Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 222 of 356
Found at i:72779422 original size:44 final size:46
Alignment explanation
Indices: 72779333--72779423 Score: 150
Period size: 44 Copynumber: 2.0 Consensus size: 46
72779323 GAATAGAGGC
*
72779333 GTAATGGAACAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAACAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
*
72779379 GTAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAAT
1 GTAATGGAACAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
72779423 G
1 G
72779424 GAATAGAGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.47
45 3 0.07
46 20 0.47
ACGTcount: A:0.26, C:0.05, G:0.31, T:0.37
Consensus pattern (46 bp):
GTAATGGAACAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
Found at i:72779424 original size:39 final size:44
Alignment explanation
Indices: 72779333--72779440 Score: 136
Period size: 46 Copynumber: 2.5 Consensus size: 44
72779323 GAATAGAGGC
* *
72779333 GTAATGGAACAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTT--AT
72779379 GTAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTAT
*
72779419 G-AATGGAATAGAGGTGTAATAG
1 GTAATGGAATAGAGGCGTAATAG
72779441 CATAAGGAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
39 18 0.31
40 3 0.05
43 1 0.02
44 13 0.22
45 3 0.05
46 20 0.34
ACGTcount: A:0.29, C:0.05, G:0.31, T:0.35
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTAT
Found at i:72779602 original size:15 final size:15
Alignment explanation
Indices: 72779582--72779620 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
72779572 CATAATTGTT
72779582 ATAAAATATAATTTA
1 ATAAAATATAATTTA
72779597 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
72779614 ATAAAAT
1 ATAAAAT
72779621 TGTTAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:72779627 original size:17 final size:17
Alignment explanation
Indices: 72779587--72779620 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
72779577 TTGTTATAAA
72779587 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
72779604 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
72779621 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:72779692 original size:20 final size:21
Alignment explanation
Indices: 72779653--72779692 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
72779643 AATTTACTAA
*
72779653 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
72779674 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
72779693 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:72779734 original size:54 final size:54
Alignment explanation
Indices: 72779544--72779739 Score: 144
Period size: 54 Copynumber: 3.4 Consensus size: 54
72779534 TATTAATATA
* * * * * *
72779544 AATAATAAATAATTTAATCATATTTTAACATAATTGTTATAAAATATAATTTAAT
1 AATAATAAATAATTAAAT-AAAATTTAAAATAATTATTATTAAATATAATTTAAT
* * * **
72779599 AA-AATATATAATTTAATAAAATTGTTAATAA-ATATTCTTATATAAATTTACTAATAAAAT
1 AATAATAAATAATTAAATAAAA-T-TTAA-AATA-ATTATTAT-TAAA--TA-TAATTTAAT
* * *
72779659 CATAATATATAATACTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAAT
1 AATAATAAATAAT--T-AAATAAAATTTAAAATAATTATTATTAAATATAATTTAAT
72779716 AATAATAAATAATTAAATAAAATT
1 AATAATAAATAATTAAATAAAATT
72779740 CTTATTCTTA
Statistics
Matches: 111, Mismatches: 17, Indels: 27
0.72 0.11 0.17
Matches are distributed among these distances:
53 2 0.02
54 24 0.22
55 8 0.07
56 8 0.07
57 21 0.19
58 2 0.02
59 2 0.02
60 12 0.11
61 19 0.17
62 5 0.05
63 2 0.02
64 6 0.05
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (54 bp):
AATAATAAATAATTAAATAAAATTTAAAATAATTATTATTAAATATAATTTAAT
Found at i:72781257 original size:49 final size:49
Alignment explanation
Indices: 72781185--72781288 Score: 145
Period size: 49 Copynumber: 2.1 Consensus size: 49
72781175 GAAAAAAAAC
* * ** * *
72781185 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATAAAAAACTCAACACTGTATA
*
72781234 AAATTAAAATTGAGTTCAATATCATGAATAAAAAACTCAACACTGTATA
1 AAATTAAAATTAAGTTCAATATCATGAATAAAAAACTCAACACTGTATA
72781283 AAATTA
1 AAATTA
72781289 TAACACATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.31
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATAAAAAACTCAACACTGTATA
Found at i:72783449 original size:12 final size:12
Alignment explanation
Indices: 72783425--72783458 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
72783415 CCGCATTTTA
72783425 AGCAAAAGAACG
1 AGCAAAAGAACG
* *
72783437 AGCCAAAGCACG
1 AGCAAAAGAACG
72783449 AGCAAAAGAA
1 AGCAAAAGAA
72783459 AATAAATAAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.21, G:0.24, T:0.00
Consensus pattern (12 bp):
AGCAAAAGAACG
Found at i:72785403 original size:13 final size:13
Alignment explanation
Indices: 72785385--72785409 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72785375 AACATTCGGC
72785385 CGGTGGGAATAAT
1 CGGTGGGAATAAT
72785398 CGGTGGGAATAA
1 CGGTGGGAATAA
72785410 ACAAATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.40, T:0.20
Consensus pattern (13 bp):
CGGTGGGAATAAT
Found at i:72786472 original size:21 final size:22
Alignment explanation
Indices: 72786419--72786472 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
72786409 CTTAATTAAG
72786419 TAAATTAAGATTAATTAAAACTA
1 TAAA-TAAGATTAATTAAAACTA
72786442 -AAA-AATGATTAATTAAAA-TA
1 TAAATAA-GATTAATTAAAACTA
72786462 TAAATAAGATT
1 TAAATAAGATT
72786473 TATGAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
20 4 0.14
21 19 0.68
22 5 0.18
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (22 bp):
TAAATAAGATTAATTAAAACTA
Found at i:72786665 original size:14 final size:14
Alignment explanation
Indices: 72786646--72786681 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
72786636 TAAAAGTAAG
*
72786646 TCATTTTTCAGAAA
1 TCATTTTCCAGAAA
72786660 TCATTTTCCAGAAA
1 TCATTTTCCAGAAA
*
72786674 TTATTTTC
1 TCATTTTC
72786682 AGCGAAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.47
Consensus pattern (14 bp):
TCATTTTCCAGAAA
Found at i:72793006 original size:50 final size:49
Alignment explanation
Indices: 72792820--72793173 Score: 334
Period size: 50 Copynumber: 7.3 Consensus size: 49
72792810 GTGCTAATGT
* *
72792820 TGTCTGGGACAT-GCATCGGC-C-ATATTATGAGAGCCAGTGTAAGACTA
1 TGTCTGGGACATGGCATCGGCTCGATA-TATGAGAGTCAGTGTAAGACCA
* * *
72792867 TGTCTGGGACATGGCATCGGCCTCGAGACT-TGAAAG-CTAGTATAAGACCA
1 TGTCTGGGACATGGCATCGG-CTCGATA-TATGAGAGTC-AGTGTAAGACCA
* * * * *
72792917 AGTCTAGGACATGGAATCGGCTTG--ATAT--GTGTCAGTGTAAGACCA
1 TGTCTGGGACATGGCATCGGCTCGATATATGAGAGTCAGTGTAAGACCA
* *
72792962 TGTCTGGGACATGGCATCAGTCTCAATATATGAGAGTCAGTGTAAGACCA
1 TGTCTGGGACATGGCATC-GGCTCGATATATGAGAGTCAGTGTAAGACCA
* * * * *
72793012 TGTCTGAGACATGACATCGATCTCGATATATGAAAGTCAGTGTAAGGCCA
1 TGTCTGGGACATGGCATCG-GCTCGATATATGAGAGTCAGTGTAAGACCA
*
72793062 TGTCTGGGACATGGCATCGACTTCGATATATGAGAGTCAGTGTAAGACCA
1 TGTCTGGGACATGGCATCGGC-TCGATATATGAGAGTCAGTGTAAGACCA
* ** * *
72793112 TGTCTGGGACATGGCATCGACTTCGATGCAT--GAGCCAATGTAAGACCA
1 TGTCTGGGACATGGCATCGGC-TCGATATATGAGAGTCAGTGTAAGACCA
* *
72793160 TGTTTGGGATATGG
1 TGTCTGGGACATGG
72793174 TGTCGGCATC
Statistics
Matches: 258, Mismatches: 35, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
45 27 0.10
46 5 0.02
47 14 0.05
48 38 0.15
49 7 0.03
50 164 0.64
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (49 bp):
TGTCTGGGACATGGCATCGGCTCGATATATGAGAGTCAGTGTAAGACCA
Found at i:72795609 original size:19 final size:19
Alignment explanation
Indices: 72795598--72795635 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
72795588 TTTCTTTTGC
*
72795598 TATTTTAATTTTGTAGTGA
1 TATTTTAATTTTCTAGTGA
*
72795617 TATTTTAATTTTGTAGTGA
1 TATTTTAATTTTCTAGTGA
72795636 AAAGCTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (19 bp):
TATTTTAATTTTCTAGTGA
Found at i:72796303 original size:23 final size:23
Alignment explanation
Indices: 72796257--72796303 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
72796247 TTTACTTTAG
*
72796257 TTTTCTTAGGTTTTCTCTTCTTC
1 TTTTCTTAGGTTTTCTATTCTTC
*
72796280 TTTTC-TAGGTTTTCATATTTTTC
1 TTTTCTTAGGTTTTC-TATTCTTC
72796303 T
1 T
72796304 ATCTTCTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.09, C:0.17, G:0.09, T:0.66
Consensus pattern (23 bp):
TTTTCTTAGGTTTTCTATTCTTC
Found at i:72796466 original size:21 final size:21
Alignment explanation
Indices: 72796440--72796480 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72796430 CTTGTTTTGA
*
72796440 CATTTTC-GTCTTTGTTTAATG
1 CATTTTCAGT-TTTCTTTAATG
72796461 CATTTTCAGTTTTCTTTAAT
1 CATTTTCAGTTTTCTTTAAT
72796481 TTTGGTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.59
Consensus pattern (21 bp):
CATTTTCAGTTTTCTTTAATG
Found at i:72799845 original size:13 final size:13
Alignment explanation
Indices: 72799829--72799854 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72799819 TCAATGGCAG
72799829 TGTCAAATGTTCT
1 TGTCAAATGTTCT
72799842 TGTCAAATGTTCT
1 TGTCAAATGTTCT
72799855 AAGGCAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
TGTCAAATGTTCT
Found at i:72801780 original size:21 final size:21
Alignment explanation
Indices: 72801713--72801772 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
72801703 CGCTGTTTCT
*
72801713 AATCTCACTGCTACAGTATCC
1 AATCTTACTGCTACAGTATCC
*
72801734 AATCTTACTGCTATAGTATCC
1 AATCTTACTGCTACAGTATCC
72801755 AATCTTACTGCTACAGTA
1 AATCTTACTGCTACAGTA
72801773 ATTAATCTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (21 bp):
AATCTTACTGCTACAGTATCC
Found at i:72811491 original size:79 final size:79
Alignment explanation
Indices: 72811358--72811522 Score: 321
Period size: 79 Copynumber: 2.1 Consensus size: 79
72811348 TCTATGTATT
72811358 ATTCTGAATTTACCAGCTTTACAATTTGTATATCTAGCATTATCCAAGTCAAAGTTGTCTTCAGA
1 ATTCTGAATTTACCAGCTTTACAATTTGTATATCTAGCATTATCCAAGTCAAAGTTGTCTTCAGA
72811423 GATACCCGTGCATG
66 GATACCCGTGCATG
*
72811437 ATTCTGAATTTACCAGCTTTACAATTTGTATATCTAGCATTATCCAAGTTAAAGTTGTCTTCAGA
1 ATTCTGAATTTACCAGCTTTACAATTTGTATATCTAGCATTATCCAAGTCAAAGTTGTCTTCAGA
72811502 GATACCCGTGCATG
66 GATACCCGTGCATG
72811516 ATTCTGA
1 ATTCTGA
72811523 TTTTTCTATG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 85 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (79 bp):
ATTCTGAATTTACCAGCTTTACAATTTGTATATCTAGCATTATCCAAGTCAAAGTTGTCTTCAGA
GATACCCGTGCATG
Found at i:72832534 original size:26 final size:26
Alignment explanation
Indices: 72832513--72832562 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
72832503 AACAGGAAGT
*
72832513 TCACAAAGAACTTTTAATCAGGAAAC
1 TCACAAAGAACCTTTAATCAGGAAAC
* *
72832539 TCACGAAGAGCCTTTAATCAGGAA
1 TCACAAAGAACCTTTAATCAGGAA
72832563 CTCCGGATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (26 bp):
TCACAAAGAACCTTTAATCAGGAAAC
Found at i:72836156 original size:44 final size:44
Alignment explanation
Indices: 72836093--72836180 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
72836083 TGATAGAGAG
72836093 AGTGTAAATTGCATATTTGCAATTCAGAGCTTTAACCAGTTGAA
1 AGTGTAAATTGCATATTTGCAATTCAGAGCTTTAACCAGTTGAA
72836137 AGTGTAAATTGCATATTTGCAATTCAGAGCTTTAACCAGTTGAA
1 AGTGTAAATTGCATATTTGCAATTCAGAGCTTTAACCAGTTGAA
72836181 GTAGAAAATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (44 bp):
AGTGTAAATTGCATATTTGCAATTCAGAGCTTTAACCAGTTGAA
Found at i:72837637 original size:42 final size:42
Alignment explanation
Indices: 72837591--72837678 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
72837581 CACATGCCCA
*
72837591 TGTGCTAGGCCGTGTGTCACACACGGCTGAGACACACACCCG
1 TGTGCTAGGCCATGTGTCACACACGGCTGAGACACACACCCG
*
72837633 TGTGCTAGGCCATGTGTCACACACGGCTGAGACATACACCCG
1 TGTGCTAGGCCATGTGTCACACACGGCTGAGACACACACCCG
72837675 TGTG
1 TGTG
72837679 TCTGCTCGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (42 bp):
TGTGCTAGGCCATGTGTCACACACGGCTGAGACACACACCCG
Found at i:72839172 original size:26 final size:25
Alignment explanation
Indices: 72839143--72839196 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
72839133 AACAGGAAGT
* *
72839143 TCACAAAGAACTTTTAATCAGGAAAC
1 TCACAAAGAACCTTTAACCAGG-AAC
* *
72839169 TCACCAAGAGCCTTTAACCAGGAAC
1 TCACAAAGAACCTTTAACCAGGAAC
72839194 TCA
1 TCA
72839197 GGATAGGGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.41, C:0.26, G:0.13, T:0.20
Consensus pattern (25 bp):
TCACAAAGAACCTTTAACCAGGAAC
Found at i:72842779 original size:48 final size:48
Alignment explanation
Indices: 72842707--72842958 Score: 387
Period size: 48 Copynumber: 5.2 Consensus size: 48
72842697 CAAGATAAAT
* * *
72842707 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
72842755 ATATGTATATGTGGTAAAGTCGAATGGCTAATCTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
72842803 ATATGTATATGTGGTAAAGCGGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
72842851 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
72842899 ATATGTATATTTGCTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
72842947 ATGTGTGTATGT
1 ATATGTATATGT
72842959 TGTGGCCGAA
Statistics
Matches: 185, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 185 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:72843139 original size:37 final size:37
Alignment explanation
Indices: 72843089--72843191 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
72843079 GGAAATATAT
72843089 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72843126 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72843163 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
72843192 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72846374 original size:22 final size:22
Alignment explanation
Indices: 72846328--72846390 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
72846318 AGTAGGCACC
* * * *
72846328 GAAGTGCAAAACAGTAGGCACT
1 GAAGTGCAGAACAATAAGCATT
* *
72846350 GAAGTGTAGAACGATAAGCATT
1 GAAGTGCAGAACAATAAGCATT
72846372 GAAGTGCAGAACAATAAGC
1 GAAGTGCAGAACAATAAGC
72846391 GCTAAAGCGC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.16
Consensus pattern (22 bp):
GAAGTGCAGAACAATAAGCATT
Found at i:72846812 original size:32 final size:32
Alignment explanation
Indices: 72846771--72846836 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
72846761 TAATATTCCA
72846771 AAATTCACGACAACATCAAATTTTCTCATTCT
1 AAATTCACGACAACATCAAATTTTCTCATTCT
72846803 AAATTCACGACAACATCAAATTTTCTCATTCT
1 AAATTCACGACAACATCAAATTTTCTCATTCT
72846835 AA
1 AA
72846837 GTATTATGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.33
Consensus pattern (32 bp):
AAATTCACGACAACATCAAATTTTCTCATTCT
Found at i:72851225 original size:38 final size:38
Alignment explanation
Indices: 72851180--72851341 Score: 175
Period size: 38 Copynumber: 4.2 Consensus size: 38
72851170 GGCTTAAAGA
72851180 CCCGCAGGCTATATGCTGGTATTATATCTGGGTTAAAT
1 CCCGCAGGCTATATGCTGGTATTATATCTGGGTTAAAT
* ** * *
72851218 CCTGCAGGCT-TCGCGCTAGTAATATATCTGGGTTAAAT
1 CCCGCAGGCTAT-ATGCTGGTATTATATCTGGGTTAAAT
* *
72851256 CCCGCAGGCTTTATGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTATATGCTGGTATTATATCTGGGTTAAAT
* * *
72851294 CCCGCAGGCCTA-GTGTTGGTATTATATCTGAGCTTAAAGT
1 CCCGCAGG-CTATATGCTGGTATTATATCTG-GGTTAAA-T
*
72851334 CTCGCAGG
1 CCCGCAGG
72851342 TTTTGTGCTG
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
37 1 0.01
38 84 0.82
39 9 0.09
40 8 0.08
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (38 bp):
CCCGCAGGCTATATGCTGGTATTATATCTGGGTTAAAT
Found at i:72851320 original size:76 final size:78
Alignment explanation
Indices: 72851171--72851353 Score: 226
Period size: 76 Copynumber: 2.4 Consensus size: 78
72851161 GTGTACCCAG
* * * * * *
72851171 GCTTAAAGACCCGCAGGCTATATGCTGGTATTATATCTGGGTTAAATCCTGCAGGCTTCGCGCTA
1 GCTTAAAGTCCCGCAGGCTTTATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAGCGCTA
72851236 GTAATATATCTG-
66 GTAATATATCTGA
* * * *
72851248 GGTTAAA-TCCCGCAGGCTTTATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAGTGTTG
1 GCTTAAAGTCCCGCAGGCTTTATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAGCGCTA
*
72851312 GTATTATATCTGA
66 GTAATATATCTGA
* * *
72851325 GCTTAAAGTCTCGCAGGTTTTGTGCTGGT
1 GCTTAAAGTCCCGCAGGCTTTATGCTGGT
72851354 GACTGGATTC
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
76 59 0.66
77 12 0.13
78 18 0.20
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (78 bp):
GCTTAAAGTCCCGCAGGCTTTATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAGCGCTA
GTAATATATCTGA
Found at i:72853202 original size:18 final size:18
Alignment explanation
Indices: 72853181--72853217 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
72853171 AGAATTAGAG
72853181 TAAGTTTCTTTTGCCGCA
1 TAAGTTTCTTTTGCCGCA
72853199 TAAGTTTCTTTTGCCGCA
1 TAAGTTTCTTTTGCCGCA
72853217 T
1 T
72853218 CCCATATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46
Consensus pattern (18 bp):
TAAGTTTCTTTTGCCGCA
Found at i:72855192 original size:34 final size:34
Alignment explanation
Indices: 72855154--72855235 Score: 164
Period size: 34 Copynumber: 2.4 Consensus size: 34
72855144 TTCTCAATGC
72855154 TTTCTCAAACAGCTTCTTCAATGCTTTTAATGTT
1 TTTCTCAAACAGCTTCTTCAATGCTTTTAATGTT
72855188 TTTCTCAAACAGCTTCTTCAATGCTTTTAATGTT
1 TTTCTCAAACAGCTTCTTCAATGCTTTTAATGTT
72855222 TTTCTCAAACAGCT
1 TTTCTCAAACAGCT
72855236 CCTCCTTTCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.45
Consensus pattern (34 bp):
TTTCTCAAACAGCTTCTTCAATGCTTTTAATGTT
Found at i:72858541 original size:47 final size:47
Alignment explanation
Indices: 72858492--72858705 Score: 329
Period size: 47 Copynumber: 4.6 Consensus size: 47
72858482 ATATATGAGC
* * * *
72858492 TAAGGCCGAATGGCAAATGTGATGAATATGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* *
72858539 TAAGGCCGAATGGCCAATGTGATGAATGTGAACGTGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * ** *
72858586 TAAGACCGAATGGTCAATGTGATGAATGTGAACATTTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
72858633 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
72858680 TAAGGCCGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
72858706 CGTGGAAGTG
Statistics
Matches: 151, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 151 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
Found at i:72858655 original size:22 final size:22
Alignment explanation
Indices: 72858627--72858702 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
72858617 ACATTTATAT
72858627 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
72858649 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
72858671 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
72858696 ATGTGAT
1 ATGTGAT
72858703 GAACGTGGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:72858735 original size:94 final size:94
Alignment explanation
Indices: 72858492--72858739 Score: 302
Period size: 94 Copynumber: 2.6 Consensus size: 94
72858482 ATATATGAGC
* * ** * * * **
72858492 TAAGGCCGAATGGCAAATGTGATGAATATGAACATGCATTTGTGTGCTAAGGCCGAATGGCCAAT
1 TAAGACCGAATGGCCAATGTGATGAACGTGAACATGTATATATGTGAGAAGGCCGAATGGCCAAT
* *
72858557 GTGATGAATGTGAACGTGCATTTGTGTGA
66 GTGATGAATGTGAACATGCATATGTGTGA
* * * *
72858586 TAAGACCGAATGGTCAATGTGATGAATGTGAACATTTATATATGTGATAAGGCCGAATGGCCAAT
1 TAAGACCGAATGGCCAATGTGATGAACGTGAACATGTATATATGTGAGAAGGCCGAATGGCCAAT
72858651 GTGATGAATGTGAACATGCATATGTGTGA
66 GTGATGAATGTGAACATGCATATGTGTGA
* * *
72858680 TAAGGCCGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGGGAA-GCCGAATGG
1 TAAGACCGAATGGCCAATGTGATGAACGT-GAACATGTATATATGT-GAGAAGGCCGAATGG
72858740 TTAATGCGAA
Statistics
Matches: 134, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
94 128 0.96
95 6 0.04
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (94 bp):
TAAGACCGAATGGCCAATGTGATGAACGTGAACATGTATATATGTGAGAAGGCCGAATGGCCAAT
GTGATGAATGTGAACATGCATATGTGTGA
Found at i:72858739 original size:47 final size:47
Alignment explanation
Indices: 72858461--72858705 Score: 319
Period size: 47 Copynumber: 5.2 Consensus size: 47
72858451 TTAGGATTTT
* ** * * * *
72858461 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
72858508 ATGTGATGAATATGAACATGCATTTGTGTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
72858555 ATGTGATGAATGTGAACGTGCATTTGTGTGATAAGACCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
72858602 ATGTGATGAATGTGAACATTTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
72858649 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72858696 ATGTGATGAA
1 ATGTGATGAA
72858706 CGTGGAAGTG
Statistics
Matches: 174, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72868224 original size:40 final size:40
Alignment explanation
Indices: 72868154--72868251 Score: 137
Period size: 40 Copynumber: 2.5 Consensus size: 40
72868144 AAACCAAGTA
* * *
72868154 CCTTCGGGATTTAG-CCGGATATAACTACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAACTACTCGCACAAATG
*
72868193 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAACT-ACTCGCACAAATG
72868233 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72868252 TTATCATCCG
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 15 0.28
40 38 0.72
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAACTACTCGCACAAATG
Found at i:72871779 original size:15 final size:16
Alignment explanation
Indices: 72871759--72871788 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72871749 TTTTAAAGAT
72871759 TAAAATT-GGTTTTTC
1 TAAAATTAGGTTTTTC
72871774 TAAAATTAGGTTTTT
1 TAAAATTAGGTTTTT
72871789 TTTAGAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.30, C:0.03, G:0.13, T:0.53
Consensus pattern (16 bp):
TAAAATTAGGTTTTTC
Found at i:72875093 original size:40 final size:40
Alignment explanation
Indices: 72874885--72875089 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
72874875 CGGGCTTTAA
** *
72874885 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
72874925 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
72874965 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72875005 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72875045 CTGGA-ATTAGTCACTGGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
72875085 CCGGA
1 CCGGA
72875090 ATTATCATCC
Statistics
Matches: 149, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 148 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72879991 original size:17 final size:17
Alignment explanation
Indices: 72879969--72880004 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
72879959 AGGTTAGTGG
72879969 ACCATTGGAAGGCCCAA
1 ACCATTGGAAGGCCCAA
72879986 ACCATTGGAAGGCCCAA
1 ACCATTGGAAGGCCCAA
72880003 AC
1 AC
72880005 TTAAGTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.31, G:0.22, T:0.11
Consensus pattern (17 bp):
ACCATTGGAAGGCCCAA
Found at i:72880860 original size:8 final size:8
Alignment explanation
Indices: 72880847--72880874 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
72880837 GCCGAAAACA
72880847 GGCCAATG
1 GGCCAATG
72880855 GGCCAATG
1 GGCCAATG
72880863 GGCCAATG
1 GGCCAATG
72880871 GGCC
1 GGCC
72880875 CACTTTGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.29, G:0.39, T:0.11
Consensus pattern (8 bp):
GGCCAATG
Found at i:72883638 original size:14 final size:14
Alignment explanation
Indices: 72883619--72883648 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72883609 ACCCCTTCAT
*
72883619 TCCCTCATTCATCA
1 TCCCTCATCCATCA
72883633 TCCCTCATCCATCA
1 TCCCTCATCCATCA
72883647 TC
1 TC
72883649 ATCCTATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:72891013 original size:16 final size:16
Alignment explanation
Indices: 72890992--72891025 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
72890982 CGTGTGGTTC
72890992 TTAGAAGCATACTGCT
1 TTAGAAGCATACTGCT
72891008 TTAGAAGCATACTGCT
1 TTAGAAGCATACTGCT
72891024 TT
1 TT
72891026 TCTTACATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (16 bp):
TTAGAAGCATACTGCT
Found at i:72895840 original size:24 final size:24
Alignment explanation
Indices: 72895792--72895837 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
72895782 TTCTTTCCTC
*
72895792 CTTTTCCCTCTTTATTCCTTTCCT
1 CTTTTCCCTCTTTATTCCTTCCCT
72895816 CTTTTCCC-CTTT-TCTCCTTCCC
1 CTTTTCCCTCTTTAT-TCCTTCCC
72895838 CTCCGACTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 11 0.55
24 8 0.40
ACGTcount: A:0.02, C:0.43, G:0.00, T:0.54
Consensus pattern (24 bp):
CTTTTCCCTCTTTATTCCTTCCCT
Found at i:72897539 original size:17 final size:17
Alignment explanation
Indices: 72897509--72897555 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
72897499 TTATTTCTAC
72897509 TTTA-TTTTACTTTTCCT
1 TTTATTTTTA-TTTTCCT
* *
72897526 TTTGTTTTTATTTTTCT
1 TTTATTTTTATTTTCCT
*
72897543 TTTATATTTATTT
1 TTTATTTTTATTT
72897556 CTATTTCCAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTATTTTTATTTTCCT
Found at i:72907706 original size:14 final size:14
Alignment explanation
Indices: 72907687--72907716 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72907677 ATTCAACTAA
*
72907687 ACTAAAATGATTAT
1 ACTAAAATGATCAT
72907701 ACTAAAATGATCAT
1 ACTAAAATGATCAT
72907715 AC
1 AC
72907717 ATATTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (14 bp):
ACTAAAATGATCAT
Found at i:72913973 original size:33 final size:33
Alignment explanation
Indices: 72913900--72914006 Score: 142
Period size: 33 Copynumber: 3.2 Consensus size: 33
72913890 AATAACACAT
* * * *
72913900 TATCAATACAATCTGGGCCAAAGCCCTATTCAG
1 TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
* * *
72913933 TAACAGTACAGTCTGGGCCTAAGCTCTATACAA
1 TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
72913966 TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
1 TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
*
72913999 TAGCAGTA
1 TATCAGTA
72914007 TGGGCCTAAG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (33 bp):
TATCAGTACAGTCTGGGCCTAAGCCCTATACAG
Found at i:72914180 original size:26 final size:26
Alignment explanation
Indices: 72914151--72914202 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
72914141 CACCAATATC
* *
72914151 GCAGCAAAGCTGCCAGAAATAATAAT
1 GCAGCAAAGCTACCAGAAACAATAAT
*
72914177 GCAGCATAGCTACCAGAAACAATAAT
1 GCAGCAAAGCTACCAGAAACAATAAT
72914203 TGTTGCAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.15
Consensus pattern (26 bp):
GCAGCAAAGCTACCAGAAACAATAAT
Found at i:72914241 original size:27 final size:26
Alignment explanation
Indices: 72914180--72914280 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 26
72914170 TAATAATGCA
* * * *
72914180 GCATAGCTACCAGAAACAATAATTGTT
1 GCATAGCCACCAG-TACAGTAATTGTG
* *
72914207 GCAAAGCCACTAGTATCAGTAATTGTG
1 GCATAGCCACCAGTA-CAGTAATTGTG
72914234 GCATAGCCACCAGTAACAGTGAA-TGTG
1 GCATAGCCACCAGT-ACAGT-AATTGTG
* *
72914261 ACATAGTCACCAGTACAGTA
1 GCATAGCCACCAGTACAGTA
72914281 CTTCCTCCAT
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.02
26 6 0.10
27 51 0.84
28 3 0.05
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (26 bp):
GCATAGCCACCAGTACAGTAATTGTG
Found at i:72927578 original size:50 final size:49
Alignment explanation
Indices: 72927503--72927892 Score: 585
Period size: 48 Copynumber: 7.9 Consensus size: 49
72927493 TGATGTATAG
72927503 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGTATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA-TATATATATGA
72927553 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATATATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-ATATATATATGA
*
72927607 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA-ATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGA
*
72927655 GATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AATATATATATGA
*
72927705 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA-ATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGA
*
72927753 GATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AATATATATATGA
* *
72927803 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA-ATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGA
*
72927851 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA-ATAT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATAT
72927893 GTAGGCGATG
Statistics
Matches: 317, Mismatches: 10, Indels: 28
0.89 0.03 0.08
Matches are distributed among these distances:
47 2 0.01
48 135 0.43
49 9 0.03
50 120 0.38
51 2 0.01
54 48 0.15
55 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (49 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGA
Found at i:72927911 original size:98 final size:98
Alignment explanation
Indices: 72927503--72927892 Score: 649
Period size: 98 Copynumber: 3.9 Consensus size: 98
72927493 TGATGTATAG
* *
72927503 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGTATATATATGAGATATGTATATGTGG
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA--ATATGTATGAGATATGCATATGTGG
72927568 TAAAGCCGAATGG-CTAATGTGAAAAATATATATATATGA
64 TAAAGCCGAATGGTC-AATGTG---AA-ATATATATATGA
72927607 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
72927672 AAGCCGAATGGTCAATGTGAAATATATATATGA
66 AAGCCGAATGGTCAATGTGAAATATATATATGA
72927705 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
72927770 AAGCCGAATGGTCAATGTGAAATATATATATGA
66 AAGCCGAATGGTCAATGTGAAATATATATATGA
* *
72927803 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
*
72927868 AAGCCGAATGG-CTAGTGTGAAATAT
66 AAGCCGAATGGTC-AATGTGAAATAT
72927893 GTAGGCGATG
Statistics
Matches: 279, Mismatches: 5, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
97 1 0.00
98 195 0.70
99 2 0.01
102 42 0.15
103 1 0.00
104 38 0.14
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTA
AAGCCGAATGGTCAATGTGAAATATATATATGA
Found at i:72928152 original size:37 final size:37
Alignment explanation
Indices: 72928044--72928152 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
72928034 AAATATATAT
* *
72928044 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
72928081 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
72928118 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
72928153 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:72937168 original size:33 final size:33
Alignment explanation
Indices: 72937126--72937263 Score: 168
Period size: 33 Copynumber: 4.2 Consensus size: 33
72937116 ACAGTATAAA
* * *
72937126 TACAATCTGGGCCAAAGCCCTATTCAGTAACAG
1 TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
*
72937159 TACAGTCTGGGCCTAAGCCCTATACAGTATCAG
1 TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
* * * *
72937192 TACGGTCTGCGCCTAAGCCCTATACAATATCAG
1 TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
* * * *
72937225 TACAGTCTAGGCCTAAGCCCTGTGCAGTAACAA
1 TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
72937258 TACAGT
1 TACAGT
72937264 ACGATGTAAT
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 90 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (33 bp):
TACAGTCTGGGCCTAAGCCCTATACAGTAACAG
Found at i:72937451 original size:27 final size:27
Alignment explanation
Indices: 72937421--72937499 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
72937411 TGCCAGAAAT
* *
72937421 AGTAATTGTGGCAAAGCCACCAGTATC
1 AGTAATTGTGGCATAGCCACCAGTAAC
*
72937448 AGTAATTGTGGCATGGCCACCAGTAAC
1 AGTAATTGTGGCATAGCCACCAGTAAC
* *
72937475 AGTGAA-TGTGACATAGTCACCAGTA
1 AGT-AATTGTGGCATAGCCACCAGTA
72937500 CAATACTTCC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 43 0.96
28 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (27 bp):
AGTAATTGTGGCATAGCCACCAGTAAC
Found at i:72941186 original size:67 final size:66
Alignment explanation
Indices: 72941059--72941187 Score: 147
Period size: 67 Copynumber: 1.9 Consensus size: 66
72941049 TACTATGTGT
* * * * *
72941059 ACACCATGTAGACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACAGGATAAATG-AGCTAGGTCACATGCATGATACCAAGTGAA
72941124 GG
65 GG
72941126 ACACCATGTAGACAAGAGAGCTAC-GAGATAAACTG-GCTAGGTCACATGCCAT-ATAACCAAGT
1 ACACCATGTAGACAAGAGAGCTACAG-GATAAA-TGAGCTAGGTCACATG-CATGAT-ACCAAGT
72941188 TACAAGTGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
66 14 0.26
67 37 0.70
68 2 0.04
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (66 bp):
ACACCATGTAGACAAGAGAGCTACAGGATAAATGAGCTAGGTCACATGCATGATACCAAGTGAAG
G
Found at i:72942068 original size:41 final size:42
Alignment explanation
Indices: 72941952--72942081 Score: 185
Period size: 42 Copynumber: 3.1 Consensus size: 42
72941942 ATGTTATAGT
72941952 ATATCGATGCCAATAG-CCCAG-CTATGGTCTTACACGAATCTC
1 ATATCGATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAATCTC
* * *
72941994 ATATCGATGCCAATGTCTCAGATATGGTGTTACACGAATCTC
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCTC
*
72942036 ATATCGATGCC-ATGTCCCAGACATGGTCTTACACAAATCTC
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCTC
72942077 ATATC
1 ATATC
72942082 CCGGTAATCC
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
41 32 0.41
42 47 0.59
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCTC
Found at i:72944436 original size:28 final size:28
Alignment explanation
Indices: 72944404--72944517 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
72944394 TACCTATATC
* *
72944404 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
72944432 TGGCCCATTAGGCCTAAATCACCTGT-ATA
1 TGGCCCATTAGGCC-CAATCACAT-TCATA
*
72944461 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
72944490 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
72944518 ATCATGCTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 25 0.34
29 47 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:72944501 original size:58 final size:57
Alignment explanation
Indices: 72944395--72944503 Score: 155
Period size: 58 Copynumber: 1.9 Consensus size: 57
72944385 AATTTCACAT
* *
72944395 ACCTATATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCTAAATC
1 ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCTAAATC
* * * *
72944452 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTATATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCC
72944504 CAGTCACATT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCTAAATC
Found at i:72946530 original size:37 final size:37
Alignment explanation
Indices: 72946480--72946559 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
72946470 CTTATTACGA
* *
72946480 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
72946517 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
72946554 GGTCTT
1 AGTCTT
72946560 TAGAGTCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:72946749 original size:47 final size:47
Alignment explanation
Indices: 72946690--72946940 Score: 337
Period size: 47 Copynumber: 5.4 Consensus size: 47
72946680 TATCACATTT
* *
72946690 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
* * *
72946735 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
* * *
72946782 ATACACGTGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
*
72946829 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
** * *
72946876 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCTCAC
*
72946924 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
72946941 TATTCAATTA
Statistics
Matches: 183, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
45 6 0.03
46 1 0.01
47 157 0.86
48 18 0.10
49 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAC
Found at i:72946979 original size:94 final size:93
Alignment explanation
Indices: 72946697--72946970 Score: 250
Period size: 94 Copynumber: 2.9 Consensus size: 93
72946687 TTTATACACT
* * * * * *
72946697 TTCACATTCATCACATCGGCCATTAGGCCTTATCTCACATACACATGCTCACATTCATCACATTG
1 TTCACATTCATCACATTGGCCATTCGGCCCTATCACACATACACATGTTCACATTCATCACATTA
* * * * * * ** *
72946762 GCCACTCGGCCTTATCACACATACACGTG
66 GACATTC-GACATACCACATATATGCATG
* * *
72946791 TTCACTTTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTG
1 TTCACATTCATCACATTGGCCATTCGGCCCTATCACACATACACATGTTCACATTCATCACATTA
* * * * *
72946856 GCCATTCGGCCTTATCTCATATATGCATG
66 GACATTC-GACATACCACATATATGCATG
* *
72946885 TTCACATTCATCACATTGGCCATTCGGCCCTATTCACACATATACACT-TTCACATTTATTCA-A
1 TTCACATTCATCACATTGGCCATTCGGCCCTA-TCACACATACACA-TGTTCACATTCA-TCACA
72946948 TTAGAC-TTC-ACATACCACATATA
63 TTAGACATTCGACATACCACATATA
72946971 CTATCATGTA
Statistics
Matches: 156, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
92 10 0.06
94 116 0.74
95 26 0.17
96 4 0.03
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (93 bp):
TTCACATTCATCACATTGGCCATTCGGCCCTATCACACATACACATGTTCACATTCATCACATTA
GACATTCGACATACCACATATATGCATG
Found at i:72946979 original size:141 final size:140
Alignment explanation
Indices: 72946690--72946971 Score: 328
Period size: 141 Copynumber: 2.0 Consensus size: 140
72946680 TATCACATTT
72946690 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCACATACACATGCTCACATTC
1 ATACACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCTCACATACACATGCTCACATTC
* * *
72946753 ATCACATTGGCCACTCGGCCTTATCACACATACACGTGTTCACTTTCATCACATTGGCCATTCGG
66 ATCACATTGGCCACTCGGCCCTATCACACATACACGTGTTCACTTTCATCACATTAGACATTC-G
* * *
72946818 CCTTATCACAC
130 ACATACCACAC
* * * ** *
72946829 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
1 ATACACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCTCACATACACATGCTCACATTC
*
72946894 ATCACATTGGCCATTCGGCCCTATTCACACATATACAC-T-TTCACATTT-ATTCA-ATTAGAC-
66 ATCACATTGGCCACTCGGCCCTA-TCACAC--ATACACGTGTTCAC-TTTCA-TCACATTAGACA
*
72946954 TTC-ACATACCACAT
126 TTCGACATACCACAC
72946968 ATAC
1 ATAC
72946972 TATCATGTAC
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
139 17 0.14
140 1 0.01
141 74 0.61
142 17 0.14
143 7 0.06
144 6 0.05
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (140 bp):
ATACACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCTCACATACACATGCTCACATTC
ATCACATTGGCCACTCGGCCCTATCACACATACACGTGTTCACTTTCATCACATTAGACATTCGA
CATACCACAC
Found at i:72951289 original size:40 final size:40
Alignment explanation
Indices: 72951232--72951809 Score: 929
Period size: 40 Copynumber: 14.6 Consensus size: 40
72951222 CCAGCATGAT
* *
72951232 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
72951272 TGCTCTTCAGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
72951312 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
72951352 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
72951392 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
72951432 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
72951472 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
72951512 TGCTCTTCGGGACTTAGCCC-GATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
72951551 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
72951590 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
72951630 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
72951670 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
72951710 TGCTCTTC-GGACTTA-CCCGGATATATCAATTGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
72951748 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
72951788 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
72951810 CATCATTCGA
Statistics
Matches: 506, Mismatches: 25, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
37 7 0.01
38 38 0.08
39 67 0.13
40 386 0.76
41 8 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:72953637 original size:37 final size:37
Alignment explanation
Indices: 72953587--72953666 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
72953577 CTTATTACGA
* *
72953587 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
72953624 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
72953661 GGTCTT
1 AGTCTT
72953667 TAGAGTCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:72953931 original size:45 final size:46
Alignment explanation
Indices: 72953796--72954040 Score: 331
Period size: 47 Copynumber: 5.3 Consensus size: 46
72953786 TATCACATTT
* * *
72953796 ATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
72953841 ATACACATGCTCACATTCATCACATTGGCC-CTCGGCCTTATCACAC
1 ATACAC-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
72953887 ATACACTGTTCAC-TTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
72953932 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATACAC-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
*
72953979 ATACA-TGTTCAC-TTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACTGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
72954024 ATATACACT-TTCACATT
1 --ATACACTGTTCACATT
72954041 TATTCAATTA
Statistics
Matches: 178, Mismatches: 12, Indels: 17
0.86 0.06 0.08
Matches are distributed among these distances:
44 40 0.22
45 44 0.25
46 27 0.15
47 64 0.36
48 3 0.02
ACGTcount: A:0.26, C:0.33, G:0.10, T:0.31
Consensus pattern (46 bp):
ATACACTGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:72953951 original size:91 final size:92
Alignment explanation
Indices: 72953796--72954040 Score: 354
Period size: 91 Copynumber: 2.7 Consensus size: 92
72953786 TATCACATTT
* * * *
72953796 ATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCACATACACATGCTCACATTCA
1 ATACACTGTTCAC-TTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
72953860 TCACATTGGCC-CTCGGCCTTATCACAC
65 TCACATTGGCCACTCGGCCTTATCACAC
72953887 ATACACTGTTCACTTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCAT
1 ATACACTGTTCACTTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCAT
* * *
72953952 CACATTGGCCATTCGGCCTTATCTCAT
66 CACATTGGCCACTCGGCCTTATCACAC
* *
72953979 ATACA-TGTTCACTTCATCACATTGGCCATTCGGCCCTATTCACACATATACACT-TTCACATT
1 ATACACTGTTCACTTCATCACATTGGCCATTCGGCCTTA-TCACACATACACA-TGTTCACATT
72954041 TATTCAATTA
Statistics
Matches: 141, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
91 97 0.69
92 43 0.30
93 1 0.01
ACGTcount: A:0.26, C:0.33, G:0.10, T:0.31
Consensus pattern (92 bp):
ATACACTGTTCACTTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCAT
CACATTGGCCACTCGGCCTTATCACAC
Found at i:72954079 original size:138 final size:136
Alignment explanation
Indices: 72953796--72954071 Score: 307
Period size: 138 Copynumber: 2.0 Consensus size: 136
72953786 TATCACATTT
72953796 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCACATACACATGCTCACATTC
1 ATACACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCT-ACATACACATGCTCACATTC
* * * * *
72953859 ATCACATTGGCCCTCGGCCTTATCACACATACACTGTTCACTTCATCACATTGGCCATTCGGCCT
65 ATCACATTGGCCCTCGGCCCTATCACACATACACTGTTCACTTCATCACATTAGACATTC-GACA
*
72953924 TATCACAC
129 TACCACAC
* * * *
72953932 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCT-CATATACATGTTCAC-TTCA
1 ATACACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCTACATACACATGCTCACATTCA
* *
72953995 TCACATTGGCCATTCGGCCCTATTCACACATATACACT-TTCACATTTATTCA-ATTAGAC-TTC
66 TCACATTGGCC-CTCGGCCCTA-TCACAC--ATACACTGTTCAC-TTCA-TCACATTAGACATTC
*
72954057 -ACATACCACAT
125 GACATACCACAC
72954068 ATAC
1 ATAC
72954072 TATCATGTAC
Statistics
Matches: 119, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
135 15 0.13
136 38 0.32
137 7 0.06
138 41 0.34
139 15 0.13
140 3 0.03
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (136 bp):
ATACACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCTACATACACATGCTCACATTCA
TCACATTGGCCCTCGGCCCTATCACACATACACTGTTCACTTCATCACATTAGACATTCGACATA
CCACAC
Found at i:72958813 original size:17 final size:17
Alignment explanation
Indices: 72958791--72958833 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
72958781 TCTAATGTTA
72958791 CAAACAATGAGTGGCAT
1 CAAACAATGAGTGGCAT
72958808 CAAACAATGAGTGGCAT
1 CAAACAATGAGTGGCAT
*
72958825 CTAACAATG
1 CAAACAATG
72958834 CATCAATGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (17 bp):
CAAACAATGAGTGGCAT
Found at i:72959691 original size:16 final size:17
Alignment explanation
Indices: 72959670--72959706 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
72959660 GCATGCACGA
72959670 TAATTCATCAAATA-CC
1 TAATTCATCAAATACCC
72959686 TAATTCATCAAATACCC
1 TAATTCATCAAATACCC
72959703 TAAT
1 TAAT
72959707 GGTACTCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.32
Consensus pattern (17 bp):
TAATTCATCAAATACCC
Found at i:72961682 original size:46 final size:44
Alignment explanation
Indices: 72961596--72961818 Score: 168
Period size: 46 Copynumber: 4.8 Consensus size: 44
72961586 GGGGTTAGGT
* * *
72961596 GCCGATGCGATGTCCC-GAACAAGGTCTTACACTGACACATCTAATA
1 GCCGATGC-ATGTCCCAG-AC-ATGTCTTACACTGGCTCATCTAATA
*
72961642 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCT--TGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-T-CATCTAAT-A
* * * * * *
72961687 GGCTGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCATT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTCATCTAATA
*
72961734 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTC-TCATAAT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATC-TAATA
*
72961779 GTCACCGATGCATGTCCCAGACATGTCTTACACTAGCTCA
1 G---CCGATGCATGTCCCAGACATGTCTTACACTGGCTCA
72961819 CACAAGTGAC
Statistics
Matches: 144, Mismatches: 17, Indels: 31
0.75 0.09 0.16
Matches are distributed among these distances:
44 14 0.10
45 13 0.09
46 71 0.49
47 28 0.19
48 18 0.12
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCATCTAATA
Found at i:72961764 original size:48 final size:48
Alignment explanation
Indices: 72961691--72961815 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 48
72961681 TCTTGAGGCT
* * * *
72961691 GATGCATGTCCTAGACATGTCTTACACTAGCACTCGTC-TCAT-T-GCC
1 GATGCATATCCCAGACATGTCTTACACTAGCACTC-TCATAATGTCACC
*
72961737 GATGCCATATCCCAGACATGGTCTTACACT-G-GCTCTCATAATGTCACC
1 GATG-CATATCCCAGACAT-GTCTTACACTAGCACTCTCATAATGTCACC
*
72961785 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATATCCCAGACATGTCTTACACTAGC
72961816 TCACACAAGT
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
45 2 0.03
46 20 0.30
47 28 0.42
48 16 0.24
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCATATCCCAGACATGTCTTACACTAGCACTCTCATAATGTCACC
Found at i:72961769 original size:94 final size:92
Alignment explanation
Indices: 72961642--72961815 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 92
72961632 ACATCTAATA
* ** ** * *
72961642 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTTGAGGCTGATGCATGTCCTAGA
1 GCCGATGCATATCCCAAACATGTCTTACACTGGCTCT-CATAATGACACCGATGCATGTCCCAGA
72961706 CATGTCTTACACTAGCACTCGTCTCATT
65 CATGTCTTACACTAGCACTCGTCTCATT
* *
72961734 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTCACCGATGCATGTCCCAG
1 GCCGATG-CATATCCCAAACAT-GTCTTACACTGGCTCTCATAATGACACCGATGCATGTCCCAG
72961799 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
72961816 TCACACAAGT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 50 0.71
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (92 bp):
GCCGATGCATATCCCAAACATGTCTTACACTGGCTCTCATAATGACACCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCGTCTCATT
Found at i:72962222 original size:28 final size:29
Alignment explanation
Indices: 72962164--72962223 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
72962154 TATCTATGGT
* *
72962164 AAAATGACCATTTTGCCCCTAGACTTTGA
1 AAAATGACCATTTTACCCCTAGACTTCGA
* *
72962193 AAAATGACCTTTTTACCCCTAGGC-TCGA
1 AAAATGACCATTTTACCCCTAGACTTCGA
72962221 AAA
1 AAA
72962224 TTGATTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (29 bp):
AAAATGACCATTTTACCCCTAGACTTCGA
Found at i:72967254 original size:40 final size:40
Alignment explanation
Indices: 72967195--72967462 Score: 457
Period size: 40 Copynumber: 6.7 Consensus size: 40
72967185 TATTTGGATG
*
72967195 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72967235 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72967275 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72967315 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72967355 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72967395 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72967435 ATAACCGGGCT-AGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
72967463 AGCAAGTAGC
Statistics
Matches: 217, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 17 0.08
40 200 0.92
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:72967328 original size:80 final size:80
Alignment explanation
Indices: 72967195--72967495 Score: 473
Period size: 80 Copynumber: 3.8 Consensus size: 80
72967185 TATTTGGATG
*
72967195 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
72967260 TTTGTGTGAGTTACT
66 TTTGTGCGAGTTACT
*
72967275 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
72967340 TTTGTGGGAGTTACT
66 TTTGTGCGAGTTACT
* * *
72967355 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
72967420 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * * *
72967435 ATAACCGGGCT-AGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
72967496 TACTTGTTTG
Statistics
Matches: 206, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
78 16 0.08
79 27 0.13
80 163 0.79
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:72974849 original size:40 final size:40
Alignment explanation
Indices: 72974704--72974982 Score: 460
Period size: 40 Copynumber: 7.1 Consensus size: 40
72974694 TATTTGGATG
*
72974704 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
72974744 ATATCCGGGCTAA-TCCTGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72974783 ATAA-CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTCCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72974821 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72974861 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72974901 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72974941 ATAA-CGGGCTAA-TCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72974979 ATAA
1 ATAA
72974983 TCTTGTGCGA
Statistics
Matches: 223, Mismatches: 13, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
38 62 0.28
39 45 0.20
40 116 0.52
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:72974857 original size:78 final size:80
Alignment explanation
Indices: 72974704--72974982 Score: 469
Period size: 78 Copynumber: 3.5 Consensus size: 80
72974694 TATTTGGATG
* * *
72974704 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAA-TCCTGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
72974768 TTTGTGTGAGTTACT
66 TTTGTGTGAGTTACT
*
72974783 ATAA-CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTCCTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
72974846 TTTGTGCGAGTTACT
66 TTTGTGTGAGTTACT
*
72974861 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
72974926 TTTGTGTGAGTTACT
66 TTTGTGTGAGTTACT
72974941 ATAA-CGGGCTAA-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
72974983 TCTTGTGCGA
Statistics
Matches: 188, Mismatches: 9, Indels: 7
0.92 0.04 0.03
Matches are distributed among these distances:
77 34 0.18
78 67 0.36
79 22 0.12
80 65 0.35
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGTGAGTTACT
Found at i:72974990 original size:20 final size:20
Alignment explanation
Indices: 72974965--72975002 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
72974955 CCGAAGGCAT
72974965 TTGTGCGAGTTACTATAATC
1 TTGTGCGAGTTACTATAATC
72974985 TTGTGCGAGTTACTATAA
1 TTGTGCGAGTTACTATAA
72975003 CCGGGCTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.39
Consensus pattern (20 bp):
TTGTGCGAGTTACTATAATC
Found at i:72975035 original size:60 final size:58
Alignment explanation
Indices: 72974927--72975042 Score: 196
Period size: 60 Copynumber: 2.0 Consensus size: 58
72974917 CCGAAGGCAT
*
72974927 TTGTGTGAGTTACTATAACGGGCTAATCCCGAAGGCATTTGTGCGAGTTACTATAATC
1 TTGTGCGAGTTACTATAACGGGCTAATCCCGAAGGCATTTGTGCGAGTTACTATAATC
*
72974985 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TTGTGCGAGTTACTATAA-CGGGCTAA-TCCCGAAGGCATTTGTGCGAGTTACTATAA
72975043 CCGGGCTAGT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
58 17 0.31
59 8 0.15
60 29 0.54
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (58 bp):
TTGTGCGAGTTACTATAACGGGCTAATCCCGAAGGCATTTGTGCGAGTTACTATAATC
Found at i:72975040 original size:40 final size:38
Alignment explanation
Indices: 72974985--72975065 Score: 135
Period size: 40 Copynumber: 2.1 Consensus size: 38
72974975 TACTATAATC
72974985 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
1 TTGTGCGAGTTACTATAACCGGGCT-AGT-CCGAAGGCAT
*
72975025 TTGTGTGAGTTACTATAACCGGGCTAGTCCGAAGGCAT
1 TTGTGCGAGTTACTATAACCGGGCTAGTCCGAAGGCAT
72975063 TTG
1 TTG
72975066 AGCAAGTAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 13 0.32
39 3 0.08
40 24 0.60
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (38 bp):
TTGTGCGAGTTACTATAACCGGGCTAGTCCGAAGGCAT
Found at i:72975057 original size:98 final size:98
Alignment explanation
Indices: 72974887--72975065 Score: 324
Period size: 98 Copynumber: 1.8 Consensus size: 98
72974877 CCGAAGGCAT
*
72974887 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACGGGCTA
1 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACGGGCTA
72974952 ATCCCGAAGGCATTTGTGCGAGTTACTATAATC
66 ATCCCGAAGGCATTTGTGCGAGTTACTATAATC
72974985 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCT
1 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA-CGGGCT
*
72975050 AGT-CCGAAGGCATTTG
65 AATCCCGAAGGCATTTG
72975066 AGCAAGTAGC
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
98 70 0.90
99 8 0.10
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (98 bp):
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACGGGCTA
ATCCCGAAGGCATTTGTGCGAGTTACTATAATC
Found at i:72979201 original size:5 final size:5
Alignment explanation
Indices: 72979191--72979236 Score: 56
Period size: 5 Copynumber: 8.6 Consensus size: 5
72979181 TTAGTCTTAT
*
72979191 TTTTA TTTTA TTTTA TTTTA TTTTTC TTTTGA TTTTA TTTTCA TTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTT-A TTTTA TTTT-A TTT
72979237 CAATTTATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
5 24 0.67
6 12 0.33
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:72979203 original size:11 final size:10
Alignment explanation
Indices: 72979191--72979236 Score: 56
Period size: 11 Copynumber: 4.3 Consensus size: 10
72979181 TTAGTCTTAT
72979191 TTTTATTTTA
1 TTTTATTTTA
72979201 TTTTATTTTA
1 TTTTATTTTA
*
72979211 TTTTTCTTTTGA
1 -TTTTATTTT-A
72979223 TTTTATTTTCA
1 TTTTATTTT-A
72979234 TTT
1 TTT
72979237 CAATTTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
10 10 0.32
11 20 0.65
12 1 0.03
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.78
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:72994784 original size:40 final size:40
Alignment explanation
Indices: 72994740--72994923 Score: 282
Period size: 40 Copynumber: 4.6 Consensus size: 40
72994730 GCTACTTACT
*
72994740 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
72994780 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
72994820 CAAATGCCTTCGGGACTTAGCTCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
72994860 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
*
72994899 CAAATGCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
72994924 TTATCATCCG
Statistics
Matches: 132, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
38 2 0.02
39 30 0.23
40 99 0.75
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:73000566 original size:37 final size:37
Alignment explanation
Indices: 73000516--73000594 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
73000506 TTATTACGAA
* * * *
73000516 GTCTTACCCGGACATAATCTCCACGCCAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACCAAGTCATCGG
**
73000553 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACCAAGTCATCGG
73000590 GTCTT
1 GTCTT
73000595 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACCAAGTCATCGG
Found at i:73000789 original size:49 final size:49
Alignment explanation
Indices: 73000712--73000869 Score: 284
Period size: 49 Copynumber: 3.2 Consensus size: 49
73000702 GCCCTTCGGG
73000712 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
73000762 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
73000811 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
73000858 ACTTTCACATTC
1 ACTTTCACATTC
73000870 TCAAAGTCAG
Statistics
Matches: 107, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
47 20 0.19
49 83 0.78
50 4 0.04
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
Found at i:73001193 original size:24 final size:23
Alignment explanation
Indices: 73001145--73001202 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
73001135 TAATCAAACA
73001145 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
73001169 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
73001193 TTATT-TTATA
1 TTATTATTATA
73001203 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:73003929 original size:40 final size:40
Alignment explanation
Indices: 73003870--73004106 Score: 323
Period size: 40 Copynumber: 5.9 Consensus size: 40
73003860 TGAATACACG
* * * * *
73003870 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** * *
73003910 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73003950 TCACTAGCA-GAAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATG-AATGCTCTTCGGGACTTAGCCCGGATACA
73003990 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
73004030 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73004070 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
73004107 TTAGTAACTC
Statistics
Matches: 176, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 174 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:73004139 original size:80 final size:79
Alignment explanation
Indices: 73003885--73004147 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 79
73003875 AGCATGATTA
* * * * * * ** * *
73003885 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTC-GGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* **
73003950 TCACTAGCAGAAATG
65 TAACTAGCACCAATG
73003965 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 CTCTTCGG-ACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* **
73004030 TCACTAGCATGAATG
65 TAACTAGCACCAATG
* **
73004045 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 CTCTTC-GGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73004110 GTAACTCGCACCAATG
65 -TAACTAGCACCAATG
* *
73004126 C-CTTCAGATCTTAGTCCGGATA
1 CTCTTCGGA-CTTAGCCCGGATA
73004148 TGGTCACTTA
Statistics
Matches: 158, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
79 4 0.03
80 140 0.89
81 14 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTCTTCGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAT
AACTAGCACCAATG
Found at i:73004139 original size:120 final size:120
Alignment explanation
Indices: 73003885--73004147 Score: 289
Period size: 120 Copynumber: 2.2 Consensus size: 120
73003875 AGCATGATTA
* * * * ** *
73003885 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTCGAGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATACA
* **
73003950 TCACTAGCAGAAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
66 TCACTAGCAGAAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCACCAATG
* * * * *
73004005 CTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 CTCTTCGAGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATACA
* * ** *
73004070 TCGCTAGCATG-AATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
66 TCACTAGCA-GAAATGCTCTTCGGAACTTAGCCCGGATACA-TAACTAGCACCAATG
*
73004126 C-CTTC-AGATCTTAGTCCGGATA
1 CTCTTCGAGA-CTTAGCCCGGATA
73004148 TGGTCACTTA
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
119 2 0.02
120 105 0.88
121 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CTCTTCGAGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATACA
TCACTAGCAGAAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCACCAATG
Found at i:73004530 original size:29 final size:29
Alignment explanation
Indices: 73004491--73004569 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
73004481 CTTAATAATC
*
73004491 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73004521 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73004550 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73004570 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73004616 original size:43 final size:43
Alignment explanation
Indices: 73004551--73004653 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
73004541 TGCATTTCAA
*
73004551 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCAAATCTCACAACCGTGAACACTTATT
73004594 GCCCGCACACTTAGTGCAAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCAAATCTCACAACCGTGAACACTTATT
*
73004637 GCCCGCTCACTTAGTGC
1 GCCCGCACACTTAGTGC
73004654 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCAAATCTCACAACCGTGAACACTTATT
Found at i:73006540 original size:37 final size:37
Alignment explanation
Indices: 73006490--73006568 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73006480 TTATTACGAA
* * *
73006490 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
73006527 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
73006564 GTCTT
1 GTCTT
73006569 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:73006827 original size:49 final size:49
Alignment explanation
Indices: 73006686--73006848 Score: 249
Period size: 54 Copynumber: 3.2 Consensus size: 49
73006676 GCCCTTCGGG
73006686 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
73006736 ACTTTCACATTCATCACATCACACCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACAT-----CGGCCATTAGGCCCTATCACATATATATAC
*
73006790 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
73006837 ACTTTCACATTC
1 ACTTTCACATTC
73006849 TCAAAGTAAG
Statistics
Matches: 107, Mismatches: 1, Indels: 13
0.88 0.01 0.11
Matches are distributed among these distances:
47 20 0.19
49 34 0.32
50 4 0.04
54 49 0.46
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.31
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
Found at i:73007167 original size:24 final size:23
Alignment explanation
Indices: 73007119--73007176 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
73007109 TAATCAAACA
73007119 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
73007143 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
73007167 TTATT-TTATA
1 TTATTATTATA
73007177 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:73016203 original size:15 final size:15
Alignment explanation
Indices: 73016183--73016211 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73016173 TCTTTTTAGC
73016183 TTGAAAATTGATAGA
1 TTGAAAATTGATAGA
73016198 TTGAAAATTGATAG
1 TTGAAAATTGATAG
73016212 TTTAGTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (15 bp):
TTGAAAATTGATAGA
Found at i:73019400 original size:29 final size:29
Alignment explanation
Indices: 73019367--73019440 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
73019357 GTTGTGAGAT
* *
73019367 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* * *
73019396 TGGCACTAACTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
73019425 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73019441 CGGTTGATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 6 0.16
29 32 0.84
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:73025542 original size:7 final size:8
Alignment explanation
Indices: 73025517--73025544 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
73025507 AATAGGGGTT
73025517 AAATTGAA
1 AAATTGAA
73025525 AAATTGAA
1 AAATTGAA
73025533 AAATTGAA
1 AAATTGAA
73025541 AAAT
1 AAAT
73025545 ATTCATGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (8 bp):
AAATTGAA
Found at i:73026201 original size:7 final size:7
Alignment explanation
Indices: 73026189--73026217 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
73026179 AGTGAGCATT
73026189 ATATGAG
1 ATATGAG
73026196 ATATGAG
1 ATATGAG
73026203 ATATGAG
1 ATATGAG
73026210 AT-TGAG
1 ATATGAG
73026216 AT
1 AT
73026218 GGCTTCGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (7 bp):
ATATGAG
Found at i:73026967 original size:11 final size:11
Alignment explanation
Indices: 73026951--73026977 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
73026941 TTATTATTCA
73026951 ATATTAAACCT
1 ATATTAAACCT
73026962 ATATTAAACCT
1 ATATTAAACCT
73026973 ATATT
1 ATATT
73026978 TCTATTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (11 bp):
ATATTAAACCT
Found at i:73027205 original size:18 final size:19
Alignment explanation
Indices: 73027182--73027225 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
73027172 CAATCAATTC
* *
73027182 ATTTATACATATTTAA-TA
1 ATTTATACATATCTAACGA
*
73027200 ATTTATATATATCTAACGA
1 ATTTATACATATCTAACGA
73027219 ATTTATA
1 ATTTATA
73027226 TTACCATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTTATACATATCTAACGA
Found at i:73035144 original size:11 final size:11
Alignment explanation
Indices: 73035128--73035154 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
73035118 TTATTATTCA
73035128 ATATTAAACCT
1 ATATTAAACCT
73035139 ATATTAAACCT
1 ATATTAAACCT
73035150 ATATT
1 ATATT
73035155 TCTATTCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (11 bp):
ATATTAAACCT
Found at i:73039874 original size:28 final size:27
Alignment explanation
Indices: 73039811--73039962 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
73039801 ATATTAAGTC
* *
73039811 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
73039838 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
73039866 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
73039893 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
73039921 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
73039948 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73039963 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:73039895 original size:55 final size:55
Alignment explanation
Indices: 73039811--73039987 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
73039801 ATATTAAGTC
* * *
73039811 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
73039866 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
73039921 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
73039977 CGCACACTTAG
1 CGCACACTTAG
73039988 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:73040459 original size:12 final size:12
Alignment explanation
Indices: 73040442--73040467 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73040432 ATGGCATACT
73040442 TATGTATATATA
1 TATGTATATATA
73040454 TATGTATATATA
1 TATGTATATATA
73040466 TA
1 TA
73040468 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:73047391 original size:24 final size:24
Alignment explanation
Indices: 73047357--73047478 Score: 145
Period size: 24 Copynumber: 5.0 Consensus size: 24
73047347 CAACCGAACA
* *
73047357 TTTTCATCTCAATTGAGCTTACCG
1 TTTTCAGCTCAATAGAGCTTACCG
*
73047381 TTTTCAGCTCAATAGAGCTTACCA
1 TTTTCAGCTCAATAGAGCTTACCG
* *
73047405 TTTTCATCTCAATTGAGCTTACCG
1 TTTTCAGCTCAATAGAGCTTACCG
**
73047429 TTTTCAGCTCAATAGAGCTTATTG
1 TTTTCAGCTCAATAGAGCTTACCG
**
73047453 TTTATCAGCTCAGGAGGAGCTTACCG
1 TTT-TCAGCTCAATA-GAGCTTACCG
73047479 ACCATGCCTC
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
24 65 0.79
25 9 0.11
26 8 0.10
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (24 bp):
TTTTCAGCTCAATAGAGCTTACCG
Found at i:73047426 original size:48 final size:48
Alignment explanation
Indices: 73047355--73047449 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
73047345 CCCAACCGAA
73047355 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTAC
1 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTAC
73047403 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTA
1 CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTA
73047450 TTGTTTATCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (48 bp):
CATTTTCATCTCAATTGAGCTTACCGTTTTCAGCTCAATAGAGCTTAC
Found at i:73052372 original size:27 final size:26
Alignment explanation
Indices: 73052342--73052456 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
73052332 ATGGAGGAAG
*
73052342 TGTTTTGGTGGCTATGCCACAACTATC
1 TGTTCTGGTGGCTATGCCACAA-TATC
73052369 TGTTTCTGGTGGCTATGCCACAAATATC
1 TG-TTCTGGTGGCTATGCCAC-AATATC
*
73052397 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * *
73052423 TGTATCTGGTGACTTTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
73052450 TGTTCTG
1 TGTTCTG
73052457 ACAGCCATGC
Statistics
Matches: 80, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
26 13 0.16
27 42 0.52
28 23 0.29
29 2 0.03
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:73067838 original size:40 final size:39
Alignment explanation
Indices: 73067781--73068003 Score: 293
Period size: 40 Copynumber: 5.6 Consensus size: 39
73067771 CGGATGATAA
* * *
73067781 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
73067821 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
73067861 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
*
73067901 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
73067941 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
73067981 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
73068004 CGAGTAAGTA
Statistics
Matches: 166, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 166 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:73067994 original size:120 final size:120
Alignment explanation
Indices: 73067781--73068003 Score: 342
Period size: 120 Copynumber: 1.9 Consensus size: 120
73067771 CGGATGATAA
* * *
73067781 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* *
73067846 TGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACCT
66 CGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACCT
*
73067901 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* *
73067964 GGCGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATT
64 GGCGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATT
73068004 CGAGTAAGTA
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
119 1 0.01
120 91 0.98
121 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
CGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACCT
Found at i:73070013 original size:27 final size:26
Alignment explanation
Indices: 73069943--73070055 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 26
73069933 GGAGGAAGCA
73069943 TTCTGGTGGCTATGCCACAACTATCTG
1 TTCTGGTGGCTATGCCACAA-TATCTG
73069970 TTTCTGGTGGCTATGCCACAAATATCTG
1 -TTCTGGTGGCTATGCCAC-AATATCTG
*
73069998 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* *
73070024 TATCTGGTGACCT-TGTCACAATATCTG
1 T-TCTGGTG-GCTATGCCACAATATCTG
73070051 TTCTG
1 TTCTG
73070056 ACAGCCATGC
Statistics
Matches: 79, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
26 13 0.16
27 38 0.48
28 26 0.33
29 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:73075604 original size:29 final size:27
Alignment explanation
Indices: 73075586--73075655 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
73075576 ATATTAAGTC
73075586 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
73075613 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
73075641 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
73075656 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:73075649 original size:28 final size:28
Alignment explanation
Indices: 73075586--73075682 Score: 133
Period size: 28 Copynumber: 3.5 Consensus size: 28
73075576 ATATTAAGTC
*
73075586 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
73075613 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73075641 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
73075670 CGCACACTTAGTG
1 CGCACACTTAGTG
73075683 TCAATCTCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.35
28 23 0.37
29 18 0.29
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73083641 original size:29 final size:27
Alignment explanation
Indices: 73083623--73083692 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
73083613 ATATTAAGTC
73083623 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
73083650 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
73083678 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
73083693 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:73083686 original size:28 final size:28
Alignment explanation
Indices: 73083623--73083720 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
73083613 ATATTAAGTC
*
73083623 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
73083650 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73083678 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
73083707 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73083721 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73100594 original size:20 final size:18
Alignment explanation
Indices: 73100568--73100614 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 18
73100558 AATAGTCCAT
73100568 CATGAACTTAATGATTAAGTA
1 CATGAACTTAA--ATTAAG-A
*
73100589 -ATGAACCTAAATTAAGA
1 CATGAACTTAAATTAAGA
73100606 CATGAACTT
1 CATGAACTT
73100615 CTAGAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 1 0.04
18 13 0.57
20 9 0.39
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.30
Consensus pattern (18 bp):
CATGAACTTAAATTAAGA
Found at i:73101360 original size:20 final size:20
Alignment explanation
Indices: 73101313--73101360 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
73101303 AGTAAGCTCG
*
73101313 GTTGAGATCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
** * *
73101333 AATAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
73101353 GTTGAGCT
1 GTTGAGCT
73101361 GGACGGTGCT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:73106449 original size:42 final size:41
Alignment explanation
Indices: 73106290--73106449 Score: 131
Period size: 42 Copynumber: 3.8 Consensus size: 41
73106280 ATAGCAATGT
* * * * * *
73106290 CATATCCCAGAAATGGTGTTACATGGGATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACA-CGAAACTCATAACGATGC
* * * ** *
73106332 CAATAGCCCAGCTATGGTCTTGCACGATTCTCATACCGATGC
1 C-ATATCCCAGATATGGTCTTACACGAAACTCATAACGATGC
* * * * *
73106374 CATGTCCTATACATGGTCTTACATGAAATCTCATAACGATGC
1 CATATCCCAGATATGGTCTTACACGAAA-CTCATAACGATGC
73106416 CATATCCCAGATATGGTCTTACACGTAAACTCAT
1 CATATCCCAGATATGGTCTTACACG-AAACTCAT
73106450 TACCCTAATG
Statistics
Matches: 90, Mismatches: 25, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
41 17 0.19
42 53 0.59
43 20 0.22
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (41 bp):
CATATCCCAGATATGGTCTTACACGAAACTCATAACGATGC
Found at i:73107452 original size:27 final size:27
Alignment explanation
Indices: 73107383--73107467 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
73107373 CTGCCAGGAA
*
73107383 CAGTAAATGTGGCAAAGCCACCAGTAT
1 CAGTAAATGTGGCATAGCCACCAGTAT
** *
73107410 CAGTATTTGTGGCATAGCCACTAGTAAT
1 CAGTAAATGTGGCATAGCCACCAGT-AT
* * *
73107438 -AGTAAATGTGACATAGTCACCAATAT
1 CAGTAAATGTGGCATAGCCACCAGTAT
73107464 -AGTA
1 CAGTA
73107468 CTTCCTTCAT
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
26 6 0.13
27 39 0.83
28 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
CAGTAAATGTGGCATAGCCACCAGTAT
Found at i:73107634 original size:27 final size:27
Alignment explanation
Indices: 73107604--73107665 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
73107594 GGCATAATCA
*
73107604 TCATTTTTCCATATAGGGGCATTATGG
1 TCATTTTTCCATACAGGGGCATTATGG
* * * *
73107631 TCATTTTACCCTACAGGGGTATTTTGG
1 TCATTTTTCCATACAGGGGCATTATGG
73107658 TCATTTTT
1 TCATTTTT
73107666 TCTATTTCGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.45
Consensus pattern (27 bp):
TCATTTTTCCATACAGGGGCATTATGG
Found at i:73109944 original size:46 final size:45
Alignment explanation
Indices: 73109892--73110066 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
73109882 TGGTTGAGCA
73109892 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* ** * *
73109938 TTCGAACTCGTTGAGTTGAGTCCGAGTT-TGTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
* *
73109983 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
*
73110031 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
73110067 GGCGGGTTAC
Statistics
Matches: 105, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 7 0.07
46 56 0.53
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:73110048 original size:93 final size:93
Alignment explanation
Indices: 73109889--73110058 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
73109879 GGATGGTTGA
* *
73109889 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCTCGAACTCGTTGAGT
73109954 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* * *
73109982 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC-CTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCTC-GAACTCGTTGAG
73110046 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
73110059 CACTTAGGGG
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCTCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Done.