Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 224 of 356
Found at i:73421829 original size:49 final size:47
Alignment explanation
Indices: 73421702--73421919 Score: 373
Period size: 49 Copynumber: 4.6 Consensus size: 47
73421692 CATGGCCTTA
*
73421702 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73421749 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73421796 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73421845 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73421894 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
73421920 CACAATTATC
Statistics
Matches: 166, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
47 72 0.43
49 94 0.57
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73424896 original size:49 final size:47
Alignment explanation
Indices: 73424676--73424932 Score: 352
Period size: 47 Copynumber: 5.4 Consensus size: 47
73424666 CCCTTCGGGA
* *
73424676 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
73424723 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
73424770 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
73424817 CTTATGACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
73424864 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
73424913 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
73424933 GTACATCAAT
Statistics
Matches: 188, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 145 0.77
49 43 0.23
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:73430835 original size:27 final size:26
Alignment explanation
Indices: 73430786--73430841 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
73430776 AGCATGACTG
* *
73430786 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTATGACAGAGCCA
**
73430812 CCAGATACAGATATTATGGTAGAGCCA
1 CCAGA-ACAGATATTATGACAGAGCCA
73430839 CCA
1 CCA
73430842 AAAACAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTATGACAGAGCCA
Found at i:73431006 original size:26 final size:27
Alignment explanation
Indices: 73430977--73431038 Score: 101
Period size: 26 Copynumber: 2.3 Consensus size: 27
73430967 AAATTAACCA
73430977 TAGGGGTATAATGGTAATTTTGCAT-C-
1 TAGGGGTATAATGGTAATTTT-CATACT
73431003 TAGGGGTATAATGGTAATTTTCATACT
1 TAGGGGTATAATGGTAATTTTCATACT
73431030 TAGGGGTAT
1 TAGGGGTAT
73431039 TTTAGTAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 3 0.09
26 22 0.65
27 9 0.26
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.39
Consensus pattern (27 bp):
TAGGGGTATAATGGTAATTTTCATACT
Found at i:73437104 original size:47 final size:47
Alignment explanation
Indices: 73437053--73437489 Score: 631
Period size: 47 Copynumber: 9.1 Consensus size: 47
73437043 TTAGGATTTT
* * *
73437053 ATGTGATGAATGTGTACATGCGTATGTGTGATAAGGCCGAATGGCCC
1 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
73437100 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
* *
73437147 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGTGTATGTGTGATAAGGCCGAATGGCCA
*
73437198 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
* * *
73437245 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGTGTATGTGTGATAAGGCCGAATGGCCA
73437296 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
*
73437343 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
* ** * *
73437390 ATGTGATGAATGTGAAGATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
* * * *
73437437 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
73437484 ATGTGA
1 ATGTGA
73437490 AATGTGTATG
Statistics
Matches: 357, Mismatches: 25, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
47 267 0.75
48 1 0.00
49 2 0.01
50 1 0.00
51 86 0.24
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
Found at i:73437191 original size:98 final size:96
Alignment explanation
Indices: 73437075--73437489 Score: 640
Period size: 98 Copynumber: 4.3 Consensus size: 96
73437065 TGTACATGCG
* *
73437075 TATGTGTGATAAGGCCGAATGGCCCATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
73437140 ATGGCCAATGTGATGAATGTGAACCCGTATATA
66 ATGGCCAATGTGATGAATGTGAA--CGTATATA
73437173 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
73437238 ATGGCCAATGTGATGAATGTGAACCTGTATATA
66 ATGGCCAATGTGATGAATGTGAA-C-GTATATA
* *
73437271 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
***
73437336 ATGGCCAATGTGATGAATGTGAAC--ATGCG
66 ATGGCCAATGTGATGAATGTGAACGTATATA
* * * *
73437365 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGATGCATATATGAGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
* *
73437430 ATGGCCAATGTGATGAATGTGAACATGTATA
66 ATGGCCAATGTGATGAATGTGAACGTATATA
*
73437461 TATGTG-G-TAAGGCCGAATGGCTAATGTGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGA
73437490 AATGTGTATG
Statistics
Matches: 296, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
94 106 0.36
95 1 0.00
96 7 0.02
97 3 0.01
98 179 0.60
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (96 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACGTATATA
Found at i:73437202 original size:24 final size:24
Alignment explanation
Indices: 73437174--73437249 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
73437164 CCGTATATAT
73437174 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
73437198 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
73437221 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
73437245 ATGTG
1 ATGTG
73437250 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:73437235 original size:145 final size:142
Alignment explanation
Indices: 73437053--73437489 Score: 664
Period size: 145 Copynumber: 3.0 Consensus size: 142
73437043 TTAGGATTTT
* *
73437053 ATGTGATGAATGTGTACATGCGTATGTGTGATAAGGCCGAATGGCCCATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
73437118 TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGAT
66 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--C-TATATATATGTGTGAT
73437183 AAGGCCGAATGGCCA
128 AAGGCCGAATGGCCA
73437198 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
* * * *
73437263 TGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-ATGTGTATGTGTGA
65 ---ATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTATATATATGTGTGA
73437327 TAAGGCCGAATGGCCA
127 TAAGGCCGAATGGCCA
*
73437343 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
73437408 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTG-G-TAA
66 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-TATATATATGTGTGATAA
*
73437471 GGCCGAATGGCTA
130 GGCCGAATGGCCA
73437484 ATGTGA
1 ATGTGA
73437490 AATGTGTATG
Statistics
Matches: 269, Mismatches: 17, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
141 63 0.23
142 1 0.00
143 8 0.03
145 152 0.57
146 1 0.00
147 1 0.00
149 43 0.16
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (142 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTATATATATGTGTGATAAG
GCCGAATGGCCA
Found at i:73437596 original size:46 final size:46
Alignment explanation
Indices: 73437460--73437596 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
73437450 GAACATGTAT
* *
73437460 ATATGTGGTAAGGCCGAATGGCTAATGTGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* *
73437506 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * *
73437552 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATG
73437597 TGTATATATA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
Found at i:73437848 original size:37 final size:37
Alignment explanation
Indices: 73437740--73437848 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
73437730 GGAAATATAT
*
73437740 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
73437777 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
73437814 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
73437849 CGCCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:73439868 original size:18 final size:20
Alignment explanation
Indices: 73439832--73439872 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
73439822 AGTTGTAAGT
73439832 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
73439852 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
73439871 AT
1 AT
73439873 GATAGAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:73440374 original size:50 final size:50
Alignment explanation
Indices: 73440316--73440558 Score: 270
Period size: 50 Copynumber: 4.8 Consensus size: 50
73440306 TTAACTTCGA
* *
73440316 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
* * * * *
73440366 TCATGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
* * * ** * * ** *
73440416 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTTTAG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAAG
* * *
73440467 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
* * *
73440517 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
73440559 GAGCTTCGGT
Statistics
Matches: 153, Mismatches: 39, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
50 117 0.76
51 36 0.24
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAAG
Found at i:73440497 original size:101 final size:101
Alignment explanation
Indices: 73440364--73440555 Score: 294
Period size: 101 Copynumber: 1.9 Consensus size: 101
73440354 CAGATGGTTA
* * * *
73440364 AGTCATGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGT
73440429 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTT
66 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTT
* * * * *
73440465 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAATTCACATGTGTAGT
1 AGTCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGT
*
73440530 ACTAAGTGCAGGCTACTATGCGTACC
66 ACTAAGTGCAGGCTACTATGCATACC
73440556 AGAGAGCTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 81 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
AGTCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGT
ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTT
Found at i:73440526 original size:151 final size:150
Alignment explanation
Indices: 73440240--73440558 Score: 505
Period size: 151 Copynumber: 2.1 Consensus size: 150
73440230 CTTGTATAGT
* *
73440240 GCTACTAAGTGTACCAGATCGACAGGTCGCATGTGTAGTAGTAAGTGCAGGCTACTATGCGTACC
1 GCTACTAAGTGTACCAGATCGACAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACC
* *
73440305 CTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCAT
66 CTTAACTTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCAC
*
73440370 GTGTGTAGCACTAAGTGCAG
131 ATGTGTAGCACTAAGTGCAG
* * *
73440390 GCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACC
1 GCTACTAAGTGTACCAGATCGACAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACC
*
73440455 CGTTAACTTTAG-TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAATTC
66 C-TTAAC-TTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTC
*
73440519 ACATGTGTAGTACTAAGTGCAG
129 ACATGTGTAGCACTAAGTGCAG
* *
73440541 GCTACTATGCGTACCAGA
1 GCTACTAAGTGTACCAGA
73440559 GAGCTTCGGT
Statistics
Matches: 155, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
150 61 0.39
151 91 0.59
152 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (150 bp):
GCTACTAAGTGTACCAGATCGACAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACC
CTTAACTTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCAC
ATGTGTAGCACTAAGTGCAG
Found at i:73440592 original size:151 final size:150
Alignment explanation
Indices: 73440287--73440592 Score: 391
Period size: 151 Copynumber: 2.0 Consensus size: 150
73440277 GTAGTAAGTG
* *
73440287 CAGGCTACTATGCGTACCCTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGT
1 CAGGCTACTATGCATACCCTTAACTTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGT
** * **
73440352 ATCAGATGGTTAAGTCATGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
66 ATCAGATGGTTAAGTCACATGTGTAGCACTAAGTGCAGGCTACTACGCGTACCAGAGAGATAGGT
* * * **
73440417 CGCATGTGTAGTACTAAGTG
131 CACAAGGGTAGTACTAAGCA
73440437 CAGGCTACTATGCATACCCGTTAACTTTAG-TCACGTGTGTAGTACTAAGTGTAGGCTACTACGT
1 CAGGCTACTATGCATACCC-TTAAC-TTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGT
* * * * *
73440501 GTATCAGATGGTTAATTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTC
64 GTATCAGATGGTTAAGTCACATGTGTAGCACTAAGTGCAGGCTACTACGCGTACCAGAGAG-ATA
* * *
73440566 GGTTACAAGGGTGGTA-TATGCA
128 GGTCACAAGGGTAGTACTAAGCA
73440588 CAGGC
1 CAGGC
73440593 CACCGGGTAT
Statistics
Matches: 133, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
150 18 0.14
151 100 0.75
152 15 0.11
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (150 bp):
CAGGCTACTATGCATACCCTTAACTTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGT
ATCAGATGGTTAAGTCACATGTGTAGCACTAAGTGCAGGCTACTACGCGTACCAGAGAGATAGGT
CACAAGGGTAGTACTAAGCA
Found at i:73440780 original size:16 final size:16
Alignment explanation
Indices: 73440759--73440790 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73440749 AGAATAGAGT
73440759 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
73440775 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
73440791 TAAAACTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:73444285 original size:28 final size:28
Alignment explanation
Indices: 73444219--73444347 Score: 177
Period size: 28 Copynumber: 4.5 Consensus size: 28
73444209 CATGAGATTG
* * **
73444219 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
73444248 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73444276 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
73444305 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73444333 ACACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
73444348 CTTACTATAT
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 46 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73444308 original size:57 final size:57
Alignment explanation
Indices: 73444219--73444347 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
73444209 CATGAGATTG
*
73444219 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
73444276 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
73444333 ACACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
73444348 CTTACTATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 62 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:73452298 original size:28 final size:28
Alignment explanation
Indices: 73452232--73452359 Score: 157
Period size: 28 Copynumber: 4.5 Consensus size: 28
73452222 CATGAGATTG
* * **
73452232 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
73452261 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
73452289 GCATTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
*
73452318 GCACTAAGTGTGCGAGTTTGAGTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73452346 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73452360 GACTTACTAT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 44 0.51
29 42 0.49
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73474903 original size:40 final size:40
Alignment explanation
Indices: 73474701--73474889 Score: 297
Period size: 40 Copynumber: 4.7 Consensus size: 40
73474691 ATTCGGATTG
*
73474701 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
73474741 ATAACCAGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73474781 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73474821 ATAACCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73474861 ATAACCGAGCTAAGTCCCGACGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73474890 AGCTAGTAGC
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73478785 original size:20 final size:20
Alignment explanation
Indices: 73478762--73478800 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
73478752 TTTCCACTCT
73478762 TTTTCTT-TTCTTTCTTTTTA
1 TTTTCTTCTT-TTTCTTTTTA
*
73478782 TTTTGTTCTTTTTCTTTTT
1 TTTTCTTCTTTTTCTTTTT
73478801 CTCTTCCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTCTTCTTTTTCTTTTTA
Found at i:73478800 original size:15 final size:14
Alignment explanation
Indices: 73478759--73478805 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
73478749 CTTTTTCCAC
73478759 TCTTTTTCTTTTCTT
1 TCTTTTTCTTTT-TT
* *
73478774 TCTTTTTATTTTGT
1 TCTTTTTCTTTTTT
*
73478788 TCTTTTTCTTTTTC
1 TCTTTTTCTTTTTT
73478802 TCTT
1 TCTT
73478806 CCAATGGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (14 bp):
TCTTTTTCTTTTTT
Found at i:73480867 original size:19 final size:21
Alignment explanation
Indices: 73480839--73480877 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
73480829 TTCCAATCAC
73480839 TTTTTGTTTG-AATTTTTTTA
1 TTTTTGTTTGAAATTTTTTTA
73480859 TTTTT-TTTGAAATTTTTTT
1 TTTTTGTTTGAAATTTTTTT
73480878 TCAACTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (21 bp):
TTTTTGTTTGAAATTTTTTTA
Found at i:73484551 original size:23 final size:24
Alignment explanation
Indices: 73484523--73484578 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
73484513 AGCCCAAATA
* *
73484523 AGCTTCCCGATA-GGCTCTTTGTG
1 AGCTTCCCGAAATGGCTCTGTGTG
73484546 AGCTTCCCGAAATGGCTCTGTGTG
1 AGCTTCCCGAAATGGCTCTGTGTG
73484570 AGCTTCCCG
1 AGCTTCCCG
73484579 TTACAAGGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.14, C:0.29, G:0.27, T:0.30
Consensus pattern (24 bp):
AGCTTCCCGAAATGGCTCTGTGTG
Found at i:73490204 original size:80 final size:79
Alignment explanation
Indices: 73490067--73490291 Score: 197
Period size: 80 Copynumber: 2.8 Consensus size: 79
73490057 TTGAATGCTG
* * * * * * *
73490067 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
73490130 TTGTGCGAG-AAACAAA
63 TTGTGCGAGTAAACAAA
* * *
73490146 TTCCGGGTTAAG-CCCTGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 -TCCGGGTTAAGTCCC-GAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCAT
* * **
73490210 TCGTGCGAGTTATTAAA
63 TTGTGCGAGTAAACAAA
* * * * *
73490227 TCCGGGTTATGTCCCGAATGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
73490292 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
79 42 0.35
80 60 0.50
81 17 0.14
82 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTAAACAAA
Found at i:73490271 original size:39 final size:39
Alignment explanation
Indices: 73490120--73490289 Score: 182
Period size: 40 Copynumber: 4.3 Consensus size: 39
73490110 GGACTAAGAT
** *
73490120 CCGAAGGCATTTGTGCGAGAAAC-AAATTCCGGGTTAAG-C
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
73490159 CCTGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CC-GAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
73490200 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * * *
73490240 CCGAATGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
73490279 CCGAAGGCATT
1 CCGAAGGCATT
73490290 TGAACGAGGA
Statistics
Matches: 114, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 39 0.34
40 68 0.60
41 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:73504109 original size:27 final size:26
Alignment explanation
Indices: 73504079--73504134 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 26
73504069 ACATAGCTTA
73504079 AATGTGTCTAGTTTAG-GACATCAATTT
1 AATGTGTCTAGTTTAGAGACA--AATTT
73504106 AATGTGTCTAGTTTAGAGACAAATTT
1 AATGTGTCTAGTTTAGAGACAAATTT
73504132 AAT
1 AAT
73504135 TAGTTACAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 8 0.29
27 16 0.57
28 4 0.14
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (26 bp):
AATGTGTCTAGTTTAGAGACAAATTT
Found at i:73508510 original size:64 final size:64
Alignment explanation
Indices: 73508429--73508612 Score: 174
Period size: 67 Copynumber: 2.8 Consensus size: 64
73508419 AGACATTATG
* *
73508429 ATGTAGCTAGGTCGCATGGGTGATAATATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATAATATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * ** * *
73508493 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GAT-AATATG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73508558 AA
63 AA
* * * * * **
73508560 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTCTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATAATATGTGTACACCATGTAGACAAGAGAGC
73508613 CAAAATTATG
Statistics
Matches: 94, Mismatches: 22, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
63 19 0.20
64 21 0.22
65 4 0.04
66 17 0.18
67 31 0.33
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATAATATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73511719 original size:26 final size:26
Alignment explanation
Indices: 73511683--73511736 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
73511673 GGAGAAGGAA
73511683 AAGTTCTTTCTATCTTGTTAGTTTCC
1 AAGTTCTTTCTATCTTGTTAGTTTCC
73511709 AAGTTCTTTCTATCTTGTTAGTTTCC
1 AAGTTCTTTCTATCTTGTTAGTTTCC
73511735 AA
1 AA
73511737 CAAGCATTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.52
Consensus pattern (26 bp):
AAGTTCTTTCTATCTTGTTAGTTTCC
Found at i:73511918 original size:15 final size:14
Alignment explanation
Indices: 73511897--73511938 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
73511887 ATTTTTTCGA
73511897 CTCTTTTTC-TTTT
1 CTCTTTTTCTTTTT
*
73511910 CATTCTTTTTATTTTT
1 C--TCTTTTTCTTTTT
73511926 CTCTTTTTCTTTT
1 CTCTTTTTCTTTT
73511939 GATCTCTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 11 0.46
15 7 0.29
16 5 0.21
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (14 bp):
CTCTTTTTCTTTTT
Found at i:73522860 original size:49 final size:49
Alignment explanation
Indices: 73522804--73523228 Score: 462
Period size: 47 Copynumber: 8.6 Consensus size: 49
73522794 TATTTGAATA
*
73522804 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
73522853 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * * *
73522902 AAATGT-ATAA-TGTGATGAATGTGAAAGTGTATATATG-TGATAAGGCCGAATGGCCATGTGAT
1 -AATGTGA-AAGTGT-AT--ATAT--ATGTG-ATA-AGGCCGA-ATGGCC-----G--ATGTGAT
73522964 G
49 G
73522965 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
73523014 AATGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
73523061 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
73523108 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * * *
73523155 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
73523202 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
73523229 TCCCGAAGGG
Statistics
Matches: 328, Mismatches: 24, Indels: 50
0.82 0.06 0.12
Matches are distributed among these distances:
45 18 0.05
46 7 0.02
47 133 0.41
48 8 0.02
49 93 0.28
50 9 0.03
51 1 0.00
52 3 0.01
54 4 0.01
55 4 0.01
56 14 0.04
57 5 0.02
58 4 0.01
60 3 0.01
61 1 0.00
62 9 0.03
63 12 0.04
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:73522983 original size:112 final size:114
Alignment explanation
Indices: 73522804--73523015 Score: 392
Period size: 112 Copynumber: 1.9 Consensus size: 114
73522794 TATTTGAATA
73522804 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
73522869 TATATGTGATAAGGCCTAATGGCCGATGTGATGAAATGTATAATGTGATG
65 TATATGTGATAAGGCCGAATGGCCGATGTGATGAAATGTATAATGTGATG
73522919 AATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
73522982 ATATGTGATAAGGCCGAATGGCCGATGTGATGAA
66 ATATGTGATAAGGCCGAATGGCCGATGTGATGAA
73523016 TGTGAAAGTG
Statistics
Matches: 96, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
112 58 0.60
113 26 0.27
115 12 0.12
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (114 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCGAATGGCCGATGTGATGAAATGTATAATGTGATG
Found at i:73522989 original size:64 final size:65
Alignment explanation
Indices: 73522844--73522966 Score: 214
Period size: 64 Copynumber: 1.9 Consensus size: 65
73522834 CCGAATGGCC
*
73522844 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAATGTA
1 AATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCGATGTGATGAAATGTA
73522909 T
65 T
73522910 AATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCC-ATGTGATGAA
1 AATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCGATGTGATGAA
73522967 TGTGAAAGTG
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
63 10 0.18
64 25 0.45
66 21 0.38
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (65 bp):
AATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCGATGTGATGAAATGTAT
Found at i:73523057 original size:47 final size:47
Alignment explanation
Indices: 73522911--73523228 Score: 489
Period size: 47 Copynumber: 6.7 Consensus size: 47
73522901 GAAATGTATA
73522911 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
73522957 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
73523006 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCC-
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCG
*
73523053 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
*
73523100 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
* * * * *
73523147 ATGTGGTGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
* * *
73523194 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73523229 TCCCGAAGGG
Statistics
Matches: 255, Mismatches: 12, Indels: 9
0.92 0.04 0.03
Matches are distributed among these distances:
45 18 0.07
46 27 0.11
47 137 0.54
48 33 0.13
49 40 0.16
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCG
Found at i:73525619 original size:24 final size:24
Alignment explanation
Indices: 73525569--73525697 Score: 190
Period size: 24 Copynumber: 5.4 Consensus size: 24
73525559 CTAGAGGCCT
*
73525569 AGCCTCTTTTAATAATTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
73525593 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73525617 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
73525641 GGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
*
73525666 AGCCC-TTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73525689 AGCCCTTTT
1 AGCCCTTTT
73525698 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
23 36 0.38
24 41 0.43
25 19 0.20
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:73525776 original size:20 final size:20
Alignment explanation
Indices: 73525750--73525813 Score: 92
Period size: 20 Copynumber: 3.2 Consensus size: 20
73525740 TGAATACATT
73525750 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
* *
73525770 CTGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
* *
73525790 ATGTGCATACCATACATACC
1 ATGTGCATATCATACATATC
73525810 ATGT
1 ATGT
73525814 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:73528342 original size:19 final size:18
Alignment explanation
Indices: 73528305--73528348 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73528295 ATACTTACAG
73528305 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
73528322 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
73528341 TACTAATT
1 TAATAATT
73528349 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:73530343 original size:7 final size:7
Alignment explanation
Indices: 73530331--73530358 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
73530321 CCGTAGCCCT
73530331 TTTCATA
1 TTTCATA
73530338 TTTCATA
1 TTTCATA
73530345 TTTCATA
1 TTTCATA
73530352 TTTCATA
1 TTTCATA
73530359 ACATTGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:73530620 original size:23 final size:23
Alignment explanation
Indices: 73530571--73530640 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
73530561 ACTTGATCAT
**
73530571 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTA
73530596 ATAACTGGGGCAAAGCCCTTTTA
1 ATAACTGGGGCAAAGCCCTTTTA
73530619 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCA-AAGCCCTTTT
73530641 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.12
23 22 0.52
24 7 0.17
25 8 0.19
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:73530718 original size:20 final size:20
Alignment explanation
Indices: 73530693--73530756 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
73530683 TAAATACATT
73530693 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
73530713 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
*
73530733 ATGTGCATATCATACATACC
1 ATGTGCATATCATACATATC
73530753 ATGT
1 ATGT
73530757 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:73530723 original size:11 final size:11
Alignment explanation
Indices: 73530693--73530745 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
73530683 TAAATACATT
73530693 ATGTGCATATC
1 ATGTGCATATC
*
73530704 A--TACATATC
1 ATGTGCATATC
73530713 ATGTGCATATC
1 ATGTGCATATC
* *
73530724 A--TACATGTC
1 ATGTGCATATC
73530733 ATGTGCATATC
1 ATGTGCATATC
73530744 AT
1 AT
73530746 ACATACCATG
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.47
11 17 0.53
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATGTGCATATC
Found at i:73530821 original size:25 final size:25
Alignment explanation
Indices: 73530793--73530842 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
73530783 ATACATAAAC
* * *
73530793 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73530818 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73530843 TGTTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73533264 original size:19 final size:18
Alignment explanation
Indices: 73533227--73533270 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73533217 ATACTTACAG
73533227 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
73533244 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
73533263 TACTAATT
1 TAATAATT
73533271 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:73541607 original size:39 final size:39
Alignment explanation
Indices: 73541559--73541702 Score: 207
Period size: 39 Copynumber: 3.7 Consensus size: 39
73541549 GTAATCATTT
* * *
73541559 TAACTTTTAAGCATATATCACATTACACATATAATCACA
1 TAACATTTAAGCATATATCACAATACTCATATAATCACA
73541598 TAACATTTAAGCATATATCACAATACTCATATAATCACA
1 TAACATTTAAGCATATATCACAATACTCATATAATCACA
* * * **
73541637 TAACATTCAAACATATATCATAATACTCATATAATCATT
1 TAACATTTAAGCATATATCACAATACTCATATAATCACA
*
73541676 TAACATTGAAGCATATATCACAATACT
1 TAACATTTAAGCATATATCACAATACT
73541703 AAAAAACATG
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.33
Consensus pattern (39 bp):
TAACATTTAAGCATATATCACAATACTCATATAATCACA
Found at i:73541772 original size:16 final size:15
Alignment explanation
Indices: 73541737--73541775 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
73541727 GCATAATGGC
*
73541737 CACATATCATATAAA
1 CACATATCAAATAAA
*
73541752 CACATATCACAATATA
1 CACATATCA-AATAAA
73541768 CACATATC
1 CACATATC
73541776 CATAATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (15 bp):
CACATATCAAATAAA
Found at i:73542831 original size:32 final size:32
Alignment explanation
Indices: 73542795--73542860 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
73542785 AATTAGATCA
73542795 TATTTTAAAATTCAACCTAATAAACCCCATTC
1 TATTTTAAAATTCAACCTAATAAACCCCATTC
73542827 TATTTTAAAATTCAACCTAATAAACCCCATTC
1 TATTTTAAAATTCAACCTAATAAACCCCATTC
73542859 TA
1 TA
73542861 AGTTTATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (32 bp):
TATTTTAAAATTCAACCTAATAAACCCCATTC
Found at i:73545641 original size:119 final size:121
Alignment explanation
Indices: 73545425--73545642 Score: 271
Period size: 119 Copynumber: 1.8 Consensus size: 121
73545415 AATGATATCC
** * * * *
73545425 GGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCATTCGT
1 GGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGACCCGAAGGCATTCAT
* * *
73545490 GCGAGTTGCTATATCCGGGCTAAGACTAGAAGGCATTTGTGTTAGCGATTATATTT
66 GCGAGTTGCCACATCCGGGCTAAGACCAGAAGGCATTTGTGTTAGCGATTATATTT
* ** *
73545546 GGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGTTAA-ACCCGAAGGCATTTAT
1 GGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGACCCGAAGGCATTCAT
* *
73545609 GCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
66 GCGAGTTG-CCACATCCGGGCTAAGACCAGAAGGC
73545643 CTTGTGCAAG
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
118 2 0.02
119 39 0.48
120 15 0.19
121 25 0.31
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (121 bp):
GGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGACCCGAAGGCATTCAT
GCGAGTTGCCACATCCGGGCTAAGACCAGAAGGCATTTGTGTTAGCGATTATATTT
Found at i:73545665 original size:39 final size:40
Alignment explanation
Indices: 73545419--73545642 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
73545409 TATTCGAATG
* *
73545419 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
73545460 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
** * * *
73545500 ATATCCGGGCTAAGACTAGAAGGCATTTGTGTTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
** * *
73545540 ATATTTGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
73545580 ATATCCGGGTTAA-ACCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
73545619 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73545643 CTTGTGCAAG
Statistics
Matches: 148, Mismatches: 32, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
39 35 0.24
40 84 0.57
41 29 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:73553683 original size:40 final size:40
Alignment explanation
Indices: 73553559--73553783 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 40
73553549 TATTCGAATG
* * * *
73553559 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * ** * *
73553600 ATAACCGGACTAAGATCCGAAGCCATTCATGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* *
73553640 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * *
73553680 ATATCTGGGCTAAAACCAGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * * *
73553720 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* *
73553760 ACATCAGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73553784 CTTGTGCAAG
Statistics
Matches: 145, Mismatches: 37, Indels: 5
0.78 0.20 0.03
Matches are distributed among these distances:
39 1 0.01
40 118 0.81
41 26 0.18
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:73555369 original size:8 final size:8
Alignment explanation
Indices: 73555356--73555399 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
73555346 TGTATGCTTG
73555356 TGAAATTA
1 TGAAATTA
73555364 TGAAATTA
1 TGAAATTA
*
73555372 TGAAATTG
1 TGAAATTA
*
73555380 TGAAATTG
1 TGAAATTA
73555388 TGAAATTA
1 TGAAATTA
73555396 TGAA
1 TGAA
73555400 CATATATGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (8 bp):
TGAAATTA
Found at i:73555380 original size:24 final size:24
Alignment explanation
Indices: 73555353--73555399 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
73555343 ATATGTATGC
73555353 TTGTGAAATTATGAAATTATGAAA
1 TTGTGAAATTATGAAATTATGAAA
*
73555377 TTGTGAAATTGTGAAATTATGAA
1 TTGTGAAATTATGAAATTATGAA
73555400 CATATATGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (24 bp):
TTGTGAAATTATGAAATTATGAAA
Found at i:73555496 original size:36 final size:36
Alignment explanation
Indices: 73555456--73555524 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
73555446 TTTGAAAGTG
* *
73555456 AATATGAGGGTGTGTTGTCCATGCCATGTGACATTA
1 AATATGAGGGTATGTTATCCATGCCATGTGACATTA
* *
73555492 AATATGTGGGTATGTTATTCATGCCATGTGACA
1 AATATGAGGGTATGTTATCCATGCCATGTGACA
73555525 GTGTTTATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (36 bp):
AATATGAGGGTATGTTATCCATGCCATGTGACATTA
Found at i:73557160 original size:50 final size:52
Alignment explanation
Indices: 73557051--73557171 Score: 174
Period size: 50 Copynumber: 2.4 Consensus size: 52
73557041 ATGAACAAAT
* * *
73557051 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
* * *
73557103 GAATTACATAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTTACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
73557153 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
73557172 TTTATTAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 28 0.46
51 11 0.18
52 22 0.36
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:73557274 original size:39 final size:39
Alignment explanation
Indices: 73557194--73557274 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
73557184 GAACACATAT
* * * *
73557194 TAATGGTGTTCAAACTATGACATAATTAAATACTCATAC
1 TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
73557233 TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
1 TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
73557272 TAA
1 TAA
73557275 AATAACTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.30
Consensus pattern (39 bp):
TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
Found at i:73562737 original size:22 final size:23
Alignment explanation
Indices: 73562709--73562751 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
73562699 GCTATAAATC
*
73562709 TCACAAT-TATAGTTTTAATTAG
1 TCACAATGTATAGTTATAATTAG
*
73562731 TCACAATGTTTAGTTATAATT
1 TCACAATGTATAGTTATAATT
73562752 TTAATTAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (23 bp):
TCACAATGTATAGTTATAATTAG
Found at i:73562757 original size:29 final size:29
Alignment explanation
Indices: 73562715--73562771 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
73562705 AATCTCACAA
*
73562715 TTATAGTTTTAATTAGTCACAATGTTTAG
1 TTATAATTTTAATTAGTCACAATGTTTAG
73562744 TTATAATTTTAATTAGTCACAATGTTTA
1 TTATAATTTTAATTAGTCACAATGTTTA
73562772 CTTTAACAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (29 bp):
TTATAATTTTAATTAGTCACAATGTTTAG
Found at i:73563466 original size:42 final size:42
Alignment explanation
Indices: 73563335--73563549 Score: 231
Period size: 42 Copynumber: 5.1 Consensus size: 42
73563325 GGGAATCTCA
* * * * *
73563335 TACACACAGTATCATACCAATGCCATATCCCAGATATGGTCT
1 TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
*
73563377 TACATGAAA-TCTCGA-ATCGATGCCA-ATAGCCCA-ACTATGGTCT
1 TACA-CAAAGTCTC-ATATCGATGCCATATA--CCAGA-TATGGTCT
* * * *
73563420 TACACGAAGTCTCATATCGATGCCACATACTAGCTATGGTCT
1 TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
* *
73563462 TACACAAAGTCTCATATCAATGCCATATCCCAGATATGGTCT
1 TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
* *
73563504 TACACAAAGTCTCATCTCGATGCCATATCCCAGATATGGTCT
1 TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
73563546 TACA
1 TACA
73563550 TGTAACCTCA
Statistics
Matches: 146, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.01
42 109 0.75
43 32 0.22
44 3 0.02
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (42 bp):
TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
Found at i:73565252 original size:40 final size:40
Alignment explanation
Indices: 73565130--73565266 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 40
73565120 CACCAGTTTG
** * *
73565130 TGGACAAGCCATAAGTAATGCAGATAAACTACCAGAAATG
1 TGGACAAGCCACCAGTAATGCAGATAAACTACCAGTAATA
* * * * * * *
73565170 TGGACATGCCACTAGTATTGTAGACAAGCTACCGGTAATA
1 TGGACAAGCCACCAGTAATGCAGATAAACTACCAGTAATA
* * *
73565210 TGGACAAGCCACCAGTAATGCAGATAAATTGCCAGTAGTA
1 TGGACAAGCCACCAGTAATGCAGATAAACTACCAGTAATA
*
73565250 TGGACAAGCTACCAGTA
1 TGGACAAGCCACCAGTA
73565267 TTGTAGACAA
Statistics
Matches: 76, Mismatches: 21, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (40 bp):
TGGACAAGCCACCAGTAATGCAGATAAACTACCAGTAATA
Found at i:73565267 original size:80 final size:80
Alignment explanation
Indices: 73565130--73565278 Score: 208
Period size: 80 Copynumber: 1.9 Consensus size: 80
73565120 CACCAGTTTG
* * * *
73565130 TGGACAAGCCATAAGTAATGCAGATAAACTACCAGAAATGTGGACATGCCACTAGTATTGTAGAC
1 TGGACAAGCCACAAGTAATGCAGATAAACTACCAGAAATATGGACAAGCCACCAGTATTGTAGAC
73565195 AAGCTACCGGTAATA
66 AAGCTACCGGTAATA
* * * * * *
73565210 TGGACAAGCCACCAGTAATGCAGATAAATTGCCAGTAGTATGGACAAGCTACCAGTATTGTAGAC
1 TGGACAAGCCACAAGTAATGCAGATAAACTACCAGAAATATGGACAAGCCACCAGTATTGTAGAC
73565275 AAGC
66 AAGC
73565279 CACCAAAATT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 59 1.00
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (80 bp):
TGGACAAGCCACAAGTAATGCAGATAAACTACCAGAAATATGGACAAGCCACCAGTATTGTAGAC
AAGCTACCGGTAATA
Found at i:73565275 original size:20 final size:20
Alignment explanation
Indices: 73565183--73565297 Score: 77
Period size: 20 Copynumber: 5.8 Consensus size: 20
73565173 ACATGCCACT
73565183 AGTATTGTAGACAAGCTACC
1 AGTATTGTAGACAAGCTACC
* * * * *
73565203 GGTAATATGGACAAGCCACC
1 AGTATTGTAGACAAGCTACC
* * * ** *
73565223 AGTAATGCAGATAAATTGCC
1 AGTATTGTAGACAAGCTACC
* * *
73565243 AGTAGTATGGACAAGCTACC
1 AGTATTGTAGACAAGCTACC
*
73565263 AGTATTGTAGACAAGCCACC
1 AGTATTGTAGACAAGCTACC
**
73565283 AAAATTGTAGACAAG
1 AGTATTGTAGACAAG
73565298 TTGCAAGTAC
Statistics
Matches: 67, Mismatches: 28, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 67 1.00
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (20 bp):
AGTATTGTAGACAAGCTACC
Found at i:73565296 original size:80 final size:80
Alignment explanation
Indices: 73565127--73565297 Score: 184
Period size: 80 Copynumber: 2.1 Consensus size: 80
73565117 ACTCACCAGT
* * * *
73565127 TTGTGGACAAGCCATAAGTAATGCAGATAAACTACCAGAAATGTGGACATGCCACTAGTATTGTA
1 TTGT-GACAAGCCACAAGTAATGCAGATAAACTACCAGAAATATGGACAAGCCACCAGTATTGTA
* **
73565192 GACAAGCTACCGGTAA
65 GACAAGCCACCGAAAA
* * * * * *
73565208 TATG-GACAAGCCACCAGTAATGCAGATAAATTGCCAGTAGTATGGACAAGCTACCAGTATTGTA
1 T-TGTGACAAGCCACAAGTAATGCAGATAAACTACCAGAAATATGGACAAGCCACCAGTATTGTA
73565272 GACAAGCCACC-AAAA
65 GACAAGCCACCGAAAA
73565287 TTGTAGACAAG
1 TTGT-GACAAG
73565298 TTGCAAGTAC
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
78 2 0.03
79 3 0.04
80 66 0.89
81 1 0.01
82 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (80 bp):
TTGTGACAAGCCACAAGTAATGCAGATAAACTACCAGAAATATGGACAAGCCACCAGTATTGTAG
ACAAGCCACCGAAAA
Found at i:73571467 original size:42 final size:43
Alignment explanation
Indices: 73571420--73571535 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
73571410 CGATATGTGT
*
73571420 TTTCGTGTAAGACCAAGTCTGGGACGTTGGCATC-GTATTTGA
1 TTTCGTGTAAGACCAAGTCTGGGACGTTGGCATCAATATTTGA
** * *
73571462 TTTCGTGTAAGACCCTGTATGGGATAG-TGGCATCAATATTTGA
1 TTTCGTGTAAGACCAAGTCTGGGA-CGTTGGCATCAATATTTGA
* * * *
73571505 TTACATGTAAGACCACGTCTAGGACGTTGGC
1 TTTCGTGTAAGACCAAGTCTGGGACGTTGGC
73571536 GTTGTACGAG
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
42 29 0.49
43 30 0.51
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TTTCGTGTAAGACCAAGTCTGGGACGTTGGCATCAATATTTGA
Found at i:73596097 original size:40 final size:40
Alignment explanation
Indices: 73596014--73596269 Score: 335
Period size: 40 Copynumber: 6.5 Consensus size: 40
73596004 CAACCAAGTA
** *
73596014 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
73596052 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73596092 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
73596132 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73596172 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * * *
73596212 CCTTCGGG-CTTATCTCAGA-ATTAGTCACTTGCACAGATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73596251 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73596270 TTATCATCCG
Statistics
Matches: 193, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
38 14 0.07
39 43 0.22
40 134 0.69
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73614559 original size:39 final size:39
Alignment explanation
Indices: 73614516--73614670 Score: 188
Period size: 39 Copynumber: 4.0 Consensus size: 39
73614506 GTGTGAGATA
*
73614516 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
*
73614555 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * *
73614594 TATATCTGGGCTAAGTCTCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * * * *
73614632 TATAGCCAGGCTTAAAGTCCCGCATGC-TTTGTGGTGGTG
1 TATATCCGGGC-T-AAGTCCCGAAGGCATTTGTGCTGGTG
73614671 ATTGAATTTG
Statistics
Matches: 100, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
38 19 0.19
39 61 0.61
40 20 0.20
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
Found at i:73616850 original size:49 final size:48
Alignment explanation
Indices: 73616737--73616869 Score: 169
Period size: 49 Copynumber: 2.8 Consensus size: 48
73616727 GGGATAAGAT
* *
73616737 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGC-TAGTACATTAAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTTAGTACATCAAA
* * * * * *
73616785 GTCGATGCCGTGTCCCAGACAAGTCTTACACTGGCTTTCGTATATCAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGC-TTAGTACATCAAA
73616834 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCT
73616870 CTCATCTATC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
47 13 0.18
48 19 0.26
49 40 0.56
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTAGTACATCAAA
Found at i:73616890 original size:49 final size:49
Alignment explanation
Indices: 73616737--73616915 Score: 152
Period size: 49 Copynumber: 3.7 Consensus size: 49
73616727 GGGATAAGAT
* * *
73616737 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGTACAT-TA--AA-
1 GCCGATGCCGTGTCCCAGACA-GGTCTTACACTGGCT-CT-CATATATCAAG
* * * *
73616785 GTCGATGCCGTGTCCCAGACAAGTCTTACACTGGCTTTCGTATATCAAG
1 GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAAG
* * *
73616834 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATC-GG
1 GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAAG
** * * *
73616882 TGTTGATGCTGTGTCCCAGATAGGTCCTACACTG
1 -GCCGATGCCGTGTCCCAGACAGGTCTTACACTG
73616916 ACACACAACA
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 3 0.03
47 14 0.13
48 21 0.20
49 67 0.63
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (49 bp):
GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAAG
Found at i:73617044 original size:46 final size:45
Alignment explanation
Indices: 73616979--73617108 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 45
73616969 TCCTGAGGTC
* *
73616979 GATGTATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA-T-GCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTC--AT-AAGTGGCT
* * *
73617025 GATGCATGTCCCAGACATGTCTTACTCTGGCTCTCATAATGTGGCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAA-GTGGCT
* *
73617071 GATGCATGTCCCAAACATGCCTTACACTAGCTCACATA
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATA
73617109 TCACCTAATG
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 67 0.94
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGTGGCT
Found at i:73621539 original size:28 final size:28
Alignment explanation
Indices: 73621507--73621562 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
73621497 TATTTTGAAG
73621507 TATGGTCAAAATTTAAAATTTTACCCAT
1 TATGGTCAAAATTTAAAATTTTACCCAT
*
73621535 TATGGTCAAAGTTTAAAATTTTACCCAT
1 TATGGTCAAAATTTAAAATTTTACCCAT
73621563 GATAGATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (28 bp):
TATGGTCAAAATTTAAAATTTTACCCAT
Found at i:73623341 original size:37 final size:37
Alignment explanation
Indices: 73623291--73623369 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
73623281 TTATTACGAA
* * *
73623291 GTCTTACCCGGACATAATCTCCACACGAAGTTATCCG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCCG
* *
73623328 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCCG
73623365 GTCTT
1 GTCTT
73623370 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCCG
Found at i:73623619 original size:47 final size:47
Alignment explanation
Indices: 73623567--73623803 Score: 366
Period size: 47 Copynumber: 5.0 Consensus size: 47
73623557 ACATTCATCA
* *
73623567 CACATTCATCGCATCGGCCATTAGGCCTTATCACACATATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
* *
73623614 CACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
* *
73623661 CACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTA-T-CACATAT--ATACACTTT
* *
73623712 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
73623759 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
73623804 CTCTTGGCTG
Statistics
Matches: 176, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
47 127 0.72
48 1 0.01
49 9 0.05
50 1 0.01
51 38 0.22
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
Found at i:73623739 original size:98 final size:98
Alignment explanation
Indices: 73623567--73623801 Score: 361
Period size: 98 Copynumber: 2.4 Consensus size: 98
73623557 ACATTCATCA
* * *
73623567 CACATTCATCGCATCGGCCATTAGGCCTTA-T-CACACAT--ATACACTTTCACATTCATCACAT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACAT
* *
73623628 CGGCTATTAGGCCTTATCACACATATACACTTT
66 CGGCCATTAGGCCTTATCACACACATACACTTT
*
73623661 CACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACAT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACAT
* *
73623726 CGGCCATTAGGCCTTATTACATACATACACTTT
66 CGGCCATTAGGCCTTATCACACACATACACTTT
*
73623759 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATATATACA
73623802 CTCTCTTGGC
Statistics
Matches: 127, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 28 0.22
95 1 0.01
96 5 0.04
98 93 0.73
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.31
Consensus pattern (98 bp):
CACATTCATCACATCGGCCATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACACACATACACTTT
Found at i:73648915 original size:29 final size:30
Alignment explanation
Indices: 73648849--73649083 Score: 319
Period size: 29 Copynumber: 8.2 Consensus size: 30
73648839 ACCCCTACAT
*
73648849 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* *
73648877 TCATTTATATGGCCCATCTA-GCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
73648906 ACATTCATATGGCCCATC-AGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
73648935 ACATTCATATGGCCCAT-TAGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
*
73648964 ACATTCATATGGCCCATC-CGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
*
73648993 ACATTCATATGGCCCAT-TAGACCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* * * *
73649021 TCATTTATATGGCTCATCCA-GCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
73649050 ACATTCATATGGCCCAT-TAGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
73649079 ACATT
1 ACATT
73649084 TATGTGGGAT
Statistics
Matches: 181, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
28 42 0.23
29 139 0.77
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAATTC
Found at i:73649056 original size:115 final size:115
Alignment explanation
Indices: 73648849--73649083 Score: 343
Period size: 115 Copynumber: 2.0 Consensus size: 115
73648839 ACCCCTACAT
* * *
73648849 ACATGCATATGGCCCACTAGGCCCAATCTCATTTATATGGCCCATCTAGCCCAATTCACATTCAT
1 ACATTCATATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTAGCCCAATTCACATTCAT
73648914 ATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
66 ATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
* *
73648964 ACATTCATATGGCCCA-TCCGGCCCAATTCACATTCATATGGCCCAT-TAGACCCAA-TCTCATT
1 ACATTCATATGGCCCACT-AGGCCCAA-TCACATTCATATGGCCCATCTAG-CCCAATTCACATT
* *
73649026 TATATGGCTCATCCA-GCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
63 CATATGGCCCAT-CAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
73649079 ACATT
1 ACATT
73649084 TATGTGGGAT
Statistics
Matches: 109, Mismatches: 7, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
114 1 0.01
115 84 0.77
116 24 0.22
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (115 bp):
ACATTCATATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTAGCCCAATTCACATTCAT
ATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
Found at i:73657860 original size:24 final size:23
Alignment explanation
Indices: 73657825--73657869 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
73657815 ATCTCCTCGT
73657825 TTTTCTCCCTGATA-ACTCCCCAA
1 TTTTCTCCCTGA-ACACTCCCCAA
*
73657848 TTTTCTCTTCTGAACACTCCCC
1 TTTTCTC-CCTGAACACTCCCC
73657870 TTGGAGTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.18, C:0.40, G:0.04, T:0.38
Consensus pattern (23 bp):
TTTTCTCCCTGAACACTCCCCAA
Found at i:73664437 original size:29 final size:29
Alignment explanation
Indices: 73664366--73664546 Score: 183
Period size: 29 Copynumber: 6.3 Consensus size: 29
73664356 ACCCCTACAT
* * *
73664366 ACATGCATATGGCCCACTAGGCCCAA-TC
1 ACATTCATATGGCCCATTCGGCCCAATTC
*
73664394 TCA-TCTATATGGCCCATTCGGCCCAATTC
1 ACATTC-ATATGGCCCATTCGGCCCAATTC
* *
73664423 ACGTTCATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTCGGCCCAATTC
* *
73664452 ATATTCATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATTCGGCCCAATTC
73664481 ACATTCATATGGCCCATTAC-GCCCAA-TC
1 ACATTCATATGGCCCATT-CGGCCCAATTC
* * * * * *
73664509 TCATTTATATGACTCATCCGGCCCAAATC
1 ACATTCATATGGCCCATTCGGCCCAATTC
73664538 ACATT-ATAT
1 ACATTCATAT
73664547 TTATGCTTAC
Statistics
Matches: 128, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
27 2 0.02
28 45 0.35
29 78 0.61
30 3 0.02
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATTCGGCCCAATTC
Found at i:73664479 original size:58 final size:57
Alignment explanation
Indices: 73664366--73664546 Score: 249
Period size: 57 Copynumber: 3.2 Consensus size: 57
73664356 ACCCCTACAT
* * * *
73664366 ACATGCATATGGCCCACTAGGCCCAATCTCATCTATATGGCCCATTCGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTC
*
73664423 ACGTTCATATGGCCCATTAGGCCCAAT-TCATATTCATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATCTCAT-TT-ATATGGCCCATCCGGCCCAATTC
* * * *
73664481 ACATTCATATGGCCCATTACGCCCAATCTCATTTATATGACTCATCCGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTC
73664538 ACATT-ATAT
1 ACATTCATAT
73664547 TTATGCTTAC
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
56 8 0.07
57 50 0.45
58 49 0.44
59 4 0.04
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.28
Consensus pattern (57 bp):
ACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTC
Found at i:73664649 original size:19 final size:18
Alignment explanation
Indices: 73664613--73664650 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
73664603 ATGGGCTCAA
73664613 TAGCCCTTCGGCCCCATT
1 TAGCCCTTCGGCCCCATT
73664631 TAGCCCATTCCGG-CCCATT
1 TAGCCC-TT-CGGCCCCATT
73664650 T
1 T
73664651 GGCCTATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 9 0.50
20 3 0.17
ACGTcount: A:0.13, C:0.42, G:0.16, T:0.29
Consensus pattern (18 bp):
TAGCCCTTCGGCCCCATT
Found at i:73666928 original size:17 final size:17
Alignment explanation
Indices: 73666906--73666938 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
73666896 TTCAATATTT
73666906 TTCCAATTATCTCACAA
1 TTCCAATTATCTCACAA
73666923 TTCCAATTATCTCACA
1 TTCCAATTATCTCACA
73666939 CATTTACAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (17 bp):
TTCCAATTATCTCACAA
Found at i:73667069 original size:200 final size:200
Alignment explanation
Indices: 73666718--73667107 Score: 681
Period size: 200 Copynumber: 1.9 Consensus size: 200
73666708 AGAAATAGCC
* *
73666718 CACAATTCCAATTATCTCACACATTTACAACCTATTTTATAAACTTTACAAAATGGTCCCTTCAG
1 CACAATTCCAATTATCTCACACATTTACAACCCATTTTATAAACTTTACAAAATGGTCCATTCAG
* * *
73666783 GTGTTTTCATTAAAACTACTTCACAAAAATTGTTGATTTGACCACCATAACTCATTTTCTTCCAT
66 GTGTTTTCATGAAAACTACTTCACAAAAATTGTTCATTTAACCACCATAACTCATTTTCTTCCAT
*
73666848 AATATTTTAGTAAACATTTCAAAAGCTTTCATGACAAAACCCTAGACTTTCAATATTTTTCCAAT
131 AATATTTTAGCAAACATTTCAAAAGCTTTCATGACAAAACCCTAGACTTTCAATATTTTTCCAAT
73666913 TATCT
196 TATCT
*
73666918 CACAATTCCAATTATCTCACACATTTACAACCCATTTTATAAACTTTACAAAATGGTCCATTGAG
1 CACAATTCCAATTATCTCACACATTTACAACCCATTTTATAAACTTTACAAAATGGTCCATTCAG
73666983 GTGTTTTCATGAAAACTACTTCACAAAAATTGTTCATTTAACCACCATAACTCATTTTCTTCCAT
66 GTGTTTTCATGAAAACTACTTCACAAAAATTGTTCATTTAACCACCATAACTCATTTTCTTCCAT
* * * *
73667048 AATATTTTAGCAAAGATTTCAAAATCTTTCATGACAAAACCTTAGACTTTCAATGTTTTT
131 AATATTTTAGCAAACATTTCAAAAGCTTTCATGACAAAACCCTAGACTTTCAATATTTTT
73667108 GCAAAATAGT
Statistics
Matches: 179, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
200 179 1.00
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.37
Consensus pattern (200 bp):
CACAATTCCAATTATCTCACACATTTACAACCCATTTTATAAACTTTACAAAATGGTCCATTCAG
GTGTTTTCATGAAAACTACTTCACAAAAATTGTTCATTTAACCACCATAACTCATTTTCTTCCAT
AATATTTTAGCAAACATTTCAAAAGCTTTCATGACAAAACCCTAGACTTTCAATATTTTTCCAAT
TATCT
Found at i:73672496 original size:42 final size:42
Alignment explanation
Indices: 73672405--73672501 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 42
73672395 CTAAGATTAA
* * *
73672405 GTGTAAGACCATATCCGGGATAAGGCATCAGTATGATACTTC
1 GTGTAAGACCATATCCGGGATAAGGCATCAATACGAGACTTC
* * * * * * *
73672447 ATATAAGACTATATCTGGGATATGGCATCAATGCGAGATTTC
1 GTGTAAGACCATATCCGGGATAAGGCATCAATACGAGACTTC
73672489 GTGTAAGACCATA
1 GTGTAAGACCATA
73672502 GTTGGGCTAT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCCGGGATAAGGCATCAATACGAGACTTC
Found at i:73675782 original size:27 final size:27
Alignment explanation
Indices: 73675710--73675810 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
73675700 CTTTACAACA
* * * * * *
73675710 TACTTTGAGTGGATTGTCATTTTGACA
1 TACTCTGAATGGATTGCCTTTTTGGCG
*
73675737 TACTCTGAATGAATTGCCTTTTTGGCG
1 TACTCTGAATGGATTGCCTTTTTGGCG
* *
73675764 TACTCTGAATGGATTGCCTTTATGGTG
1 TACTCTGAATGGATTGCCTTTTTGGCG
* *
73675791 TACTATGAATGGATTACCTT
1 TACTCTGAATGGATTGCCTT
73675811 ATGGCAAATT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.42
Consensus pattern (27 bp):
TACTCTGAATGGATTGCCTTTTTGGCG
Found at i:73675867 original size:18 final size:18
Alignment explanation
Indices: 73675844--73675879 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
73675834 TTTGTGGTAT
73675844 TTTGTCATCTAGAAAACA
1 TTTGTCATCTAGAAAACA
73675862 TTTGTCATCTAGAAAACA
1 TTTGTCATCTAGAAAACA
73675880 ATGGTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
TTTGTCATCTAGAAAACA
Found at i:73684715 original size:50 final size:49
Alignment explanation
Indices: 73684601--73684776 Score: 226
Period size: 50 Copynumber: 3.5 Consensus size: 49
73684591 CTGGTACGCA
* * *
73684601 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACG
* ** * *
73684650 TAGTAGCCTGCACTTAGTACTAGACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCAGGTACACG
* * *
73684700 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACG
73684751 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
73684777 TGCGACCTCA
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 30 0.28
50 44 0.40
51 35 0.32
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACG
Found at i:73684784 original size:101 final size:99
Alignment explanation
Indices: 73684601--73684784 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
73684591 CTGGTACGCA
* * *
73684601 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* *
73684666 GTACTAGACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * *
73684700 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
*
73684765 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
73684785 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.57
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:73689688 original size:43 final size:41
Alignment explanation
Indices: 73689588--73689710 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 41
73689578 AACTTATGTT
*
73689588 TTACGTGTAAGACCATGTCTGGAACATCGGCATCGTATTTGA
1 TTACGTGTAAGACCATGTCTGGGACAT-GGCATCGTATTTGA
* * *
73689630 TTTCGTGTAAAACCATGTCTGGGACAGTGGCATCGATATTTGG
1 TTACGTGTAAGACCATGTCTGGGACA-TGGCATCG-TATTTGA
* *
73689673 TTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TTACGTGTAAGACCATGTCTGGGACA-TGGCATCGTAT
73689711 GAGCTTTTCG
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 33 0.47
43 37 0.53
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (41 bp):
TTACGTGTAAGACCATGTCTGGGACATGGCATCGTATTTGA
Found at i:73690447 original size:11 final size:10
Alignment explanation
Indices: 73690426--73690468 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
73690416 TATTGAAACA
73690426 TATGATTTGG
1 TATGATTTGG
73690436 TATGATTTTGG
1 TATGA-TTTGG
*
73690447 TTTAGATTTGG
1 TAT-GATTTGG
73690458 TATGATTTGG
1 TATGATTTGG
73690468 T
1 T
73690469 TGGTGAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 13 0.45
11 14 0.48
12 2 0.07
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:73690454 original size:22 final size:21
Alignment explanation
Indices: 73690429--73690469 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
73690419 TGAAACATAT
73690429 GATTTGGTATGATTTTGGTTTA
1 GATTTGGTATGA-TTTGGTTTA
73690451 GATTTGGTATGATTTGGTT
1 GATTTGGTATGATTTGGTT
73690470 GGTGAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.54
Consensus pattern (21 bp):
GATTTGGTATGATTTGGTTTA
Found at i:73697594 original size:40 final size:40
Alignment explanation
Indices: 73697539--73698008 Score: 778
Period size: 40 Copynumber: 11.8 Consensus size: 40
73697529 GCATGAGCAA
*
73697539 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
73697579 TTGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
73697619 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
73697659 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
73697699 TTGATATATCCGGGATAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
73697739 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
73697779 TTGATATATCCAGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
73697819 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
73697859 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* * * *
73697899 TTGATATATCCGGGCTAAGACCCGAAGACAATTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
73697939 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* * * *
73697979 TTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TTGATATATCCGGGCTAAAACCCGAAGGCA
73698009 ATTGAGCTTG
Statistics
Matches: 410, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 410 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
Found at i:73705938 original size:40 final size:40
Alignment explanation
Indices: 73705883--73706351 Score: 760
Period size: 40 Copynumber: 11.8 Consensus size: 40
73705873 GCATGAGCAA
* *
73705883 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
73705923 TTGATATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
73705963 TTGATATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
73706003 TTGATATATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
73706042 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
73706082 TTGATATATCCAGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
73706122 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
73706162 TTGATATATCCGGGCTAAAACCTGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
73706202 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
73706242 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
73706282 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
73706322 TTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TTGATATATCCGGGCTAAGACCCGAAGGCA
73706352 ATTGAGCTTG
Statistics
Matches: 410, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
39 37 0.09
40 373 0.91
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:73708285 original size:91 final size:94
Alignment explanation
Indices: 73708184--73708353 Score: 231
Period size: 91 Copynumber: 1.8 Consensus size: 94
73708174 TATACATACT
* * *
73708184 GATGCATGTCCCAGACATGTCTTTCACTA-GCACAACTCT-TA-GCCGATG-CGTGTCCCAGACA
1 GATGCATGTCCCACACATGTCTTACACTAGGCAC-ACTCTCTACGCCGATGCCATGTCCCAGACA
*
73708245 CGTCTTACATTGGCTATCATCGTCGAGGCC
65 CGTCTTACACTGGCTATCATCGTCGAGGCC
* *
73708275 GATGCATGTCCCACACATGTCTTACACTAGTGCTCATTCTCTACGCCGATGCCATGTCCCAGACA
1 GATGCATGTCCCACACATGTCTTACACTAG-GCACACTCTCTACGCCGATGCCATGTCCCAGACA
*
73708340 TGTCTTACACTGGC
65 CGTCTTACACTGGC
73708354 ACACAAGTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
91 27 0.40
92 4 0.06
93 5 0.07
94 7 0.10
95 24 0.36
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (94 bp):
GATGCATGTCCCACACATGTCTTACACTAGGCACACTCTCTACGCCGATGCCATGTCCCAGACAC
GTCTTACACTGGCTATCATCGTCGAGGCC
Found at i:73708343 original size:48 final size:46
Alignment explanation
Indices: 73708184--73708350 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 46
73708174 TATACATACT
* * *
73708184 GATGCATGTCCCAGACATGTCTTTCACTA-GCACA-ACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGGCTCATTCTC-TACGCC
* * * * *
73708228 GATGCGTGTCCCAGACACGTCTTACA-TTGGCT-ATCATCGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGGCTCAT--TC-TCTACGCC
*
73708275 GATGCATGTCCCACACATGTCTTACACTAGTGCTCATTCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTAG-GCTCATTCTCTACGCC
73708322 GATGCCATGTCCCAGACATGTCTTACACT
1 GATG-CATGTCCCAGACATGTCTTACACT
73708351 GGCACACAAG
Statistics
Matches: 99, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.02
44 25 0.25
46 2 0.02
47 38 0.38
48 27 0.27
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGGCTCATTCTCTACGCC
Found at i:73708359 original size:141 final size:142
Alignment explanation
Indices: 73708082--73708356 Score: 355
Period size: 139 Copynumber: 2.0 Consensus size: 142
73708072 GGGATATGTT
* * *
73708082 GCCGATGCCATGTCCCGGACATGGTCTTACATTGGCTATCATCATCGAGGCTGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
* * * *
73708147 AGACATGGTCTTATACTAGCTCTCGTCTATACATACTGATGCATGTCCCAGACATGTCTTTCACT
66 ACACATGGTCTTACACTAGCTCTCGTCTATACA-ACCGATGCATGTCCCAGACATGTCTTACACT
73708212 AGCACAACTCTTA
130 AGCACAACTCTTA
* *
73708225 GCCGATG-CGTGTCCCAGACA-CGTCTTACATTGGCTATCATCGTCGAGGCCGATG-CATGTCCC
1 GCCGATGCCATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
* * *
73708287 ACACAT-GTCTTACACTAG-TGCTCATTCTCTAC-GCCGATGCCATGTCCCAGACATGTCTTACA
66 ACACATGGTCTTACACTAGCT-CTC-GTCTATACAACCGATG-CATGTCCCAGACATGTCTTACA
*
73708349 CTGGCACA
128 CTAGCACA
73708357 CAAGTAATCT
Statistics
Matches: 116, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
138 6 0.05
139 42 0.36
140 19 0.16
141 31 0.27
142 11 0.09
143 7 0.06
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.28
Consensus pattern (142 bp):
GCCGATGCCATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
ACACATGGTCTTACACTAGCTCTCGTCTATACAACCGATGCATGTCCCAGACATGTCTTACACTA
GCACAACTCTTA
Found at i:73712352 original size:40 final size:40
Alignment explanation
Indices: 73712301--73712412 Score: 179
Period size: 40 Copynumber: 2.8 Consensus size: 40
73712291 CATTTGAATG
73712301 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
73712341 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
73712381 ATACCCGGGTTAAGATCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
73712413 TTGTGGTTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:73720456 original size:40 final size:40
Alignment explanation
Indices: 73720405--73720516 Score: 179
Period size: 40 Copynumber: 2.8 Consensus size: 40
73720395 CATTTGAATG
73720405 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
73720445 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
73720485 ATACCCGGGTTAAGACCCGAAGGTAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
73720517 TTGTGGTTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:73728586 original size:40 final size:40
Alignment explanation
Indices: 73728496--73728645 Score: 214
Period size: 40 Copynumber: 3.8 Consensus size: 40
73728486 CATTTGAATG
* * *
73728496 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAG-TGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
73728534 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
73728574 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
73728614 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
73728646 TTGTGGTTAT
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 13 0.13
39 17 0.17
40 71 0.70
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:73728657 original size:80 final size:78
Alignment explanation
Indices: 73728496--73728665 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 78
73728486 CATTTGAATG
* * * * *
73728496 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAGTGATTTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGCCCGAAGGCATTTATGCGAGTGATATACCCGGGCTAAGACCCGAAGGCAAT
*
73728561 TGTGCGAGTTGAT
66 TGTGCGAGTGGAT
* * *
73728574 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGGCATTTATGCGAG-TGATATACCCGGGCTAAGACCCGAAGGCA
** *
73728639 ATTGTGCTTGTGGTT
64 ATTGTGCGAGTGGAT
73728654 ATATCC-GGCTAA
1 ATATCCGGGCTAA
73728666 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.18
79 23 0.29
80 41 0.53
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTATGCGAGTGATATACCCGGGCTAAGACCCGAAGGCAAT
TGTGCGAGTGGAT
Found at i:73737106 original size:8 final size:8
Alignment explanation
Indices: 73737093--73737125 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
73737083 CTAGATCAGC
73737093 AAAAGCCG
1 AAAAGCCG
73737101 AAAAGCC-
1 AAAAGCCG
73737108 AAAATGCCG
1 AAAA-GCCG
73737117 AAAAGCCG
1 AAAAGCCG
73737125 A
1 A
73737126 TATTTTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.17
8 15 0.65
9 4 0.17
ACGTcount: A:0.52, C:0.24, G:0.21, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:73737578 original size:27 final size:26
Alignment explanation
Indices: 73737538--73737649 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
73737528 AGGAAGCGTC
*
73737538 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
73737565 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
73737592 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
73737620 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
73737646 CTGG
1 CTGG
73737650 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:73737642 original size:54 final size:54
Alignment explanation
Indices: 73737538--73737649 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
73737528 AGGAAGCGTC
* *
73737538 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
73737592 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
73737646 CTGG
1 CTGG
73737650 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:73745531 original size:3 final size:3
Alignment explanation
Indices: 73745523--73745558 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
73745513 CTGGAAATTG
73745523 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
73745559 AAGAAAAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:73745580 original size:7 final size:7
Alignment explanation
Indices: 73745570--73745596 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
73745560 AGAAAAAGGT
73745570 AAAACTG
1 AAAACTG
73745577 AAAACTG
1 AAAACTG
73745584 AAAACTG
1 AAAACTG
73745591 AAAACT
1 AAAACT
73745597 ACAAATTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.11, T:0.15
Consensus pattern (7 bp):
AAAACTG
Found at i:73746550 original size:18 final size:18
Alignment explanation
Indices: 73746506--73746550 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
73746496 TAGCAGAACT
*
73746506 CATAAAATAAGCAGTATG
1 CATAAAATAAGCAATATG
** *
73746524 CATGTAATAAGCAATTTG
1 CATAAAATAAGCAATATG
73746542 CATAAAATA
1 CATAAAATA
73746551 GGTAGATTAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.27
Consensus pattern (18 bp):
CATAAAATAAGCAATATG
Found at i:73746644 original size:17 final size:16
Alignment explanation
Indices: 73746624--73746686 Score: 72
Period size: 17 Copynumber: 3.7 Consensus size: 16
73746614 CAAATAGCCG
*
73746624 TTCATACTATATAACAT
1 TTCATAC-ACATAACAT
*
73746641 TTCATAACACATAACAG
1 TTCAT-ACACATAACAT
73746658 TTCATACAACATAACAT
1 TTCATAC-ACATAACAT
73746675 TTCATACCACAT
1 TTCATA-CACAT
73746687 CAAAACTCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
16 2 0.05
17 35 0.88
18 3 0.08
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.32
Consensus pattern (16 bp):
TTCATACACATAACAT
Found at i:73746686 original size:34 final size:34
Alignment explanation
Indices: 73746607--73746686 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 34
73746597 GAGATAATAG
* * * * *
73746607 TTCATACCAAATAGCCGTTCATACTATATAACAT
1 TTCATACCACATAACAGTTCATACAACATAACAT
*
73746641 TTCATAACACATAACAGTTCATACAACATAACAT
1 TTCATACCACATAACAGTTCATACAACATAACAT
73746675 TTCATACCACAT
1 TTCATACCACAT
73746687 CAAAACTCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.41, C:0.25, G:0.04, T:0.30
Consensus pattern (34 bp):
TTCATACCACATAACAGTTCATACAACATAACAT
Found at i:73746697 original size:34 final size:34
Alignment explanation
Indices: 73746625--73746697 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
73746615 AAATAGCCGT
* * **
73746625 TCATACTATATAACATTTCATAACACATAACAGT
1 TCATACAACATAACATTTCATAACACATAACAAC
*
73746659 TCATACAACATAACATTTCATACCACATCAA-AAC
1 TCATACAACATAACATTTCATAACACAT-AACAAC
73746693 TCATA
1 TCATA
73746698 TATTTCAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 31 0.94
35 2 0.06
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (34 bp):
TCATACAACATAACATTTCATAACACATAACAAC
Found at i:73747393 original size:36 final size:36
Alignment explanation
Indices: 73747313--73747400 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
73747303 ACACAATTTG
* * *
73747313 CAAATTAATACAGTTTGCCATATTAATACAAATCAC
1 CAAATTAACACAGTTCGCCATAATAATACAAATCAC
* * *
73747349 CAAATTAACACAGTTCGCCATAATAATATAATTCGC
1 CAAATTAACACAGTTCGCCATAATAATACAAATCAC
* *
73747385 CAAGTTAACACGGTTC
1 CAAATTAACACAGTTC
73747401 ACAATATAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (36 bp):
CAAATTAACACAGTTCGCCATAATAATACAAATCAC
Found at i:73747462 original size:17 final size:17
Alignment explanation
Indices: 73747436--73747478 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
73747426 ACACGGCATT
73747436 GTTTGCACATAAGTAAG
1 GTTTGCACATAAGTAAG
* *
73747453 GTTTGTACATAGGTAAG
1 GTTTGCACATAAGTAAG
*
73747470 GTTTACACA
1 GTTTGCACA
73747479 CAACATACAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (17 bp):
GTTTGCACATAAGTAAG
Found at i:73777364 original size:13 final size:13
Alignment explanation
Indices: 73777346--73777374 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
73777336 CATAATATGT
73777346 ATTTGGTATGTTA
1 ATTTGGTATGTTA
73777359 ATTTGGTATGTTA
1 ATTTGGTATGTTA
73777372 ATT
1 ATT
73777375 AGTTTGTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (13 bp):
ATTTGGTATGTTA
Found at i:73782292 original size:7 final size:7
Alignment explanation
Indices: 73782280--73782304 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73782270 GGGATATATT
73782280 ATTTTTA
1 ATTTTTA
73782287 ATTTTTA
1 ATTTTTA
73782294 ATTTTTA
1 ATTTTTA
73782301 ATTT
1 ATTT
73782305 GAATTTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
ATTTTTA
Found at i:73784472 original size:42 final size:43
Alignment explanation
Indices: 73784371--73784477 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 43
73784361 TCCCAGATTG
* * **
73784371 GGTCTTACATGTTATCACATATCGATGCTAATAGCCCAGTTAT
1 GGTCTTACATGTAATCACATAACGATGCTAATAGCCCAGACAT
* * * *
73784414 GGTCTTACATGAAATCAAATAACGATGCTAAT-TCCCTGACAT
1 GGTCTTACATGTAATCACATAACGATGCTAATAGCCCAGACAT
*
73784456 GGTCTTACACGTAATCACATAA
1 GGTCTTACATGTAATCACATAA
73784478 TGGTAATCCT
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
42 25 0.47
43 28 0.53
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATAACGATGCTAATAGCCCAGACAT
Found at i:73793962 original size:39 final size:40
Alignment explanation
Indices: 73793891--73793991 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
73793881 CTCGTACAAG
* * * *
73793891 TGCCTTCGGGACATAGCCCGG-TTATAGTAACT-CATGCAA
1 TGCCTTCGGGACTTAACCCGGATTATAGAAACTCCACG-AA
*
73793930 TGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAGAAACTC-CACGAA
73793970 TGCCTTCGGGACTTAACCCGGA
1 TGCCTTCGGGACTTAACCCGGA
73793992 AAGCATTCAA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
39 23 0.43
40 28 0.52
41 3 0.06
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAGAAACTCCACGAA
Found at i:73796461 original size:40 final size:40
Alignment explanation
Indices: 73796364--73796665 Score: 385
Period size: 40 Copynumber: 7.6 Consensus size: 40
73796354 CCTCGTTCAG
* * * * *
73796364 ATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-A
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* *
73796403 ATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
73796443 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
73796483 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
73796523 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* * * *
73796563 ATGCCTTCGGGACTTAACCCGGATTTAGTATCTGGCACAA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* ** * * * *
73796603 AGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-A
1 ATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACGA
* *
73796643 AAGCCTTCGGGACTTAGCCCGGA
1 ATGCCTTCGGGACTTAACCCGGA
73796666 CAGCATTCAA
Statistics
Matches: 238, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 36 0.15
40 194 0.82
41 8 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
Found at i:73796674 original size:41 final size:41
Alignment explanation
Indices: 73796597--73796674 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
73796587 TTAGTATCTG
* * *
73796597 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
73796638 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
73796675 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:73804447 original size:40 final size:40
Alignment explanation
Indices: 73804350--73804651 Score: 394
Period size: 40 Copynumber: 7.6 Consensus size: 40
73804340 CCTCGTTCAG
* * * * *
73804350 ATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-A
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* *
73804389 ATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
73804429 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
73804469 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
73804509 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* * *
73804549 ATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* ** * * * *
73804589 AGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-A
1 ATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACGA
* *
73804629 AAGCCTTCGGGACTTAGCCCGGA
1 ATGCCTTCGGGACTTAACCCGGA
73804652 CAGCATTCAA
Statistics
Matches: 239, Mismatches: 20, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
39 36 0.15
40 195 0.82
41 8 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
Found at i:73804660 original size:41 final size:41
Alignment explanation
Indices: 73804583--73804660 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
73804573 TTAGTATCTC
* * *
73804583 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
73804624 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
73804661 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:73815283 original size:13 final size:12
Alignment explanation
Indices: 73815263--73815302 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 12
73815253 CAACTTCAAA
73815263 TCAAATTTTTTT
1 TCAAATTTTTTT
73815275 TCGAAATTTTTTTT
1 TC-AAA-TTTTTTT
73815289 TCAAGATTTTTTT
1 TCAA-ATTTTTTT
73815302 T
1 T
73815303 ACTACAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 2 0.08
13 13 0.52
14 10 0.40
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (12 bp):
TCAAATTTTTTT
Found at i:73815287 original size:14 final size:14
Alignment explanation
Indices: 73815268--73815302 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
73815258 TCAAATCAAA
73815268 TTTTTTTTCGAA-AT
1 TTTTTTTTC-AAGAT
73815282 TTTTTTTTCAAGAT
1 TTTTTTTTCAAGAT
73815296 TTTTTTT
1 TTTTTTT
73815303 ACTACAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 2 0.10
14 18 0.90
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (14 bp):
TTTTTTTTCAAGAT
Found at i:73820308 original size:43 final size:43
Alignment explanation
Indices: 73820218--73820324 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
73820208 TGAGATTACT
* * *
73820218 TGTAAGACCATATATGGGATA-TGACATCGATATGAGACTTCG
1 TGTAAGACCATATATGGGATATTGACATCAATATGAGACTCCA
** *
73820260 TGTAAGACCATAGCTGGGATATTGGCATCAATATGAGA-TCCCA
1 TGTAAGACCATATATGGGATATTGACATCAATATGAGACT-CCA
* *
73820303 TGTAAGACAATATTTGGGATAT
1 TGTAAGACCATATATGGGATAT
73820325 GGGATTGGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 20 0.37
43 34 0.63
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATATATGGGATATTGACATCAATATGAGACTCCA
Found at i:73827554 original size:16 final size:16
Alignment explanation
Indices: 73827519--73827560 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
73827509 GTAGATCGGC
*
73827519 AAAAGCCGAAATGCCA
1 AAAAGCTGAAATGCCA
**
73827535 AAAAGCTGAAATGCTG
1 AAAAGCTGAAATGCCA
73827551 AAAAGCTGAA
1 AAAAGCTGAA
73827561 GGCTTGGCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.21, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCA
Found at i:73827863 original size:29 final size:28
Alignment explanation
Indices: 73827820--73827897 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 28
73827810 AGATTGAGCC
* *
73827820 ATATGAATGTGAATTGGGCTAGATGGGCA
1 ATATGAATG-AAATTGGGCCAGATGGGCA
* *
73827849 ATATGAATGCAAATTGGGCCGGATGGGCC
1 ATATGAATG-AAATTGGGCCAGATGGGCA
* *
73827878 ATATAAATGAGATTGGGCCA
1 ATATGAATGAAATTGGGCCA
73827898 TATGCATGTA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 9 0.22
29 32 0.78
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (28 bp):
ATATGAATGAAATTGGGCCAGATGGGCA
Done.