACTACTTAC
499 CTTTAAAAAACAACATATATTGAAAAGGAAAGTAAGGGAGAGGATCCCAAAGTCAAACTACTTAC
* * * * *
70191103 TAAAACCCATATTTGGAAATATATAAATTTAATTTAATAAAATATCTCATTGTTTCAAAC
564 TAAAACCCATAGTTGGAAATATATAAATCTAATTTAATAAAACATCTCATTATTCCAAAC
* * * *
70191163 TATTTAGTAAAACCTTTATTCTAAAATGTATAAACTTAATTTAATAAAACATGTCATTGTTTCAA
1 TACTTACTAAAACCTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
*
70191228 ACTACTTACTAAAACTTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTC
66 ACTACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTC
* * * * *
70191293 AAACTACTTACTAAAACCCTTATTCATAATTGTATAAATTCAATTTAATAAAACATCTCATTGTT
131 AAACTACTTACTAAAA-CTTTATTCAAAAATGTATAAATTTAATTTAATAACACATCTCATTGTT
70191358 T
195 T
70191359 CAAACTACTT
Statistics
Matches: 746, Mismatches: 66, Indels: 34
0.88 0.08 0.04
Matches are distributed among these distances:
624 1 0.00
625 71 0.10
626 6 0.01
627 49 0.07
628 140 0.19
629 3 0.00
630 6 0.01
632 45 0.06
633 18 0.02
636 1 0.00
637 15 0.02
638 281 0.38
639 32 0.04
640 3 0.00
642 9 0.01
643 17 0.02
644 49 0.07
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.36
Consensus pattern (623 bp):
TACTTACTAAAACCTTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTCAA
ACTACTTACTAAAACATTTATTCTGAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTTC
AAACTACTTACTAAAACTTTATTCAAAAATGTATAAATTTAATTTAATAACACATCTCATTGTTT
TTGTTTCTGTGATATGCTCATTTAGTATTGACAGCAAATCTCTTTCCACATTGCACTCAATTTTC
ATATTTCAAGCGCTGGTTGAGTGAAAAAAAAGAAAAAATTCATCTTTTTTAGAGAAGTATACCAA
TTGTCACCATCAAACTTATCACCTAACTGAAAGTACCATGTTCAGCTTATTACTTGAATACACAA
CAAAATATTTGCAAAGCCCTATCAAATCATACAAAAAAGCTTTCCTATTTCAAGAGATCTTTCCA
TGCCAATATGGGTTATTCGAAAACAAATAGAGAATAGTTATTACTTTAAAAAACAACATATATTG
AAAAGGAAAGTAAGGGAGAGGATCCCAAAGTCAAACTACTTACTAAAACCCATAGTTGGAAATAT
ATAAATCTAATTTAATAAAACATCTCATTATTCCAAAC
Found at i:70191626 original size:12 final size:12
Alignment explanation
Indices: 70191609--70191639 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
70191599 TAAAATTTAA
70191609 GTTAGGAATTCT
1 GTTAGGAATTCT
70191621 GTTAGGAATTCT
1 GTTAGGAATTCT
*
70191633 ATTAGGA
1 GTTAGGA
70191640 CTCTTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (12 bp):
GTTAGGAATTCT
Found at i:70196606 original size:67 final size:67
Alignment explanation
Indices: 70196498--70196630 Score: 248
Period size: 67 Copynumber: 2.0 Consensus size: 67
70196488 GGTGTATAAC
*
70196498 AACTACTTACTAAAACCTTTATTCCAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
1 AACTACTTACTAAAACATTTATTCCAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
70196563 TA
66 TA
*
70196565 AACTACTTACTAAAACATTTATTCGAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
1 AACTACTTACTAAAACATTTATTCCAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
70196630 T
66 T
70196631 TTTTTTTTGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.39
Consensus pattern (67 bp):
AACTACTTACTAAAACATTTATTCCAAAATGTATAAACTTAATTTAATAAAACATCTCATTGTTT
TA
Found at i:70196715 original size:21 final size:21
Alignment explanation
Indices: 70196689--70196731 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
70196679 CACATTGCAC
70196689 TCAATTTCTCTGTTTCAGACA
1 TCAATTTCTCTGTTTCAGACA
*
70196710 TCAATTTCTTTGTTTCAGACA
1 TCAATTTCTCTGTTTCAGACA
70196731 T
1 T
70196732 TGGTTGGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.09, T:0.47
Consensus pattern (21 bp):
TCAATTTCTCTGTTTCAGACA
Found at i:70196898 original size:3 final size:3
Alignment explanation
Indices: 70196890--70196914 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
70196880 CTGTCAAATT
70196890 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
70196915 ACCTTTCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:70207731 original size:30 final size:30
Alignment explanation
Indices: 70207695--70207754 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
70207685 TTCTCGAGCC
70207695 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
70207725 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
70207755 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:70208232 original size:47 final size:47
Alignment explanation
Indices: 70208178--70208351 Score: 205
Period size: 47 Copynumber: 3.7 Consensus size: 47
70208168 TTGAACATCT
70208178 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATGTCC
* * *
70208225 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--ATG--TCC
* * *
70208272 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCG-AATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATGTCC
* *
70208318 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70208352 GCGGGTTACG
Statistics
Matches: 108, Mismatches: 11, Indels: 17
0.79 0.08 0.12
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 2 0.02
46 35 0.32
47 55 0.51
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATGTCC
Found at i:70214197 original size:17 final size:17
Alignment explanation
Indices: 70214175--70214210 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
70214165 AAGATCCATG
70214175 ATGTGTTCCACGTATCT
1 ATGTGTTCCACGTATCT
70214192 ATGTGTTCCACGTATCT
1 ATGTGTTCCACGTATCT
70214209 AT
1 AT
70214211 ATCACGTCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (17 bp):
ATGTGTTCCACGTATCT
Found at i:70215327 original size:30 final size:30
Alignment explanation
Indices: 70215291--70215350 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
70215281 TTCCCGAGAC
70215291 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
70215321 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
70215351 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:70227335 original size:14 final size:14
Alignment explanation
Indices: 70227316--70227345 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70227306 TATCTTATAA
70227316 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
70227330 ATATGCGTTAATCT
1 ATATGCGTGAATCT
70227344 AT
1 AT
70227346 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:70230769 original size:17 final size:17
Alignment explanation
Indices: 70230747--70230779 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70230737 CATTTTTGTT
70230747 CTCTTGATGCC-ATTTCC
1 CTCTTG-TGCCGATTTCC
70230764 CTCTTGTGCCGATTTC
1 CTCTTGTGCCGATTTC
70230780 TTTTGGTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.33, G:0.15, T:0.42
Consensus pattern (17 bp):
CTCTTGTGCCGATTTCC
Found at i:70238537 original size:17 final size:17
Alignment explanation
Indices: 70238515--70238547 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70238505 CATTTTTGTT
70238515 CTCTTGATGCC-ATTTCC
1 CTCTTG-TGCCGATTTCC
70238532 CTCTTGTGCCGATTTC
1 CTCTTGTGCCGATTTC
70238548 TTTTGGTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.33, G:0.15, T:0.42
Consensus pattern (17 bp):
CTCTTGTGCCGATTTCC
Found at i:70245186 original size:24 final size:25
Alignment explanation
Indices: 70245150--70245211 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 25
70245140 AAAACCTAAT
*
70245150 AAAAATAAGCTTAAAGA-AAAATAA
1 AAAAATAAGCTTAAACATAAAATAA
70245174 AAAAAT-AGTCTTAAACATAAAATAA
1 AAAAATAAG-CTTAAACATAAAATAA
70245199 TAAATAA-AAGCTT
1 -AAA-AATAAGCTT
70245212 TTAAACATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
23 2 0.06
24 13 0.41
25 7 0.22
26 6 0.19
27 4 0.12
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (25 bp):
AAAAATAAGCTTAAACATAAAATAA
Found at i:70249988 original size:19 final size:19
Alignment explanation
Indices: 70249951--70249988 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
70249941 ACCTGTCAGA
*
70249951 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
70249970 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
70249989 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:70257386 original size:5 final size:5
Alignment explanation
Indices: 70257376--70257455 Score: 60
Period size: 5 Copynumber: 15.8 Consensus size: 5
70257366 AATTTCTCCT
*
70257376 TTTTC TTTTC TTTTC TTTTC TTCTT- TCTTTC -TTTC TATTTC GTTTC
1 TTTTC TTTTC TTTTC TTTTC TT-TTC T-TTTC TTTTC T-TTTC TTTTC
* *
70257422 TTCTC TGTTTC TTTTTC TTGT- TTTTC -TTTC TTTT
1 TTTTC T-TTTC -TTTTC TTTTC TTTTC TTTTC TTTT
70257456 ATTTGTTCTT
Statistics
Matches: 60, Mismatches: 6, Indels: 18
0.71 0.07 0.21
Matches are distributed among these distances:
4 11 0.18
5 34 0.57
6 14 0.23
7 1 0.02
ACGTcount: A:0.01, C:0.20, G:0.04, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:70257406 original size:26 final size:26
Alignment explanation
Indices: 70257377--70257454 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
70257367 ATTTCTCCTT
70257377 TTTCTTTTCTTTTCTTTTCTTCTTTC
1 TTTCTTTTCTTTTCTTTTCTTCTTTC
* * *
70257403 TTTC-TTTCTATTTCGTTTCTTCTCTG
1 TTTCTTTTCT-TTTCTTTTCTTCTTTC
*
70257429 TTTCTTTTTCTTGT-TTTTCTTTCTTT
1 TTTC-TTTTCTTTTCTTTTC-TTCTTT
70257455 TATTTGTTCT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
25 5 0.12
26 25 0.60
27 7 0.17
28 5 0.12
ACGTcount: A:0.01, C:0.21, G:0.04, T:0.74
Consensus pattern (26 bp):
TTTCTTTTCTTTTCTTTTCTTCTTTC
Found at i:70257477 original size:21 final size:19
Alignment explanation
Indices: 70257429--70257480 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
70257419 TTCTTCTCTG
*
70257429 TTTCTTTT-TCTTGTTTTTC
1 TTTCTTTTAT-TTGTTTTTA
70257448 TTTCTTTTATTTGTTCTTTA
1 TTTCTTTTATTTGTT-TTTA
70257468 TTTCATTTTATTT
1 TTTC-TTTTATTT
70257481 CTTTCATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 13 0.45
20 8 0.28
21 8 0.28
ACGTcount: A:0.08, C:0.12, G:0.04, T:0.77
Consensus pattern (19 bp):
TTTCTTTTATTTGTTTTTA
Found at i:70257631 original size:3 final size:3
Alignment explanation
Indices: 70257623--70257647 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
70257613 TTGATAAAAT
70257623 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
70257648 GTAAATATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:70260900 original size:42 final size:41
Alignment explanation
Indices: 70260787--70260900 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 41
70260777 TACCATACCA
* *
70260787 ATGCCATATCCCAGATATGGTCTTACACCGGATCTCAATTTG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATCTCAATTCG
* * *
70260829 ATGCCAATAGCCGAGCTATGGTCTTACACGAAATCTC-ATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACG-AATCTCAAT-TCG
70260872 ATGCCATATCCCAGATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
70260901 TAGACTCAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 30 0.49
43 31 0.51
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTCAATTCG
Found at i:70262738 original size:16 final size:16
Alignment explanation
Indices: 70262717--70262747 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70262707 TATGATATAG
70262717 AAATATGACATGAAAA
1 AAATATGACATGAAAA
*
70262733 AAATATTACATGAAA
1 AAATATGACATGAAA
70262748 TATAAGAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.06, G:0.10, T:0.23
Consensus pattern (16 bp):
AAATATGACATGAAAA
Found at i:70275825 original size:73 final size:74
Alignment explanation
Indices: 70275728--70275869 Score: 261
Period size: 73 Copynumber: 1.9 Consensus size: 74
70275718 GTCTGACTTG
70275728 TTTTTTTTTAAATACAATACATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGTG
1 TTTTTTTTTAAATACAATACATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGTG
70275793 TTAAGTTGT
66 TTAAGTTGT
70275802 TTTTTTTTTAAA-A-AATACAATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGT
1 TTTTTTTTTAAATACAATAC-ATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGT
70275865 GTTAA
65 GTTAA
70275870 TTCCATATTT
Statistics
Matches: 67, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
72 5 0.07
73 50 0.75
74 12 0.18
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (74 bp):
TTTTTTTTTAAATACAATACATACATATATATTAATAGTAATTCGTCATTTTTGAGCTTAAAGTG
TTAAGTTGT
Found at i:70285408 original size:46 final size:46
Alignment explanation
Indices: 70285358--70285533 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
70285348 TGATTGAGCA
70285358 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
70285404 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
*
70285449 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
70285497 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70285534 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.05
45 5 0.04
46 61 0.54
47 29 0.26
48 3 0.03
50 5 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:70285514 original size:93 final size:93
Alignment explanation
Indices: 70285355--70285526 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
70285345 GGATGATTGA
*
70285355 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
70285420 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
70285448 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
70285512 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
70285527 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70292978 original size:46 final size:46
Alignment explanation
Indices: 70292928--70293103 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
70292918 TGATTGAGCA
70292928 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70292974 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70293019 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70293067 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70293104 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70293084 original size:93 final size:93
Alignment explanation
Indices: 70292925--70293096 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
70292915 GGATGATTGA
*
70292925 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
70292990 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
70293018 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
70293082 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
70293097 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70295500 original size:46 final size:44
Alignment explanation
Indices: 70295406--70295625 Score: 174
Period size: 46 Copynumber: 4.8 Consensus size: 44
70295396 GTAAGTTGCT
* * * * *
70295406 GATGCCATATCCCAGACATGGTCTTACACTGACACATTTCATAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCTCATGGCC
**
70295452 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGGGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-T-CATCTCATGGCC
* * *
70295498 GATGCATGTCCCAGACATGTCTTACATTAGCGCTCGTCTCAAT-GCT
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCTCATCTC-ATGGCC
* * *
70295544 GATGCCATGTCCCAGATATGGTCTTGCACTGGCTC-TCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATC-TCA--TGGCC
* * *
70295592 AATGCATGTCCTAGACATGTCTTACACTAGCTCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCA
70295626 CACAAATGAC
Statistics
Matches: 140, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.09
45 16 0.11
46 68 0.49
47 29 0.21
48 15 0.11
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCATCTCATGGCC
Found at i:70295575 original size:94 final size:92
Alignment explanation
Indices: 70295452--70295622 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 92
70295442 TTTCATAGCC
* *
70295452 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGGGGCCGATGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GGGGCCAATGCATGTCCCAGACA
*
70295515 TGTCTTACATTAGCGCTCGTCTCAATGCT
64 TGTCTTACACTAGCGCTCGTCTCAATGCT
* * * *
70295544 GATGCCATGTCCCAGATATGGTCTTGCACTGGCTCTCATAATGTGGCCAATGCATGTCCTAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGGGGCCAATGCATGTCCCAGACA
70295609 TGTCTTACACTAGC
64 TGTCTTACACTAGC
70295623 TCACACAAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 49 0.72
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGGGGCCAATGCATGTCCCAGACATG
TCTTACACTAGCGCTCGTCTCAATGCT
Found at i:70307012 original size:31 final size:31
Alignment explanation
Indices: 70306944--70307005 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
70306934 GTCTAGGTGG
* **
70306944 ATTTTTCCTTAAGTATTGTCTTAAGTCAATC
1 ATTTTCCCTTAAGTATTGTCTTAACCCAATC
*
70306975 GATTTTCCCTTAGGTATTGTCTTAACCCAAT
1 -ATTTTCCCTTAAGTATTGTCTTAACCCAAT
70307006 TCTTTTCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.45
Consensus pattern (31 bp):
ATTTTCCCTTAAGTATTGTCTTAACCCAATC
Found at i:70311578 original size:44 final size:44
Alignment explanation
Indices: 70311515--70311603 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
70311505 GGATGATGTT
70311515 TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
1 TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
70311559 TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
1 TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
70311603 T
1 T
70311604 GTAAATTTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.42
Consensus pattern (44 bp):
TCCATTTATTTCTATTGAAAATAGACTCATTAATAATTTAAACA
Found at i:70321193 original size:12 final size:12
Alignment explanation
Indices: 70321161--70321195 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
70321151 TTGGTTGATA
* *
70321161 GAGAGATTAGAG
1 GAGAGATTTGGG
70321173 GAGAGATTTGGG
1 GAGAGATTTGGG
70321185 GAGAGATTTGG
1 GAGAGATTTGG
70321196 AGAGTGGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (12 bp):
GAGAGATTTGGG
Found at i:70324949 original size:22 final size:22
Alignment explanation
Indices: 70324904--70324949 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
70324894 ACAAGTTATC
*
70324904 TTAATTTAAAACAAATATTTAA
1 TTAATTTAAAACAAATATTCAA
*
70324926 TTAATTTATAAACATATA-TCAA
1 TTAATTTA-AAACAAATATTCAA
70324948 TT
1 TT
70324950 CATAGAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (22 bp):
TTAATTTAAAACAAATATTCAA
Found at i:70329250 original size:28 final size:28
Alignment explanation
Indices: 70329218--70329272 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
70329208 ATTGGTTAAG
70329218 TTGGATGTCTTCAAAATTGTTATAAAAA
1 TTGGATGTCTTCAAAATTGTTATAAAAA
*
70329246 TTGGATGTCTTTAAAATTGTTATAAAA
1 TTGGATGTCTTCAAAATTGTTATAAAA
70329273 GTTGAGTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (28 bp):
TTGGATGTCTTCAAAATTGTTATAAAAA
Found at i:70329716 original size:52 final size:51
Alignment explanation
Indices: 70329606--70329782 Score: 225
Period size: 52 Copynumber: 3.5 Consensus size: 51
70329596 ACTAGTGACT
* * * *
70329606 CAAGTGTGGTACTATATGAAGACCACTTTGAGAAG-GGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
*
70329655 CAAGTGTGGTACTGTGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* * *
70329707 CAATTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
* *
70329758 CAAGGGTGGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
70329783 TCGGGTATCC
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 31 0.28
50 2 0.02
51 39 0.35
52 40 0.36
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:70329771 original size:51 final size:51
Alignment explanation
Indices: 70329601--70329782 Score: 203
Period size: 51 Copynumber: 3.6 Consensus size: 51
70329591 TTGTCACTAG
* * *
70329601 TGACT-CAAGTGTGGTACTATATGAAGACCACTTTGAGAAG--GGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGG-TAGCTT
* * * *
70329650 GGTC-ACAAGTGTGGTACTGTGTGAAGGCCACTTTGTGAAGAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTT
* *
70329701 TG-GTCACAATTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTT
1 TGACT-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTT
* *
70329752 TGACTACAAGGGTGGTACTATGTGCAGGCCA
1 TGACTACAAGTGTGGTACTATGTGAAGGCCA
70329783 TCGGGTATCC
Statistics
Matches: 110, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
49 33 0.30
51 41 0.37
52 36 0.33
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTT
Found at i:70335652 original size:40 final size:40
Alignment explanation
Indices: 70335608--70335693 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
70335598 AAAGACATCG
*
70335608 AAGTGTTTAAAAGGGCAAATTTGTGCAAATAGGGACACCA
1 AAGTGTTTAAAAGGGCAAAGTTGTGCAAATAGGGACACCA
** *
70335648 AAGTGTTTGTAAGGGCACAGTTGTGCAAATAGGGACACCA
1 AAGTGTTTAAAAGGGCAAAGTTGTGCAAATAGGGACACCA
70335688 AAGTGT
1 AAGTGT
70335694 ATATAGGGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (40 bp):
AAGTGTTTAAAAGGGCAAAGTTGTGCAAATAGGGACACCA
Found at i:70335713 original size:40 final size:40
Alignment explanation
Indices: 70335629--70335715 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
70335619 AGGGCAAATT
* * *
70335629 TGTGCAAATAGGGACACCAAAGTGTTTGTAAGGGCACAGT
1 TGTGCAAATAGGGACACCAAAGTGTATATAAGGGCACAGA
* * *
70335669 TGTGCAAATAGGGACACCAAAGTGTATATAGGGGTACTGA
1 TGTGCAAATAGGGACACCAAAGTGTATATAAGGGCACAGA
70335709 TGTGCAA
1 TGTGCAA
70335716 TTAAGGCACT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (40 bp):
TGTGCAAATAGGGACACCAAAGTGTATATAAGGGCACAGA
Found at i:70340887 original size:40 final size:40
Alignment explanation
Indices: 70340839--70341065 Score: 391
Period size: 40 Copynumber: 5.7 Consensus size: 40
70340829 GCAAACACAT
* *
70340839 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
70340879 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* **
70340919 TTGCCTTCGGGCCACAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
70340959 TTGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
70340999 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
70341039 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
70341066 ATCCAATGCT
Statistics
Matches: 175, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:70352216 original size:40 final size:40
Alignment explanation
Indices: 70352167--70352246 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
70352157 TCATAAAAGA
* * *
70352167 AACCGTTACTTACACGAAATGGAATAGCAAACAAATCAAT
1 AACCATTACTTACACAAAATGGAATAGCAAAAAAATCAAT
*
70352207 AACCATTACTTACACAAAATGGAGTAGCAAAAAAATCAAT
1 AACCATTACTTACACAAAATGGAATAGCAAAAAAATCAAT
70352247 CATCAAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.50, C:0.19, G:0.11, T:0.20
Consensus pattern (40 bp):
AACCATTACTTACACAAAATGGAATAGCAAAAAAATCAAT
Found at i:70353569 original size:19 final size:19
Alignment explanation
Indices: 70353545--70353584 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
70353535 ATACCTCACT
70353545 ATAGCTATTAATGAAATAA
1 ATAGCTATTAATGAAATAA
*
70353564 ATAGCTATTATTGAAATAA
1 ATAGCTATTAATGAAATAA
70353583 AT
1 AT
70353585 TCATGTATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35
Consensus pattern (19 bp):
ATAGCTATTAATGAAATAA
Found at i:70359137 original size:8 final size:9
Alignment explanation
Indices: 70359119--70359145 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
70359109 TTGTGTGTTC
70359119 TTTATTTTT
1 TTTATTTTT
70359128 TTTATTTTT
1 TTTATTTTT
70359137 TTTATTTTT
1 TTTATTTTT
70359146 CACAGGAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTATTTTT
Found at i:70362646 original size:40 final size:40
Alignment explanation
Indices: 70362543--70362688 Score: 179
Period size: 40 Copynumber: 3.7 Consensus size: 40
70362533 TGAGGAATTG
* * * *
70362543 TATCCGAGCTTAAAGACCCACAAGCTATATACTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
*
70362583 TATCTGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
* * * *
70362623 TATCCGGGCTTAAAGACCTGCAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATGT
*
70362663 TATCCGGGC-TAGAGACCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
70362689 CGAGCTGGTA
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.16
40 77 0.84
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
Found at i:70365633 original size:26 final size:26
Alignment explanation
Indices: 70365597--70365646 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
70365587 CAATGGCTAG
70365597 TTTGAACAACTGATTCTATTAACTAA
1 TTTGAACAACTGATTCTATTAACTAA
* *
70365623 TTTGACCAACTGATTTTATTAACT
1 TTTGAACAACTGATTCTATTAACT
70365647 GTTTATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (26 bp):
TTTGAACAACTGATTCTATTAACTAA
Found at i:70372563 original size:42 final size:42
Alignment explanation
Indices: 70372504--70372667 Score: 233
Period size: 42 Copynumber: 3.9 Consensus size: 42
70372494 TTAGGGTTAC
*
70372504 TGAGATTATGTGTAAGACCATATCTGGGATATGGCATCTATA
1 TGAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATA
*
70372546 TGAGATT-TCGTGTAAGACCATATTTGGGATATGGCATCGATA
1 TGAGATTAT-GTGTAAGACCATATCTGGGATATGGCATCGATA
* *
70372588 TGAGACTT-TGTGTAAGACCATAACTGGGCTATTGGCATCGATA
1 TGAGA-TTATGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
70372631 CGAGATTATATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTATGTGTAAGACCATATCTGGGATATGGCAT
70372668 TGGTACGGTA
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
41 1 0.01
42 70 0.64
43 38 0.35
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (42 bp):
TGAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:70372651 original size:85 final size:84
Alignment explanation
Indices: 70372504--70372667 Score: 233
Period size: 85 Copynumber: 1.9 Consensus size: 84
70372494 TTAGGGTTAC
* * * *
70372504 TGAGATTATGTGTAAGACCATATCTGGGATATGGCATCTATATGAGATTTCGTGTAAGACCATAT
1 TGAGATTATGTGTAAGACCATAACTGGGATATGGCATCGATACGAGATTTCATGTAAGACCATAT
*
70372569 TTGGGATATGGCATCGATA
66 CTGGGATATGGCATCGATA
*
70372588 TGAGACTT-TGTGTAAGACCATAACTGGGCTATTGGCATCGATACGAGATTAT-ATGTAAGACCA
1 TGAGA-TTATGTGTAAGACCATAACTGGGATA-TGGCATCGATACGAGATT-TCATGTAAGACCA
70372651 TATCTGGGATATGGCAT
63 TATCTGGGATATGGCAT
70372668 TGGTACGGTA
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
84 26 0.37
85 44 0.62
86 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (84 bp):
TGAGATTATGTGTAAGACCATAACTGGGATATGGCATCGATACGAGATTTCATGTAAGACCATAT
CTGGGATATGGCATCGATA
Found at i:70373167 original size:15 final size:15
Alignment explanation
Indices: 70373147--70373180 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
70373137 AACAGAGAGT
70373147 TACATGGGTTAGGGA
1 TACATGGGTTAGGGA
70373162 TACATGGGTTAGGGA
1 TACATGGGTTAGGGA
70373177 TACA
1 TACA
70373181 GGCGTGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.09, G:0.35, T:0.26
Consensus pattern (15 bp):
TACATGGGTTAGGGA
Found at i:70376769 original size:25 final size:25
Alignment explanation
Indices: 70376735--70376784 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
70376725 CGACACAGAA
70376735 AAATTTATTTTTATTACATTTTTAT
1 AAATTTATTTTTATTACATTTTTAT
70376760 AAATTTATTTTTATTACATTTTTAT
1 AAATTTATTTTTATTACATTTTTAT
70376785 GGTCTACTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (25 bp):
AAATTTATTTTTATTACATTTTTAT
Found at i:70381244 original size:42 final size:42
Alignment explanation
Indices: 70381181--70381286 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 42
70381171 TTAGGGTTAC
* * ** *
70381181 TGAGATTACGTGTAAGGCCATATCTGGGATATGGCATCTATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGAAATCAATA
*
70381223 TGAGATTTCGTGTAAGACCATATTTGGGATATGAAATCAATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGAAATCAATA
*
70381265 TGAGACTTCGTGTAAGACCATA
1 TGAGATTTCGTGTAAGACCATA
70381287 GCTGAGCTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGAAATCAATA
Found at i:70390296 original size:40 final size:40
Alignment explanation
Indices: 70390189--70390414 Score: 400
Period size: 40 Copynumber: 5.7 Consensus size: 40
70390179 AGCATTGGAT
70390189 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
70390229 TATATCCGGG-TTAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
70390268 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
70390308 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
70390348 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
70390388 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
70390415 ATGTGTTTGC
Statistics
Matches: 177, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.21
40 139 0.79
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:70394290 original size:41 final size:43
Alignment explanation
Indices: 70394219--70394414 Score: 122
Period size: 45 Copynumber: 4.5 Consensus size: 43
70394209 ATCAAATCAT
* ** *
70394219 CGGCATT-TAGCCTGCTAGGTTTTAAACCTGAAT-TCA-TCCAC
1 CGGCATTATAGCCTGCTAGGCTCGAAGCCTG-ATCTCATTCCAC
* *
70394260 CGGTATT-TCA-CCTGCTAGGCTCGAAGCCTGATCTCATTTCAC
1 CGGCATTAT-AGCCTGCTAGGCTCGAAGCCTGATCTCATTCCAC
* *
70394302 CGGCATTATAGCCTGCTAGGCTCGAAGGCCCGA-AT-AGTATCTCAC
1 CGGCATTATAGCCTGCTAGGCTCGAA-GCCTGATCTCA-T-TC-CAC
* ** * *
70394347 CGGCATTATAGCCTGCTCGGCTTAAAGGCCCGA-AT-AGTATCTCAC
1 CGGCATTATAGCCTGCTAGGCTCGAA-GCCTGATCTCA-T-TC-CAC
70394392 CGGCATTATAGCCTGCTAGGCTC
1 CGGCATTATAGCCTGCTAGGCTC
70394415 AAAGGCCCAA
Statistics
Matches: 131, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
40 2 0.02
41 26 0.20
42 13 0.10
43 18 0.14
44 6 0.05
45 66 0.50
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (43 bp):
CGGCATTATAGCCTGCTAGGCTCGAAGCCTGATCTCATTCCAC
Found at i:70394358 original size:45 final size:45
Alignment explanation
Indices: 70394298--70394471 Score: 294
Period size: 45 Copynumber: 3.9 Consensus size: 45
70394288 TGATCTCATT
*
70394298 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
70394343 TCACCGGCATTATAGCCTGCTCGGCTTAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
70394388 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
70394433 TCACCAGCATCATAGCCTGCTAGGCTCAAAGGCCCGAAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
70394472 TGTAACACTC
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 120 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:70396300 original size:39 final size:39
Alignment explanation
Indices: 70396084--70396278 Score: 259
Period size: 39 Copynumber: 5.0 Consensus size: 39
70396074 AGAAAGCGTG
* * *
70396084 CGGGACTTTAAGCCCGGACATAATACCAGCATAAA-GCCTG
1 CGGGAC-TT-AGCCCAGATATAATACCAGCATAAATGCCTT
*
70396124 CGGGACTTTAGGCCAGATATAATACCAGCATAAATGCCTT
1 CGGGAC-TTAGCCCAGATATAATACCAGCATAAATGCCTT
* * *
70396164 CGAGACTTAGCCCAGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCAGATATAATACCAGCATAAATGCCTT
*
70396203 CGGGACTTAGCCCAGATATAATACCAGCACAAATGCCTT
1 CGGGACTTAGCCCAGATATAATACCAGCATAAATGCCTT
* *
70396242 CAGGACTTAGCCCGGATATAATACCAGCATAAA-GCCT
1 CGGGACTTAGCCCAGATATAATACCAGCATAAATGCCT
70396279 GCGGACCTCA
Statistics
Matches: 141, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 4 0.03
39 119 0.84
40 18 0.13
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCAGATATAATACCAGCATAAATGCCTT
Found at i:70398133 original size:3 final size:3
Alignment explanation
Indices: 70398125--70398149 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
70398115 CCCAAAGATT
70398125 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
70398150 AGTTACGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:70411099 original size:47 final size:47
Alignment explanation
Indices: 70411032--70411248 Score: 255
Period size: 47 Copynumber: 4.6 Consensus size: 47
70411022 CATGCGAACG
70411032 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
* *
70411079 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
* ** * * *
70411126 TCCGAAATCGTTGAGTTGAGTCTAAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGAAATGTAACTAG-GCA
** *
70411170 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
*
70411219 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA
70411249 CTTATGGATG
Statistics
Matches: 140, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 28 0.20
47 100 0.71
48 2 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
Found at i:70411176 original size:93 final size:93
Alignment explanation
Indices: 70411079--70411294 Score: 324
Period size: 93 Copynumber: 2.3 Consensus size: 93
70411069 TAACTAGGCA
*
70411079 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAAATGTAACTAGGCATCCGAAATCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAAATCGTTGAGTTG
* *
70411144 AGTCTAAGTTCACTTATGGATGCGAATG
66 AGTCCAAGTTCACTTATGGATGCGAACG
* * **
70411172 TCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAAATCGTTGAGTTG
*
70411237 AGTCCGAGTTCACTTATGGATGCGAACG
66 AGTCCAAGTTCACTTATGGATGCGAACG
* * * *
70411265 CCCGAGCTCATTGAGTTGACTCCGAGTTCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCG
70411295 CTTATGGGCG
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 110 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAAATCGTTGAGTTG
AGTCCAAGTTCACTTATGGATGCGAACG
Found at i:70411234 original size:140 final size:140
Alignment explanation
Indices: 70410982--70411247 Score: 451
Period size: 140 Copynumber: 1.9 Consensus size: 140
70410972 AGGATATTTG
* *
70410982 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAAATCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
*
70411047 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGA
66 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA
70411112 AATGTAACTA
131 AATGTAACTA
* *
70411122 GGCATCCGAAATCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAAATCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
** * *
70411187 TTGAGTCCGAGTTTGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
66 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
70411248 ACTTATGGAT
Statistics
Matches: 117, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
140 117 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (140 bp):
GGCATCCGAAATCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA
AATGTAACTA
Found at i:70414313 original size:30 final size:28
Alignment explanation
Indices: 70414279--70414345 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
70414269 GTAGTATCTT
70414279 GGGTTTCTTTAT-TCTAGATTTCTTTATTCC
1 GGGTTTCTTTATCT-TAGATTTCTTT-TT-C
* *
70414309 GGGTTTCTCTATCTTGGATTTCTTTTTC
1 GGGTTTCTTTATCTTAGATTTCTTTTTC
*
70414337 GGTTTTCTT
1 GGGTTTCTT
70414346 GTTATCTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 8 0.25
29 2 0.06
30 21 0.66
31 1 0.03
ACGTcount: A:0.09, C:0.16, G:0.16, T:0.58
Consensus pattern (28 bp):
GGGTTTCTTTATCTTAGATTTCTTTTTC
Found at i:70417131 original size:46 final size:46
Alignment explanation
Indices: 70417075--70417343 Score: 217
Period size: 46 Copynumber: 5.8 Consensus size: 46
70417065 TATTTGGGCA
* *
70417075 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * *
70417121 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
* * *
70417168 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
70417214 TCCGAACTCGTTGAGTTGAGTCGGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
70417259 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
70417307 CCCGAGCTCATTGAGTTGACTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70417344 GCGGGTTACA
Statistics
Matches: 175, Mismatches: 34, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
45 4 0.02
46 94 0.54
47 60 0.34
48 4 0.02
50 4 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:70417188 original size:47 final size:47
Alignment explanation
Indices: 70417125--70417289 Score: 205
Period size: 47 Copynumber: 3.5 Consensus size: 47
70417115 CGAACGTCCA
*
70417125 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
* * *
70417172 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAA-T--G--TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCATCCG
*
70417218 AACTCGTTGAGTTGAGTCGGAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
*
70417265 AGCTCGTTGAGTTGAGTCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
70417290 ACTTATGGAT
Statistics
Matches: 100, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 3 0.03
46 28 0.28
47 51 0.51
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
Found at i:70417230 original size:93 final size:93
Alignment explanation
Indices: 70417071--70417336 Score: 424
Period size: 93 Copynumber: 2.9 Consensus size: 93
70417061 AGGATATTTG
* *
70417071 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
70417136 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
70417164 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
70417229 TTGAGTCGGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * * * *
70417257 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
70417322 TTGACTCCGAGTTCG
66 TTGAGTCCGAGTTCG
70417337 CTTATGGGCG
Statistics
Matches: 158, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:70421433 original size:34 final size:34
Alignment explanation
Indices: 70421395--70421466 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
70421385 TAATTTAATT
70421395 ACTTAACTATTCTTTAATATATATATTCATATTA
1 ACTTAACTATTCTTTAATATATATATTCATATTA
70421429 ACTTAACTATTCTTTAATATATATATTCATATTA
1 ACTTAACTATTCTTTAATATATATATTCATATTA
70421463 ACTT
1 ACTT
70421467 CTTAAATCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (34 bp):
ACTTAACTATTCTTTAATATATATATTCATATTA
Found at i:70421455 original size:16 final size:16
Alignment explanation
Indices: 70421402--70421456 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 16
70421392 ATTACTTAAC
70421402 TATTCTTTAATATATA
1 TATTCTTTAATATATA
70421418 TATTCATATTAACT-TA-A
1 TATTC-T-TTAA-TATATA
70421435 CTATTCTTTAATATATA
1 -TATTCTTTAATATATA
70421452 TATTC
1 TATTC
70421457 ATATTAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
15 1 0.03
16 16 0.48
17 4 0.12
18 11 0.33
19 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTCTTTAATATATA
Found at i:70425999 original size:3 final size:3
Alignment explanation
Indices: 70425980--70426032 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
70425970 TTAGGGTTAG
* * * *
70425980 AGA AAA AGA AAA AGA AGA AGA AG- AGG AGG AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
70426027 A-A AGA A
1 AGA AGA A
70426033 AAAAAATGGA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
2 4 0.09
3 39 0.91
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:70426031 original size:17 final size:17
Alignment explanation
Indices: 70425980--70426032 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
70425970 TTAGGGTTAG
* *
70425980 AGAAAAAGAAAAAGAAGA
1 AGAAGAAGAAGAA-AAGA
* * *
70425998 AGAAGAGGAGGAGAAGA
1 AGAAGAAGAAGAAAAGA
70426015 AGAAGAAGAAGAAAAGA
1 AGAAGAAGAAGAAAAGA
70426032 A
1 A
70426033 AAAAAATGGA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
AGAAGAAGAAGAAAAGA
Found at i:70426724 original size:23 final size:24
Alignment explanation
Indices: 70426677--70426724 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
70426667 GATGAAAAAA
*
70426677 ACACATATGTATTTCTCAATTCTC
1 ACACATATGTATTTCTCAATACTC
* *
70426701 ACACATTTGT-TTTTTCAATACTC
1 ACACATATGTATTTCTCAATACTC
70426724 A
1 A
70426725 TATGTTAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (24 bp):
ACACATATGTATTTCTCAATACTC
Found at i:70427206 original size:21 final size:21
Alignment explanation
Indices: 70427173--70427228 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
70427163 GTTGATGCAG
*
70427173 CTTGTTGAGTTGGGGTA-CTCT
1 CTTGCTGAGTTGGGGTAGCT-T
*
70427194 CTTGCTGATTTGGGGTAGCTT
1 CTTGCTGAGTTGGGGTAGCTT
*
70427215 GTTGCTGAGTTGGG
1 CTTGCTGAGTTGGG
70427229 ACACCAACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.09, C:0.12, G:0.38, T:0.41
Consensus pattern (21 bp):
CTTGCTGAGTTGGGGTAGCTT
Found at i:70428032 original size:22 final size:22
Alignment explanation
Indices: 70428004--70428046 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
70427994 CATGTGACCA
*
70428004 GCAACATGAAGTCAGACTAAAG
1 GCAACATGAAGTCAGAATAAAG
70428026 GCAACATGAAGTCAGAATAAA
1 GCAACATGAAGTCAGAATAAA
70428047 TGCATCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.16, G:0.21, T:0.14
Consensus pattern (22 bp):
GCAACATGAAGTCAGAATAAAG
Found at i:70429928 original size:39 final size:39
Alignment explanation
Indices: 70429858--70430075 Score: 303
Period size: 39 Copynumber: 5.5 Consensus size: 39
70429848 ACAAAGCATG
* * *
70429858 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
70429898 CGGGACTTTAGCCCGGATATAACACTAGCACGACTGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
70429938 CGAGAGTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
70429977 CGGGACATAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
70430016 CGGGACTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
70430055 CGGGACTTAGCCCTGATATAA
1 CGGGACTTAGCCCGGATATAA
70430076 TTCTCCATTA
Statistics
Matches: 159, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 141 0.89
40 18 0.11
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:70434502 original size:40 final size:40
Alignment explanation
Indices: 70434441--70434632 Score: 254
Period size: 40 Copynumber: 4.9 Consensus size: 40
70434431 AGCCGAGCAA
70434441 TTGTGCGA-TTA-TAT-TCCGGGCTAAGTCCCGAAGGCAT
1 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
70434478 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
*
70434518 TTGTGCGAAG-TACTATATCTGGGCTAAGTCCCGAAGGCAT
1 TTGTGCG-AGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
* * *
70434558 TTGTGCGAGTTGCTATAACCGAGCTAAGTCCCGAAGGCAT
1 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
* **
70434598 TTGAGC-AG-TAGCTATATCC-GGCTAAACCCCGAAGG
1 TTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
70434633 TACTTGCTTG
Statistics
Matches: 138, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
37 8 0.06
38 17 0.12
39 14 0.10
40 97 0.70
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
Found at i:70436772 original size:15 final size:15
Alignment explanation
Indices: 70436754--70436783 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70436744 CTTTCAGATG
*
70436754 CATCACTACTAGACA
1 CATCACTACCAGACA
70436769 CATCACTACCAGACA
1 CATCACTACCAGACA
70436784 TGTTTTCTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.37, G:0.07, T:0.17
Consensus pattern (15 bp):
CATCACTACCAGACA
Found at i:70437177 original size:48 final size:48
Alignment explanation
Indices: 70437123--70437231 Score: 200
Period size: 48 Copynumber: 2.3 Consensus size: 48
70437113 GCAGATATAC
*
70437123 ACAATAAACATCAGTTTGATAATGGCATCCATACAATGGCAAATACAA
1 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
*
70437171 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAGATACAA
1 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
70437219 ACAATAAACATCA
1 ACAATAAACATCA
70437232 CGCACATGGC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.48, C:0.19, G:0.11, T:0.22
Consensus pattern (48 bp):
ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
Found at i:70437292 original size:6 final size:6
Alignment explanation
Indices: 70437283--70437436 Score: 71
Period size: 6 Copynumber: 24.7 Consensus size: 6
70437273 AAATAACCCT
* * * * * *
70437283 AAATCA AAATCC AAATCG AAATCA AAATCT AAATCTA AAGT-T AAATCG
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATC-A AAATCA AAATCA
* * ** **
70437331 AGATCG AAATTG AAATCA AAATCA AAATCA AAATCA GTGAGTGTTTCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA ---A---AATCA
* * *
70437379 AAAT-A GAAATCA AAATCG AAAT-A GAAATCA AAATCA AAATCA GAATCG
1 AAATCA -AAATCA AAATCA AAATCA -AAATCA AAATCA AAATCA AAATCA
70437427 AAATCA AAAT
1 AAATCA AAAT
70437437 TGAAATAGAA
Statistics
Matches: 112, Mismatches: 24, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
5 4 0.04
6 98 0.88
7 5 0.04
9 2 0.02
12 3 0.03
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (6 bp):
AAATCA
Found at i:70443716 original size:38 final size:38
Alignment explanation
Indices: 70443666--70443823 Score: 210
Period size: 38 Copynumber: 4.1 Consensus size: 38
70443656 TTTAAGCTCA
*
70443666 GATATAATACCAGCACTAGGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
* *
70443704 GATATAATACCAGCACGAAGCCTGCGGGAATTAACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
* * *
70443742 GATATATTACCAGCACAAAGCCTGCGGTATTTAACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
* *
70443780 GATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCACTA-AGCCTGCGGG-ATTTAA-CCCG
70443820 GATA
1 GATA
70443824 CACATCAAAT
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
37 1 0.01
38 91 0.87
39 5 0.05
40 8 0.08
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
Found at i:70451671 original size:44 final size:43
Alignment explanation
Indices: 70451533--70451699 Score: 160
Period size: 42 Copynumber: 3.9 Consensus size: 43
70451523 CTCGTACAAC
* * * * *
70451533 GCCAACGTCTCAGACGTGGTCTTACATGTAATCACATATCGAT
1 GCCAACGTCCCAAACATGGTCTTACATGAAATCACATATTGAT
* * * * * *
70451576 -CC-ACTATCCCAGACAGGGTCTTACACGAACTCATATA-TGAT
1 GCCAAC-GTCCCAAACATGGTCTTACATGAAATCACATATTGAT
* * *
70451617 GCTAATGTCCCAAACATGGTCTTACATGTAAATCACAAATTGAT
1 GCCAACGTCCCAAACATGGTCTTACATG-AAATCACATATTGAT
*
70451661 GCCAACGTCCCAAACGTGGTCTTACATGAAATCACATAT
1 GCCAACGTCCCAAACATGGTCTTACATGAAATCACATAT
70451700 CAGAATCCTA
Statistics
Matches: 97, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 5 0.05
42 45 0.46
43 18 0.19
44 29 0.30
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
GCCAACGTCCCAAACATGGTCTTACATGAAATCACATATTGAT
Found at i:70452334 original size:62 final size:62
Alignment explanation
Indices: 70452258--70452389 Score: 264
Period size: 62 Copynumber: 2.1 Consensus size: 62
70452248 CATTTTTACT
70452258 AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
1 AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
70452320 AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
1 AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
70452382 AAAAATCA
1 AAAAATCA
70452390 TCAAGCTTTC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (62 bp):
AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
Found at i:70458085 original size:12 final size:12
Alignment explanation
Indices: 70458068--70458092 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70458058 AGAGAATGAT
70458068 TGCAAAATACAA
1 TGCAAAATACAA
70458080 TGCAAAATACAA
1 TGCAAAATACAA
70458092 T
1 T
70458093 TAACATGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (12 bp):
TGCAAAATACAA
Found at i:70463351 original size:20 final size:21
Alignment explanation
Indices: 70463326--70463374 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
70463316 TGAAACAGGG
* * *
70463326 AACACGCTCGTGTGG-TGGGC
1 AACACGCCCGTATGGATAGGC
70463346 AACACGCCCGTATGGATAGGC
1 AACACGCCCGTATGGATAGGC
70463367 AACACGCC
1 AACACGCC
70463375 TGTGTGGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.24, C:0.31, G:0.31, T:0.14
Consensus pattern (21 bp):
AACACGCCCGTATGGATAGGC
Found at i:70463382 original size:21 final size:21
Alignment explanation
Indices: 70463326--70463382 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
70463316 TGAAACAGGG
*
70463326 AACACG-CTCGTGTGG-TGGGC
1 AACACGCCT-GTGTGGATAGGC
* *
70463346 AACACGCCCGTATGGATAGGC
1 AACACGCCTGTGTGGATAGGC
70463367 AACACGCCTGTGTGGA
1 AACACGCCTGTGTGGA
70463383 ACTTGAACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 11 0.37
21 19 0.63
ACGTcount: A:0.23, C:0.26, G:0.33, T:0.18
Consensus pattern (21 bp):
AACACGCCTGTGTGGATAGGC
Found at i:70464693 original size:50 final size:49
Alignment explanation
Indices: 70464580--70464706 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
70464570 CATCAAGTCA
*
70464580 ATGCCATGTCCCAAACATGGTCTTACACTAACTATCGAAATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCGAGGCCG
* * * * * *
70464629 ACGCCATGTCCCAGACATGGTCTTACATTAGCTCTC-ACATATTCG-TGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGA-A-A-TCGAGGCCG
70464679 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
70464707 AACACCTCTA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
48 1 0.02
49 32 0.48
50 30 0.45
51 3 0.05
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCGAGGCCG
Found at i:70464825 original size:46 final size:45
Alignment explanation
Indices: 70464736--70464938 Score: 157
Period size: 46 Copynumber: 4.4 Consensus size: 45
70464726 ATGCTATTTC
* * * *
70464736 CCAGACATGGTCTTACACT-G-ACACATCTCGTAGCT-GATACATGTT
1 CCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGTTCGATGCATG-T
*
70464781 CCAGACATGTCTTACACTGGCT-TACATCTCGAGGTCGATGCATGT
1 CCAGACATGTCTTACACTGGCTCT-CATCTCGAGTTCGATGCATGT
* * * *
70464826 CCCAGATATGTCTTACACTAGCTCTCGTCTC-AATTCTGATGCCATGT
1 -CCAGACATGTCTTACACTGGCTCTCATCTCGAGTTC-GATG-CATGT
* * *
70464873 CCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGTTCGGTGCATGT
1 CC-AGACAT-GTCTTACACTGGCTCTCAT-CTCGAGTTCGATGCATGT
70464920 CCTAGACATGTCTTACACT
1 CC-AGACATGTCTTACACT
70464939 AGCACACAAA
Statistics
Matches: 130, Mismatches: 16, Indels: 23
0.77 0.09 0.14
Matches are distributed among these distances:
44 10 0.08
45 16 0.12
46 55 0.42
47 25 0.19
48 20 0.15
49 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (45 bp):
CCAGACATGTCTTACACTGGCTCTCATCTCGAGTTCGATGCATGT
Found at i:70468938 original size:137 final size:139
Alignment explanation
Indices: 70468780--70469038 Score: 321
Period size: 137 Copynumber: 1.9 Consensus size: 139
70468770 CACTTTTTGA
** ** * *
70468780 TTTTTTTAACACATTAGCTTCTTTGTTTAGATGGTTAAATGTTAGTGGTTTT-GTCTTTGAATCT
1 TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTATTC-TTGAATCT
* ** *
70468844 CTAGTTTGATTC-TCTTT-TACTCACATTTG-TTTTTTTATTCCAT-TTGTTTCAAGCTTAATTT
65 CAAGTTTGATTCAT-TTTCTAAGCACATTTGCATTTTTTATTCCATGTT-TTTCAAGCTTAATTT
70468905 TTTTTATATAAC
128 TTTTTATATAAC
** * *
70468917 TTTTTTTAACATGTTAGCTTCTTTACTTAGATGGTTAATTAATAGTGATTTTATTCTTGAGTCTC
1 TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTATTCTTGAATCTC
*
70468982 AAGTTTGATTCATTTTCTAAGCACATTTGCATTTTTTATTTCATGTTTTTCAAGCTT
66 AAGTTTGATTCATTTTCTAAGCACATTTGCATTTTTTATTCCATGTTTTTCAAGCTT
70469039 TTTTTAATTA
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
137 65 0.64
138 13 0.13
139 22 0.22
140 2 0.02
ACGTcount: A:0.22, C:0.12, G:0.12, T:0.54
Consensus pattern (139 bp):
TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTATTCTTGAATCTC
AAGTTTGATTCATTTTCTAAGCACATTTGCATTTTTTATTCCATGTTTTTCAAGCTTAATTTTTT
TTATATAAC
Found at i:70471257 original size:35 final size:35
Alignment explanation
Indices: 70471218--70471288 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
70471208 TTTAGACTCT
*
70471218 TGCAAGTAAGTGATTTTGATGGTCTTCCTTGATGA
1 TGCAAGTAAGAGATTTTGATGGTCTTCCTTGATGA
* *
70471253 TGCAAGTAAGAGATTTTTATGGTCTTTCTTGATGA
1 TGCAAGTAAGAGATTTTGATGGTCTTCCTTGATGA
70471288 T
1 T
70471289 TTTTTTGTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.42
Consensus pattern (35 bp):
TGCAAGTAAGAGATTTTGATGGTCTTCCTTGATGA
Found at i:70472129 original size:96 final size:94
Alignment explanation
Indices: 70471965--70472196 Score: 263
Period size: 96 Copynumber: 2.4 Consensus size: 94
70471955 TGATACTAGG
* * * * *
70471965 TTATGTGAGCCAGTATAAGACCATATTTTGAACATGACATCGACATTTATATGAGAGCTAGTGTA
1 TTATGTGAGCCAGTGT-AGACCAT-GTTTGGACATGGCATCGACATTGATATGAGAGCTAGTGTA
70472030 AGACCATGTCTGGGACATGGCATCAGC-CTC-A
64 AGACCATGT-TGGGACATGGCATCAGCAC-CGA
* * * *
70472061 TTATGTGAGCTAGTGTATGACCATGTTTGGGACATGGCATCGTCCTTGATATGTGAGCTAGTGTA
1 TTATGTGAGCCAGTGTA-GACCATGTTT-GGACATGGCATCGACATTGATATGAGAGCTAGTGTA
* *
70472126 AGACCATGTTTGGACATGGCATCGGCACCGA
64 AGACCATGTTGGGACATGGCATCAGCACCGA
* *
70472157 -TATATGAGGCCAGTGTAGACCATGTCTGGACATGGCATCG
1 TTATGTGA-GCCAGTGTAGACCATGTTTGGACATGGCATCG
70472197 GCATCTTGCC
Statistics
Matches: 117, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
94 13 0.11
95 35 0.30
96 69 0.59
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (94 bp):
TTATGTGAGCCAGTGTAGACCATGTTTGGACATGGCATCGACATTGATATGAGAGCTAGTGTAAG
ACCATGTTGGGACATGGCATCAGCACCGA
Found at i:70472159 original size:47 final size:48
Alignment explanation
Indices: 70471966--70472199 Score: 228
Period size: 48 Copynumber: 4.9 Consensus size: 48
70471956 GATACTAGGT
* * * * * * **
70471966 TATGTGAGCCAGTATAAGACCATATTTTGAACATGACATCGACA-TTTA
1 TATGTGAGCTAGTGTAAGACCAT-GTTTGGACATGGCATCGGCACTCGA
* * *
70472014 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTC-A
1 TATGTGAGCTAGTGTAAGACCATGT-TTGGACATGGCATCGGCACTCGA
* * *
70472061 TTATGTGAGCTAGTGTATGACCATGTTTGGGACATGGCATCGTC-CTTGA
1 -TATGTGAGCTAGTGTAAGACCATGTTT-GGACATGGCATCGGCACTCGA
70472110 TATGTGAGCTAGTGTAAGACCATGTTTGGACATGGCATCGGCAC-CGA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGACATGGCATCGGCACTCGA
* * *
70472157 TATATGAGGCCAGTGT-AGACCATGTCTGGACATGGCATCGGCA
1 TATGTGA-GCTAGTGTAAGACCATGTTTGGACATGGCATCGGCA
70472200 TCTTGCCCTT
Statistics
Matches: 157, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
47 51 0.32
48 105 0.67
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGACATGGCATCGGCACTCGA
Found at i:70487609 original size:46 final size:46
Alignment explanation
Indices: 70487559--70487734 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
70487549 TGGTTGAGCA
*
70487559 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70487605 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
70487650 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70487698 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70487735 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 29 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70487715 original size:93 final size:93
Alignment explanation
Indices: 70487556--70487727 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70487546 GGATGGTTGA
***
70487556 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
70487621 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
70487649 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
70487714 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
70487728 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70493157 original size:27 final size:27
Alignment explanation
Indices: 70493119--70493173 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
70493109 GTGTTGAAAG
70493119 TAAGTATAATTATGATGATTTAAATGT
1 TAAGTATAATTATGATGATTTAAATGT
70493146 TAAGTATAATTATGATGATTTAAATGT
1 TAAGTATAATTATGATGATTTAAATGT
70493173 T
1 T
70493174 CAATATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (27 bp):
TAAGTATAATTATGATGATTTAAATGT
Found at i:70493498 original size:68 final size:67
Alignment explanation
Indices: 70493426--70493575 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70493416 CATCATGTGT
* * * *
70493426 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATAC-TATG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACC
70493488 ATGTAG
62 ATGTAG
** * *
70493494 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGCTCCAGATGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACCATGT
70493559 AG
66 AG
70493561 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70493576 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 6 0.09
66 5 0.07
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAGATGAAGGACACCATGT
AG
Found at i:70500389 original size:48 final size:48
Alignment explanation
Indices: 70500333--70500428 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
70500323 AATTAGTCCT
* *
70500333 AAATGCATGATTAAAGCTTTAATATGATTGTTTTTAAATATATTAGAA
1 AAATGCATGATTAAACCTTTAATATGATTGTTTTTAAATAAATTAGAA
70500381 AAATGCATGATTAAACCTTTAATATGATTGTTTTTAAATAAATTAGAA
1 AAATGCATGATTAAACCTTTAATATGATTGTTTTTAAATAAATTAGAA
70500429 TGTGAATGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (48 bp):
AAATGCATGATTAAACCTTTAATATGATTGTTTTTAAATAAATTAGAA
Found at i:70506230 original size:22 final size:24
Alignment explanation
Indices: 70506161--70506270 Score: 90
Period size: 23 Copynumber: 4.8 Consensus size: 24
70506151 TTCGTATGAT
70506161 CTTACTG-TTTCAGCTC-ATAGGAG
1 CTTACTGTTTTCAGCTCAATA-GAG
*
70506184 CTTACTG-ATTCAGCTCGGAA-A-AG
1 CTTACTGTTTTCAGCTC--AATAGAG
*
70506207 CTTACTG-TTT-AGCTTAATAGAG
1 CTTACTGTTTTCAGCTCAATAGAG
* *
70506229 CTTACCGTTTTCAGCTCAATAGAA
1 CTTACTGTTTTCAGCTCAATAGAG
* *
70506253 CTTACTATTATCAGCTCA
1 CTTACTGTTTTCAGCTCA
70506271 TGAAAAGCTT
Statistics
Matches: 71, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
20 2 0.03
21 1 0.01
22 12 0.17
23 29 0.41
24 25 0.35
25 1 0.01
26 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (24 bp):
CTTACTGTTTTCAGCTCAATAGAG
Found at i:70513274 original size:40 final size:40
Alignment explanation
Indices: 70513222--70513343 Score: 163
Period size: 40 Copynumber: 3.0 Consensus size: 40
70513212 GGATTTAGCT
* * *
70513222 GGATATAACAACTCACACAAAAGCCTTCGGGTCTTAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* *
70513262 GGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* * * *
70513302 GTATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
70513342 GG
1 GG
70513344 TTATCATCCG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
Found at i:70521233 original size:40 final size:40
Alignment explanation
Indices: 70521175--70521342 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
70521165 TCCTCGGGAT
*
70521175 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* *
70521214 TTAGCCCAGATATAGCAACTCGCACAAATGCCTTCAGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
70521254 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * * *
70521294 ATAGCCTGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
70521334 TTAGTCCGG
1 TTAGCCCGG
70521343 TTATCATCCG
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:70529825 original size:44 final size:43
Alignment explanation
Indices: 70529773--70529875 Score: 134
Period size: 44 Copynumber: 2.4 Consensus size: 43
70529763 ATGTTTTCTT
* * *
70529773 ATGTAAGACAACGTCTGGGACATTGGCATCGATTATGTGGTTAC
1 ATGTAAGACCACGTCTGGGACAGTGGCATCGA-TATGTGATTAC
* ***
70529817 GTGTAAGACCTTATCTGGGACAGTGGCATCGATATGTGATTAC
1 ATGTAAGACCACGTCTGGGACAGTGGCATCGATATGTGATTAC
70529860 ATGTAAGACCACGTCT
1 ATGTAAGACCACGTCT
70529876 ATGACGTTGG
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
43 22 0.46
44 26 0.54
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
ATGTAAGACCACGTCTGGGACAGTGGCATCGATATGTGATTAC
Found at i:70529867 original size:43 final size:44
Alignment explanation
Indices: 70529786--70529869 Score: 134
Period size: 43 Copynumber: 1.9 Consensus size: 44
70529776 TAAGACAACG
* * *
70529786 TCTGGGACATTGGCATCGATTATGTGGTTACGTGTAAGACCTTA
1 TCTGGGACAGTGGCATCGATTATGTGATTACATGTAAGACCTTA
70529830 TCTGGGACAGTGGCATCGA-TATGTGATTACATGTAAGACC
1 TCTGGGACAGTGGCATCGATTATGTGATTACATGTAAGACC
70529870 ACGTCTATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 19 0.51
44 18 0.49
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (44 bp):
TCTGGGACAGTGGCATCGATTATGTGATTACATGTAAGACCTTA
Found at i:70529887 original size:43 final size:44
Alignment explanation
Indices: 70529773--70529888 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 44
70529763 ATGTTTTCTT
* * *
70529773 ATGTAAGACAACGTCTGGGACATTGGCATCGATTATGTGGTTAC
1 ATGTAAGACCACGTCTGGGACGTTGGCATCGATTATGTGATTAC
* ***
70529817 GTGTAAGACCTTATCTGGGACAG-TGGCATCGA-TATGTGATTAC
1 ATGTAAGACCACGTCTGGGAC-GTTGGCATCGATTATGTGATTAC
**
70529860 ATGTAAGACCACGTCTATGACGTTGGCAT
1 ATGTAAGACCACGTCTGGGACGTTGGCAT
70529889 TGTACGATAT
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
42 1 0.02
43 31 0.54
44 25 0.44
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
ATGTAAGACCACGTCTGGGACGTTGGCATCGATTATGTGATTAC
Found at i:70536999 original size:40 final size:40
Alignment explanation
Indices: 70536955--70537142 Score: 265
Period size: 40 Copynumber: 4.7 Consensus size: 40
70536945 GCTACTTGCT
*
70536955 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70536995 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** *
70537035 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
70537075 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCAC-CAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTC-GCA
*
70537114 CAAATGCCTTCGGGACTTAGCCCAGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
70537143 CATCCGAATA
Statistics
Matches: 134, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 100 0.75
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:70545023 original size:40 final size:40
Alignment explanation
Indices: 70544967--70545154 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
70544957 GCTACTTGCT
*
70544967 CAAATGCTTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
70545007 CAAAGGCCTTCAGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
70545047 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
70545087 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
70545126 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
70545155 CATCCGAATA
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 4 0.03
39 32 0.24
40 94 0.71
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:70546913 original size:47 final size:47
Alignment explanation
Indices: 70546862--70547236 Score: 554
Period size: 47 Copynumber: 8.0 Consensus size: 47
70546852 GATTTTATGA
*
70546862 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
70546909 GATGAATGTGAACTTGCAGATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
70546956 GATGAATGTGAACTTGCAGATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
70547003 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
70547050 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
70547097 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* **
70547144 GATGAATGTGAACATGCATATATGTGATATGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * ** * *
70547191 GATGAACGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATG
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
70547237 CGAAACGTGT
Statistics
Matches: 301, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 298 0.99
48 3 0.01
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:70547269 original size:46 final size:46
Alignment explanation
Indices: 70547210--70547346 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
70547200 GGAAGTGTAT
* *
70547210 ATATGTGGCAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
70547256 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * **
70547302 ATATGAGGTAGAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
70547347 TGTATATATA
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.34, C:0.10, G:0.33, T:0.23
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:70556544 original size:34 final size:34
Alignment explanation
Indices: 70556493--70556567 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
70556483 CAGTGTTGAA
* *
70556493 CAGTCTGGGCCTAAGCCC-ATATCAGTCACAATAT
1 CAGTGTGGGCCTAAGCCCAATA-CAGTAACAATAT
* * *
70556527 TAGTGTGGGCCTCAGCCCAATACAGTAACAGTAT
1 CAGTGTGGGCCTAAGCCCAATACAGTAACAATAT
70556561 CAGTGTG
1 CAGTGTG
70556568 CATTCAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 31 0.91
35 3 0.09
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (34 bp):
CAGTGTGGGCCTAAGCCCAATACAGTAACAATAT
Found at i:70561950 original size:27 final size:26
Alignment explanation
Indices: 70561920--70562010 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 26
70561910 AGAGGCATTT
* *
70561920 CAGTCATTTTACCACAAAAGAGCAAAA
1 CAGTCATTTTACCATATAAG-GCAAAA
70561947 CAGTCATTTTACCATATAAGGACAAAA
1 CAGTCATTTTACCATATAAGG-CAAAA
* * *
70561974 TAATCATTTTACCATATGAGGGCAAAA
1 CAGTCATTTTACCATAT-AAGGCAAAA
70562001 CAGTCATTTT
1 CAGTCATTTT
70562011 GATCAATCAG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 51 0.93
28 3 0.05
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (26 bp):
CAGTCATTTTACCATATAAGGCAAAA
Done.