Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 216 of 356
Found at i:70567658 original size:20 final size:20
Alignment explanation
Indices: 70567633--70567678 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
70567623 CCCTGCATTG
*
70567633 TTTTA-TTCATTTATTTTGTT
1 TTTTATTTC-TTTATTTAGTT
70567653 TTTTATTTCTTTATTTAGTT
1 TTTTATTTCTTTATTTAGTT
70567673 TATTTA
1 T-TTTA
70567679 ATACTTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (20 bp):
TTTTATTTCTTTATTTAGTT
Found at i:70569421 original size:40 final size:40
Alignment explanation
Indices: 70569249--70569423 Score: 239
Period size: 40 Copynumber: 4.4 Consensus size: 40
70569239 AAACCAAGTA
* *
70569249 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
70569288 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70569328 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * *
70569368 CCTTCGGGGCTTAGCCCACA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70569408 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
70569424 TGGTTATCAT
Statistics
Matches: 123, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 14 0.11
40 109 0.89
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70576052 original size:27 final size:28
Alignment explanation
Indices: 70575968--70576065 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
70575958 CATGAGATTG
* * * *
70575968 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
70575997 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70576025 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70576052 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
70576066 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70576076 original size:27 final size:27
Alignment explanation
Indices: 70575996--70576078 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
70575986 TAAATTGTAC
* *
70575996 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
70576024 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
70576051 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
70576078 A
1 A
70576079 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:70576079 original size:29 final size:27
Alignment explanation
Indices: 70575968--70576079 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
70575958 CATGAGATTG
** * *
70575968 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
70575997 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
70576025 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
70576052 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
70576080 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:70584152 original size:27 final size:28
Alignment explanation
Indices: 70584068--70584165 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
70584058 CATGAGATTG
* * * * *
70584068 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
70584097 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70584125 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70584152 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
70584166 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.35
29 17 0.27
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70584179 original size:29 final size:27
Alignment explanation
Indices: 70584096--70584179 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
70584086 TAAATTGTAC
* *
70584096 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
70584124 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
70584151 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
70584180 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:70604452 original size:46 final size:46
Alignment explanation
Indices: 70604400--70604509 Score: 175
Period size: 46 Copynumber: 2.4 Consensus size: 46
70604390 TTGGGCATCT
* ** *
70604400 GAACTCGTTGACTTGAGTCTGAGTTCACTTATGGATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCC
70604446 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCC
*
70604492 GAGCTCGTTGAGTTGAGT
1 GAACTCGTTGAGTTGAGT
70604510 TCGAGTTTGC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCC
Found at i:70604523 original size:46 final size:46
Alignment explanation
Indices: 70604400--70604525 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 46
70604390 TTGGGCATCT
* *
70604400 GAACTCGTTGACTTGAG-TCTGAGTTCACTTATGGATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGGATGCGAACGCCC
* *
70604446 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCC
* **
70604492 GAGCTCGTTGAGTTGAGTTCGAGTTTGCTTATGG
1 GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGG
70604526 GTGGGTTACA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
46 69 0.99
47 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCC
Found at i:70607634 original size:40 final size:40
Alignment explanation
Indices: 70607393--70607620 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
70607383 TATTCGGATG
* *
70607393 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70607433 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70607472 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70607512 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70607552 ATAACCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
70607592 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
70607621 AGCAAGTAGC
Statistics
Matches: 177, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
39 36 0.20
40 141 0.80
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:70607634 original size:80 final size:80
Alignment explanation
Indices: 70607393--70607653 Score: 377
Period size: 80 Copynumber: 3.3 Consensus size: 80
70607383 TATTCGGATG
* * * *
70607393 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGC
70607456 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * *
70607472 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
70607537 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
70607552 ATAACCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
* *
70607617 TTTGAGCAAG-TAGCT
66 TTTGTGCGAGTTA-CT
* *
70607632 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAATCCCGAAGG
70607654 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
79 64 0.38
80 103 0.62
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:70607634 original size:120 final size:119
Alignment explanation
Indices: 70607393--70607653 Score: 375
Period size: 120 Copynumber: 2.2 Consensus size: 119
70607383 TATTCGGATG
* *
70607393 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
70607458 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
* * *
70607512 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAATCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCT-AAGCCCGAAGGC
70607576 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
64 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
70607632 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
70607654 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
118 2 0.02
119 60 0.47
120 65 0.51
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:70617098 original size:20 final size:21
Alignment explanation
Indices: 70617065--70617104 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
70617055 GAAATAAAGG
70617065 GAAAAAAAAGAAAAGTTAAAA
1 GAAAAAAAAGAAAAGTTAAAA
* *
70617086 GAAAATAAA-AAAATTTAAA
1 GAAAAAAAAGAAAAGTTAAA
70617105 TTGCTCAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (21 bp):
GAAAAAAAAGAAAAGTTAAAA
Found at i:70618209 original size:15 final size:17
Alignment explanation
Indices: 70618191--70618230 Score: 57
Period size: 15 Copynumber: 2.4 Consensus size: 17
70618181 ATTAATTTGG
70618191 TTAAAATG-GATTTT-T
1 TTAAAATGAGATTTTAT
70618206 TTAAAATGAGATTTTAT
1 TTAAAATGAGATTTTAT
70618223 TTGAAAAT
1 TT-AAAAT
70618231 AATTTTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 3 0.14
18 5 0.23
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (17 bp):
TTAAAATGAGATTTTAT
Found at i:70627259 original size:31 final size:31
Alignment explanation
Indices: 70627224--70627287 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
70627214 ACTGTGTAGC
70627224 TGAAAGTAAGATTGCTGAGATCTTGTATCAT
1 TGAAAGTAAGATTGCTGAGATCTTGTATCAT
70627255 TGAAAGTAAGATTGCTGAGATCTTGTATCAT
1 TGAAAGTAAGATTGCTGAGATCTTGTATCAT
70627286 TG
1 TG
70627288 CCATTCATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.36
Consensus pattern (31 bp):
TGAAAGTAAGATTGCTGAGATCTTGTATCAT
Found at i:70630079 original size:19 final size:19
Alignment explanation
Indices: 70630051--70630102 Score: 50
Period size: 21 Copynumber: 2.6 Consensus size: 19
70630041 CGACCGTGCC
* *
70630051 AAAAATTTTCACATTCATG
1 AAAAACTTTCACATTCATA
*
70630070 AAAAACTTTCTTGCATTCATA
1 AAAAACTTTC--ACATTCATA
70630091 AAACAACTTTCA
1 AAA-AACTTTCA
70630103 TATTAGCCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
19 9 0.35
21 10 0.38
22 7 0.27
ACGTcount: A:0.42, C:0.19, G:0.04, T:0.35
Consensus pattern (19 bp):
AAAAACTTTCACATTCATA
Found at i:70633453 original size:47 final size:47
Alignment explanation
Indices: 70633398--70633677 Score: 402
Period size: 47 Copynumber: 6.0 Consensus size: 47
70633388 TTAGGATTTT
* * * *
70633398 ATGTGATGAATGTGAATATGTATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70633445 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70633492 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
70633539 ATGTGATGAATGTGAACATGCATATCTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70633586 ATGTGATGAATGTGACCATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
70633633 ATGTGATGAACGTGAA-AGTGTATATATGTGGTGAA-GCCGAATGGC
1 ATGTGATGAATGTGAACA-TGCATATATGTGAT-AAGGCCGAATGGC
70633678 TAATCCGAAA
Statistics
Matches: 211, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
46 1 0.00
47 208 0.99
48 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:70633545 original size:22 final size:22
Alignment explanation
Indices: 70633518--70633639 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
70633508 CATGCATATG
70633518 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
70633540 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
70633563 TCTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
*
70633587 TGTGATGAATGTGACC--AT-GCATATA
1 TGTGAT-AA-G-G-CCGAATGGC-CA-A
*
70633612 TGTGATAAGGCAGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
70633634 TGTGAT
1 TGTGAT
70633640 GAACGTGAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 36
0.64 0.06 0.31
Matches are distributed among these distances:
21 1 0.01
22 23 0.31
23 16 0.21
24 16 0.21
25 17 0.23
26 2 0.03
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:70634003 original size:37 final size:37
Alignment explanation
Indices: 70633896--70634003 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
70633886 GGAAATATAT
* *
70633896 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
70633932 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
*
70633969 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
70634004 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 11 0.16
37 57 0.84
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
Found at i:70634953 original size:44 final size:46
Alignment explanation
Indices: 70634834--70634958 Score: 137
Period size: 49 Copynumber: 2.7 Consensus size: 46
70634824 ATATATCGAG
* * * *
70634834 GCTGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATCTATCA
1 GCTGATGCCATGTCCTAGATAGGTCTTACACTGACACACAACTA-CA
* * *
70634881 GTGTCGATGCCATGTCCTAGACAAGTCTTACACTGACACACAAC-A-A
1 G-CT-GATGCCATGTCCTAGATAGGTCTTACACTGACACACAACTACA
*
70634927 GCTGACGCCATGTCCTAGATAGGTCTTACACT
1 GCTGATGCCATGTCCTAGATAGGTCTTACACT
70634959 AGCTTGAATA
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
44 26 0.40
45 1 0.02
46 2 0.03
47 1 0.02
48 2 0.03
49 33 0.51
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (46 bp):
GCTGATGCCATGTCCTAGATAGGTCTTACACTGACACACAACTACA
Found at i:70641656 original size:45 final size:45
Alignment explanation
Indices: 70641604--70641690 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
70641594 TATGTAATTT
*
70641604 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCC
*
70641649 GAACTCATTGAGTTATGGTCTGAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACA
70641691 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCC
Found at i:70648647 original size:18 final size:18
Alignment explanation
Indices: 70648606--70648647 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
70648596 CAAGGCCAGT
70648606 ATGGGCTATGTGGGCCAC
1 ATGGGCTATGTGGGCCAC
*
70648624 ACGGGC-ATGTGGGCCCAC
1 ATGGGCTATGTGGG-CCAC
70648642 ATGGGC
1 ATGGGC
70648648 CACGACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.17, C:0.26, G:0.40, T:0.17
Consensus pattern (18 bp):
ATGGGCTATGTGGGCCAC
Found at i:70663998 original size:26 final size:26
Alignment explanation
Indices: 70663969--70664023 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
70663959 AGGGATCTTC
70663969 AATAATCCTATAGGTTTAGTTTAAGT
1 AATAATCCTATAGGTTTAGTTTAAGT
70663995 AATAATCCTATAGGTTTAGTTTAAGT
1 AATAATCCTATAGGTTTAGTTTAAGT
70664021 AAT
1 AAT
70664024 TGCAAGGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (26 bp):
AATAATCCTATAGGTTTAGTTTAAGT
Found at i:70668411 original size:42 final size:43
Alignment explanation
Indices: 70668306--70668460 Score: 113
Period size: 44 Copynumber: 3.6 Consensus size: 43
70668296 CAATGCCGAC
* * * * *
70668306 GTCCCAGACGTGGTCTTACATGTAATCT-AATATCGACG-CAACT
1 GTCCCAGACATGGTCTTACACGAAATATCAA-ATCGATGCCAA-T
* * * *
70668349 ATCCCATACA-GGTTCTTACAC-AAA-ATCAAATATGATGCCGAT
1 GTCCCAGACATGG-TCTTACACGAAATATCAAAT-CGATGCCAAT
* *
70668391 GTCTCAGACATGGTCTTACACGTAAATCTCAAATCGATGCCAAT
1 GTCCCAGACATGGTCTTACACG-AAATATCAAATCGATGCCAAT
* *
70668435 GTCCCAGACGTGGTCTTACAGGAAAT
1 GTCCCAGACATGGTCTTACACGAAAT
70668461 CACATATAAA
Statistics
Matches: 86, Mismatches: 18, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
41 3 0.03
42 25 0.29
43 22 0.26
44 30 0.35
45 6 0.07
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATATCAAATCGATGCCAAT
Found at i:70668462 original size:86 final size:85
Alignment explanation
Indices: 70668298--70668454 Score: 185
Period size: 85 Copynumber: 1.8 Consensus size: 85
70668288 AGCTCGTACA
* * * *
70668298 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATCTAATATCGACGCAACTATCCCATACAGGTT
1 ATGCCGACGTCCCAGACATGGTCTTACACGTAATCTAATATCGACGCAACTATCCCAGACAGGGT
70668363 CTTACACAAAATCAAATATG
66 CTTACACAAAATCAAATATG
* * * *
70668383 ATGCCGATGTCTCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAA-TGTCCCAGAC-G
1 ATGCCGACGTCCCAGACATGGTCTTACACGT-AATCT-AATATCGACG-CAACTATCCCAGACAG
70668445 TGGTCTTACA
63 -GGTCTTACA
70668455 GGAAATCACA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
85 28 0.47
86 27 0.45
87 5 0.08
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACACGTAATCTAATATCGACGCAACTATCCCAGACAGGGT
CTTACACAAAATCAAATATG
Found at i:70673085 original size:48 final size:48
Alignment explanation
Indices: 70673030--70673322 Score: 419
Period size: 48 Copynumber: 6.1 Consensus size: 48
70673020 TATATATGTG
* * *
70673030 TGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
70673078 TGTGGTGAAA-CCGAATGGCGAATGTGAAATATGTATGAGATATGTATA
1 TGTGGT-AAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* **
70673126 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTTATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
70673174 TGTGGTAAAGCCGAATGG-TGAATGTAAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATGAGATATGTATA
* *
70673222 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * *
70673270 TGTGGTGAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
70673318 TGTGG
1 TGTGG
70673323 ATATGTATAT
Statistics
Matches: 217, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
47 4 0.02
48 210 0.97
49 3 0.01
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
Found at i:70673188 original size:96 final size:96
Alignment explanation
Indices: 70673030--70673453 Score: 616
Period size: 96 Copynumber: 4.3 Consensus size: 96
70673020 TATATATGTG
*
70673030 TGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTGAAA-CCGAAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGT-AAAGCCGAAT
70673094 GGCGAATGTGAAATATGTATGAGATATGTATA
65 GGCGAATGTGAAATATGTATGAGATATGTATA
*
70673126 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTTATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
* *
70673191 GTGAATGTAAAATATGTATGAGATATGTATA
66 GCGAATGTGAAATATGTATGAGATATGTATA
*
70673222 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTGAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
70673287 GCGAATGTGAAATATGTATGAGATATGTATATGTGGATATGTATA
66 GCGAATGTG-AA-A--TAT--G-TATG---A----GATATGTATA
70673332 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
** *
70673397 GTTAATGTGAAATATATATGAGATATGTATA
66 GCGAATGTGAAATATGTATGAGATATGTATA
* *
70673428 TGTGGTAAGGCCGAATGGCCAATGTG
1 TGTGGTAAAGCCGAATGGCTAATGTG
70673454 GTGAATATGA
Statistics
Matches: 299, Mismatches: 14, Indels: 30
0.87 0.04 0.09
Matches are distributed among these distances:
95 3 0.01
96 192 0.64
97 2 0.01
98 1 0.00
100 4 0.01
102 1 0.00
103 8 0.03
106 4 0.01
108 1 0.00
109 2 0.01
110 81 0.27
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.32
Consensus pattern (96 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATG
GCGAATGTGAAATATGTATGAGATATGTATA
Found at i:70673327 original size:14 final size:14
Alignment explanation
Indices: 70673308--70673336 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70673298 ATATGTATGA
70673308 GATATGTATATGTG
1 GATATGTATATGTG
70673322 GATATGTATATGTG
1 GATATGTATATGTG
70673336 G
1 G
70673337 TAAAGCCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (14 bp):
GATATGTATATGTG
Found at i:70673329 original size:62 final size:62
Alignment explanation
Indices: 70673251--70673384 Score: 214
Period size: 62 Copynumber: 2.1 Consensus size: 62
70673241 TAATGTGAAA
* *
70673251 TATATGTGTGATATGTATATGTGGTGAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTG-GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
* * *
70673314 TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
70673376 TATATGTGG
1 TATATGTGG
70673385 TAAAGCCGAA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
62 58 0.88
63 8 0.12
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.35
Consensus pattern (62 bp):
TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
Found at i:70673334 original size:110 final size:110
Alignment explanation
Indices: 70673212--70673432 Score: 406
Period size: 110 Copynumber: 2.0 Consensus size: 110
70673202 ATATGTATGA
*
70673212 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTG
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
*
70673277 AAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTG
66 AAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTG
70673322 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
**
70673387 AAGCCGAATGGTTAATGTGAAATATATATGAGATATGTATATGTG
66 AAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTG
70673432 G
1 G
70673433 TAAGGCCGAA
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (110 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
AAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTG
Found at i:70673341 original size:158 final size:159
Alignment explanation
Indices: 70673155--70673453 Score: 478
Period size: 158 Copynumber: 1.9 Consensus size: 159
70673145 TAATGTGAAA
* *
70673155 TATATGTGTTATATGTATATGTGGTAAAGCCGAATGG-TGAATGTAAAATATGTATGAGATATGT
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTAAAATATATATGAGATATGT
* *
70673219 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTGAA-GCCG
65 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT-AAGGCCG
*
70673283 AATGGCGAATGTGAAATATGTATGAGATATG
129 AATGGCCAATGTGAAATATGTATGAGATATG
* * *
70673314 TATATGTG-GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGATATGTA
*
70673378 TATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATGAGATATGTATATGTGGTAAGGCCGAA
66 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAGGCCGAA
70673443 TGGCCAATGTG
131 TGGCCAATGTG
70673454 GTGAATATGA
Statistics
Matches: 129, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
157 2 0.02
158 118 0.91
159 9 0.07
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (159 bp):
TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGATATGTA
TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAGGCCGAA
TGGCCAATGTGAAATATGTATGAGATATG
Found at i:70673384 original size:48 final size:47
Alignment explanation
Indices: 70673314--70673453 Score: 226
Period size: 48 Copynumber: 2.9 Consensus size: 47
70673304 ATGAGATATG
70673314 TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
70673361 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAA
1 TATATGTG-GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* * *
70673409 TATATATGAGATATGTATATGTGGTAAGGCCGAATGGCCAATGTG
1 TATATGTG-GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
70673454 GTGAATATGA
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
47 8 0.09
48 78 0.91
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (47 bp):
TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:70673488 original size:47 final size:47
Alignment explanation
Indices: 70673424--70673616 Score: 269
Period size: 47 Copynumber: 4.1 Consensus size: 47
70673414 ATGAGATATG
* *
70673424 TATATGTGGTAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCA
* * * * *
70673471 TATATGTGATTAGGCCGAATGGCCTATGTGATAAATGTGAGCATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCA
* * *
70673518 TATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAGCATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCA
* * *
70673565 TATGTGTGATAAGGCCGAATGGCCAATGTGCTGAATATGAAAATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCA
70673612 TATAT
1 TATAT
70673617 ACAGTAAAGC
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCA
Found at i:70673611 original size:94 final size:94
Alignment explanation
Indices: 70673376--70673616 Score: 270
Period size: 94 Copynumber: 2.6 Consensus size: 94
70673366 GTGTGATATG
* * ** * * * *
70673376 TATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATGAGATATG--TATATGTGGTAAGGC
1 TATATGTGATAAGGCCGAATGGCCAATGTG--ATAAATATGA-AAATGCATATATGTGATAAGAC
*
70673439 CGAATGGCCAATGTGGTGAATATGAACATGCA
63 CGAATGGCCAATGTGATGAATATGAACATGCA
* * * **
70673471 TATATGTGATTAGGCCGAATGGCCTATGTGATAAATGTGAGCATGCATATATGTGATAAGACCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATAAATATGAAAATGCATATATGTGATAAGACCGA
* *
70673536 ATGGCCAATGTGATGAATGTGAGCATGCA
66 ATGGCCAATGTGATGAATATGAACATGCA
* * *
70673565 TATGTGTGATAAGGCCGAATGGCCAATGTGCTGAATATGAAAATGCATATAT
1 TATATGTGATAAGGCCGAATGGCCAATGTGATAAATATGAAAATGCATATAT
70673617 ACAGTAAAGC
Statistics
Matches: 121, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
92 3 0.02
93 8 0.07
94 86 0.71
95 24 0.20
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.29
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATAAATATGAAAATGCATATATGTGATAAGACCGA
ATGGCCAATGTGATGAATATGAACATGCA
Found at i:70673847 original size:37 final size:37
Alignment explanation
Indices: 70673797--70673948 Score: 250
Period size: 37 Copynumber: 4.1 Consensus size: 37
70673787 GGAAATATAT
*
70673797 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
70673834 TCCGGGTAAGACCCGATGACTACGTGTGGAGGTTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
70673871 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
70673908 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
70673945 TCCG
1 TCCG
70673949 AGCTAAAGGT
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:70683601 original size:45 final size:45
Alignment explanation
Indices: 70683469--70683601 Score: 212
Period size: 45 Copynumber: 3.0 Consensus size: 45
70683459 GAATCAAATA
* * * * *
70683469 CAATGCCAATGTTCCAGACATGGTCTTACACGTAACCACATAGAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATAT
*
70683514 CAATGCCAACGTCCCAGACATGGTCTTACACAAAAACACATATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATAT
70683559 CAATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATAT
70683602 TAGAATCCTG
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.21
Consensus pattern (45 bp):
CAATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATAT
Found at i:70698245 original size:47 final size:47
Alignment explanation
Indices: 70698187--70698308 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
70698177 GCATTGGTAC
* *
70698187 TAAGACAAGGATACCATGTACGACCATGTTTGGAATATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
70698234 TAAGACAAGGATACCATGTAAGACCATGTTTTGAACATGGCATTTGT
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
70698281 TTAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
70698309 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:70698416 original size:55 final size:54
Alignment explanation
Indices: 70698287--70698483 Score: 197
Period size: 54 Copynumber: 3.6 Consensus size: 54
70698277 TTGTTTAGAT
* * * * *
70698287 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATCTCCTGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGAC
** * * *
70698341 AAGGAAATCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGAC
1 AAGGATCTCCTGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGAC
* *
70698396 AAAGG-TCTCCTGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAA-AGC
1 -AAGGATCTCCTGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGA-C
*
70698449 AAGGATAC-CAC-GTAAGACCATGTCAAGACATGGCA
1 AAGGAT-CTC-CTGTAAGACCATGCCAAGACATGGCA
70698484 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
52 5 0.04
53 29 0.24
54 43 0.35
55 41 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATCTCCTGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGAC
Found at i:70710714 original size:41 final size:41
Alignment explanation
Indices: 70710635--70710715 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
70710625 ATAATAGTGA
**
70710635 TATTCGGGCTTTAAACCTAGCAAGCATTATGCTGGTGAATG
1 TATTCGGGCTTTAAACCTAGCAAGCATTATGCCAGTGAATG
** *
70710676 TATTCGGGCTTTATGCCTAGCAGGC-TTATTGCCAGTGAAT
1 TATTCGGGCTTTAAACCTAGCAAGCATTA-TGCCAGTGAAT
70710716 ATAAAATCAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 3 0.09
41 31 0.91
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (41 bp):
TATTCGGGCTTTAAACCTAGCAAGCATTATGCCAGTGAATG
Found at i:70712767 original size:148 final size:148
Alignment explanation
Indices: 70712499--70712795 Score: 594
Period size: 148 Copynumber: 2.0 Consensus size: 148
70712489 CACAACATGA
70712499 ACTTACCTCGATACTAAAATGGAAAAAAGGGACCTAACCGTCAATTTTACGTTTTCTCCCGTTCT
1 ACTTACCTCGATACTAAAATGGAAAAAAGGGACCTAACCGTCAATTTTACGTTTTCTCCCGTTCT
70712564 AGGCCTGAATCTTGTTTTCTTTGATCTATAATATCACATTTAGCCTATTTATTAGTCACATTATT
66 AGGCCTGAATCTTGTTTTCTTTGATCTATAATATCACATTTAGCCTATTTATTAGTCACATTATT
70712629 CAATTTGATCCAAAACTC
131 CAATTTGATCCAAAACTC
70712647 ACTTACCTCGATACTAAAATGGAAAAAAGGGACCTAACCGTCAATTTTACGTTTTCTCCCGTTCT
1 ACTTACCTCGATACTAAAATGGAAAAAAGGGACCTAACCGTCAATTTTACGTTTTCTCCCGTTCT
70712712 AGGCCTGAATCTTGTTTTCTTTGATCTATAATATCACATTTAGCCTATTTATTAGTCACATTATT
66 AGGCCTGAATCTTGTTTTCTTTGATCTATAATATCACATTTAGCCTATTTATTAGTCACATTATT
70712777 CAATTTGATCCAAAACTC
131 CAATTTGATCCAAAACTC
70712795 A
1 A
70712796 TATTATGGCA
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
148 149 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (148 bp):
ACTTACCTCGATACTAAAATGGAAAAAAGGGACCTAACCGTCAATTTTACGTTTTCTCCCGTTCT
AGGCCTGAATCTTGTTTTCTTTGATCTATAATATCACATTTAGCCTATTTATTAGTCACATTATT
CAATTTGATCCAAAACTC
Found at i:70713005 original size:26 final size:26
Alignment explanation
Indices: 70712957--70713008 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
70712947 TAACTCATAA
*
70712957 ATTTCACATTTCACAAATTAGTCCCT
1 ATTTCACATTTCACAAATAAGTCCCT
*
70712983 ATTTCACATTTTCATAAA-AAGTCCCT
1 ATTTCACA-TTTCACAAATAAGTCCCT
70713009 TAATAAAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (26 bp):
ATTTCACATTTCACAAATAAGTCCCT
Found at i:70714815 original size:27 final size:27
Alignment explanation
Indices: 70714646--70714814 Score: 250
Period size: 27 Copynumber: 6.3 Consensus size: 27
70714636 ATTACCAAAG
* *
70714646 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
70714673 CACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
70714700 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
70714727 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
70714754 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
70714781 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
70714808 TACCCTC
1 TACCCTC
70714815 AATTATGAAA
Statistics
Matches: 129, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
26 1 0.01
27 128 0.99
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:70714876 original size:27 final size:27
Alignment explanation
Indices: 70714622--70715026 Score: 220
Period size: 27 Copynumber: 15.1 Consensus size: 27
70714612 ACTAAAATGT
* * *
70714622 CCTCAATTTGTAAAATTACCAAAGTAC
1 CCTCGATTTATAAAATTACCAAATTAC
* * **
70714649 CCTCGATTTACAGAATTACC-GTTTCAC
1 CCTCGATTTATAAAATTACCAAATT-AC
* **
70714676 CCTCGATTTACAAAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCAAATTAC
* **
70714703 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCAAATTAC
* * * * **
70714730 CCTCGATTTACAGAGTTACTATTTTAC
1 CCTCGATTTATAAAATTACCAAATTAC
* **
70714757 CCTCGATTTACAAAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCAAATTAC
* **
70714784 CCTC-AGTTTACAAAATTACCATTTTAC
1 CCTCGA-TTTATAAAATTACCAAATTAC
* * *
70714811 CCTC-AATTATGAAATTACTGAAA-TAC
1 CCTCGATTTATAAAATTAC-CAAATTAC
* * * *
70714837 CC-CCAGTTGTAAAATTACCAAAGTAC
1 CCTCGATTTATAAAATTACCAAATTAC
* *
70714863 CCCCGATTTATAAAATTACCCAAA-TAT
1 CCTCGATTTATAAAATTA-CCAAATTAC
*
70714890 CCTCGATTTGTAAAATTACCGAAA-TAC
1 CCTCGATTTATAAAATTACC-AAATTAC
** *
70714917 CCTC-AGTTTGCAAAATTACTGAAA-TAC
1 CCTCGA-TTTATAAAATTAC-CAAATTAC
** *
70714944 CCTCGATCAATAAAATTACCAAAATACC
1 CCTCGATTTATAAAATTACCAAATTA-C
* * * *
70714972 CCTTG-TTTGTAAAATTACCAAAATGC
1 CCTCGATTTATAAAATTACCAAATTAC
* **
70714998 CCTTGGCTTATAAAATTACCGAAA-TAC
1 CCTCGATTTATAAAATTACC-AAATTAC
70715025 CC
1 CC
70715027 CTGTAGGGTA
Statistics
Matches: 313, Mismatches: 49, Indels: 32
0.79 0.12 0.08
Matches are distributed among these distances:
25 4 0.01
26 45 0.14
27 247 0.79
28 17 0.05
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (27 bp):
CCTCGATTTATAAAATTACCAAATTAC
Found at i:70715041 original size:27 final size:27
Alignment explanation
Indices: 70715011--70715312 Score: 376
Period size: 27 Copynumber: 11.3 Consensus size: 27
70715001 TGGCTTATAA
70715011 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
70715038 AATTACTGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70715065 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70715092 AATTACCGGAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70715119 AATTATCGAATTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70715146 AATAACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70715173 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
70715200 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
70715227 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
70715254 AATTA-CTAAAAACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
70715280 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
70715306 AATTACC
1 AATTACC
70715313 ATTTTGCCCT
Statistics
Matches: 240, Mismatches: 33, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 38 0.16
27 202 0.84
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:70716757 original size:46 final size:46
Alignment explanation
Indices: 70716689--70716779 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
70716679 TATATATACA
* * *
70716689 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATC
* * * *
70716735 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATAT
70716780 ATACACTTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.10, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATC
Found at i:70716824 original size:47 final size:47
Alignment explanation
Indices: 70716773--70717037 Score: 406
Period size: 47 Copynumber: 5.6 Consensus size: 47
70716763 TCGGCTTCGC
* * *
70716773 CACATATATACACT-TTCACGTTCATCACATTGGCCATTCTGCCTTAT
1 CACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
70716820 CACATAAATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
70716867 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
70716914 CACACATATGCATGGTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
70716961 CACATATATGCTTGTTCATATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * **
70717008 CACACATATACACATTCACATTCATCACAT
1 CACATATATGCATGTTCACATTCATCACAT
70717038 AAAATCCTAA
Statistics
Matches: 200, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 199 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:70716871 original size:22 final size:22
Alignment explanation
Indices: 70716843--70716965 Score: 69
Period size: 22 Copynumber: 5.3 Consensus size: 22
70716833 GTTCACATTC
70716843 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
70716865 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
70716889 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70716912 ATCACACATAT-G-CA-T-GGTCACATT
1 AT--CACAT-TGGCCATTCGG-C-C-TT
70716936 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70716959 ATCACAT
1 ATCACAT
70716966 ATATGCTTGT
Statistics
Matches: 77, Mismatches: 6, Indels: 36
0.65 0.05 0.30
Matches are distributed among these distances:
21 2 0.03
22 22 0.29
23 18 0.23
24 18 0.23
25 15 0.19
26 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70719842 original size:22 final size:22
Alignment explanation
Indices: 70719812--70719873 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
70719802 AAGCCTTCTG
* *
70719812 ATTATGGCTTTGTGTCAACCTA
1 ATTATGGCTCTGTGCCAACCTA
*
70719834 CA-TATGGCTCTATGCCAACCTA
1 -ATTATGGCTCTGTGCCAACCTA
*
70719856 ATTATGGCTGTGTGCCAA
1 ATTATGGCTCTGTGCCAA
70719874 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (22 bp):
ATTATGGCTCTGTGCCAACCTA
Found at i:70720061 original size:27 final size:27
Alignment explanation
Indices: 70720031--70720130 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
70720021 ATTCTGTTAA
* * *
70720031 GTGGCTTTGCCACATTATTTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
70720058 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
70720085 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
70720112 GTGACTAT--CACAATATCTG
1 GTGGCTATGCCACAATATCTG
70720131 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
25 11 0.17
26 8 0.12
27 39 0.61
28 6 0.09
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:70720089 original size:54 final size:51
Alignment explanation
Indices: 70720031--70720130 Score: 128
Period size: 54 Copynumber: 1.9 Consensus size: 51
70720021 ATTCTGTTAA
* * * * *
70720031 GTGGCTTTGCCACATTATTTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTAT--CAC-AATATCTGTTCTG
70720085 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATCACAATATCTG
70720131 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 8 0.20
52 3 0.07
54 30 0.73
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (51 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTATCACAATATCTGTTCTG
Found at i:70720339 original size:6 final size:6
Alignment explanation
Indices: 70720262--70720361 Score: 62
Period size: 6 Copynumber: 16.3 Consensus size: 6
70720252 TTGCATTCAC
* * * * *
70720262 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTA ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
70720311 -TTACCTG ATACTA ATTTTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
70720360 AT
1 AT
70720362 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
5 5 0.07
6 56 0.80
7 7 0.10
8 2 0.03
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:70720347 original size:37 final size:31
Alignment explanation
Indices: 70720262--70720341 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
70720252 TTGCATTCAC
70720262 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
* **
70720293 ATTCTAATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
* *
70720324 ATTTTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
70720342 ATTCTGATTC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:70731643 original size:30 final size:30
Alignment explanation
Indices: 70731609--70731665 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
70731599 TTGGGGCAAG
*
70731609 CCGTGTGTCACACACAG-CCTAGAAACATGC
1 CCGTGTCTCACACAC-GTCCTAGAAACATGC
70731639 CCGTGTCTCACACACGTCCTAGAAACA
1 CCGTGTCTCACACACGTCCTAGAAACA
70731666 CACTTGTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.18
Consensus pattern (30 bp):
CCGTGTCTCACACACGTCCTAGAAACATGC
Found at i:70733435 original size:26 final size:26
Alignment explanation
Indices: 70733405--70733456 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
70733395 AAGAAGAAAG
70733405 CCAAGGAATTAGGTATTCCATTCGGT
1 CCAAGGAATTAGGTATTCCATTCGGT
70733431 CCAAGGAATTAGGTATTCCATTCGGT
1 CCAAGGAATTAGGTATTCCATTCGGT
70733457 TACTTGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
CCAAGGAATTAGGTATTCCATTCGGT
Found at i:70736203 original size:27 final size:28
Alignment explanation
Indices: 70736184--70736364 Score: 199
Period size: 28 Copynumber: 6.5 Consensus size: 28
70736174 ATATATTAAG
* *
70736184 TCCGCACACTCAGTGCTATATAATCAAC
1 TCCGCACACTTAGTGCTATATAATCAAA
70736212 T-CGCACACTTAGTGCTATATAATCAAA
1 TCCGCACACTTAGTGCTATATAATCAAA
* *
70736239 CCCGCACACTTAGTGCTACATAATCAAA
1 TCCGCACACTTAGTGCTATATAATCAAA
*
70736267 -CTCGCACACTTAGTGCTACATAATCAAA
1 TC-CGCACACTTAGTGCTATATAATCAAA
* *
70736295 -CTCACACACTTAGTGCTACATAATCAAA
1 TC-CGCACACTTAGTGCTATATAATCAAA
* * *
70736323 -CTCGCACACTTAGTGCTGTACAATTTAAA
1 TC-CGCACACTTAGTGCTATATAA-TCAAA
*
70736352 CCCGCACACTTAG
1 TCCGCACACTTAG
70736365 CGCCAATCTC
Statistics
Matches: 139, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
27 25 0.18
28 98 0.71
29 15 0.11
30 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.25
Consensus pattern (28 bp):
TCCGCACACTTAGTGCTATATAATCAAA
Found at i:70736253 original size:28 final size:28
Alignment explanation
Indices: 70736186--70736339 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
70736176 ATATTAAGTC
* *
70736186 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
70736213 CGCACACTTAGTGCTATATAATCAAACC
1 CGCACACTTAGTGCTACATAATCAAACT
70736241 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
70736269 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70736297 CACACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
70736325 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70736340 GTACAATTTA
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
27 22 0.18
28 98 0.82
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:70736290 original size:56 final size:56
Alignment explanation
Indices: 70736185--70736364 Score: 265
Period size: 56 Copynumber: 3.2 Consensus size: 56
70736175 TATATTAAGT
* * *
70736185 CCGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAAC
70736240 CCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAAC
* * * *
70736296 TCACACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTGTACA-ATTTAAAC
1 CCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGC--TACATAATCAAAC
70736353 CCGCACACTTAG
1 CCGCACACTTAG
70736365 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
55 22 0.19
56 71 0.63
57 16 0.14
58 4 0.04
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.25
Consensus pattern (56 bp):
CCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAAC
Found at i:70753692 original size:40 final size:40
Alignment explanation
Indices: 70753615--70753872 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
70753605 AAACCAAGTA
* *
70753615 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
70753654 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70753694 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70753734 CCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70753774 CCTTCCGGTCTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * * * *
70753814 CCTTCGGGGCTTATTCC-GAAATTAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
70753854 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70753873 TTATCATCCG
Statistics
Matches: 195, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 17 0.09
40 177 0.91
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70760364 original size:27 final size:27
Alignment explanation
Indices: 70760333--70760386 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
70760323 ATTACCAGTG
*
70760333 ATTGGCTAAGAAAATTTGGGAGATTAT
1 ATTGGCTAAGAAAAATTGGGAGATTAT
70760360 ATTGGCTAAGAAAAATTGGGAGATTAT
1 ATTGGCTAAGAAAAATTGGGAGATTAT
70760387 GTATAAGAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (27 bp):
ATTGGCTAAGAAAAATTGGGAGATTAT
Found at i:70761285 original size:67 final size:66
Alignment explanation
Indices: 70761143--70761317 Score: 179
Period size: 67 Copynumber: 2.6 Consensus size: 66
70761133 CAGGAGTTCG
* * * *
70761143 CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGCAACATGTGGAGTCC
1 CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATCC
70761208 T
66 T
* ** * * * ** *
70761209 CCAAAACATTAAACATTGGGTACATTATTTAAGATCGTATCTTAGCTATGGAAAAATATGGAATC
1 CTAGGACATTAAACATGGGGTACATT-TGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATC
*
70761274 TT
65 CT
* * *
70761276 CTAGGACATTACATATGGGGTACATTGTGTAAGACCATAGCT
1 CTAGGACATTAAACATGGGGTACATT-TGTAAGACCAAAGCT
70761318 CAGTTCGAGT
Statistics
Matches: 83, Mismatches: 25, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
66 22 0.27
67 61 0.73
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (66 bp):
CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATCC
T
Found at i:70762996 original size:26 final size:26
Alignment explanation
Indices: 70762955--70763011 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
70762945 TATGTAAATC
* *
70762955 AAATGAGCTATAATGTTGAGTATATG
1 AAATGAGCTATAATGTTGAGCATATA
* *
70762981 AAATGAGTTATGATGTTGAGCATATA
1 AAATGAGCTATAATGTTGAGCATATA
70763007 AAATG
1 AAATG
70763012 GATAGTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.33
Consensus pattern (26 bp):
AAATGAGCTATAATGTTGAGCATATA
Found at i:70763342 original size:39 final size:39
Alignment explanation
Indices: 70763288--70763365 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
70763278 TACTTATGTA
*
70763288 ATTGTTTTGTCTATTTTGTAGATCATCGGAAGACTCATT
1 ATTGTTTTGTCTATTTTGTAGATCATCGGAAGAATCATT
70763327 ATTGTTTTGTCTATTTTGTAGATCATCGGAAGAATCATT
1 ATTGTTTTGTCTATTTTGTAGATCATCGGAAGAATCATT
70763366 CCGTTGGGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (39 bp):
ATTGTTTTGTCTATTTTGTAGATCATCGGAAGAATCATT
Found at i:70764369 original size:34 final size:34
Alignment explanation
Indices: 70764329--70764397 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
70764319 ATAAAAAGAG
70764329 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
1 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
70764363 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
1 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
70764397 A
1 A
70764398 CCGTAGCTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (34 bp):
AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
Found at i:70770745 original size:28 final size:28
Alignment explanation
Indices: 70770705--70770796 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
70770695 TGGGAAGTAG
* *
70770705 TTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* *
70770733 TTGGGCCTGATGGGCCATACGAATGGGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* * *
70770761 TTGGGCCAGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
70770789 TTGGGCCT
1 TTGGGCCT
70770797 AAAGGGGCCG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.21, C:0.16, G:0.38, T:0.25
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGAGA
Found at i:70771143 original size:27 final size:27
Alignment explanation
Indices: 70771113--70771586 Score: 366
Period size: 27 Copynumber: 17.7 Consensus size: 27
70771103 TAATAAAGAG
* *
70771113 AAATTACTAAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
70771140 AAATTACCGAAATACCATCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
** *
70771166 AAATTACTGAAATACTGTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
70771193 AAATTACCT-AAATACCCTCGA-TTGTG
1 AAATTA-CTGAAATACCCTCGATTTGTA
* *
70771219 AAATT-TTGAAAATATCCTCGATTTGTA
1 AAATTACTG-AAATACCCTCGATTTGTA
** *
70771246 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
70771273 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
70771300 AAGTTATTAAAATACCC-CTGATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
*
70771327 AAATTA-TCGAAATACCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
**
70771353 AAATTACTGAAATA-CCTTTACTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
70771380 AAATTA-TCGAAATACCCCCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
70771407 AAATTA-TCGAAACACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * * *
70771434 AAATTACTAAAACACCCTCCATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
70771461 AAAGTA-TCGAAATACCCTCAATTAGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
70771488 AAATTA-TCGAAATACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* ** *
70771515 AAATTATTGAAATACCCTAAACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
70771542 AAATTA-TCAAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
70771569 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
70771587 TCTAGTGTAA
Statistics
Matches: 363, Mismatches: 62, Indels: 44
0.77 0.13 0.09
Matches are distributed among these distances:
24 1 0.00
25 4 0.01
26 63 0.17
27 286 0.79
28 9 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:70771296 original size:54 final size:54
Alignment explanation
Indices: 70771122--70771586 Score: 410
Period size: 54 Copynumber: 8.7 Consensus size: 54
70771112 GAAATTACTA
* * *
70771122 AAATATCCTCGATTTGTAAAATTACCGAAATACCATCGA-TTGTGAAATTA-CTG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-G
** * * * *
70771175 AAATACTGTTGATTTGTAAAATTACCTAAATACCCTCGA-TTGTGAAATT-TTG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* * * *
70771227 AAAATATCCTCGATTTGTAAAATTACCAAAATACCC-CTGATTTGTGAAATTACCG
1 -AAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTTGTAAAATTATCG
* * ***
70771282 AAACACCCTCGATTTGTAAAGTTATTAAAATACCC-CTGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTTGTAAAATTATCG
* * **
70771336 AAATACCCTCGA-TTGTGAAATTACTGAAATA-CCTTTACTTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTTGTAAAATTATCG
* * * * *
70771389 AAATACCCCCGATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTA-CTA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-G
* * * * * * *
70771443 AAACACCCTCCATTTATAAAAGTATCGAAATACCCTCAATTAGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* ** ** * *
70771497 AAATACCCTCAATTTGTAAAATTATTGAAATACCCTAAACTTGTAAAATTATCA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* *
70771551 AAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
70771587 TCTAGTGTAA
Statistics
Matches: 342, Mismatches: 58, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
52 5 0.01
53 118 0.35
54 213 0.62
55 6 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
Found at i:70771341 original size:81 final size:81
Alignment explanation
Indices: 70771113--70771586 Score: 412
Period size: 81 Copynumber: 5.9 Consensus size: 81
70771103 TAATAAAGAG
* * * * * *
70771113 AAATTACTAAAATATCCTCGATTTGTAAAATTACCGAAATA-CCATCGA-TTGTGAAATTA-CTG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCT-GATTTGTAAAATTATC-G
** *
70771175 AAATACTGTTGATTTGTA
64 AAATACCCTCGATTTGTA
* * * * * *
70771193 AAATTACCT-AAATACCCTCGA-TTGTGAAATTTTGAAAATA-TCCTCGATTTGTAAAATTACCA
1 AAATTA-CTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCT-GATTTGTAAAATTATCG
*
70771255 AAATACCC-CTGATTTGTG
64 AAATACCCTC-GATTTGTA
* * * *
70771273 AAATTACCGAAACACCCTCGATTTGTAAAGTTATTAAAATACCCCTGATTTGTAAAATTATCGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGAA
*
70771338 ATACCCTCGA-TTGTG
66 ATACCCTCGATTTGTA
** * *
70771353 AAATTACTGAAATA-CCTTTACTTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTATCGA
1 AAATTACTGAAATACCCTCGA-TTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGA
* *
70771417 AACACCCTCAATTTGTA
65 AATACCCTCGATTTGTA
* * * * * * * *
70771434 AAATTACTAAAACACCCTCCATTTATAAAAGTATCGAAATA-CCCTCAATTAGTAAAATTATCGA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCT-GATTTGTAAAATTATCGA
*
70771498 AATACCCTCAATTTGTA
65 AATACCCTCGATTTGTA
* ** * * * *
70771515 AAATTATTGAAATACCCTAAACTTGTAAAATTATCAAAATACCCTTG-TAGTGTAAAATTACCGA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCTGAT-TTGTAAAATTATCGA
70771579 AATACCCT
65 AATACCCT
70771587 TCTAGTGTAA
Statistics
Matches: 322, Mismatches: 58, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
79 24 0.07
80 126 0.39
81 161 0.50
82 11 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGAA
ATACCCTCGATTTGTA
Found at i:70771352 original size:134 final size:132
Alignment explanation
Indices: 70771113--70771520 Score: 446
Period size: 134 Copynumber: 3.0 Consensus size: 132
70771103 TAATAAAGAG
* * * * *
70771113 AAATTACTAAAATA-TCCTCGATTTGTAAAATTACCGAAATACCATCGA-TTGTGAAATTACTGA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCGAAACACCCTCGATTTGT-AAATTACTAA
*** * * *
70771176 AATACTGTTGATTTGTAAAATTACCTAAATACCCTCGATTGTGAAATT-TTGAAAATATCCTCGA
64 AATACCCCTGATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATTG-AAATA-CCTCAA
70771240 TTTGTA
127 TTTGTA
* *
70771246 AAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAACACCCTCGATTTGTAAAGTTATTAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAA-TTACTAAA
* * *
70771311 ATACCCCTGATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTACTGAAATACCTTTACTT
65 ATACCCCTGATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATTGAAATACC-TCAATT
70771376 TGTA
129 TGTA
* * * * *
70771380 AAATTATCGAAATACCCCCGATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAACACCCTCGATTTGT-AAATTACTAAA
* * * * * * *
70771445 ACA-CCCTCCATTTATAAAAGTATCGAAATACCCTCAATTAGTAAAATTATCGAAATACCCTCAA
65 ATACCCCT-GATTTGTAAAATTATCGAAATACCCTCGATT-GTGAAATTATTGAAATA-CCTCAA
70771509 TTTGTA
127 TTTGTA
70771515 AAATTA
1 AAATTA
70771521 TTGAAATACC
Statistics
Matches: 233, Mismatches: 33, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
133 48 0.21
134 150 0.64
135 33 0.14
136 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (132 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAATTACTAAAA
TACCCCTGATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATTGAAATACCTCAATTTG
TA
Found at i:70771587 original size:27 final size:27
Alignment explanation
Indices: 70771538--70771599 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
70771528 ACCCTAAACT
* *
70771538 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTCTAG
*
70771565 TGTAAAATTACCGAAATACCCTTCTAG
1 TGTAAAATTACCAAAATACCCTTCTAG
70771592 TGTAAAAT
1 TGTAAAAT
70771600 GACTGCATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTCTAG
Found at i:70771861 original size:50 final size:50
Alignment explanation
Indices: 70771777--70771874 Score: 160
Period size: 50 Copynumber: 2.0 Consensus size: 50
70771767 ATTGGGTATT
* *
70771777 GTCATTCTGCATATACGTGTGATGACTGAGCATGACATTCACAACATATG
1 GTCATTCTGCATACACGTGTGATGACTGAACATGACATTCACAACATATG
* *
70771827 GTCATTCTGCATACACGTGTGATGATTGAACATGACATTCACGACATA
1 GTCATTCTGCATACACGTGTGATGACTGAACATGACATTCACAACATA
70771875 CTGCATGGGT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (50 bp):
GTCATTCTGCATACACGTGTGATGACTGAACATGACATTCACAACATATG
Found at i:70776553 original size:27 final size:27
Alignment explanation
Indices: 70776523--70776700 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70776513 ATATTGAGTC
* * * *
70776523 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70776550 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70776577 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* * *
70776605 CGCACACTTAGTGCTGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* ***
70776632 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70776659 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70776686 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70776701 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70784526 original size:27 final size:27
Alignment explanation
Indices: 70784494--70784671 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
70784484 ATATTGAGTC
* * **
70784494 CGCACACTCAGTGCTATATTTTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
70784521 CGCACACTTAGTGCTACGTAATCAAGT
1 CGCACACTTAGTGCTACATAATCAACT
*
70784548 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
70784576 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
70784603 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
70784630 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
70784657 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70784672 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:70790415 original size:38 final size:38
Alignment explanation
Indices: 70790364--70790438 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
70790354 AGTATGAAAT
70790364 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
1 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
** *
70790402 GAAATGTATGAGATGTGTTTAGCAGCAAAAGCACAAA
1 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAA
70790439 CTTCAACAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.20
Consensus pattern (38 bp):
GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
Found at i:70797938 original size:26 final size:27
Alignment explanation
Indices: 70797900--70797999 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
70797890 TAATAATGCA
** *
70797900 GCATAGCTGCCAGAAACAGTAAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* * *
70797927 GCA-AGCCTCCAGTATCAGTAATTGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
*
70797953 GCATAGCCACCAGTAACAGTGAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* *
70797980 ACATAGTCACCAGT-ACAGTA
1 GCATAGCCACCAGTAACAGTA
70798000 CTTCATCCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
26 26 0.43
27 34 0.57
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
GCATAGCCACCAGTAACAGTAAATGTG
Found at i:70798629 original size:27 final size:27
Alignment explanation
Indices: 70798165--70798634 Score: 407
Period size: 27 Copynumber: 17.6 Consensus size: 27
70798155 TATTACGATC
*
70798165 ATTTTACAAAAC-GAGGGTATTTCGGTA
1 ATTTTACAAATCAG-GGGTATTTCGGTA
* *
70798192 ATTTTATC-AATCGGGGGTATTTTGGTA
1 ATTTTA-CAAATCAGGGGTATTTCGGTA
* * *
70798219 ATTTCACAAGTCAGGGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* *
70798246 ATTTTAC-AACCTGGGAGTATTTCGGTA
1 ATTTTACAAATCAGGG-GTATTTCGGTA
* *
70798273 ATTTCACAAATCAGGGGTATTTCAGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* *
70798300 ATTTT-CAAA--AGAGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * *
70798324 ATTTCACAAATTAGTGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * **
70798351 AATTCACAAATTAGGGGTATTTTAGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
**
70798378 ATTTTACAAATCAGGGGTATTTCGACA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * *
70798405 ATTTCACAAGTCAGGGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * *
70798432 ATTTTACAACTTAGGAGTATTTCGGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * *
70798459 ATTTCATAAAGCAGGGGTATTTCAGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
** *
70798486 ATTTTACAAA--AAAGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * * *
70798511 GTTTCACAAATTAGTGGTATTTCTGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * *
70798538 ATTTCACAAATTAGAGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* *
70798565 ATTTTACAAATCAGGGGCATTTTGGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
*
70798592 ATTTTACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* *
70798619 ATTTTATAAATTAGGG
1 ATTTTACAAATCAGGG
70798635 TCTTAACGAC
Statistics
Matches: 359, Mismatches: 74, Indels: 20
0.79 0.16 0.04
Matches are distributed among these distances:
24 16 0.04
25 23 0.06
26 10 0.03
27 302 0.84
28 8 0.02
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (27 bp):
ATTTTACAAATCAGGGGTATTTCGGTA
Found at i:70798632 original size:81 final size:81
Alignment explanation
Indices: 70798152--70798622 Score: 449
Period size: 81 Copynumber: 5.9 Consensus size: 81
70798142 TACCTTATAA
* * * * * *
70798152 GGGTATTACGATCATTTTACAAAAC-GAGGGTATTTCGGTAATTTTATC-AATCGGGGGTATTTT
1 GGGTATTTCGATAATTTTACAAATCAG-GGGTATTTCGATAATTTCA-CAAATCAGGGGTATTTT
*
70798215 GGTAATTTCACAAGTCAG
64 GGTAATTTCACAAATCAG
* * * **
70798233 GGGTATTTCGATAATTTTAC-AACCTGGGAGTATTTCGGTAATTTCACAAATCAGGGGTATTTCA
1 GGGTATTTCGATAATTTTACAAATCAGGG-GTATTTCGATAATTTCACAAATCAGGGGTATTTTG
*
70798297 GTAATTT-TCAAA--AG
65 GTAATTTCACAAATCAG
* * * * * * *
70798311 AGGTATTTCGATAATTTCACAAATTAGTGGTATTTCGATAAATTCACAAATTAGGGGTATTTTAG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
*
70798376 TAATTTTACAAATCAG
66 TAATTTCACAAATCAG
* * * * * * * *
70798392 GGGTATTTCGACAATTTCACAAGTCAGGGGTATTTCGATAATTTTACAACTTAGGAGTATTTCGG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
* *
70798457 TAATTTCATAAAGCAG
66 TAATTTCACAAATCAG
** * * *
70798473 GGGTATTTC-AGTAATTTTACAAA--AAAGGTATTTCGATAGTTTCACAAATTAGTGGTATTTCT
1 GGGTATTTCGA-TAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTT-T
*
70798535 -GTAATTTCACAAATTAG
64 GGTAATTTCACAAATCAG
* * * * *
70798552 AGGTATTTCGATAATTTTACAAATCAGGGGCATTTTGGTAATTTTACAAATCAGGGGTATTTTGG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
70798617 TAATTT
66 TAATTT
70798623 TATAAATTAG
Statistics
Matches: 319, Mismatches: 58, Indels: 26
0.79 0.14 0.06
Matches are distributed among these distances:
78 58 0.18
79 72 0.23
80 12 0.04
81 177 0.55
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
TAATTTCACAAATCAG
Found at i:70798878 original size:19 final size:19
Alignment explanation
Indices: 70798846--70798883 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
70798836 CGTGTGGGCC
70798846 CACGAGCCCATTCGGCCCA
1 CACGAGCCCATTCGGCCCA
70798865 CACGA-CCCATTTCGGCCCA
1 CACGAGCCCA-TTCGGCCCA
70798884 TCGAGGCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.21, C:0.47, G:0.18, T:0.13
Consensus pattern (19 bp):
CACGAGCCCATTCGGCCCA
Found at i:70801030 original size:6 final size:6
Alignment explanation
Indices: 70801013--70801042 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
70801003 AAATGCTTTT
*
70801013 TCCTTC TTCTTC TCCTTC TCCTTC TCCTTC
1 TCCTTC TCCTTC TCCTTC TCCTTC TCCTTC
70801043 CTTTCATTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (6 bp):
TCCTTC
Found at i:70807025 original size:41 final size:40
Alignment explanation
Indices: 70806972--70807132 Score: 141
Period size: 41 Copynumber: 3.9 Consensus size: 40
70806962 CTTAGCACCA
70806972 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACTACTG
1 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGAC-ACTG
* * * *
70807013 GCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATGACACTA
1 GCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACTG
* * * *
70807053 GCTCTAAAAAGCCCTTCAAAACTAAGTTCGGTTATTAG-CACTG
1 GCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACTG
70807096 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTTAGAC
1 GCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
70807133 CCCGATTAGC
Statistics
Matches: 95, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
39 1 0.01
40 16 0.17
41 47 0.49
42 18 0.19
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (40 bp):
GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACTG
Found at i:70809993 original size:11 final size:11
Alignment explanation
Indices: 70809977--70810020 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
70809967 AAGGCGTCAT
70809977 AGTGAAAAGTA
1 AGTGAAAAGTA
70809988 AGTGAAAACGTCA
1 AGTGAAAA-GT-A
70810001 TAGTGAAAAGTA
1 -AGTGAAAAGTA
*
70810013 AGTTAAAA
1 AGTGAAAA
70810021 CCTAAAACCC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
11 15 0.52
12 3 0.10
13 3 0.10
14 8 0.28
ACGTcount: A:0.52, C:0.05, G:0.23, T:0.20
Consensus pattern (11 bp):
AGTGAAAAGTA
Found at i:70810001 original size:25 final size:25
Alignment explanation
Indices: 70809971--70810021 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
70809961 AGATAAAAGG
70809971 CGTCATAGTGAAAAGTAAGTGAAAA
1 CGTCATAGTGAAAAGTAAGTGAAAA
*
70809996 CGTCATAGTGAAAAGTAAGTTAAAA
1 CGTCATAGTGAAAAGTAAGTGAAAA
70810021 C
1 C
70810022 CTAAAACCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.47, C:0.10, G:0.22, T:0.22
Consensus pattern (25 bp):
CGTCATAGTGAAAAGTAAGTGAAAA
Found at i:70810007 original size:14 final size:14
Alignment explanation
Indices: 70809971--70810009 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 14
70809961 AGATAAAAGG
70809971 CGTCATAGTGAAAA
1 CGTCATAGTGAAAA
70809985 -GT-A-AGTGAAAA
1 CGTCATAGTGAAAA
70809996 CGTCATAGTGAAAA
1 CGTCATAGTGAAAA
70810010 GTAAGTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 8 0.36
12 3 0.14
13 3 0.14
14 8 0.36
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.21
Consensus pattern (14 bp):
CGTCATAGTGAAAA
Found at i:70814673 original size:41 final size:41
Alignment explanation
Indices: 70814607--70814686 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
70814597 TGCAGGGGTT
*
70814607 TTTACACGGCCTGGCACACGCCCGTGTCCCTGGCCCGTGTCC
1 TTTACACGGCCTGGCACACGCCCGTGT-CCTAGCCCGTGTCC
70814649 TTTACACGGCCAT-G-ACACGCCCGTGTCCTAGCCCGTGT
1 TTTACACGGCC-TGGCACACGCCCGTGTCCTAGCCCGTGT
70814687 GCACAAACCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
40 11 0.31
41 12 0.33
42 12 0.33
43 1 0.03
ACGTcount: A:0.12, C:0.40, G:0.25, T:0.23
Consensus pattern (41 bp):
TTTACACGGCCTGGCACACGCCCGTGTCCTAGCCCGTGTCC
Found at i:70816959 original size:46 final size:46
Alignment explanation
Indices: 70816855--70817073 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 46
70816845 GGGTAAGGTT
* * * * *
70816855 CCGATGCCATGTCCTAGACATAGTCTTACACT-AGCTCATATATCAAG-
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGA-CTTATGTCTCGAGC
* *
70816902 TCGATGCCATGTCCCAGA-ATGGTCTTACATTGAC-TATGATCTCGTAG-
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGACTTATG-TCTCG-AGC
*
70816949 CTGATGCATGTCCCAGACATGTCTTACACTGACTTATGTCTCGAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTGACTTATGTCTCGAGC
* * *
70816995 CCGATGCATGTCCCAGACATGTCTTACACTAGCCCT-TGTCTCAATG-
1 CCGATGCATGTCCCAGACATGTCTTACACT-GACTTATGTCTCGA-GC
* *
70817041 CCAATGCAATGTCCCAAACATGGTCTTACACTG
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACTG
70817074 GCTCTCATAA
Statistics
Matches: 145, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
45 4 0.03
46 85 0.59
47 46 0.32
48 10 0.07
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGACTTATGTCTCGAGC
Found at i:70817107 original size:140 final size:140
Alignment explanation
Indices: 70816855--70817118 Score: 318
Period size: 140 Copynumber: 1.9 Consensus size: 140
70816845 GGGTAAGGTT
* * * * * *
70816855 CCGATGCCATGTCCTAGACATAGTCTTACACTAGCTCATATATCAAGTCGATGCCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATAGTCTTACACTAGCCCATATATCAAGCCAATGCAATGTCCCAAA
* * * * *
70816920 ATGGTCTTACATTGACTATGATCTCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGACTTA
66 ATGGTCTTACACTGACTATCATATCGTAGCCGATGAATGTCCCAGACATGTCTTACACTGACTTA
70816985 TGTCTCGAGC
131 TGTCTCGAGC
* * *
70816995 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTTGTCTCAATGCCAATGCAATGTCCCAA
1 CCGATGCCATGTCCCAGACATAGTCTTACACTAGCCCATATATCAA-GCCAATGCAATGTCCCAA
* * * *
70817058 ACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGAATGTCCTAGACATGTCTTACACT
65 A-ATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGAATGTCCCAGACATGTCTTACACT
70817119 AGCTCACACA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
138 20 0.19
139 28 0.27
140 54 0.52
141 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (140 bp):
CCGATGCCATGTCCCAGACATAGTCTTACACTAGCCCATATATCAAGCCAATGCAATGTCCCAAA
ATGGTCTTACACTGACTATCATATCGTAGCCGATGAATGTCCCAGACATGTCTTACACTGACTTA
TGTCTCGAGC
Found at i:70824927 original size:93 final size:93
Alignment explanation
Indices: 70824817--70824988 Score: 276
Period size: 93 Copynumber: 1.8 Consensus size: 93
70824807 CGCCCATAAG
*
70824817 CGAACTCGTACTCAACTCAACGAGCTCAGG-CGTTCGCATCAATAAGTGAACTCGGACTCAACTC
1 CGAACTCGTACTCAACTCAACGAGCTC-GGACATTCGCATCAATAAGTGAACTCGGACTCAACTC
70824881 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* * *
70824910 CGAACTCAG-ACTCAACTCAACGAGTTCGGACATTCTCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTC-GTACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTC
70824974 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
70824989 TCAATCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 2 0.03
93 70 0.96
94 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGTACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70824983 original size:46 final size:46
Alignment explanation
Indices: 70824810--70824985 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
70824800 TGTAACCCGC
* * * *
70824810 CCATAAGCGAACTCGTACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACAT
* *
70824856 CAATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * *
70824906 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
70824949 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70824986 TGCTCAATCA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.55
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:70825004 original size:46 final size:46
Alignment explanation
Indices: 70824859--70825004 Score: 149
Period size: 46 Copynumber: 3.2 Consensus size: 46
70824849 TTCGCATCAA
70824859 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCC
* * * ***
70824907 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTC-TCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
70824951 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAATCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCC
70824999 T-AGTGA
1 TAAGTGA
70825005 CATGTCACTT
Statistics
Matches: 80, Mismatches: 12, Indels: 14
0.75 0.11 0.13
Matches are distributed among these distances:
43 3 0.04
44 2 0.03
45 2 0.03
46 35 0.44
47 29 0.36
48 9 0.11
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
Found at i:70832484 original size:92 final size:92
Alignment explanation
Indices: 70832373--70832543 Score: 299
Period size: 92 Copynumber: 1.9 Consensus size: 92
70832363 CGCCCATAAG
* *
70832373 CGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTC
70832437 AACGAGTTCGGATGCCTATTACATCTCA
65 AACGAGTTCGGATGCCTATTACATCTCA
*
70832465 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70832530 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70832544 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 74 0.99
93 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTATTACATCTCA
Found at i:70832538 original size:46 final size:47
Alignment explanation
Indices: 70832366--70832538 Score: 205
Period size: 46 Copynumber: 3.7 Consensus size: 47
70832356 TGTAACCCGC
* * *
70832366 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
* * *
70832412 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GA-GAC-ATTCGCAT
*
70832461 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGA-ACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
*
70832504 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
70832539 GATGCTCAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 1 0.01
45 4 0.04
46 85 0.79
47 2 0.02
48 2 0.02
49 5 0.05
50 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
Found at i:70845311 original size:23 final size:23
Alignment explanation
Indices: 70845291--70845347 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
70845281 ATCGCAGCGT
70845291 AGCTGCTAATAGTAATCCAGCAA
1 AGCTGCTAATAGTAATCCAGCAA
*
70845314 AGCTGCTAATAGTAA-CGCAACAA
1 AGCTGCTAATAGTAATC-CAGCAA
*
70845337 AGCTGGTAATA
1 AGCTGCTAATA
70845348 ATGGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 1 0.03
23 30 0.97
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (23 bp):
AGCTGCTAATAGTAATCCAGCAA
Found at i:70880248 original size:42 final size:43
Alignment explanation
Indices: 70880189--70880306 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 43
70880179 GATTTGAGAT
* * *
70880189 TTACGTGTAAGATCATGTCTGGGACA-TCGGCATCG-TATTTGG
1 TTACATGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTGA
*
70880231 TTTCATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGA
*
70880274 TTACATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TTACATGTAAGACCATGTCTGGGACAG-TGGCAT
70880307 TGTATGAGCT
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGA
Found at i:70885566 original size:52 final size:52
Alignment explanation
Indices: 70885488--70885592 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
70885478 ATTCATATCA
70885488 TTTATTTAATATCATTTTAACATATAAAAATAAGTGGAAAACAAATATTAAC
1 TTTATTTAATATCATTTTAACATATAAAAATAAGTGGAAAACAAATATTAAC
70885540 TTTATTTAATATCATTTTAACATATAAAAATAAGTGGAAAACAAATATTAAC
1 TTTATTTAATATCATTTTAACATATAAAAATAAGTGGAAAACAAATATTAAC
70885592 T
1 T
70885593 GTCCGTGCTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.37
Consensus pattern (52 bp):
TTTATTTAATATCATTTTAACATATAAAAATAAGTGGAAAACAAATATTAAC
Found at i:70887869 original size:29 final size:28
Alignment explanation
Indices: 70887822--70887876 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
70887812 AACTTAAAAA
* *
70887822 TTTTAATTAATTACATAAATTACCTATT
1 TTTTAATTAAATACATAAATGACCTATT
*
70887850 TTTTCAATTAAATACGTAAATGACCTA
1 TTTT-AATTAAATACATAAATGACCTA
70887877 AAATCTCTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.44
Consensus pattern (28 bp):
TTTTAATTAAATACATAAATGACCTATT
Found at i:70888033 original size:13 final size:13
Alignment explanation
Indices: 70888015--70888057 Score: 61
Period size: 13 Copynumber: 3.2 Consensus size: 13
70888005 ACCCTATTAC
70888015 TTTCTTCTTTCTT
1 TTTCTTCTTTCTT
70888028 TTTCTTCTTTCTTT
1 TTTCTTCTTTC-TT
70888042 TTTCTT-TTTACTT
1 TTTCTTCTTT-CTT
70888055 TTT
1 TTT
70888058 TTAAGTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCTTCTTTCTT
Found at i:70888048 original size:7 final size:7
Alignment explanation
Indices: 70888015--70888058 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
70888005 ACCCTATTAC
*
70888015 TTTCTTC
1 TTTCTTT
70888022 TTTC-TT
1 TTTCTTT
*
70888028 TTTCTTC
1 TTTCTTT
70888035 TTTCTTT
1 TTTCTTT
70888042 TTTCTTT
1 TTTCTTT
*
70888049 TTACTTT
1 TTTCTTT
70888056 TTT
1 TTT
70888059 TAAGTTTTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
6 5 0.16
7 26 0.84
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTCTTT
Found at i:70888198 original size:21 final size:20
Alignment explanation
Indices: 70888170--70888208 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
70888160 TTGTTTGGAA
* *
70888170 ATTTTAATTTTTTTAATTTG
1 ATTTTAATATTTTAAATTTG
70888190 ATTTATAATATTTTAAATT
1 ATTT-TAATATTTTAAATT
70888209 ATAATTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (20 bp):
ATTTTAATATTTTAAATTTG
Found at i:70888217 original size:14 final size:15
Alignment explanation
Indices: 70888192--70888224 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
70888182 TTAATTTGAT
70888192 TTATAATATTTTAAA
1 TTATAATATTTTAAA
70888207 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
70888221 TTAT
1 TTAT
70888225 TTTTAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:70888392 original size:20 final size:20
Alignment explanation
Indices: 70888369--70888413 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
70888359 ACTTTATTTA
**
70888369 AAAAACATTTATTAAAAAGT
1 AAAAACATAAATTAAAAAGT
* *
70888389 AAAAATATAAATTAAAAATT
1 AAAAACATAAATTAAAAAGT
70888409 AAAAA
1 AAAAA
70888414 TATATATTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAAACATAAATTAAAAAGT
Found at i:70888414 original size:20 final size:20
Alignment explanation
Indices: 70888379--70888422 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
70888369 AAAAACATTT
70888379 ATTAAAAAGTAAAAATATAA
1 ATTAAAAAGTAAAAATATAA
* *
70888399 ATTAAAAATTAAAAATATAT
1 ATTAAAAAGTAAAAATATAA
70888419 ATTA
1 ATTA
70888423 TAACTGGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (20 bp):
ATTAAAAAGTAAAAATATAA
Found at i:70889199 original size:20 final size:20
Alignment explanation
Indices: 70889171--70889209 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
70889161 AAGTTTTTTA
70889171 AAAATTTAAATAT-ATTAAG
1 AAAATTTAAATATAATTAAG
*
70889190 AAAATGTTAAGTATAATTAA
1 AAAAT-TTAAATATAATTAA
70889210 TTTTAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 7 0.41
21 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (20 bp):
AAAATTTAAATATAATTAAG
Found at i:70889384 original size:19 final size:19
Alignment explanation
Indices: 70889360--70889400 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
70889350 CAATTTTAAA
* * *
70889360 ATTTTAATATATTTAATAT
1 ATTTTAAAAAATTAAATAT
70889379 ATTTTAAAAAATTAAATAT
1 ATTTTAAAAAATTAAATAT
70889398 ATT
1 ATT
70889401 AAAAAAATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTTAAAAAATTAAATAT
Found at i:70889402 original size:17 final size:18
Alignment explanation
Indices: 70889372--70889406 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
70889362 TTTAATATAT
*
70889372 TTAATATATTTTAAAAAA
1 TTAATATATATTAAAAAA
70889390 TTAA-ATATATTAAAAAA
1 TTAATATATATTAAAAAA
70889407 ATGTTAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAATATATATTAAAAAA
Found at i:70889426 original size:71 final size:70
Alignment explanation
Indices: 70889166--70889454 Score: 250
Period size: 71 Copynumber: 4.1 Consensus size: 70
70889156 TTTAAAAGTT
* * * *
70889166 TTTTAAAAATTTAAATATATTAAGAAAATGTTAAGTATAATTAATTTTAAAAGTTTAATATATTT
1 TTTTAAAAAATTAAATATATTAAAAAAATGTTAAGTATAACTAATTTTAAAATTTTAATATATTT
*
70889231 GAA-A
66 AAATA
* * *** * * * ** *
70889235 TTTTAATATACTTAATATATATTTTTAACAGGTAAAG-ATAAAAAAGATTT----TTTTAATATA
1 TTTTAA-AAAATTAA-ATATATTAAAAAAATGTTAAGTATAACTAA-TTTTAAAATTTTAATATA
70889295 TTTAAAT-
63 TTTAAATA
* *
70889302 TTTTAAAAAAATTTAAAAATTAAATATAATAAAAATGTTAAGTATAACCAATTTTAAAATTTTAA
1 TTTT-AAAAAA-TT--AAA-TATAT-TAA-AAAAATGTTAAGTATAACTAATTTTAAAATTTTAA
70889367 TATATTTAATATA
59 TATATTTAA-ATA
*
70889380 TTTTAAAAAATTAAATATATTAAAAAAATGTTAAGTATAACTAATTTTAAAATTTTAATATATTC
1 TTTTAAAAAATTAAATATATTAAAAAAATGTTAAGTATAACTAATTTTAAAATTTTAATATATTT
70889445 AATATA
66 AA-ATA
70889451 TTTT
1 TTTT
70889455 TTAAAAATAT
Statistics
Matches: 174, Mismatches: 28, Indels: 34
0.74 0.12 0.14
Matches are distributed among these distances:
67 20 0.11
68 4 0.02
69 7 0.04
70 18 0.10
71 69 0.40
72 14 0.08
73 10 0.06
74 3 0.02
76 17 0.10
77 8 0.05
78 4 0.02
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (70 bp):
TTTTAAAAAATTAAATATATTAAAAAAATGTTAAGTATAACTAATTTTAAAATTTTAATATATTT
AAATA
Found at i:70889735 original size:57 final size:57
Alignment explanation
Indices: 70889671--70889787 Score: 162
Period size: 57 Copynumber: 2.1 Consensus size: 57
70889661 ACTAATTTTA
* * * ** * * *
70889671 AAATTTTAATATATTTTTTAATAGGTAAGGACAGCAAAGGGTTTTTTTAATATATTT
1 AAATTTTAATATAATTTTTAATACGTAAAGACAAAAAAAGGTTTTTTAAATATATGT
70889728 AAATTTTAATATAATTTTTAATACGTAAAGACAAAAAAAGGTTTTTTAAATATATGT
1 AAATTTTAATATAATTTTTAATACGTAAAGACAAAAAAAGGTTTTTTAAATATATGT
70889785 AAA
1 AAA
70889788 ACTCTATGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.44, C:0.03, G:0.11, T:0.42
Consensus pattern (57 bp):
AAATTTTAATATAATTTTTAATACGTAAAGACAAAAAAAGGTTTTTTAAATATATGT
Found at i:70899035 original size:57 final size:57
Alignment explanation
Indices: 70898974--70899088 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
70898964 ATACCAAATG
70898974 TACAACCATTTTACAACCAATACATACACCAAATAAGCCATAACATTATCAACCAAT
1 TACAACCATTTTACAACCAATACATACACCAAATAAGCCATAACATTATCAACCAAT
* *
70899031 TACAACCATTTTACAACCAATACATATACCAAATAAGGCATAACATTATCAACCAAT
1 TACAACCATTTTACAACCAATACATACACCAAATAAGCCATAACATTATCAACCAAT
70899088 T
1 T
70899089 TCAAGCTTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (57 bp):
TACAACCATTTTACAACCAATACATACACCAAATAAGCCATAACATTATCAACCAAT
Found at i:70899990 original size:43 final size:43
Alignment explanation
Indices: 70899870--70900028 Score: 184
Period size: 43 Copynumber: 3.7 Consensus size: 43
70899860 AGCTCGTACA
* *
70899870 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATA-CG
* * *
70899913 ATGTC-ACTGTCCCAGATAG-GGTCTTATACG-AAATCAAATACG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAATCAAATACG
70899955 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCA-AA-TACG
*
70899999 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
70900029 ATAACACATA
Statistics
Matches: 99, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 25 0.25
43 38 0.38
44 34 0.34
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATACG
Found at i:70900012 original size:44 final size:42
Alignment explanation
Indices: 70899870--70900028 Score: 173
Period size: 44 Copynumber: 3.7 Consensus size: 42
70899860 AGCTCGTACA
* *
70899870 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATC-AA-ATCG
* * *
70899913 ATGTC-ACTGTCCCAGATAG-GGTCTTATACG-AAATCAAATACG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAATCAAAT-CG
70899955 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCA-AA-TCG
*
70899999 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
70900029 ATAACACATA
Statistics
Matches: 98, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
41 3 0.03
42 27 0.28
43 33 0.34
44 34 0.35
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATCG
Found at i:70903955 original size:40 final size:40
Alignment explanation
Indices: 70903773--70903995 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
70903763 TCCTCGTTCA
* * * * *
70903773 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
70903812 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70903852 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
70903892 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
70903932 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
70903972 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70903996 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:70904004 original size:41 final size:41
Alignment explanation
Indices: 70903927--70904004 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
70903917 TTAGTATCTC
* * *
70903927 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
70903968 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
70904005 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:70911480 original size:40 final size:40
Alignment explanation
Indices: 70911298--70911520 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
70911288 TCCTCGTTCA
* * * * *
70911298 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
70911337 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70911377 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
70911417 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
70911457 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
70911497 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70911521 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:70911529 original size:41 final size:41
Alignment explanation
Indices: 70911452--70911529 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
70911442 TTAGTATCTC
* * *
70911452 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
70911493 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
70911530 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:70923954 original size:21 final size:21
Alignment explanation
Indices: 70923915--70923954 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70923905 CCTTAAATTG
*
70923915 TAAATCTTAAACCCTAAACAT
1 TAAATCTTAAACCCAAAACAT
* *
70923936 TAAATCTTCAATCCAAAAC
1 TAAATCTTAAACCCAAAAC
70923955 CATAAAACCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAATCTTAAACCCAAAACAT
Found at i:70937864 original size:40 final size:40
Alignment explanation
Indices: 70937682--70937904 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
70937672 TCCTCGTTCA
* * * * *
70937682 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
70937721 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70937761 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
70937801 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
70937841 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
70937881 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70937905 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:70937913 original size:41 final size:41
Alignment explanation
Indices: 70937836--70937913 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
70937826 TTAGTATCTC
* * *
70937836 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
70937877 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
70937914 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:70950516 original size:46 final size:44
Alignment explanation
Indices: 70950449--70950622 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 44
70950439 TGTAACCCGC
70950449 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TT-GCAT
* *
70950495 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CTTGCAT
* *** * * *
70950541 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTGCAT
* *
70950587 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
70950623 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 28 0.26
46 46 0.43
47 28 0.26
48 2 0.02
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTGCAT
Found at i:70950615 original size:92 final size:93
Alignment explanation
Indices: 70950457--70950626 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
70950447 GCCCATAAGT
* *
70950457 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70950522 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
70950550 GAACTCGGACTCAACTCAACGAGTTCGGACATT-TCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
70950614 CGAGTTCGGATGC
66 CGAGCTCGGATGC
70950627 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 41 0.58
93 30 0.42
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:70955047 original size:13 final size:13
Alignment explanation
Indices: 70955009--70955048 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
70954999 AACAAAGTAA
* *
70955009 GACACGGCCGTGC
1 GACACGGTCGTGT
70955022 GACACGGTCGTGT
1 GACACGGTCGTGT
70955035 GACACGGTCGTGT
1 GACACGGTCGTGT
70955048 G
1 G
70955049 CACCAACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.15, C:0.28, G:0.40, T:0.17
Consensus pattern (13 bp):
GACACGGTCGTGT
Found at i:70955307 original size:19 final size:18
Alignment explanation
Indices: 70955272--70955307 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
70955262 CTTCATTTTT
*
70955272 CTCCCCTCTCTCTCCCTC
1 CTCCCCTCTCTCACCCTC
70955290 CTCCCCTCTTCTCACCCT
1 CTCCCCTC-TCTCACCCT
70955308 TGCGCACCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.03, C:0.64, G:0.00, T:0.33
Consensus pattern (18 bp):
CTCCCCTCTCTCACCCTC
Found at i:70959387 original size:21 final size:21
Alignment explanation
Indices: 70959361--70959413 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
70959351 AGTGATGACG
* *
70959361 GTGAGATTAGTTACTGTAGCA
1 GTGAGATTAGATACTGTAACA
70959382 GTGAGATTAGATACTGTAACA
1 GTGAGATTAGATACTGTAACA
70959403 GTGAGATTAGA
1 GTGAGATTAGA
70959414 AACAATAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAACA
Done.