Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 22 of 356
Found at i:7615631 original size:139 final size:138
Alignment explanation
Indices: 7615380--7615688 Score: 363
Period size: 139 Copynumber: 2.2 Consensus size: 138
7615370 GTGCTGATGC
* * * *
7615380 CATGTCCTAGATATGGTCTTACACTGGCTCAAATCTCAAGTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCTCAAATCTCAAGCCGATGCCATGTCCCAGACATGGTC
** * *
7615445 TTACACTGACTATCATCCCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGG-CTTACGT-C
65 TTACACTGACTATCATAACGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCCTTA--TAA
7615508 TCGAGGCCAATG
128 T-GAGGCCAATG
***
7615520 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACAT-GTC
1 CATGTCCCAGACATGTCTTACACTAGCTCAAATCTCAA-GCCGATGCCATGTCCCAGACATGGTC
* * * * *
7615584 TTACACTGGCTCTTATAATGTGGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTTATAAT
65 TTACACTGACTATCATAACGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGC-CTTATAAT
* *
7615649 GTGGCCGATG
129 GAGGCCAATG
* *
7615659 CATGTCACAGACATGTCTTACACCAGCTCA
1 CATGTCCCAGACATGTCTTACACTAGCTCA
7615689 CACACAAATA
Statistics
Matches: 144, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
139 106 0.74
140 34 0.24
141 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (138 bp):
CATGTCCCAGACATGTCTTACACTAGCTCAAATCTCAAGCCGATGCCATGTCCCAGACATGGTCT
TACACTGACTATCATAACGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCCTTATAATGA
GGCCAATG
Found at i:7616066 original size:30 final size:30
Alignment explanation
Indices: 7616026--7616082 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7616016 AATTCACATA
* * *
7616026 TTTGGTAAAATAATCATTTTGCCCCTAAAC
1 TTTGGCAAAATAACCATTTTACCCCTAAAC
*
7616056 TTTGGCAAAATGACCATTTTACCCCTA
1 TTTGGCAAAATAACCATTTTACCCCTA
7616083 TGCTAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.35
Consensus pattern (30 bp):
TTTGGCAAAATAACCATTTTACCCCTAAAC
Found at i:7628082 original size:23 final size:21
Alignment explanation
Indices: 7628040--7628082 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7628030 AATTTAGATT
*
7628040 TAAATTATGTAAATTGAATAA
1 TAAATTATGTAAAATGAATAA
*
7628061 TAAATTATTTTAAAATGTAATA
1 TAAATTA-TGTAAAATG-AATA
7628083 TTTCATTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 7 0.39
23 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (21 bp):
TAAATTATGTAAAATGAATAA
Found at i:7628674 original size:60 final size:61
Alignment explanation
Indices: 7628606--7628726 Score: 226
Period size: 60 Copynumber: 2.0 Consensus size: 61
7628596 AATTTTAGTA
*
7628606 ACAAAAGGACCTGATTAATATAAGCTTGATAG-TTAGGGATGCAATTAGAACGATTTGAAG
1 ACAAAAGGACCTAATTAATATAAGCTTGATAGTTTAGGGATGCAATTAGAACGATTTGAAG
7628666 ACAAAAGGACCTAATTAATATAAGCTTGATAGTTTAGGGATGCAATTAGAACGATTTGAAG
1 ACAAAAGGACCTAATTAATATAAGCTTGATAGTTTAGGGATGCAATTAGAACGATTTGAAG
7628727 TTTAGGGACC
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
60 31 0.53
61 28 0.47
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (61 bp):
ACAAAAGGACCTAATTAATATAAGCTTGATAGTTTAGGGATGCAATTAGAACGATTTGAAG
Found at i:7634894 original size:33 final size:33
Alignment explanation
Indices: 7634831--7634894 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
7634821 TTCACTTTCT
* *
7634831 CAATTCAATATCACTTTCAATTCATTTACAAAC
1 CAATTCAATATCACTTTCAATTAATATACAAAC
*
7634864 CAATTCAATTTCACTTTTC-ATTAATATACAA
1 CAATTCAATATCAC-TTTCAATTAATATACAA
7634895 TTCTATATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 23 0.85
34 4 0.15
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (33 bp):
CAATTCAATATCACTTTCAATTAATATACAAAC
Found at i:7635680 original size:3 final size:3
Alignment explanation
Indices: 7635672--7635717 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
7635662 ATATATACAC
* *
7635672 TAA TAA TAA TAA TAA TAA TAA TAA AAA TAA AAA TAA TAA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7635718 TCTTTTTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:7635929 original size:3 final size:3
Alignment explanation
Indices: 7635921--7635954 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
7635911 AATTTATTTG
*
7635921 ATA ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7635955 ATATCTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7640241 original size:46 final size:46
Alignment explanation
Indices: 7640174--7640348 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
7640164 TGTAACCCGC
7640174 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
7640220 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
7640270 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
7640313 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
7640349 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 63 0.58
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:7640294 original size:93 final size:93
Alignment explanation
Indices: 7640182--7640352 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
7640172 GCCCATAAGT
** *
7640182 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7640247 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
7640275 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
7640340 CGAGTTCGGATGC
66 CGAGCTCGGATGC
7640353 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:7645291 original size:12 final size:12
Alignment explanation
Indices: 7645274--7645298 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7645264 ACCCAAAACC
7645274 CTTAGCCCAAAA
1 CTTAGCCCAAAA
7645286 CTTAGCCCAAAA
1 CTTAGCCCAAAA
7645298 C
1 C
7645299 ACTAACCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:7645399 original size:38 final size:38
Alignment explanation
Indices: 7645344--7645432 Score: 151
Period size: 38 Copynumber: 2.3 Consensus size: 38
7645334 AACCCTAATC
*
7645344 CCACCTACTCCATCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
*
7645382 CCACCTTCTCCACCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
*
7645420 CCACCTACACCAC
1 CCACCTACTCCAC
7645433 TATGCCACCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.17, C:0.51, G:0.11, T:0.21
Consensus pattern (38 bp):
CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
Found at i:7646011 original size:3 final size:3
Alignment explanation
Indices: 7645976--7646069 Score: 56
Period size: 3 Copynumber: 31.3 Consensus size: 3
7645966 GAGCTTTGTT
* * *
7645976 TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
*
7646019 TTA TTA TTA TT- TCTCA GGTA TATA TTA TTA TT- TATA TTA TTA TTA
1 TTA TTA TTA TTA T-T-A -TTA T-TA TTA TTA TTA T-TA TTA TTA TTA
7646064 -TA TTA T
1 TTA TTA T
7646070 ATATACCCTC
Statistics
Matches: 71, Mismatches: 8, Indels: 24
0.69 0.08 0.23
Matches are distributed among these distances:
2 9 0.13
3 55 0.77
4 6 0.08
5 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7646071 original size:30 final size:30
Alignment explanation
Indices: 7645977--7646073 Score: 74
Period size: 33 Copynumber: 3.1 Consensus size: 30
7645967 AGCTTTGTTT
* *
7645977 TATTTTTATTT-TATT-TTATTAT-TTTTA
1 TATTATTATTTATATTATTATTATATTATA
* *
7646004 CTATTATTTATATTATTATTATTATTTCTCAGGTATA
1 -TATTA-TTAT-TTA-TATTATTA-TTAT-A-TTATA
7646041 TATTATTATTTATATTATTATTATATTATA
1 TATTATTATTTATATTATTATTATATTATA
7646071 TAT
1 TAT
7646074 ACCCTCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
28 4 0.07
29 4 0.07
30 9 0.17
31 1 0.02
32 7 0.13
33 11 0.20
34 6 0.11
35 4 0.07
36 5 0.09
37 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (30 bp):
TATTATTATTTATATTATTATTATATTATA
Found at i:7646315 original size:18 final size:19
Alignment explanation
Indices: 7646274--7646338 Score: 71
Period size: 18 Copynumber: 3.4 Consensus size: 19
7646264 TTTCTATTAC
* *
7646274 TATTATTATATATTAGTGTA
1 TATTTTTATATA-TAGTATA
*
7646294 TATTTTTATGTATA-TATA
1 TATTTTTATATATAGTATA
7646312 TATTTTTATATATAGTAT-
1 TATTTTTATATATAGTATA
7646330 TATTATTTA
1 TATT-TTTA
7646339 ATTTACTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
18 20 0.51
19 9 0.23
20 10 0.26
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (19 bp):
TATTTTTATATATAGTATA
Found at i:7647322 original size:18 final size:19
Alignment explanation
Indices: 7647288--7647339 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
7647278 TAAAGTAAAG
*
7647288 TAAATAATA-ATACTATATA
1 TAAA-AATATATACTATACA
7647307 TAAAAATATATA-TATACA
1 TAAAAATATATACTATACA
*
7647325 TAAAAATATACACTA
1 TAAAAATATATACTA
7647340 ATATATAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 20 0.69
19 9 0.31
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAAATATATACTATACA
Found at i:7647622 original size:24 final size:24
Alignment explanation
Indices: 7647553--7647632 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 24
7647543 GAGAGGGTAT
* *
7647553 ATATAATATAATAATATAAATAATA
1 ATATAA-ATAATAGTAAAAATAATA
7647578 ATAT--ATAGATGAG-AAATAATAATA
1 ATATAAATA-AT-AGTAAA-AATAATA
7647602 ATATAAATAATAGTAAAAATAATA
1 ATATAAATAATAGTAAAAATAATA
*
7647626 AAATAAA
1 ATATAAA
7647633 AAAAATAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
22 3 0.07
23 4 0.09
24 27 0.59
25 9 0.20
26 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (24 bp):
ATATAAATAATAGTAAAAATAATA
Found at i:7647628 original size:9 final size:9
Alignment explanation
Indices: 7647562--7647640 Score: 54
Period size: 9 Copynumber: 8.6 Consensus size: 9
7647552 TATATAATAT
*
7647562 AATAATATA
1 AATAATAAA
7647571 AATAATAATA
1 AATAATAA-A
* *
7647581 TATAGATGAGA
1 AATA-AT-AAA
*
7647592 AATAATAAT
1 AATAATAAA
7647601 AAT-ATAAA
1 AATAATAAA
*
7647609 TAATAGTAAA
1 -AATAATAAA
7647619 AATAAT-AA
1 AATAATAAA
*
7647627 AATAAAAAA
1 AATAATAAA
7647636 AATAA
1 AATAA
7647641 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
8 11 0.20
9 26 0.48
10 10 0.19
11 6 0.11
12 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (9 bp):
AATAATAAA
Found at i:7648198 original size:13 final size:13
Alignment explanation
Indices: 7648180--7648239 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
7648170 TAGTGGTGTA
7648180 GGTGGCCAAGGTG
1 GGTGGCCAAGGTG
***
7648193 GGTGGCCAACAAG
1 GGTGGCCAAGGTG
*** *
7648206 GGTGGTGGA-GTA
1 GGTGGCCAAGGTG
7648218 GGTGGCCAAGGTG
1 GGTGGCCAAGGTG
7648231 GGTGGCCAA
1 GGTGGCCAA
7648240 CAAGGGTGGT
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
12 6 0.18
13 27 0.82
ACGTcount: A:0.20, C:0.15, G:0.50, T:0.15
Consensus pattern (13 bp):
GGTGGCCAAGGTG
Found at i:7648220 original size:38 final size:38
Alignment explanation
Indices: 7648172--7648260 Score: 169
Period size: 38 Copynumber: 2.3 Consensus size: 38
7648162 TGGTGGCATA
*
7648172 GTGGTGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
1 GTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
7648210 GTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
1 GTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
7648248 GTGGAGTAGGTGG
1 GTGGAGTAGGTGG
7648261 GATTAGGGTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.19, C:0.11, G:0.52, T:0.18
Consensus pattern (38 bp):
GTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAGGGTG
Found at i:7648867 original size:42 final size:44
Alignment explanation
Indices: 7648760--7648879 Score: 138
Period size: 42 Copynumber: 2.8 Consensus size: 44
7648750 TATTTGATTT
* * *
7648760 TCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCA
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
** * * *
7648804 TTGATCTGTTTCCCTACTGCTTAGGGGTTT-A-GATCTGTAAAC-
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCT-TGTAAACA
7648846 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
7648880 TTTGAAAATT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.46
43 7 0.11
44 26 0.43
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (44 bp):
TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
Found at i:7648897 original size:42 final size:42
Alignment explanation
Indices: 7648764--7648903 Score: 113
Period size: 42 Copynumber: 3.3 Consensus size: 42
7648754 TGATTTTCAA
* * **
7648764 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTG-TCATCATTG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAAT--TTG
* * * * * ***
7648807 ATCTGTTTCCCTACTGCTTAGGGGTTT-AGATCTGTAAACTCAA
1 -CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTG-AAAATTTG
7648850 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTG
*
7648892 GCTGTTACCCTA
1 CCTGTTACCCTA
7648904 TNNNNNNNNN
Statistics
Matches: 72, Mismatches: 21, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
42 39 0.54
43 9 0.12
44 23 0.32
45 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (42 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTG
Found at i:7659264 original size:90 final size:86
Alignment explanation
Indices: 7659170--7659399 Score: 205
Period size: 90 Copynumber: 2.6 Consensus size: 86
7659160 AATAATTAAG
* * * * * *
7659170 TTTTTTTGTCATTTAATTGGGTACATAAAATTTTAAAATATATAAAAATACCCTAAAAATCTTTT
1 TTTTTTTGTCACTTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCAT-AAAA-C-TTT
*
7659235 TAGAAAAAGCAATTAAGCCCCT-T
63 TAAAAAAAGCAATTAAGCCCCTAT
* ** * * *
7659258 CTTTTTTATTTCACTTAATTGAGTATTTAAACTTTCAAAATACATCAAAAGACCATTAAACTTTT
1 -TTTTTT-TGTCACTTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCATAAAACTTTT
*
7659323 AAAAAAAGCAATTAAGCTCCTAT
64 AAAAAAAGCAATTAAGCCCCTAT
* ** * *
7659346 TTTTTTTGT-ACTCAATTGAGTATTTGAACTGTT-AAAATACATAAAAAGTACCAT
1 TTTTTTTGTCACTTAATTGAGTACATAAAAT-TTCAAAATACATAAAAAG-ACCAT
7659400 TTGACCATTA
Statistics
Matches: 119, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
85 33 0.28
86 9 0.08
87 29 0.24
88 2 0.02
89 9 0.08
90 37 0.31
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (86 bp):
TTTTTTTGTCACTTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCATAAAACTTTTAA
AAAAAGCAATTAAGCCCCTAT
Found at i:7659383 original size:85 final size:88
Alignment explanation
Indices: 7659232--7659400 Score: 231
Period size: 85 Copynumber: 2.0 Consensus size: 88
7659222 CTAAAAATCT
* * *
7659232 TTTTAGAAAAAGCAATTAAGCCCCTTCTTTTTTATTTCACTTAATTGAGTATTTAAACTTTCAAA
1 TTTTAAAAAAAGCAATTAAGCCCCTTCTTTTTTATGTCACTCAATTGAGTATTTAAACTTTCAAA
*
7659297 ATACATCAAAAG-ACCATTAAAC
66 ATACATAAAAAGTACCATTAAAC
* *
7659319 TTTTAAAAAAAGCAATTAAGCTCCTAT-TTTTTT-TGT-ACTCAATTGAGTATTTGAACTGTT-A
1 TTTTAAAAAAAGCAATTAAGCCCCT-TCTTTTTTATGTCACTCAATTGAGTATTTAAACT-TTCA
7659380 AAATACATAAAAAGTACCATT
64 AAATACATAAAAAGTACCATT
7659401 TGACCATTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
85 33 0.45
86 10 0.14
87 29 0.40
88 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (88 bp):
TTTTAAAAAAAGCAATTAAGCCCCTTCTTTTTTATGTCACTCAATTGAGTATTTAAACTTTCAAA
ATACATAAAAAGTACCATTAAAC
Found at i:7659565 original size:27 final size:26
Alignment explanation
Indices: 7659499--7659567 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 26
7659489 CATGCGATAA
* *
7659499 AAAAATTATAAAAAATAAAAATTATT
1 AAAAATTAAAAAAAATAAAAAATATT
**
7659525 AAATTTTAATAAAAAATAAAAAATATT
1 AAAAATTAA-AAAAAATAAAAAATATT
7659552 AAAAATTAGAAAAAAA
1 AAAAATTA-AAAAAAA
7659568 ATTATAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
26 6 0.17
27 28 0.80
28 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (26 bp):
AAAAATTAAAAAAAATAAAAAATATT
Found at i:7659771 original size:19 final size:19
Alignment explanation
Indices: 7659747--7659803 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
7659737 CTTTGATACG
*
7659747 ATAACTTTTATATTTTTTT
1 ATAACTTTTATATTTCTTT
7659766 ATAACTTTTATATTTCTTT
1 ATAACTTTTATATTTCTTT
**
7659785 ATATTTTTTATAATTTCTT
1 ATAACTTTTAT-ATTTCTT
7659804 GACTTATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 27 0.79
20 7 0.21
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (19 bp):
ATAACTTTTATATTTCTTT
Found at i:7659843 original size:19 final size:18
Alignment explanation
Indices: 7659808--7659890 Score: 53
Period size: 19 Copynumber: 4.5 Consensus size: 18
7659798 TTTCTTGACT
* *
7659808 TATAATTTTTTATATTTC
1 TATAATTTTATAAATTTC
7659826 TATATATTTTATAAATTT-
1 TATA-ATTTTATAAATTTC
*
7659844 TCATGATTTTATAAAATTT-
1 T-ATAATTTTAT-AAATTTC
* * * *
7659863 TACAAATTTTTTTAATTTT
1 TA-TAATTTTATAAATTTC
7659882 TATAATTTT
1 TATAATTTT
7659891 TGTTTCTAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
18 24 0.46
19 28 0.54
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (18 bp):
TATAATTTTATAAATTTC
Found at i:7659879 original size:9 final size:9
Alignment explanation
Indices: 7659807--7659891 Score: 50
Period size: 9 Copynumber: 9.2 Consensus size: 9
7659797 ATTTCTTGAC
7659807 TTATAATTT
1 TTATAATTT
7659816 TT-TATATTT
1 TTATA-ATTT
*
7659825 CTAT-ATATT
1 TTATAAT-TT
7659834 TTATAAATTT
1 TTAT-AATTT
* *
7659844 TCATGA-TT
1 TTATAATTT
*
7659852 TTATAAAATT
1 TTAT-AATTT
*
7659862 TTACAAATTT
1 TTA-TAATTT
*
7659872 TTTTAATTT
1 TTATAATTT
7659881 TTATAATTT
1 TTATAATTT
7659890 TT
1 TT
7659892 GTTTCTAATT
Statistics
Matches: 57, Mismatches: 11, Indels: 16
0.68 0.13 0.19
Matches are distributed among these distances:
8 9 0.16
9 29 0.51
10 17 0.30
11 2 0.04
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (9 bp):
TTATAATTT
Found at i:7659891 original size:10 final size:10
Alignment explanation
Indices: 7659752--7659891 Score: 64
Period size: 10 Copynumber: 14.3 Consensus size: 10
7659742 ATACGATAAC
*
7659752 TTTTATATTT
1 TTTTATAATT
*
7659762 TTTTATAA-C
1 TTTTATAATT
7659771 TTTTAT-ATT
1 TTTTATAATT
7659780 TCTTTAT-ATT
1 T-TTTATAATT
7659790 TTTTATAATTT
1 TTTTATAA-TT
7659801 CTTGACTTATAATT
1 -TT---TTATAATT
7659815 TTTTAT-A-T
1 TTTTATAATT
* *
7659823 TTCTAT-ATA
1 TTTTATAATT
*
7659832 TTTTATAAAT
1 TTTTATAATT
* *
7659842 TTTCATGATT
1 TTTTATAATT
* *
7659852 TTATAAAATT
1 TTTTATAATT
**
7659862 TTACA-AATT
1 TTTTATAATT
7659871 TTTT-TAA-T
1 TTTTATAATT
7659879 TTTTATAATT
1 TTTTATAATT
7659889 TTT
1 TTT
7659892 GTTTCTAATT
Statistics
Matches: 99, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
8 13 0.13
9 29 0.29
10 43 0.43
11 2 0.02
12 2 0.02
13 2 0.02
14 2 0.02
15 6 0.06
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:7659929 original size:8 final size:8
Alignment explanation
Indices: 7659918--7659973 Score: 53
Period size: 8 Copynumber: 6.6 Consensus size: 8
7659908 AAAATTTAAG
7659918 TATTTTTA
1 TATTTTTA
7659926 TATTTTTA
1 TATTTTTA
7659934 T-TTAAATTTAA
1 TATT---TTT-A
7659945 TAATTTTTA
1 T-ATTTTTA
7659954 TATTTTTA
1 TATTTTTA
7659962 TATTTTT-
1 TATTTTTA
7659969 TATTT
1 TATTT
7659974 ATACCATACT
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
7 7 0.17
8 23 0.55
9 2 0.05
10 6 0.14
11 2 0.05
13 2 0.05
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TATTTTTA
Found at i:7659940 original size:28 final size:28
Alignment explanation
Indices: 7659909--7659962 Score: 92
Period size: 28 Copynumber: 1.9 Consensus size: 28
7659899 ATTTATAATA
7659909 AAATTTAAGT-ATTTTTATATTTTTATTT
1 AAATTTAA-TAATTTTTATATTTTTATTT
7659937 AAATTTAATAATTTTTATATTTTTAT
1 AAATTTAATAATTTTTATATTTTTAT
7659963 ATTTTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 1 0.04
28 24 0.96
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (28 bp):
AAATTTAATAATTTTTATATTTTTATTT
Found at i:7669642 original size:18 final size:18
Alignment explanation
Indices: 7669621--7669658 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7669611 ATTCATCGCC
7669621 TAATATTGTTATTGCTCT
1 TAATATTGTTATTGCTCT
7669639 TAATATTGTTATTGCTCT
1 TAATATTGTTATTGCTCT
7669657 TA
1 TA
7669659 GTTAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.55
Consensus pattern (18 bp):
TAATATTGTTATTGCTCT
Found at i:7672379 original size:11 final size:11
Alignment explanation
Indices: 7672363--7672393 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7672353 ACATTTAAGT
7672363 TCTGAATATCA
1 TCTGAATATCA
7672374 TCTGAATATCA
1 TCTGAATATCA
*
7672385 TTTGAATAT
1 TCTGAATAT
7672394 TGCTCCAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (11 bp):
TCTGAATATCA
Found at i:7673816 original size:19 final size:19
Alignment explanation
Indices: 7673780--7673817 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7673770 ATTTTTATAA
*
7673780 GGTGTTTTTGTTTTTTGTT
1 GGTGTTTTTGTTTGTTGTT
7673799 GGTGTTTTATG-TTGTTGTT
1 GGTGTTTT-TGTTTGTTGTT
7673818 TTGATGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.03, C:0.00, G:0.29, T:0.68
Consensus pattern (19 bp):
GGTGTTTTTGTTTGTTGTT
Found at i:7675029 original size:28 final size:28
Alignment explanation
Indices: 7674991--7675049 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
7674981 GCCAAAGCCT
7674991 TTTATGTTCTTTTAGATATGTAATGTCC
1 TTTATGTTCTTTTAGATATGTAATGTCC
7675019 TTTATGTTCTTTTAGATATGTAATGTCC
1 TTTATGTTCTTTTAGATATGTAATGTCC
7675047 TTT
1 TTT
7675050 CTCTTGTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.56
Consensus pattern (28 bp):
TTTATGTTCTTTTAGATATGTAATGTCC
Found at i:7679215 original size:19 final size:19
Alignment explanation
Indices: 7679192--7679229 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7679182 AATATAAATA
7679192 AAAAATAAAAATAATAACAT
1 AAAAA-AAAAATAATAACAT
*
7679212 AAAAAAAAAATATTAACA
1 AAAAAAAAAATAATAACA
7679230 GTCAATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAAAAAAAATAATAACAT
Found at i:7691858 original size:85 final size:84
Alignment explanation
Indices: 7691768--7691993 Score: 213
Period size: 87 Copynumber: 2.6 Consensus size: 84
7691758 AATAATTAAG
* * * * * *
7691768 TTTTTTTGTCATTTAATTGGGTACATAAAATTTTAAAATATATAAAAATACCCTAAAATCTTTTT
1 TTTTTTTGTCACTTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCATAAAA-C-TTTT
*
7691833 AGAAAAAGCAATTAAGCCCCT
64 AAAAAAAGCAATTAAGCCCCT
* ** * * *
7691854 TTTTTTATTTCACTTAATTGAGTATTTAAACTTTCAAAATACATCAAAAGACCATTAAACTTTTA
1 TTTTTT-TGTCACTTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCATAAAACTTTTA
*
7691919 AAAAAAGCAATTAAGCTCCT
65 AAAAAAGCAATTAAGCCCCT
* ** * *
7691939 ATTTTTTTGT-ACTCAATTGAGTATTTGAACTGTT-AAAATACATAAAAAGTACCAT
1 -TTTTTTTGTCACTTAATTGAGTACATAAAAT-TTCAAAATACATAAAAAG-ACCAT
7691994 TTGACCATTA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
84 33 0.28
85 32 0.27
86 13 0.11
87 40 0.34
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.38
Consensus pattern (84 bp):
TTTTTTTGTCACTTAATTGAGTACATAAAATTTCAAAATACATAAAAAGACCATAAAACTTTTAA
AAAAAGCAATTAAGCCCCT
Found at i:7691994 original size:85 final size:87
Alignment explanation
Indices: 7691799--7691994 Score: 242
Period size: 84 Copynumber: 2.3 Consensus size: 87
7691789 TACATAAAAT
* * * * *
7691799 TTTAAAATATATAAAAA-TACCCTAAAATCTTTTTAGAAAAAGCAATTAAGCCCCTTTTTTTATT
1 TTTAAAATACATAAAAAGTACCATTAAATCTTTTTAAAAAAAGCAATTAAGCCCCTTTTTTTATG
*
7691863 TCACTTAATTGAGTATTTAAAC
66 TCACTCAATTGAGTATTTAAAC
* *
7691885 TTTCAAAATACATCAAAAG-ACCATTAAA-C-TTTTAAAAAAAGCAATTAAGCTCCTATTTTTT-
1 TTT-AAAATACATAAAAAGTACCATTAAATCTTTTTAAAAAAAGCAATTAAGCCCCT-TTTTTTA
*
7691946 TGT-ACTCAATTGAGTATTTGAAC
64 TGTCACTCAATTGAGTATTTAAAC
7691969 TGTTAAAATACATAAAAAGTACCATT
1 T-TTAAAATACATAAAAAGTACCATT
7691995 TGACCATTAA
Statistics
Matches: 95, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
84 33 0.35
85 33 0.35
86 10 0.11
87 19 0.20
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (87 bp):
TTTAAAATACATAAAAAGTACCATTAAATCTTTTTAAAAAAAGCAATTAAGCCCCTTTTTTTATG
TCACTCAATTGAGTATTTAAAC
Found at i:7692141 original size:23 final size:23
Alignment explanation
Indices: 7692095--7692142 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
7692085 TGCGATAAAA
*
7692095 AATTATAAAAAATAAAAATTATT
1 AATTATAAAAAATAAAAATAATT
*
7692118 AATTTTAATAAAATAAAAA-AATT
1 AATTATAA-AAAATAAAAATAATT
7692141 AA
1 AA
7692143 AAATTAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATTATAAAAAATAAAAATAATT
Found at i:7692356 original size:15 final size:16
Alignment explanation
Indices: 7692333--7692371 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
7692323 CTTTGATACG
*
7692333 ATAACTTTATATTT-T
1 ATAATTTTATATTTCT
7692348 ATAATTTTATATTTCT
1 ATAATTTTATATTTCT
*
7692364 TTAATTTT
1 ATAATTTT
7692372 TTATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTTATATTTCT
Found at i:7692453 original size:18 final size:17
Alignment explanation
Indices: 7692394--7692454 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 17
7692384 TATGACATTA
*
7692394 TAAAATTTT-TATATTT
1 TAAAATTTTATAAATTT
*
7692410 CTATAATTTTATAAATTT
1 -TAAAATTTTATAAATTT
**
7692428 TACGATTTTATAAAATTT
1 TAAAATTTTAT-AAATTT
7692446 TAAAATTTT
1 TAAAATTTT
7692455 TTACGATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
17 17 0.47
18 19 0.53
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (17 bp):
TAAAATTTTATAAATTT
Found at i:7692535 original size:26 final size:28
Alignment explanation
Indices: 7692482--7692535 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
7692472 TTGTTTCTAA
*
7692482 TTATAATAATTTAAGTATTTATATTTTT
1 TTATAATAATATAAGTATTTATATTTTT
*
7692510 TTATAATAATATGA-TA-TTATATTTTT
1 TTATAATAATATAAGTATTTATATTTTT
7692536 ATTTTAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.42
27 2 0.08
28 12 0.50
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (28 bp):
TTATAATAATATAAGTATTTATATTTTT
Found at i:7702308 original size:18 final size:18
Alignment explanation
Indices: 7702287--7702324 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7702277 ATTCATCGCC
7702287 TAATATTGTTATTGCTCT
1 TAATATTGTTATTGCTCT
7702305 TAATATTGTTATTGCTCT
1 TAATATTGTTATTGCTCT
7702323 TA
1 TA
7702325 GTTAATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.55
Consensus pattern (18 bp):
TAATATTGTTATTGCTCT
Found at i:7705014 original size:11 final size:11
Alignment explanation
Indices: 7704998--7705028 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7704988 ACATTTAAGT
7704998 TCTGAATATCA
1 TCTGAATATCA
7705009 TCTGAATATCA
1 TCTGAATATCA
*
7705020 TTTGAATAT
1 TCTGAATAT
7705029 TGCTCCAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (11 bp):
TCTGAATATCA
Found at i:7706443 original size:19 final size:18
Alignment explanation
Indices: 7706413--7706449 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
7706403 TTTTTATAAG
*
7706413 GGTGTTTTTGTTTTTGTT
1 GGTGTTTTTGTTGTTGTT
7706431 GGTGTTTTATGTTGTTGTT
1 GGTGTTTT-TGTTGTTGTT
7706450 TTGATGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.03, C:0.00, G:0.30, T:0.68
Consensus pattern (18 bp):
GGTGTTTTTGTTGTTGTT
Found at i:7707672 original size:28 final size:28
Alignment explanation
Indices: 7707634--7707692 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
7707624 TGCAAAGCCT
7707634 TTTATGTTCTTTTAGATATGTAATGTCC
1 TTTATGTTCTTTTAGATATGTAATGTCC
7707662 TTTATGTTCTTTTAGATATGTAATGTCC
1 TTTATGTTCTTTTAGATATGTAATGTCC
7707690 TTT
1 TTT
7707693 CTCTTGTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.56
Consensus pattern (28 bp):
TTTATGTTCTTTTAGATATGTAATGTCC
Found at i:7711552 original size:15 final size:15
Alignment explanation
Indices: 7711532--7711562 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
7711522 TTTTATAATT
7711532 AAAAAAAT-ATTTTA
1 AAAAAAATCATTTTA
7711546 AAAAAAATCATTTTA
1 AAAAAAATCATTTTA
7711561 AA
1 AA
7711563 TAACTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (15 bp):
AAAAAAATCATTTTA
Found at i:7717542 original size:19 final size:19
Alignment explanation
Indices: 7717518--7717556 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7717508 CCCAATCTGA
7717518 ATGGTTCCTCCAAAACGAT
1 ATGGTTCCTCCAAAACGAT
7717537 ATGGTTCCTCCAAAACGAT
1 ATGGTTCCTCCAAAACGAT
7717556 A
1 A
7717557 GTTAGCTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (19 bp):
ATGGTTCCTCCAAAACGAT
Found at i:7718357 original size:19 final size:19
Alignment explanation
Indices: 7718335--7718373 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7718325 TGCAAATGAC
*
7718335 ATTAAAAAACACCAACTCG
1 ATTAAAAAACACCAAATCG
7718354 ATTAAAAAACACCAAATCG
1 ATTAAAAAACACCAAATCG
7718373 A
1 A
7718374 GTCACACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.56, C:0.23, G:0.05, T:0.15
Consensus pattern (19 bp):
ATTAAAAAACACCAAATCG
Found at i:7727645 original size:17 final size:17
Alignment explanation
Indices: 7727609--7727646 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7727599 TAAGAAGATA
*
7727609 TTTAAATTTCTAAATTT
1 TTTAAATTTCTAAATAT
7727626 TTTAAATTT-TATAATAT
1 TTTAAATTTCTA-AATAT
7727643 TTTA
1 TTTA
7727647 TTTTGACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTAAATTTCTAAATAT
Found at i:7727915 original size:20 final size:19
Alignment explanation
Indices: 7727882--7727938 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
7727872 ATCAAAAGTG
7727882 TTTTTTAATATTTAATATTTAA
1 TTTTTT-AT-TTTAA-ATTTAA
*
7727904 TTTTTTATTTTAAATTTAG
1 TTTTTTATTTTAAATTTAA
7727923 TATTTTTATTTTAAAT
1 T-TTTTTATTTTAAAT
7727939 AAACTTAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 6 0.18
20 19 0.58
21 2 0.06
22 6 0.18
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTTATTTTAAATTTAA
Found at i:7740523 original size:47 final size:48
Alignment explanation
Indices: 7740420--7740544 Score: 148
Period size: 47 Copynumber: 2.6 Consensus size: 48
7740410 TTTACATAAT
* * * * *
7740420 GATGCCATAGCCTAGCTATGGTCTTACAC-GTAATCACATATCTCACT
1 GATGCCATATCCTAGATATGGTCTTATACAGTAAGCACATATCTCACC
* *
7740467 GATGTCATATCCTAGATATGGTCTTATACAGT-AGCATATAT-TACACC
1 GATGCCATATCCTAGATATGGTCTTATACAGTAAGCACATATCT-CACC
*
7740514 GATGCCATATCCCAGATATGGTCTTATACAG
1 GATGCCATATCCTAGATATGGTCTTATACAG
7740545 AAATCACTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 1 0.01
47 64 0.96
48 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (48 bp):
GATGCCATATCCTAGATATGGTCTTATACAGTAAGCACATATCTCACC
Found at i:7741957 original size:46 final size:46
Alignment explanation
Indices: 7741907--7742082 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
7741897 TGGTTGAGCA
*
7741907 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7741953 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* **
7741998 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7742046 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7742083 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 28 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7742016 original size:93 final size:93
Alignment explanation
Indices: 7741904--7742075 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
7741894 GGATGGTTGA
* * ***
7741904 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
7741969 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
7741997 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
7742062 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
7742076 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7749468 original size:46 final size:46
Alignment explanation
Indices: 7749418--7749546 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
7749408 TGGTTGAGCA
*
7749418 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
7749464 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
7749510 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7749547 GAGGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:7752936 original size:23 final size:22
Alignment explanation
Indices: 7752898--7752958 Score: 90
Period size: 21 Copynumber: 2.8 Consensus size: 22
7752888 GACACATAAA
*
7752898 GTGCCT-AAAACGACACACGAG
1 GTGCCTGAATACGACACACGAG
7752919 GTGCCTG-ATACGACACACGAG
1 GTGCCTGAATACGACACACGAG
7752940 GTGCCTGAAATACGACACA
1 GTGCCTG-AATACGACACA
7752959 TAAAGTGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 26 0.72
23 10 0.28
ACGTcount: A:0.34, C:0.28, G:0.25, T:0.13
Consensus pattern (22 bp):
GTGCCTGAATACGACACACGAG
Found at i:7752966 original size:23 final size:23
Alignment explanation
Indices: 7752887--7752970 Score: 86
Period size: 21 Copynumber: 3.8 Consensus size: 23
7752877 GATCAGTATC
*
7752887 CGACACATAAAGTGCCT-AAA-A
1 CGACACACAAAGTGCCTGAAATA
* *
7752908 CGACACACGAGGTGCCTG--ATA
1 CGACACACAAAGTGCCTGAAATA
* *
7752929 CGACACACGAGGTGCCTGAAATA
1 CGACACACAAAGTGCCTGAAATA
*
7752952 CGACACATAAAGTGCCTGA
1 CGACACACAAAGTGCCTGA
7752971 TCGATAAAGC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.02
21 33 0.62
23 19 0.36
ACGTcount: A:0.37, C:0.26, G:0.23, T:0.14
Consensus pattern (23 bp):
CGACACACAAAGTGCCTGAAATA
Found at i:7753378 original size:15 final size:15
Alignment explanation
Indices: 7753345--7753395 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
7753335 TATATTATAT
7753345 AATTCAATC--AATA
1 AATTCAATCAAAATA
7753358 AATTCAATCAAAATA
1 AATTCAATCAAAATA
* *
7753373 ATTTCAATCAATATA
1 AATTCAATCAAAATA
7753388 AATTCAAT
1 AATTCAAT
7753396 AAATTCATCG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
13 9 0.27
15 24 0.73
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (15 bp):
AATTCAATCAAAATA
Found at i:7754657 original size:5 final size:5
Alignment explanation
Indices: 7754644--7754680 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
7754634 TTCTTTAGTT
7754644 TATATA TATAA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA T
7754681 TAAAACATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:7754716 original size:8 final size:8
Alignment explanation
Indices: 7754703--7754731 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7754693 TATCTTTATT
7754703 ATATAATA
1 ATATAATA
7754711 ATATAATA
1 ATATAATA
7754719 ATATAATA
1 ATATAATA
7754727 ATATA
1 ATATA
7754732 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:7756573 original size:18 final size:17
Alignment explanation
Indices: 7756546--7756582 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
7756536 TTTCTTCCAT
*
7756546 TTATTAATATATTATAA
1 TTATTAATATAATATAA
7756563 TTATATAATATAATATAA
1 TTAT-TAATATAATATAA
7756581 TT
1 TT
7756583 TACTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATTAATATAATATAA
Found at i:7765255 original size:31 final size:29
Alignment explanation
Indices: 7765197--7765258 Score: 79
Period size: 31 Copynumber: 2.1 Consensus size: 29
7765187 GTTTCATATG
* *
7765197 TATAATTGCATCAAATTAAAGTTTATGTA
1 TATAATTGCATCAAATCAAAATTTATGTA
*
7765226 TATAATTACGCATTAAATCAAAATTTATGTA
1 TATAATT--GCATCAAATCAAAATTTATGTA
7765257 TA
1 TA
7765259 CCTTTGAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 7 0.25
31 21 0.75
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (29 bp):
TATAATTGCATCAAATCAAAATTTATGTA
Found at i:7765279 original size:15 final size:15
Alignment explanation
Indices: 7765259--7765293 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
7765249 TTTATGTATA
7765259 CCTTTGAAATTTATC
1 CCTTTGAAATTTATC
*
7765274 CCTTTGAGATTTATC
1 CCTTTGAAATTTATC
7765289 CCTTT
1 CCTTT
7765294 TAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.09, T:0.49
Consensus pattern (15 bp):
CCTTTGAAATTTATC
Found at i:7781386 original size:20 final size:20
Alignment explanation
Indices: 7781353--7781390 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7781343 ACTAGTTTTA
7781353 AGTAAAAATATAATAAAAGT
1 AGTAAAAATATAATAAAAGT
7781373 AGTAGAAAAT-TAATAAAA
1 AGTA-AAAATATAATAAAA
7781391 TCCCAGACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.24
Consensus pattern (20 bp):
AGTAAAAATATAATAAAAGT
Found at i:7791650 original size:46 final size:44
Alignment explanation
Indices: 7791591--7791705 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
7791581 ACAGGACAGA
* *
7791591 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* * *
7791637 ACGGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
7791681 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
7791706 GTCAAAGACA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 34 0.58
46 25 0.42
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7791697 original size:44 final size:45
Alignment explanation
Indices: 7791591--7791724 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 45
7791581 ACAGGACAGA
* * *
7791591 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* * * *
7791637 ACGGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
** * * *
7791681 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7791725 CAGGATATTG
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
44 35 0.49
45 1 0.01
46 36 0.50
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7793256 original size:42 final size:42
Alignment explanation
Indices: 7793197--7793282 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
7793187 ATTAGGGTTG
* *
7793197 TGTGATTTTGTGTAAGACCATATCAGGGATATGGCATCGATA
1 TGTGATTTTGTGTAAGACCATATCAGGGACATGGAATCGATA
* *
7793239 TGTGATTTTGTGTAAGACCATGTCTGGGACATGGAATCGATA
1 TGTGATTTTGTGTAAGACCATATCAGGGACATGGAATCGATA
7793281 TG
1 TG
7793283 AGACATCGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.34
Consensus pattern (42 bp):
TGTGATTTTGTGTAAGACCATATCAGGGACATGGAATCGATA
Found at i:7797124 original size:205 final size:205
Alignment explanation
Indices: 7796772--7797182 Score: 813
Period size: 205 Copynumber: 2.0 Consensus size: 205
7796762 TTCGAGCCCC
*
7796772 GAACAATCAATTCAGGACTCATCATAAGCTCAATTGTTCTCTAACCTAGATATTCGACTAGGTAA
1 GAACAATCAATTCAGGACTCATCATAAGCTCAATCGTTCTCTAACCTAGATATTCGACTAGGTAA
7796837 AATACTAGGGAATTCTTGAAATGGCCCCACATCTTCCACCCAGCCAACATCGCAACAACTCCAAC
66 AATACTAGGGAATTCTTGAAATGGCCCCACATCTTCCACCCAGCCAACATCGCAACAACTCCAAC
7796902 CTTCATTGCAAATACCATAATGCTTAAATGAATCAAATTGAGCAATGTGTACATTTAAAGAATGC
131 CTTCATTGCAAATACCATAATGCTTAAATGAATCAAATTGAGCAATGTGTACATTTAAAGAATGC
7796967 TATTGTAACT
196 TATTGTAACT
7796977 GAACAATCAATTCAGGACTCATCATAAGCTCAATCGTTCTCTAACCTAGATATTCGACTAGGTAA
1 GAACAATCAATTCAGGACTCATCATAAGCTCAATCGTTCTCTAACCTAGATATTCGACTAGGTAA
7797042 AATACTAGGGAATTCTTGAAATGGCCCCACATCTTCCACCCAGCCAACATCGCAACAACTCCAAC
66 AATACTAGGGAATTCTTGAAATGGCCCCACATCTTCCACCCAGCCAACATCGCAACAACTCCAAC
7797107 CTTCATTGCAAATACCATAATGCTTAAATGAATCAAATTGAGCAATGTGTACATTTAAAGAATGC
131 CTTCATTGCAAATACCATAATGCTTAAATGAATCAAATTGAGCAATGTGTACATTTAAAGAATGC
7797172 TATTGTAACT
196 TATTGTAACT
7797182 G
1 G
7797183 CAACTCGAAA
Statistics
Matches: 205, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
205 205 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (205 bp):
GAACAATCAATTCAGGACTCATCATAAGCTCAATCGTTCTCTAACCTAGATATTCGACTAGGTAA
AATACTAGGGAATTCTTGAAATGGCCCCACATCTTCCACCCAGCCAACATCGCAACAACTCCAAC
CTTCATTGCAAATACCATAATGCTTAAATGAATCAAATTGAGCAATGTGTACATTTAAAGAATGC
TATTGTAACT
Found at i:7799783 original size:21 final size:21
Alignment explanation
Indices: 7799758--7799822 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 21
7799748 TAGCCTCCGG
7799758 GCTTCCATTTAGCACTTATGT
1 GCTTCCATTTAGCACTTATGT
* * *
7799779 GCTT-CAGTTAGC-CTT-CGG
1 GCTTCCATTTAGCACTTATGT
*
7799797 GCTTCCGTTTAGCACTTATGT
1 GCTTCCATTTAGCACTTATGT
7799818 GCTTC
1 GCTTC
7799823 AGCTAGATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 5 0.15
19 9 0.26
20 10 0.29
21 10 0.29
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.40
Consensus pattern (21 bp):
GCTTCCATTTAGCACTTATGT
Found at i:7799786 original size:39 final size:39
Alignment explanation
Indices: 7799740--7799824 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
7799730 GCTCTGATGA
7799740 GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
* *
7799779 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
7799818 GCTTCAG
1 GCTTCAG
7799825 CTAGATTTCG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.14, C:0.27, G:0.22, T:0.36
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
Found at i:7799835 original size:39 final size:39
Alignment explanation
Indices: 7799740--7799840 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
7799730 GCTCTGATGA
* * *
7799740 GCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGCTAGACTTCGGGCTTCCATTTAGCACTTATGT
* * *
7799779 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGCTAGACTTCGGGCTTCCATTTAGCACTTATGT
*
7799818 GCTTCAGCTAGATTTCGGGCTTC
1 GCTTCAGCTAGACTTCGGGCTTC
7799841 AGATCACGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.14, C:0.27, G:0.23, T:0.37
Consensus pattern (39 bp):
GCTTCAGCTAGACTTCGGGCTTCCATTTAGCACTTATGT
Found at i:7800745 original size:46 final size:47
Alignment explanation
Indices: 7800682--7800955 Score: 369
Period size: 46 Copynumber: 5.9 Consensus size: 47
7800672 TTCGACATGA
* * * * *
7800682 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* ** * **
7800728 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
7800775 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* * *
7800821 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* *
7800867 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
7800913 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCA
7800956 GATAGCACAC
Statistics
Matches: 207, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
46 167 0.81
47 40 0.19
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
Found at i:7803113 original size:11 final size:11
Alignment explanation
Indices: 7803097--7803148 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
7803087 TATACTAAAT
7803097 AAATAATAATA
1 AAATAATAATA
*
7803108 AAATAAT-ATT
1 AAATAATAATA
* *
7803118 AAATATCTCATA
1 AAATA-ATAATA
*
7803130 AAATATTAATA
1 AAATAATAATA
7803141 AAATAATA
1 AAATAATA
7803149 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:7813850 original size:5 final size:5
Alignment explanation
Indices: 7813840--7813875 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
7813830 GGGGGGTTAG
* *
7813840 CAGCA CAGCA CAGCA CAGCA CAGCA CTGCA CTGCA C
1 CAGCA CAGCA CAGCA CAGCA CAGCA CAGCA CAGCA C
7813876 CCAGCCAGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.33, C:0.42, G:0.19, T:0.06
Consensus pattern (5 bp):
CAGCA
Found at i:7820269 original size:19 final size:19
Alignment explanation
Indices: 7820245--7820295 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
7820235 TTCCTTTTAT
7820245 CAGAAATATTTT-TTAGTTG
1 CAGAAATATTTTGTT-GTTG
7820264 CAGAAAATATTTTGGTTGTTG
1 CAG-AAATATTTT-GTTGTTG
7820285 CAG-AATATTTT
1 CAGAAATATTTT
7820296 AAGTTGAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 11 0.38
20 9 0.31
21 7 0.24
22 2 0.07
ACGTcount: A:0.31, C:0.06, G:0.18, T:0.45
Consensus pattern (19 bp):
CAGAAATATTTTGTTGTTG
Found at i:7820286 original size:21 final size:20
Alignment explanation
Indices: 7820248--7820289 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
7820238 CTTTTATCAG
7820248 AAATATTTTTTAGTTGCAGA
1 AAATATTTTTTAGTTGCAGA
7820268 AAATATTTTGGTT-GTTGCAGA
1 AAATATTTT--TTAGTTGCAGA
7820289 A
1 A
7820290 TATTTTAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.45
21 9 0.45
22 2 0.10
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (20 bp):
AAATATTTTTTAGTTGCAGA
Found at i:7822285 original size:18 final size:19
Alignment explanation
Indices: 7822264--7822302 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7822254 ATTTTAGGGT
*
7822264 TTTTATAAA-TATTTAGAA
1 TTTTAAAAATTATTTAGAA
*
7822282 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTTAGAA
7822301 TT
1 TT
7822303 ATTTTATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTTAAAAATTATTTAGAA
Found at i:7825435 original size:40 final size:39
Alignment explanation
Indices: 7825356--7825435 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 39
7825346 TGATATGCTT
* * *
7825356 TCATAATCTGTATAGAGAATTTGCACTTGAATTTCAGAC
1 TCATAATCTGTATAGAGAAATTGCAATTGAACTTCAGAC
* *
7825395 TCATAATGTGTATGGAGAAAATTGCAATTGAAGCTT-AGAC
1 TCATAATCTGTATAGAG-AAATTGCAATTGAA-CTTCAGAC
7825435 T
1 T
7825436 GTTTATGGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
39 15 0.44
40 17 0.50
41 2 0.06
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (39 bp):
TCATAATCTGTATAGAGAAATTGCAATTGAACTTCAGAC
Found at i:7829269 original size:18 final size:18
Alignment explanation
Indices: 7829246--7829285 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7829236 ATATAAGTTA
** *
7829246 AAAATTTTGTTAAATTTG
1 AAAATTTTAATAAATCTG
7829264 AAAATTTTAATAAATCTG
1 AAAATTTTAATAAATCTG
7829282 AAAA
1 AAAA
7829286 AAAATTATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (18 bp):
AAAATTTTAATAAATCTG
Found at i:7830302 original size:17 final size:17
Alignment explanation
Indices: 7830282--7830315 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7830272 AGGTTTAGGT
7830282 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
7830299 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
7830316 AAATTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:7830611 original size:6 final size:6
Alignment explanation
Indices: 7830600--7830627 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7830590 CTTCTCCCAT
7830600 TTCCCC TTCCCC TTCCCC TTCCCC TTCC
1 TTCCCC TTCCCC TTCCCC TTCCCC TTCC
7830628 GGTTGTTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (6 bp):
TTCCCC
Found at i:7830712 original size:25 final size:26
Alignment explanation
Indices: 7830684--7830737 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
7830674 AGGCTCATTC
*
7830684 TCCTTCTTCCGTTCTTCAT-TTCTTT
1 TCCTTCTTCCGTTCTTCATCTTCTCT
7830709 TCCTTCTTCCGTTCTTCATCTTCTCT
1 TCCTTCTTCCGTTCTTCATCTTCTCT
7830735 TCC
1 TCC
7830738 AGGTAAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.04, C:0.37, G:0.04, T:0.56
Consensus pattern (26 bp):
TCCTTCTTCCGTTCTTCATCTTCTCT
Found at i:7833987 original size:55 final size:55
Alignment explanation
Indices: 7833903--7834008 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
7833893 AATCTTAGGT
*
7833903 CCAACTTAAAATATGACTTAGATATAGTATCCTTAAAAGGCTGGCAAGCTTTAAA
1 CCAACTTAAAATATGACTTAGATATAGTATCCTTAAAAGGCTGACAAGCTTTAAA
** * *
7833958 CCAACTTAAAATATGGGTTAGATGTAGTATTCTTAAAAGGCTGACAAGCTT
1 CCAACTTAAAATATGACTTAGATATAGTATCCTTAAAAGGCTGACAAGCTT
7834009 AAAAAGTTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (55 bp):
CCAACTTAAAATATGACTTAGATATAGTATCCTTAAAAGGCTGACAAGCTTTAAA
Found at i:7838838 original size:6 final size:7
Alignment explanation
Indices: 7838821--7838845 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7838811 CCCAGAATAA
7838821 AAAAAAG
1 AAAAAAG
7838828 AAAAAAG
1 AAAAAAG
7838835 AAAAAAG
1 AAAAAAG
7838842 AAAA
1 AAAA
7838846 GTGAACGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:7848010 original size:14 final size:14
Alignment explanation
Indices: 7847993--7848027 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7847983 TTATTATTTC
**
7847993 TTAATTAATTTAAA
1 TTAATTAATAAAAA
7848007 TTAATTAATAAAAA
1 TTAATTAATAAAAA
7848021 TTAATTA
1 TTAATTA
7848028 TGACACAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TTAATTAATAAAAA
Found at i:7860152 original size:3 final size:3
Alignment explanation
Indices: 7860146--7860170 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7860136 AGTAGTAATA
7860146 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
7860171 TCCCAGTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7871418 original size:30 final size:31
Alignment explanation
Indices: 7871375--7871433 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7871365 ATAACGGTTC
**
7871375 AAAAGATCCAATTAATTATTATTTTTAAATT
1 AAAAGATCCAATTAATTACAATTTTTAAATT
*
7871406 AAAAG-TCTAATTAATTACAATTTTTAAA
1 AAAAGATCCAATTAATTACAATTTTTAAA
7871434 AAACCAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (31 bp):
AAAAGATCCAATTAATTACAATTTTTAAATT
Found at i:7872411 original size:18 final size:18
Alignment explanation
Indices: 7872361--7872411 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
7872351 ACCTAATCTG
7872361 AATTTAATTTAAATAATAA
1 AATTTAATTTAAAT-ATAA
* *
7872380 AATGTATTTTTAAAT-TAA
1 AATTTA-ATTTAAATATAA
7872398 AATTTAATTATAAA
1 AATTTAATT-TAAA
7872412 AAATGTATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 2 0.08
18 12 0.46
19 5 0.19
20 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
AATTTAATTTAAATATAA
Found at i:7878293 original size:105 final size:105
Alignment explanation
Indices: 7878152--7878361 Score: 321
Period size: 105 Copynumber: 2.0 Consensus size: 105
7878142 AGGAGTTCAT
* * * * *
7878152 GATTTTAAGGTTTGTTGTCAGCTACGATTCTGGTAGAAAGTTAGTTTCTTATACGGACACTTTAT
1 GATTATAAGGTTCGTTGTCAGCGACGATTCTAGTAGAAAGTTAGTCTCTTATACGGACACTTTAT
* *
7878217 TGAGAGCAATAGTTATTAAACATGACTCACAACTTTTAGA
66 TGAGAACAATAGTTAATAAACATGACTCACAACTTTTAGA
* * *
7878257 GATTATAAGGTTCGTTGTCAGCGACGATTCTAGTAGAAAGTTGGTCTCTTATAGGGACACTTTGT
1 GATTATAAGGTTCGTTGTCAGCGACGATTCTAGTAGAAAGTTAGTCTCTTATACGGACACTTTAT
*
7878322 TGAGAATAATAGTTAATAAACATGACTCACAACTTTTAGA
66 TGAGAACAATAGTTAATAAACATGACTCACAACTTTTAGA
7878362 AGATAAAACG
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
105 94 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.35
Consensus pattern (105 bp):
GATTATAAGGTTCGTTGTCAGCGACGATTCTAGTAGAAAGTTAGTCTCTTATACGGACACTTTAT
TGAGAACAATAGTTAATAAACATGACTCACAACTTTTAGA
Found at i:7878391 original size:105 final size:105
Alignment explanation
Indices: 7878175--7878393 Score: 246
Period size: 105 Copynumber: 2.1 Consensus size: 105
7878165 GTTGTCAGCT
* * * *
7878175 ACGATTCTGGTAGAAAGTTAGTTTCTTATACGGACACTTTATTGAGAGCAATAGTTATTAAACAT
1 ACGATTCTAGTAGAAAGTTAGTCTCTTATACGGACACTTTATTGAGAACAATAGTTAATAAACAT
* *** ** *
7878240 GACTCACAACTTTTAGAGATTATAAGGTTCGTTGTCAGCG
66 GACTCACAACTTTTAGAGATTAAAAGAAACGTTGAAAACG
* * * *
7878280 ACGATTCTAGTAGAAAGTTGGTCTCTTATAGGGACACTTTGTTGAGAATAATAGTTAATAAACAT
1 ACGATTCTAGTAGAAAGTTAGTCTCTTATACGGACACTTTATTGAGAACAATAGTTAATAAACAT
*
7878345 GACTCACAACTTTTAGAAGA-TAAAACGAAACTTATGAAAAC-
66 GACTCACAACTTTTAG-AGATTAAAA-GAAACGT-TGAAAACG
7878386 A-GATTCTA
1 ACGATTCTA
7878394 AAGGGGATGA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
105 84 0.88
106 7 0.07
107 4 0.04
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (105 bp):
ACGATTCTAGTAGAAAGTTAGTCTCTTATACGGACACTTTATTGAGAACAATAGTTAATAAACAT
GACTCACAACTTTTAGAGATTAAAAGAAACGTTGAAAACG
Found at i:7880863 original size:46 final size:44
Alignment explanation
Indices: 7880759--7880866 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
7880749 TGTCTTTGAC
** * * *
7880759 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7880803 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7880849 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7880867 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7883736 original size:346 final size:346
Alignment explanation
Indices: 7883103--7883791 Score: 1218
Period size: 346 Copynumber: 2.0 Consensus size: 346
7883093 ACCCCGTCAG
7883103 ACTTCAGTATGGCGACAACCAAGCTTTGATGCCACGACATTCTCGATAGTAGCACAACATTAGGT
1 ACTTCAGTATGGCGACAACCAAGCTTTGATGCCACGACATTCTCGATAGTAGCACAACATTAGGT
* *
7883168 AGGGGGTTCTTGGTGTCACGACACCCTTATTAGTGGCCTTAGGTTCATTCACTTCAACCATCAGC
66 AGGGGGTTATCGGTGTCACGACACCCTTATTAGTGGCCTTAGGTTCATTCACTTCAACCATCAGC
*
7883233 TTGTAGTCGCAACCTTAAAGGCTTGAAGTCAAGACATTGGGGTTTAGAGCCACGACACAACACAC
131 TTGTAGTCACAACCTTAAAGGCTTGAAGTCAAGACATTGGGGTTTAGAGCCACGACACAACACAC
7883298 CTAATGTTGCGACATCTTTGGTAGACTGCTTCAGGTTGGTTTTTCATTAAAGTTTTACTCCTCTA
196 CTAATGTTGCGACATCTTTGGTAGACTGCTTCAGGTTGGTTTTTCATTAAAGTTTTACTCCTCTA
* *
7883363 AGGTGATGGAGGGTTAATATCGTGACACACATGCATCAGTGTTGCAATATCCAAAACAGTTGATG
261 AGGTGATGGAGGGTCAATATCGTGACACACATGCATCAGTGTCGCAATATCCAAAACAGTTGATG
7883428 CTTTCCTCAAGGTTTGGCCAT
326 CTTTCCTCAAGGTTTGGCCAT
* *
7883449 ACTTCAGTATGGCGACAACTAAGCTTTGATGTCACGACATTCTCGATAGTAGCACAACATT-GGT
1 ACTTCAGTATGGCGACAACCAAGCTTTGATGCCACGACATTCTCGATAGTAGCACAACATTAGG-
7883513 TAGGGGGTTATCGGTGTCACGACACCCTTATTAGTGGCCTTAGGTTCATTCACTTCAACCATCAG
65 TAGGGGGTTATCGGTGTCACGACACCCTTATTAGTGGCCTTAGGTTCATTCACTTCAACCATCAG
* *
7883578 CTTGTAGTCACAACCTTAAAGGCTTGAAGTCAAGACATTGGGGTTTAGTGTCACGACACAACACA
130 CTTGTAGTCACAACCTTAAAGGCTTGAAGTCAAGACATTGGGGTTTAGAGCCACGACACAACACA
* *
7883643 CCTAATGTTGCGACATCTTTGGTAGACTGCTTCAGGTTGGTTTTTCATTAAATTTTTGCTCCTCT
195 CCTAATGTTGCGACATCTTTGGTAGACTGCTTCAGGTTGGTTTTTCATTAAAGTTTTACTCCTCT
* * *
7883708 AAGGTGATGGAGGGTCAATGTCGTGACACACATGCATTAGTGTCGCAATATCCAAAGCAGTTGAT
260 AAGGTGATGGAGGGTCAATATCGTGACACACATGCATCAGTGTCGCAATATCCAAAACAGTTGAT
* *
7883773 GTTTTTCTCAAGGTTTGGC
325 GCTTTCCTCAAGGTTTGGC
7883792 TATATTTATT
Statistics
Matches: 326, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
345 2 0.01
346 324 0.99
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (346 bp):
ACTTCAGTATGGCGACAACCAAGCTTTGATGCCACGACATTCTCGATAGTAGCACAACATTAGGT
AGGGGGTTATCGGTGTCACGACACCCTTATTAGTGGCCTTAGGTTCATTCACTTCAACCATCAGC
TTGTAGTCACAACCTTAAAGGCTTGAAGTCAAGACATTGGGGTTTAGAGCCACGACACAACACAC
CTAATGTTGCGACATCTTTGGTAGACTGCTTCAGGTTGGTTTTTCATTAAAGTTTTACTCCTCTA
AGGTGATGGAGGGTCAATATCGTGACACACATGCATCAGTGTCGCAATATCCAAAACAGTTGATG
CTTTCCTCAAGGTTTGGCCAT
Found at i:7887738 original size:22 final size:21
Alignment explanation
Indices: 7887705--7887745 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7887695 AAATGAAATA
*
7887705 AAAGAAATGAAAAAGAGAAAC
1 AAAGAAACGAAAAAGAGAAAC
*
7887726 AAAGCAAACGAAACAGAGAA
1 AAAG-AAACGAAAAAGAGAA
7887746 GAACAGGGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.68, C:0.10, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAGAAACGAAAAAGAGAAAC
Found at i:7889848 original size:18 final size:17
Alignment explanation
Indices: 7889815--7889853 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7889805 TTGTATAAAT
7889815 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7889833 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7889850 TGTG
1 TGTG
7889854 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7890106 original size:23 final size:23
Alignment explanation
Indices: 7890079--7890176 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
7890069 AGTGTTATTG
7890079 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
7890102 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7890125 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7890147 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7890170 ATCAGTG
1 ATCAGTG
7890177 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7890145 original size:45 final size:45
Alignment explanation
Indices: 7890081--7890169 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
7890071 TGTTATTGAT
* *
7890081 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
7890126 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
7890170 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:7893988 original size:111 final size:111
Alignment explanation
Indices: 7893866--7894087 Score: 444
Period size: 111 Copynumber: 2.0 Consensus size: 111
7893856 ATCAATTTTA
7893866 AAAAAAAATTGATGGATTTATTTGTTTATCTATTATTTGATTGGAAATGTTTGTATGAGACTGAA
1 AAAAAAAATTGATGGATTTATTTGTTTATCTATTATTTGATTGGAAATGTTTGTATGAGACTGAA
7893931 AATAGTATTGGAGCGGGGTCGGGATGGATGTTATTAAATTCACTAC
66 AATAGTATTGGAGCGGGGTCGGGATGGATGTTATTAAATTCACTAC
7893977 AAAAAAAATTGATGGATTTATTTGTTTATCTATTATTTGATTGGAAATGTTTGTATGAGACTGAA
1 AAAAAAAATTGATGGATTTATTTGTTTATCTATTATTTGATTGGAAATGTTTGTATGAGACTGAA
7894042 AATAGTATTGGAGCGGGGTCGGGATGGATGTTATTAAATTCACTAC
66 AATAGTATTGGAGCGGGGTCGGGATGGATGTTATTAAATTCACTAC
7894088 CGTTTCATTG
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (111 bp):
AAAAAAAATTGATGGATTTATTTGTTTATCTATTATTTGATTGGAAATGTTTGTATGAGACTGAA
AATAGTATTGGAGCGGGGTCGGGATGGATGTTATTAAATTCACTAC
Found at i:7897453 original size:21 final size:21
Alignment explanation
Indices: 7897427--7897467 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7897417 ATCTGCTCAA
* *
7897427 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7897448 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7897468 TTGCTCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7901735 original size:24 final size:24
Alignment explanation
Indices: 7901708--7901759 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7901698 TTAGTAAGTC
*
7901708 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7901732 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7901756 AAAT
1 AAAT
7901760 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7903703 original size:24 final size:24
Alignment explanation
Indices: 7903676--7903727 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7903666 TTAGTAAGTC
*
7903676 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7903700 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7903724 AAAT
1 AAAT
7903728 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7910355 original size:16 final size:16
Alignment explanation
Indices: 7910334--7910377 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7910324 GATTCAACCT
7910334 TATAAAATTATAAAAA
1 TATAAAATTATAAAAA
*
7910350 TAT-AAATTATTAAAA
1 TATAAAATTATAAAAA
*
7910365 TAACAAAATTATA
1 T-ATAAAATTATA
7910378 TTTTTACTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 12 0.52
16 4 0.17
17 7 0.30
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (16 bp):
TATAAAATTATAAAAA
Found at i:7911321 original size:45 final size:42
Alignment explanation
Indices: 7911235--7911319 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
7911225 AATTAATCCG
* *
7911235 CAATCATCCTCTACTTATCAACAGCCTGCACAATATCCTCCT
1 CAATCATCATCTACTTATCAACAACCTGCACAATATCCTCCT
7911277 CAATCATCATCCT-CTTATCAACAACCTGCACAATATCCTCCT
1 CAATCATCAT-CTACTTATCAACAACCTGCACAATATCCTCCT
7911319 C
1 C
7911320 CTGAAAGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 38 0.95
43 2 0.05
ACGTcount: A:0.29, C:0.39, G:0.04, T:0.28
Consensus pattern (42 bp):
CAATCATCATCTACTTATCAACAACCTGCACAATATCCTCCT
Found at i:7918339 original size:3 final size:3
Alignment explanation
Indices: 7918333--7918357 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7918323 AGGATCATCA
7918333 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
7918358 TTTCCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:7921026 original size:30 final size:30
Alignment explanation
Indices: 7920991--7921055 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
7920981 TAGTAAAGAT
*
7920991 AAAATTACACTTAATCCCTTAAAAATAATA
1 AAAATTACAATTAATCCCTTAAAAATAATA
** ** *
7921021 AAAATTTGAATTAATCTTTTAAAAATTATA
1 AAAATTACAATTAATCCCTTAAAAATAATA
7921051 AAAAT
1 AAAAT
7921056 ATAGGTTATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.35
Consensus pattern (30 bp):
AAAATTACAATTAATCCCTTAAAAATAATA
Found at i:7926161 original size:46 final size:46
Alignment explanation
Indices: 7926092--7926266 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
7926082 TGTAACCCGC
* * * *
7926092 CCATAAGCGAACTCGGACCCAACTCAACTAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * *
7926138 CCATAAGTGAACTTGAACTCAACTCAACGAGCTCAATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGCTC--GGAC--GTTCGCAT
* * *
7926187 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCAT
*
7926230 CCATAAGTGAACTCGGAA-TCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTC-GAACTCAACTCAACGAGCTCGGA
7926267 TGCCCAAATA
Statistics
Matches: 101, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 78 0.77
47 4 0.04
48 3 0.03
49 3 0.03
50 3 0.03
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:7928173 original size:53 final size:53
Alignment explanation
Indices: 7928034--7928175 Score: 196
Period size: 53 Copynumber: 2.7 Consensus size: 53
7928024 ATAAGTGCGC
* * ** *
7928034 CCGTTTAAGACCATAGCTGGGCTATGGCATCGATGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTAATAATGTGACT
*
7928087 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTAATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTAATAATGTGACT
* *
7928140 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTAT
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT
7928176 GATATGTGAA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 1 0.01
53 79 0.99
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTAATAATGTGACT
Found at i:7934915 original size:16 final size:18
Alignment explanation
Indices: 7934894--7934929 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
7934884 GACCAAATTT
7934894 AATTAAA-AAAA-ATAAA
1 AATTAAACAAAATATAAA
7934910 AATTAAACAAAATATAAA
1 AATTAAACAAAATATAAA
7934928 AA
1 AA
7934930 GATTGAGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 4 0.22
18 7 0.39
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (18 bp):
AATTAAACAAAATATAAA
Found at i:7936466 original size:45 final size:42
Alignment explanation
Indices: 7936380--7936464 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
7936370 AAGTAACCCG
* *
7936380 CAATCATCCTCCACTTATCAGCAGCCTGCACAATATCCTCCT
1 CAATCATCCTCCACTTATCAACAACCTGCACAATATCCTCCT
* * *
7936422 CAATCATCCTCCTCTTATCAACAACCTGGACAATATACTCCT
1 CAATCATCCTCCACTTATCAACAACCTGCACAATATCCTCCT
7936464 C
1 C
7936465 CTGAAAGTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.39, G:0.06, T:0.27
Consensus pattern (42 bp):
CAATCATCCTCCACTTATCAACAACCTGCACAATATCCTCCT
Found at i:7936701 original size:126 final size:126
Alignment explanation
Indices: 7936470--7936727 Score: 394
Period size: 126 Copynumber: 2.0 Consensus size: 126
7936460 TCCTCCTGAA
* *
7936470 AGTAATTCTGAGCTTCTCTCCACACACATTAGCTTCTCTGGTCATAACCAGCAAGACAGTACAAG
1 AGTAATTCTGAGCTCCTCTCCACACACAATAGCTTCTCTGGTCATAACCAGCAAGACAGTACAAG
* * * *
7936535 TTCCTTAGCAGCAAATACGGGAAGTGCTTCACCTCTTTACCCGCGTTTGGATCATCAGTTG
66 TTACTTAGCAGCAAATACGGGAAGTGCCTCACCTCTTTACCCGCGTTTAGATCATCAATTG
*
7936596 AGTAATTCTGAGCTCCTCTCTACACACAATAGCTTCTCTGGTCATAA-CAGGCAAGACAGTACAA
1 AGTAATTCTGAGCTCCTCTCCACACACAATAGCTTCTCTGGTCATAACCA-GCAAGACAGTACAA
* * *
7936660 GTTACTTAGCAGCAAATTCGGGAAGTGCCTCACCTGC-TTACCCGCTTTTAGATCATCAATTT
65 GTTACTTAGCAGCAAATACGGGAAGTGCCTCACCT-CTTTACCCGCGTTTAGATCATCAATTG
7936722 AGTAAT
1 AGTAAT
7936728 ATGCATTTGT
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
125 2 0.02
126 117 0.98
127 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (126 bp):
AGTAATTCTGAGCTCCTCTCCACACACAATAGCTTCTCTGGTCATAACCAGCAAGACAGTACAAG
TTACTTAGCAGCAAATACGGGAAGTGCCTCACCTCTTTACCCGCGTTTAGATCATCAATTG
Found at i:7951983 original size:16 final size:18
Alignment explanation
Indices: 7951944--7951989 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
7951934 CAAGTTCACA
7951944 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
7951961 ATTTTTATATATTAT-TT
1 ATATTTATATATTATGTT
7951978 A-ATTTATTATAT
1 ATATTTA-TATAT
7951990 ATTAAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 4 0.16
17 13 0.52
18 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:7954125 original size:7 final size:7
Alignment explanation
Indices: 7954113--7954149 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
7954103 ATATGTATGT
7954113 ATATATC
1 ATATATC
7954120 ATATATC
1 ATATATC
7954127 ATATATC
1 ATATATC
*
7954134 ATATACC
1 ATATATC
7954141 ATATCATC
1 ATAT-ATC
7954149 A
1 A
7954150 ATGTCAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 24 0.89
8 3 0.11
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (7 bp):
ATATATC
Found at i:7957113 original size:164 final size:163
Alignment explanation
Indices: 7956836--7957156 Score: 552
Period size: 164 Copynumber: 2.0 Consensus size: 163
7956826 CAAGCAGTCA
* *
7956836 CATAAACATTTGCATTCGTACACATAAAAAAATCATTATTGGCATCCCATACTAATGAAACTGAC
1 CATAAAAATTTGCATTCATACACATAAAAAAATCATTATTGGCATCCCATACTAATGAAACTGAC
* * * *
7956901 ACGTAATAATTAAGTAGTAAAGACATAATCAATCAATCTAATGGTTGAAACAATCAAAAGCTAAT
66 ACATAATAATTAAGTACTAAAGACATAATCAATAAATATAATGGTTGAAACAATCAAAAGCTAAT
*
7956966 GTCTTGCATATATGCAGTTAAAATTATTATCAG
131 GTCTTGCATATATACAGTTAAAATTATTATCAG
*
7956999 CATAAAAATTTGCATTCATACACATAAAAAAAATCATTATTGGCATCCCATACTAATGAAGCTGA
1 CATAAAAATTTGCATTCATACACAT-AAAAAAATCATTATTGGCATCCCATACTAATGAAACTGA
*
7957064 CACATAATAATTAAGTACTAAAGACATAATCGATAAATATAATGGTTGAAACAATCAAAAGCTAA
65 CACATAATAATTAAGTACTAAAGACATAATCAATAAATATAATGGTTGAAACAATCAAAAGCTAA
7957129 TGTCTTGCATATATACAGTTAAAATTAT
130 TGTCTTGCATATATACAGTTAAAATTAT
7957157 AGGAAAACAA
Statistics
Matches: 148, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
163 23 0.16
164 125 0.84
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (163 bp):
CATAAAAATTTGCATTCATACACATAAAAAAATCATTATTGGCATCCCATACTAATGAAACTGAC
ACATAATAATTAAGTACTAAAGACATAATCAATAAATATAATGGTTGAAACAATCAAAAGCTAAT
GTCTTGCATATATACAGTTAAAATTATTATCAG
Found at i:7959221 original size:4 final size:4
Alignment explanation
Indices: 7959212--7959244 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
7959202 GTTTTTTTAA
*
7959212 CTTT CTTT CTTT CTTT CTTT CTTT -TTT CATT CT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
7959245 CTTCCGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:7959687 original size:15 final size:15
Alignment explanation
Indices: 7959667--7959712 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
7959657 ACAACACAAT
7959667 AACATAAGTGATTAA
1 AACATAAGTGATTAA
*
7959682 AACATAA-T-ATTTCA
1 AACATAAGTGA-TTAA
7959696 AACATAAGTGATTAA
1 AACATAAGTGATTAA
7959711 AA
1 AA
7959713 TGTAACTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 1 0.04
14 11 0.42
15 13 0.50
16 1 0.04
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.28
Consensus pattern (15 bp):
AACATAAGTGATTAA
Found at i:7960808 original size:9 final size:9
Alignment explanation
Indices: 7960794--7960836 Score: 70
Period size: 9 Copynumber: 4.8 Consensus size: 9
7960784 TTCTTATATT
7960794 TTTTTTTAC
1 TTTTTTTAC
7960803 TTTTTTCTAC
1 TTTTTT-TAC
7960813 TTTTTTTAC
1 TTTTTTTAC
7960822 -TTTTTTAC
1 TTTTTTTAC
7960830 TTTTTTT
1 TTTTTTT
7960837 TCTTATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.25
9 15 0.47
10 9 0.28
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:7960808 original size:10 final size:10
Alignment explanation
Indices: 7960793--7960837 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
7960783 GTTCTTATAT
7960793 TTTTTTTTAC
1 TTTTTTTTAC
*
7960803 TTTTTTCTAC
1 TTTTTTTTAC
7960813 -TTTTTTTAC
1 TTTTTTTTAC
7960822 --TTTTTTAC
1 TTTTTTTTAC
7960830 TTTTTTTT
1 TTTTTTTT
7960838 CTTATATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 8 0.26
9 8 0.26
10 15 0.48
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTTTTAC
Found at i:7960818 original size:19 final size:17
Alignment explanation
Indices: 7960794--7960836 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 17
7960784 TTCTTATATT
7960794 TTTTTTTACTTTTTTCTAC
1 TTTTTTTAC-TTTTT-TAC
7960813 TTTTTTTACTTTTTTAC
1 TTTTTTTACTTTTTTAC
7960830 TTTTTTT
1 TTTTTTT
7960837 TCTTATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 10 0.42
18 5 0.21
19 9 0.38
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTTACTTTTTTAC
Found at i:7960825 original size:7 final size:8
Alignment explanation
Indices: 7960795--7960835 Score: 55
Period size: 8 Copynumber: 4.8 Consensus size: 8
7960785 TCTTATATTT
7960795 TTTTTTAC
1 TTTTTTAC
7960803 TTTTTTCTAC
1 -TTTTT-TAC
7960813 TTTTTTTAC
1 -TTTTTTAC
7960822 TTTTTTAC
1 TTTTTTAC
7960830 TTTTTT
1 TTTTTT
7960836 TTCTTATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 14 0.45
9 8 0.26
10 9 0.29
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTTAC
Found at i:7960837 original size:19 final size:18
Alignment explanation
Indices: 7960792--7960837 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
7960782 GGTTCTTATA
7960792 TTTTTTTTTACTTTTTTC
1 TTTTTTTTTACTTTTTTC
*
7960810 TACTTTTTTTACTTTTTTAC
1 T-TTTTTTTTACTTTTTT-C
7960830 TTTTTTTT
1 TTTTTTTT
7960838 CTTATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 21 0.88
20 2 0.08
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTTTTTACTTTTTTC
Found at i:7960922 original size:36 final size:36
Alignment explanation
Indices: 7960853--7960926 Score: 98
Period size: 36 Copynumber: 2.0 Consensus size: 36
7960843 ATTTTGTCTC
*
7960853 TTTCTTAGATTTTTTTCTTTTTTAAGTTTTATATTAT
1 TTTCTTAGATTTTTTTCTTATTTAAG-TTTATATTAT
7960890 TTTCTTA-ATTTATTTTGCTTATTTAA-TTTATATTAT
1 TTTCTTAGATTT-TTTT-CTTATTTAAGTTTATATTAT
7960926 T
1 T
7960927 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
36 15 0.44
37 11 0.32
38 8 0.24
ACGTcount: A:0.22, C:0.05, G:0.04, T:0.69
Consensus pattern (36 bp):
TTTCTTAGATTTTTTTCTTATTTAAGTTTATATTAT
Found at i:7960931 original size:18 final size:17
Alignment explanation
Indices: 7960880--7960927 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
7960870 TTTTTTAAGT
*
7960880 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
* *
7960898 TTTATTTTGCTTATTTAA
1 TTTATATT-ATTATTTAA
7960916 TTTATATTATTA
1 TTTATATTATTA
7960928 ATTTTAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Done.