Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 226 of 356
Found at i:74211024 original size:27 final size:27
Alignment explanation
Indices: 74210994--74211171 Score: 155
Period size: 27 Copynumber: 6.6 Consensus size: 27
74210984 ATATTGAGCC
* *
74210994 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
74211021 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
74211048 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
74211076 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
74211103 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
*
74211130 CGCACACTTAGTGCAACA-AAGTCGAA-T
1 CGCACACTTAGTGCTACATAA-TC-AACT
74211157 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74211172 GAACAAGCAC
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.80
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74211133 original size:82 final size:81
Alignment explanation
Indices: 74211015--74211170 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
74211005 TGCTATATAA
* * * *
74211015 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAG-TAGAATCGCA
74211080 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
74211097 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACAAAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACAAAGTAGAATCGCA
74211161 CACTTAGTGC
65 CACTTAGTGC
74211171 TGAACAAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 20 0.31
82 44 0.69
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74215673 original size:53 final size:55
Alignment explanation
Indices: 74215511--74215690 Score: 186
Period size: 53 Copynumber: 3.3 Consensus size: 55
74215501 ATATTGAGCC
* * * * * * *
74215511 CGCACACTCAGTGCTATATAATCAACTTCGCACACTTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAATTCGCACAC-TTAGTGCAACATAGTCAAAT
* ** * *
74215567 CGCACACTTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACAC-TTAGTGCTACATAGTCAAATTCGCACACTTAGTGCAACATAGTCAAAT
* *
74215623 CGCACACTTA-TGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAATTCGCACACTTAGTGCAACATAGTCAAAT
74215676 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74215691 GTACAATTTA
Statistics
Matches: 102, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
53 36 0.35
54 12 0.12
55 3 0.03
56 28 0.27
57 23 0.23
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAATTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:74215678 original size:27 final size:27
Alignment explanation
Indices: 74215511--74215690 Score: 175
Period size: 28 Copynumber: 6.6 Consensus size: 27
74215501 ATATTGAGCC
* * * *
74215511 CGCACACTCAGTGCTATATAATCAACTT
1 CGCACACTTAGTGCTACATAGTCAA-AT
* *
74215539 CGCACACTTTAGTGCTACGTAATCAAAT
1 CGCACAC-TTAGTGCTACATAGTCAAAT
74215567 CGCACACTTTAGTGCTACATAGTCAAACT
1 CGCACAC-TTAGTGCTACATAGTCAAA-T
** * *
74215596 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74215623 CGCACACTTA-TGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74215649 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74215676 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74215691 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.16
27 36 0.28
28 49 0.38
29 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74238329 original size:37 final size:37
Alignment explanation
Indices: 74238265--74238338 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
74238255 TTACAAGCCA
*
74238265 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATATCATGGCTA-ATCACAAC
74238302 AAATCATTATAAGCCA-ATAT-ATTTGGCTAATCACAAC
1 AAATCATTATAAGCCACATATCA--TGGCTAATCACAAC
74238339 GACATCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 1 0.03
36 5 0.15
37 27 0.82
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (37 bp):
AAATCATTATAAGCCACATATCATGGCTAATCACAAC
Found at i:74240549 original size:27 final size:26
Alignment explanation
Indices: 74240495--74240581 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 26
74240485 TTAGTTTACC
* * *
74240495 AAATTACTGAAATACCCCC-AATTGTA
1 AAATTAC-CAAATACCCCCGATTTATA
*
74240521 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAA-TACCCCCGATTTATA
* * *
74240548 AAACTACCCAAATATCCTCGATTTATA
1 AAATTA-CCAAATACCCCCGATTTATA
*
74240575 GAATTAC
1 AAATTAC
74240582 TGTTTTACCT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
25 3 0.06
26 15 0.31
27 25 0.52
28 5 0.10
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (26 bp):
AAATTACCAAATACCCCCGATTTATA
Found at i:74240658 original size:27 final size:27
Alignment explanation
Indices: 74240623--74240752 Score: 138
Period size: 27 Copynumber: 4.8 Consensus size: 27
74240613 TTACCCTCGA
* * *
74240623 TTGTGAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAAT
* *
74240650 TTGTAAAATTACCAAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCTAAT
* *
74240677 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AAT
*
74240704 TTGTAAAATTACCAAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCTAAT
**
74240731 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
74240753 TTGACTTTCT
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.06
27 80 0.91
28 3 0.03
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAAT
Found at i:74240740 original size:54 final size:54
Alignment explanation
Indices: 74240628--74240809 Score: 165
Period size: 54 Copynumber: 3.3 Consensus size: 54
74240618 CTCGATTGTG
* ***
74240628 AAATTACTA-AAATACCC-CTAGTTTGTAAAATTACCAAAATACCAC-TAGTTTGTG
1 AAATTAC-AGAAATACCCTC-AATTTGTAAAATTACCAAAATACC-CTTAGTTTACA
* *
74240682 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTAATTTACA
1 AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTACA
* * * * * *
74240736 AAATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCC-TCAATTTGT-AAAATTACCA-AAATACCCTTAGTTTACA
*
74240792 AAATTACTGAAATACCCT
1 AAATTACAGAAATACCCT
74240810 TGGTTTTTAG
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
53 1 0.01
54 59 0.55
55 9 0.08
56 38 0.36
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTACA
Found at i:74240753 original size:27 final size:27
Alignment explanation
Indices: 74240682--74240810 Score: 118
Period size: 27 Copynumber: 4.7 Consensus size: 27
74240672 CTAGTTTGTG
* * **
74240682 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACAGAAATACCCTTAATTTACA
74240709 AAATTACCA-AAATACCCTTAATTTACA
1 AAATTA-CAGAAATACCCTTAATTTACA
*
74240736 AAATTACAGAAATACCCTTGACTTT-CTAA
1 AAATTACAGAAATACCCTT-AATTTAC--A
* * **
74240765 AAATTATAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCCTTAATTTACA
*
74240792 AAATTACTGAAATACCCTT
1 AAATTACAGAAATACCCTT
74240811 GGTTTTTAGA
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.02
27 55 0.65
28 8 0.10
29 19 0.23
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTAATTTACA
Found at i:74240909 original size:27 final size:27
Alignment explanation
Indices: 74240856--74240933 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
74240846 AAATGACTAA
* *
74240856 AATACCCCTAATA-GGTAAAAAGGCCGT
1 AATACCCCT-ATAGGGTAAAATGACCGT
* *
74240883 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTATAGGGTAAAATGACCGT
*
74240910 AATACCCCTATATGGTAAAATGAC
1 AATACCCCTATAGGGTAAAATGAC
74240934 GAATATGCCA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACCGT
Found at i:74241815 original size:24 final size:25
Alignment explanation
Indices: 74241744--74241813 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
74241734 AGGAAGTGCT
* * *
74241744 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
74241769 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
74241794 AAAAAGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
74241814 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:74242082 original size:31 final size:31
Alignment explanation
Indices: 74242033--74242115 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
74242023 CGCTTACAGT
74242033 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
74242063 AAAGGCTTCGGCCCAGTGATATCATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
74242094 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
74242116 TCGAGACTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 15 0.31
31 34 0.69
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:74245235 original size:12 final size:12
Alignment explanation
Indices: 74245220--74245245 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74245210 GTAATGAACA
74245220 TTGGACATTTAT
1 TTGGACATTTAT
74245232 TTGGACATTTAT
1 TTGGACATTTAT
74245244 TT
1 TT
74245246 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:74248560 original size:15 final size:15
Alignment explanation
Indices: 74248536--74248573 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
74248526 TAAAACCTAA
*
74248536 AAATGAAATAGTATT
1 AAATGGAATAGTATT
74248551 AAATGGAATAGTATT
1 AAATGGAATAGTATT
74248566 AAATGGAA
1 AAATGGAA
74248574 GTAAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29
Consensus pattern (15 bp):
AAATGGAATAGTATT
Found at i:74252285 original size:93 final size:93
Alignment explanation
Indices: 74252173--74252344 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
74252163 CGCCCATAAG
* *
74252173 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
74252238 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
74252266 CGAACTCGGACTCAACTCAACGGGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
74252331 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
74252345 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:74252341 original size:46 final size:46
Alignment explanation
Indices: 74252166--74252341 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
74252156 TGTAACCCGC
* *
74252166 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74252212 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
74252262 -C-TCA-CGAACTCGGACTCAACTCAACGGGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74252305 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74252342 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74262114 original size:12 final size:12
Alignment explanation
Indices: 74262097--74262122 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74262087 GTAAGAACTA
74262097 TGTTGTTTTTAG
1 TGTTGTTTTTAG
74262109 TGTTGTTTTTAG
1 TGTTGTTTTTAG
74262121 TG
1 TG
74262123 ATGCTTCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.27, T:0.65
Consensus pattern (12 bp):
TGTTGTTTTTAG
Found at i:74280226 original size:40 final size:40
Alignment explanation
Indices: 74280171--74280348 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
74280161 TGGATGATAA
74280171 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
74280211 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
74280251 CCGAGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
74280291 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
74280331 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74280349 TACTTGGCTT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 15 0.12
40 113 0.88
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74288357 original size:40 final size:40
Alignment explanation
Indices: 74288302--74288505 Score: 338
Period size: 40 Copynumber: 5.1 Consensus size: 40
74288292 TGGATGATAA
74288302 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
74288342 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74288382 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74288422 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
74288462 CCAGGCTAGGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
74288502 CCGG
1 CCGG
74288506 TTAAATCCTG
Statistics
Matches: 155, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 153 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74290153 original size:254 final size:253
Alignment explanation
Indices: 74289705--74290197 Score: 968
Period size: 254 Copynumber: 1.9 Consensus size: 253
74289695 TCTGGGAAAA
74289705 TTTACGAAACTGATTTTCAAGTTTTGGAACTCAAGATATGAATTTTAAGGTGACAGTGAGGCAGT
1 TTTACGAAACTGATTTTCAAGTTTTGGAACTCAAGATATGAATTTTAAGGTGACAGTGAGGCAGT
*
74289770 TCGCCAGCTTGTCTGGAAATTTTAAAAAAAATGGACTGTGAATAAGTGAATTAAGTCTGTTAACC
66 TAGCCAGCTTGTCTGGAAATTTTAAAAAAAATGGACTGTGAATAAGTGAATTAAGTCTGTTAACC
74289835 CCTCGTGTCCGACTCCGGCAACGGTCTCGGGTACGGGGTATTACAGTTTATTACTAATTAATTTT
131 CCTCGTGTCCGACTCCGGCAACGGTCTCGGGTACGGGGTATTACAGTTTATTACTAATTAATTTT
74289900 CTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTGTTATG
196 CTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTGTTATG
74289958 TTTACGAAACTGATTTTCAAGTTTTGGAACTCAAGATATGAATTTTAAGGTGACAGTGAGGCAGT
1 TTTACGAAACTGATTTTCAAGTTTTGGAACTCAAGATATGAATTTTAAGGTGACAGTGAGGCAGT
74290023 TAGCCAGCTTGTCTGGAAATTTTAAAAAAAAATGGACTGTGAATAAGTGAATTAAGTCTGTTAAC
66 TAGCCAGCTTGTCTGGAAATTTT-AAAAAAAATGGACTGTGAATAAGTGAATTAAGTCTGTTAAC
74290088 CCCTCGTGTCCGACTCCGGCAACGGTCTCGGGTACGGGGTATTACAGTTTATTACTAATTAATTT
130 CCCTCGTGTCCGACTCCGGCAACGGTCTCGGGTACGGGGTATTACAGTTTATTACTAATTAATTT
74290153 TCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAA
195 TCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAA
74290198 TTTATGGTAC
Statistics
Matches: 238, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
253 87 0.37
254 151 0.63
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (253 bp):
TTTACGAAACTGATTTTCAAGTTTTGGAACTCAAGATATGAATTTTAAGGTGACAGTGAGGCAGT
TAGCCAGCTTGTCTGGAAATTTTAAAAAAAATGGACTGTGAATAAGTGAATTAAGTCTGTTAACC
CCTCGTGTCCGACTCCGGCAACGGTCTCGGGTACGGGGTATTACAGTTTATTACTAATTAATTTT
CTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTGTTATG
Found at i:74290274 original size:69 final size:70
Alignment explanation
Indices: 74290142--74290274 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
74290132 CAGTTTATTA
* * * * *
74290142 CTAATTAATTTTCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
74290207 CTTAG
66 CTTAG
74290212 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
74290275 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:74292125 original size:48 final size:48
Alignment explanation
Indices: 74292054--74292293 Score: 372
Period size: 48 Copynumber: 5.0 Consensus size: 48
74292044 CACAAGATAA
* *
74292054 AGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATTTGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
74292102 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
74292150 GGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
74292200 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
74292248 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
74292294 GGAGGTGTGG
Statistics
Matches: 178, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
48 132 0.74
49 4 0.02
50 42 0.24
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:74292237 original size:98 final size:96
Alignment explanation
Indices: 74292054--74292286 Score: 376
Period size: 98 Copynumber: 2.4 Consensus size: 96
74292044 CACAAGATAA
* *
74292054 AGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATTTGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTATATGAGATATGTATATGTGGT
74292119 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* *
74292150 GGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-T-TATATGAGATATGTATATGTG
*
74292215 GTAAAGCCGAATGGCTAGTGTGAAATATGTATG
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
74292248 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
74292287 GTATGTAGGA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
96 38 0.30
97 1 0.01
98 86 0.69
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.30
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTATATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:74292553 original size:74 final size:74
Alignment explanation
Indices: 74292429--74292580 Score: 259
Period size: 74 Copynumber: 2.1 Consensus size: 74
74292419 ACATGAAACT
74292429 TGGAAATATATTCCAGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGAT
1 TGGAAATATATTCCAGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGAT
*
74292494 GACTACGTG
66 AACTACGTG
* * *
74292503 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGAT
1 TGGAAATATATTCCAGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGAT
*
74292568 AACTTCGTG
66 AACTACGTG
74292577 TGGA
1 TGGA
74292581 GATTTCATCT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (74 bp):
TGGAAATATATTCCAGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGAT
AACTACGTG
Found at i:74292585 original size:37 final size:37
Alignment explanation
Indices: 74292444--74292584 Score: 221
Period size: 37 Copynumber: 3.8 Consensus size: 37
74292434 ATATATTCCA
74292444 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
74292481 AGTAAGACCCGATGACTACGTGTGGAAATATAT-TCCG
1 GGTAAGACCCGATGACTACGTGTGGAGAT-TATGTCCG
*
74292518 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
74292555 GGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGTAAGACCCGATGACTACGTGTGGAGATT
74292585 TCATCTGAGC
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
36 2 0.02
37 90 0.95
38 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:74296084 original size:33 final size:33
Alignment explanation
Indices: 74296003--74296069 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
74295993 TCAAACCAAG
74296003 AATTAAGAAGACATAATTTAGAACAAGAAACTA
1 AATTAAGAAGACATAATTTAGAACAAGAAACTA
74296036 AATTAAGAAGACATAATTTAGAACAAGAAACTA
1 AATTAAGAAGACATAATTTAGAACAAGAAACTA
74296069 A
1 A
74296070 GTATTTATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (33 bp):
AATTAAGAAGACATAATTTAGAACAAGAAACTA
Found at i:74302473 original size:14 final size:14
Alignment explanation
Indices: 74302454--74302480 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74302444 ACAAATATTT
74302454 TCATATCATATCAA
1 TCATATCATATCAA
74302468 TCATATCATATCA
1 TCATATCATATCA
74302481 TTTTGAACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (14 bp):
TCATATCATATCAA
Found at i:74321276 original size:29 final size:28
Alignment explanation
Indices: 74321240--74321317 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
74321230 TCATGAGATT
74321240 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
74321270 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
74321297 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
74321318 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:74321458 original size:34 final size:34
Alignment explanation
Indices: 74321415--74321485 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
74321405 GACAGCGGAA
74321415 AAGGTAAGTGTGCGAACTTGAAATGCATGGCACT
1 AAGGTAAGTGTGCGAACTTGAAATGCATGGCACT
74321449 AAGGTAAGTGTGCGAACTTGAAATGCATGGCACT
1 AAGGTAAGTGTGCGAACTTGAAATGCATGGCACT
74321483 AAG
1 AAG
74321486 TGTGTGAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.34, C:0.14, G:0.30, T:0.23
Consensus pattern (34 bp):
AAGGTAAGTGTGCGAACTTGAAATGCATGGCACT
Found at i:74340467 original size:27 final size:27
Alignment explanation
Indices: 74340437--74340614 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
74340427 ATATTGAGCC
* *
74340437 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
74340464 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
74340491 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
74340519 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
74340546 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
74340573 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
74340600 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74340615 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74340576 original size:82 final size:81
Alignment explanation
Indices: 74340458--74340613 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
74340448 TGCTATATAA
* * *
74340458 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
74340523 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74340540 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
74340604 CACTTAGTGC
65 CACTTAGTGC
74340614 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74348500 original size:27 final size:27
Alignment explanation
Indices: 74348470--74348647 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
74348460 ATATTGAGCC
* *
74348470 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
74348497 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
74348524 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
74348552 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
74348579 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
74348606 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
74348633 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74348648 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74348609 original size:82 final size:81
Alignment explanation
Indices: 74348491--74348646 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
74348481 TGCTATATAA
* * *
74348491 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
74348556 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74348573 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
74348637 CACTTAGTGC
65 CACTTAGTGC
74348647 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74353433 original size:21 final size:21
Alignment explanation
Indices: 74353409--74353451 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
74353399 GGACCAAATC
74353409 GGAACAAAATAAAAA-TTTCAA
1 GGAA-AAAATAAAAATTTTCAA
**
74353430 GGAAAAGTTAAAAATTTTCAA
1 GGAAAAAATAAAAATTTTCAA
74353451 G
1 G
74353452 TCAGGGATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (21 bp):
GGAAAAAATAAAAATTTTCAA
Found at i:74359849 original size:2 final size:2
Alignment explanation
Indices: 74359842--74359878 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
74359832 GGTTGTTCTT
*
74359842 TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
74359879 GCCGTAATAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:74368732 original size:40 final size:40
Alignment explanation
Indices: 74368677--74368946 Score: 423
Period size: 40 Copynumber: 6.8 Consensus size: 40
74368667 GCATGAGCAA
* *
74368677 TTGATATATCTGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
74368717 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
74368757 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
74368797 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
74368837 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
74368877 TTGATATATCCAGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
74368917 TTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TTGATATATCCGGGCTAAGACCCGAAGGCA
74368947 ATTGAGCTTG
Statistics
Matches: 214, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:74375621 original size:40 final size:40
Alignment explanation
Indices: 74375566--74375875 Score: 521
Period size: 40 Copynumber: 7.8 Consensus size: 40
74375556 GCATGAGCAA
*
74375566 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
74375606 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
74375646 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
74375686 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
74375726 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
74375766 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
74375806 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
74375846 TTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TTGATATATCCGGGCTAAGACCCGAAGGCA
74375876 ATTGAGCTTG
Statistics
Matches: 259, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 259 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:74390814 original size:48 final size:48
Alignment explanation
Indices: 74390747--74390890 Score: 216
Period size: 48 Copynumber: 3.0 Consensus size: 48
74390737 GGGTTATGTC
* * *
74390747 TGATCCCATGTAAGACCATGTTTGGGACATGGAATTGGAATTGATATG
1 TGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATG
* *
74390795 TGATCCCATGTAAGACCATGTTTGGGACATGGCAGTGGCATCGATATT
1 TGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATG
* * *
74390843 TGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATG
74390891 AGACATCGTG
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATG
Found at i:74390903 original size:48 final size:48
Alignment explanation
Indices: 74390748--74390910 Score: 175
Period size: 48 Copynumber: 3.4 Consensus size: 48
74390738 GGTTATGTCT
* * * * * * *
74390748 GATCCCATGTAAGACCATGTTTGGGACATGGAATTGGAATTGATATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCAGTGGCATCGATATGA
* * **
74390796 GATCCCATGTAAGACCATGTTTGGGACATGGCAGTGGCATCGATATTT
1 GATCCCATGTAAGACCATATCTGGGACATGGCAGTGGCATCGATATGA
* *
74390844 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATATCTGGGACATGGCAGTGGCATCGATATGA
* *
74390892 GA-CATCGTGTAAGACCATA
1 GATC-CCATGTAAGACCATA
74390911 GTTGCGGTAT
Statistics
Matches: 101, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 100 0.99
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTGGGACATGGCAGTGGCATCGATATGA
Found at i:74394556 original size:22 final size:22
Alignment explanation
Indices: 74394531--74394577 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
74394521 GTGAATTTTA
74394531 ATGCTTT-ATTACTATT-ATGAGT
1 ATGCTTTGATTA-T-TTCATGAGT
74394553 ATGCTTTGATTATTTCATGAGT
1 ATGCTTTGATTATTTCATGAGT
74394575 ATG
1 ATG
74394578 TGATTGGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 2 0.09
22 17 0.74
23 4 0.17
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.49
Consensus pattern (22 bp):
ATGCTTTGATTATTTCATGAGT
Found at i:74394730 original size:21 final size:21
Alignment explanation
Indices: 74394701--74394775 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
74394691 CTAGGAACTA
*
74394701 TGTGATCTGAACTCATTGAGT
1 TGTGGTCTGAACTCATTGAGT
** *
74394722 TGTGGTCTGAGTTCA-TGATAT
1 TGTGGTCTGAACTCATTGA-GT
*
74394743 ATGTGG-CATCGAACTCATTGAGG
1 -TGTGGTC-T-GAACTCATTGAGT
74394766 TGTGGTCTGA
1 TGTGGTCTGA
74394776 GTTCATGATG
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 3 0.08
21 16 0.40
22 12 0.30
23 6 0.15
24 3 0.08
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.36
Consensus pattern (21 bp):
TGTGGTCTGAACTCATTGAGT
Found at i:74396258 original size:20 final size:20
Alignment explanation
Indices: 74396233--74396299 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
74396223 GATATGATAT
*
74396233 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
74396253 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
74396273 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
74396293 ACATGAT
1 ACATGAT
74396300 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:74396378 original size:26 final size:26
Alignment explanation
Indices: 74396349--74396479 Score: 144
Period size: 26 Copynumber: 5.2 Consensus size: 26
74396339 GAGGAAGTGC
74396349 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
74396375 AAAAGGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
74396401 AAAAAGGCTTATGCCCAAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
74396427 AAAATGGCTT-TGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
74396452 AAAAGGGCTT-GGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
74396475 AAAAG
1 AAAAG
74396480 AGGCAGGGCC
Statistics
Matches: 87, Mismatches: 18, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
23 5 0.06
24 3 0.03
25 26 0.30
26 53 0.61
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:74396428 original size:52 final size:51
Alignment explanation
Indices: 74396349--74396461 Score: 172
Period size: 52 Copynumber: 2.2 Consensus size: 51
74396339 GAGGAAGTGC
*
74396349 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCAAGTTTATTGAAAAGGGCTT-TGCCCCAATTTACCG
* * * *
74396401 AAAAAGGCTTATGCCCAAGTTTATTGAAAATGGCTTTGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCAAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
74396452 AAAAGGGCTT
1 AAAAGGGCTT
74396462 GGCCCCAGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
51 22 0.40
52 33 0.60
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCAAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
Found at i:74396676 original size:42 final size:42
Alignment explanation
Indices: 74396617--74396708 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
74396607 TAGTCTCCCC
* ** *
74396617 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
74396659 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
74396701 AAATGGGC
1 AAATGGGC
74396709 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:74396768 original size:31 final size:31
Alignment explanation
Indices: 74396732--74396846 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
74396722 CGTTTACAGT
* *
74396732 AAAGGCTTCGGCCTAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
74396763 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
74396794 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
74396825 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
74396847 TCAAGACTAA
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:74410604 original size:15 final size:16
Alignment explanation
Indices: 74410584--74410613 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
74410574 TTGTTACTGT
74410584 TTTAAACT-TTTAATC
1 TTTAAACTATTTAATC
74410599 TTTAAACTATTTAAT
1 TTTAAACTATTTAAT
74410614 TTGGGTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAAACTATTTAATC
Found at i:74420398 original size:11 final size:11
Alignment explanation
Indices: 74420382--74420406 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74420372 ATATGATATT
74420382 TTATTATTTTA
1 TTATTATTTTA
74420393 TTATTATTTTA
1 TTATTATTTTA
74420404 TTA
1 TTA
74420407 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:74423253 original size:47 final size:47
Alignment explanation
Indices: 74423198--74423320 Score: 203
Period size: 47 Copynumber: 2.6 Consensus size: 47
74423188 ATATTTGAGT
74423198 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAA-TCAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACT-AGGCA
*
74423245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCA
* *
74423292 TCCGAACTCATTGAATTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
74423321 ACTTATGGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
47 71 0.99
48 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCA
Found at i:74424907 original size:11 final size:11
Alignment explanation
Indices: 74424891--74424915 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74424881 ATATGATATT
74424891 TTATTATTTTA
1 TTATTATTTTA
74424902 TTATTATTTTA
1 TTATTATTTTA
74424913 TTA
1 TTA
74424916 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:74431144 original size:44 final size:45
Alignment explanation
Indices: 74431079--74431164 Score: 120
Period size: 44 Copynumber: 1.9 Consensus size: 45
74431069 ACCTCTATTC
* *
74431079 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTA
***
74431123 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCA
74431165 ACACACCTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 19 0.53
45 17 0.47
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.28
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTA
Found at i:74431172 original size:16 final size:16
Alignment explanation
Indices: 74431150--74431218 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
74431140 GATTAGCTAT
74431150 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
74431166 CACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
74431183 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
74431199 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
74431215 TACA
1 TACA
74431219 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.38, C:0.39, G:0.00, T:0.23
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:74431192 original size:33 final size:32
Alignment explanation
Indices: 74431150--74431218 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
74431140 GATTAGCTAT
74431150 TACACCTCTAATCCAACACACCTCTAATCCCAA
1 TACACCTCTAATCCAACACACCTCTAAT-CCAA
*
74431183 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAACACACCTCTAATCCAA
74431215 TACA
1 TACA
74431219 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.38, C:0.39, G:0.00, T:0.23
Consensus pattern (32 bp):
TACACCTCTAATCCAACACACCTCTAATCCAA
Found at i:74453490 original size:24 final size:26
Alignment explanation
Indices: 74453443--74453492 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
74453433 AGCCATGAAA
74453443 TCGCACACTTAGTGCTTAATATTTTCCT
1 TCGCACACTTAGTG--TAATATTTTCCT
74453471 TCGCACACTTAGTG-AA-ATTTTC
1 TCGCACACTTAGTGTAATATTTTC
74453493 ATGTCCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.27
25 2 0.09
28 14 0.64
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (26 bp):
TCGCACACTTAGTGTAATATTTTCCT
Found at i:74455588 original size:20 final size:19
Alignment explanation
Indices: 74455544--74455598 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
74455534 AACACTAAGA
* *
74455544 ACCACTCCATTCACTTTCTT
1 ACCA-TCCATTTACTTACTT
74455564 ACCATTCCATTTACTTACTT
1 ACCA-TCCATTTACTTACTT
*
74455584 TCCATCTCATTTACT
1 ACCATC-CATTTACT
74455599 AATCATAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.22, C:0.35, G:0.00, T:0.44
Consensus pattern (19 bp):
ACCATCCATTTACTTACTT
Found at i:74456205 original size:87 final size:87
Alignment explanation
Indices: 74456114--74456287 Score: 303
Period size: 87 Copynumber: 2.0 Consensus size: 87
74456104 GAAACTTCCA
*
74456114 TTTCAACCTTTTCATAAAGGCATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
1 TTTCAACCTTTTCATAAAGACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
*
74456179 TGCCCGTTAAACCGGTTAGAAT
66 CGCCCGTTAAACCGGTTAGAAT
* *
74456201 TTTCAACCTTTTCATAAATACATGACATAGTTTCTTTTGATCACTTGTCATTCATTTCCTTTACA
1 TTTCAACCTTTTCATAAAGACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
*
74456266 CGCCCGTTAAACCGTTTAGAAT
66 CGCCCGTTAAACCGGTTAGAAT
74456288 ATCAGTGGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 82 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.40
Consensus pattern (87 bp):
TTTCAACCTTTTCATAAAGACATGACATAGTTTCTTTTGATCACTTGTCATGCATTTCCTTTACA
CGCCCGTTAAACCGGTTAGAAT
Found at i:74458862 original size:19 final size:18
Alignment explanation
Indices: 74458840--74458890 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 18
74458830 AACTAATTTT
74458840 TAATATTAATTTTTTAAGA
1 TAATATTAATTTTTTAA-A
74458859 TAAT-TTAATTATTTTTAAA
1 TAATATTAA-T-TTTTTAAA
74458878 T-ATATTAAATTTT
1 TAATATT-AATTTT
74458891 ATCCAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
18 9 0.32
19 10 0.36
20 9 0.32
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TAATATTAATTTTTTAAA
Found at i:74458888 original size:20 final size:20
Alignment explanation
Indices: 74458850--74458888 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
74458840 TAATATTAAT
*
74458850 TTTTTAAGATAATTTAATTA
1 TTTTTAAGATAATTAAATTA
74458870 TTTTTAA-ATATATTAAATT
1 TTTTTAAGATA-ATTAAATT
74458889 TTATCCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTTTAAGATAATTAAATTA
Found at i:74459241 original size:20 final size:20
Alignment explanation
Indices: 74459194--74459241 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
74459184 ATAATAATAT
74459194 TAAAATA-TTAAACACATTA
1 TAAAATATTTAAACACATTA
* *
74459213 TATATTATTTATAA-ACATTA
1 TAAAATATTTA-AACACATTA
74459233 TAAAATATT
1 TAAAATATT
74459242 ATTTTAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 5 0.22
20 16 0.70
21 2 0.09
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAATATTTAAACACATTA
Found at i:74460664 original size:48 final size:48
Alignment explanation
Indices: 74460590--74460816 Score: 236
Period size: 48 Copynumber: 4.9 Consensus size: 48
74460580 GGCTTATGTA
74460590 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * * *
74460638 TGATCCCATGTAAGACCATATATGGGATATGGTC-TTAGCATCTATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGG-CATTGGCATCGATATG
** *
74460686 TGATTTCGTGTAAGACCATGTCTGGG--A---CA-TGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * *
74460728 AGA-CATCATGTAAGACCATGTCTGGGACATGGCATTGACATCGATATG
1 TGATC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * * *
74460776 TAATGCCATGTAAGACCATATCTGGGATACGGCATTGGCAT
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
74460817 TTTACTATGT
Statistics
Matches: 145, Mismatches: 24, Indels: 20
0.77 0.13 0.11
Matches are distributed among these distances:
42 34 0.23
44 1 0.01
46 1 0.01
47 2 0.01
48 106 0.73
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:74460775 original size:90 final size:92
Alignment explanation
Indices: 74460595--74460802 Score: 219
Period size: 90 Copynumber: 2.2 Consensus size: 92
74460585 ATGTATGATC
*
74460595 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATA
1 CCATGTAAGACCATGTCTGGG--A--GCATTGGCATCGATATGAGATCCCATGTAAGACCATATA
* * * *
74460660 TGGGATATGGTCTTAGCATCTATATGTGATT
62 TGGGACATGGTCTTAGCATCGATATGTAATG
* * * * *
74460691 TCGTGTAAGACCATGTCTGGGA-CA-TGGCATCGATATGAGA-CATCATGTAAGACCATGTCTGG
1 CCATGTAAGACCATGTCTGGGAGCATTGGCATCGATATGAGATC-CCATGTAAGACCATATATGG
74460753 GACATGG-CATT-GACATCGATATGTAATG
65 GACATGGTC-TTAG-CATCGATATGTAATG
*
74460781 CCATGTAAGACCATATCTGGGA
1 CCATGTAAGACCATGTCTGGGA
74460803 TACGGCATTG
Statistics
Matches: 96, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
89 3 0.03
90 71 0.74
91 2 0.02
94 1 0.01
96 19 0.20
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (92 bp):
CCATGTAAGACCATGTCTGGGAGCATTGGCATCGATATGAGATCCCATGTAAGACCATATATGGG
ACATGGTCTTAGCATCGATATGTAATG
Found at i:74464315 original size:27 final size:27
Alignment explanation
Indices: 74464285--74464462 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
74464275 ATATTGAGCC
* *
74464285 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
74464312 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
74464339 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
74464367 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
74464394 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
74464421 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
74464448 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74464463 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74464424 original size:82 final size:81
Alignment explanation
Indices: 74464306--74464461 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
74464296 TGCTATATAA
* *
74464306 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74464371 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
74464388 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74464452 CACTTAGTGC
65 CACTTAGTGC
74464462 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74472432 original size:27 final size:27
Alignment explanation
Indices: 74472402--74472577 Score: 176
Period size: 27 Copynumber: 6.5 Consensus size: 27
74472392 ATATTGAGCC
* *
74472402 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
74472429 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
74472456 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
74472484 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
74472511 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
74472538 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
74472565 CGCACACTTAGTG
1 CGCACACTTAGTG
74472578 TTGTACAATT
Statistics
Matches: 128, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
27 103 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74472541 original size:82 final size:81
Alignment explanation
Indices: 74472423--74472577 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 81
74472413 TGCTATATAA
* *
74472423 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74472488 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
74472505 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74472569 CACTTAGTG
65 CACTTAGTG
74472578 TTGTACAATT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74491624 original size:51 final size:51
Alignment explanation
Indices: 74491547--74491751 Score: 227
Period size: 51 Copynumber: 4.0 Consensus size: 51
74491537 CGGATTCTCG
* * * * *
74491547 GTGGCCTGCACATAGTACCACCCTTGTAGT-CAAAGCTACCTTCTTCGCAAG
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTACTTTCTTCACAAA
* *
74491598 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCCTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTA-CTTTCTTCACAAA
* * * *
74491650 GTGGCCATCACATAGTACCATACTTGTGTCCAAAGCTA-TTATATTCAAAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTACTT-TCTTCACAAA
* * * *
74491701 GTAGCCTTCACATGGTACCACACTTGTGTCCAAAGCTATTTTATTC-CAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTACTTTCTTCACAAA
74491751 G
1 G
74491752 GTTCAATTGG
Statistics
Matches: 132, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
50 7 0.05
51 79 0.60
52 46 0.35
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTACTTTCTTCACAAA
Found at i:74491801 original size:28 final size:28
Alignment explanation
Indices: 74491770--74491864 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
74491760 GGGAACTTTC
*
74491770 TCACTTAACACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* *
74491798 TCACTTAGCACATTACCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
74491826 TCACTTAG----ATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
74491850 TCATTTAGCACAATG
1 TCACTTAGCACAATG
74491865 TCATATCATA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
24 20 0.36
28 36 0.64
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:74493901 original size:27 final size:27
Alignment explanation
Indices: 74493865--74493927 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
74493855 TTACAAAACT
74493865 TTCTTCTACATCGTCTAAGCAGCCCAC
1 TTCTTCTACATCGTCTAAGCAGCCCAC
* *
74493892 TTCTTCTACATCTTCTAAGCAGGCCAC
1 TTCTTCTACATCGTCTAAGCAGCCCAC
*
74493919 TTCTCCTAC
1 TTCTTCTAC
74493928 TTCTTCACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.21, C:0.37, G:0.10, T:0.33
Consensus pattern (27 bp):
TTCTTCTACATCGTCTAAGCAGCCCAC
Found at i:74496206 original size:42 final size:42
Alignment explanation
Indices: 74496130--74496219 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
74496120 ACTAAGATTA
** * * *
74496130 GTGTAAGACCATATCTGGGATACGGTATCTATATGAGATTTT
1 GTGTAAGACCATATCTGGGATACGACATCGATATGAGACTTC
* *
74496172 GTGTAAGACCATATTTGGGATATGACATCGATATGAGACTTC
1 GTGTAAGACCATATCTGGGATACGACATCGATATGAGACTTC
74496214 GTGTAA
1 GTGTAA
74496220 CACCCCTTAC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATACGACATCGATATGAGACTTC
Found at i:74498944 original size:30 final size:30
Alignment explanation
Indices: 74498908--74498968 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
74498898 TCCTTAACTC
*
74498908 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
74498938 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
74498968 A
1 A
74498969 GACTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:74505136 original size:43 final size:43
Alignment explanation
Indices: 74505081--74505205 Score: 198
Period size: 43 Copynumber: 2.9 Consensus size: 43
74505071 GCTGGTATTA
*
74505081 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
*
74505124 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* *
74505167 TATTCGGGCTTTCGTGCCTAGCAGG-TGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCT-TCATGCCGGTGA
74505206 AATGATATGT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
42 1 0.01
43 75 0.99
ACGTcount: A:0.12, C:0.23, G:0.34, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
Found at i:74505629 original size:43 final size:45
Alignment explanation
Indices: 74505546--74505643 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 45
74505536 GCTTAGTAGA
* * *
74505546 CTATAATGCCAGTGAGATACTATTCGGGCTTTCGAGCCTAGCAGG
1 CTATAATGCCGGTGAAATACTATTCGGGCTCTCGAGCCTAGCAGG
74505591 CTATAATGCCGGTGAAATGA-TA-TCGGGC-CTCGAGCCTAGCAGG
1 CTATAATGCCGGTGAAAT-ACTATTCGGGCTCTCGAGCCTAGCAGG
*
74505634 CGA-AATGCCG
1 CTATAATGCCG
74505644 ATGATTTGAG
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 7 0.15
43 16 0.33
44 6 0.12
45 18 0.38
46 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (45 bp):
CTATAATGCCGGTGAAATACTATTCGGGCTCTCGAGCCTAGCAGG
Found at i:74511196 original size:41 final size:41
Alignment explanation
Indices: 74511151--74511230 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
74511141 GATCATTTCT
74511151 AGAAAAGTTTTACTAAAGCTACCTTCTTATTTCTCAGTTGC
1 AGAAAAGTTTTACTAAAGCTACCTTCTTATTTCTCAGTTGC
74511192 AGAAAAGTTTTACTAAAGCTACCTTCTTATTTCTCAGTT
1 AGAAAAGTTTTACTAAAGCTACCTTCTTATTTCTCAGTT
74511231 CTTTCACTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (41 bp):
AGAAAAGTTTTACTAAAGCTACCTTCTTATTTCTCAGTTGC
Found at i:74517888 original size:9 final size:9
Alignment explanation
Indices: 74517876--74517902 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
74517866 TTATATTGAG
74517876 TGAAATGAA
1 TGAAATGAA
74517885 TGAAATGAA
1 TGAAATGAA
74517894 TGAAATGAA
1 TGAAATGAA
74517903 CGATTGAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (9 bp):
TGAAATGAA
Found at i:74519926 original size:93 final size:93
Alignment explanation
Indices: 74519814--74519984 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
74519804 GCCCCTAAGT
* * *
74519814 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
74519878 ATGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
74519907 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
74519972 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74519985 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 69 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74519980 original size:46 final size:47
Alignment explanation
Indices: 74519809--74519981 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 47
74519799 AACCCGCCCC
* * * *
74519809 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
* * *
74519855 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-ATTTGCATCCA
* *
74519903 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
*
74519948 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74519982 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.54
47 30 0.29
48 3 0.03
49 2 0.02
50 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
Found at i:74520438 original size:30 final size:30
Alignment explanation
Indices: 74520404--74520463 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
74520394 ATTTAATACG
74520404 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
74520434 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
74520464 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:74528378 original size:42 final size:43
Alignment explanation
Indices: 74528263--74528412 Score: 141
Period size: 43 Copynumber: 3.5 Consensus size: 43
74528253 GTCAAGACAT
*
74528263 CGTGTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATTTA
* *
74528306 CGTATAAGACCATGTCTGGGACATC-CGCATCGTATCT-A-ATTT-
1 CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TGAGATTTA
* * *
74528348 TGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCG--ATTGAGATTTA
* *
74528391 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
74528413 GTCGGTATTG
Statistics
Matches: 88, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
42 29 0.33
43 54 0.61
44 4 0.05
45 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATTTA
Found at i:74530171 original size:40 final size:40
Alignment explanation
Indices: 74530104--74530360 Score: 265
Period size: 40 Copynumber: 6.5 Consensus size: 40
74530094 ACCCAAGTAT
*
74530104 CTTCGGGAT-TTAG-CCGGATATAACAACTCACACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCACACAAATGC
*
74530143 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
* *
74530183 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
* *
74530223 CTTCGGGTCTTAGCCCGGATATAATC-ACT-ACCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCA-CACAAATGC
* * *
74530263 CTTCGGGTCTTAGCTCGGATATAATC-ACT-AGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCA-CACAAATGC
* * * * * *
74530303 CTTCGGGACATAGCCCGGTTATAGCAACTCGCACGAATTC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
* * *
74530343 GTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
74530361 TTATCATCCG
Statistics
Matches: 189, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.07
40 173 0.92
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
Found at i:74530236 original size:80 final size:80
Alignment explanation
Indices: 74530104--74530360 Score: 299
Period size: 80 Copynumber: 3.2 Consensus size: 80
74530094 ACCCAAGTAT
*
74530104 CTTCGGGAT-TTAG-CCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
74530167 CAACTCGCACAAATGC
65 CAACTCGCACAAATGC
* * *
74530183 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT-AG
*
74530248 C-ACTAC-CATAAATGC
65 CAACT-CGCACAAATGC
* * * * * *
74530263 CTTCGGGTCTTAGCTCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
* *
74530327 CAACTCGCACGAATTC
65 CAACTCGCACAAATGC
* * *
74530343 GTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
74530361 TTATCATCCG
Statistics
Matches: 150, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 14 0.09
80 131 0.87
81 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
AACTCGCACAAATGC
Found at i:74530330 original size:120 final size:119
Alignment explanation
Indices: 74530104--74530360 Score: 315
Period size: 120 Copynumber: 2.1 Consensus size: 119
74530094 ACCCAAGTAT
74530104 CTTCGGGAT-TTAGCCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
* * *
74530168 AACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
65 AACTAGCACAAATGCCTTCGGGACATAGCCCAGATATAGCAACTCGCACAAATGC
* *
74530223 CTTCGGGTCTTAGCCCGGATATAATC-ACT-ACCATAAATGCCTTCGGGTCTTAGCTCGGATATA
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATAT-
* * * * * *
74530286 ATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCACGAATTC
62 AGCAACTAGCACAAATGCCTTCGGGACATAGCCCAGATATAGCAACTCGCACAAATGC
* *
74530343 GTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
74530361 TTATCATCCG
Statistics
Matches: 119, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 1 0.01
119 12 0.10
120 103 0.87
121 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
CTTCGGGTCTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTAGCACAAATGCCTTCGGGACATAGCCCAGATATAGCAACTCGCACAAATGC
Found at i:74554163 original size:28 final size:28
Alignment explanation
Indices: 74554097--74554224 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
74554087 CATGAGATTG
* * **
74554097 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
74554126 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
74554154 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
74554183 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
74554211 ACACTAAATGTGCG
1 GCACTAAGTGTGCG
74554225 GACTTACTAT
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 44 0.50
29 44 0.50
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:74554186 original size:57 final size:57
Alignment explanation
Indices: 74554097--74554224 Score: 177
Period size: 57 Copynumber: 2.2 Consensus size: 57
74554087 CATGAGATTG
*
74554097 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
74554154 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* *
74554211 ACACTAAATGTGCG
1 GCACTAAGTGTGCG
74554225 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:74562023 original size:28 final size:28
Alignment explanation
Indices: 74561990--74562117 Score: 132
Period size: 28 Copynumber: 4.5 Consensus size: 28
74561980 CATGAGATTG
**
74561990 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGGGTTT-AATTATATA
** *
74562019 -CACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGGGTTTAATTATATA
* * *
74562046 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGGGTTTAATTATAT-A
* *
74562075 GCACTAAGTTTGCGGGTTTGATTATATA
1 GCACTAAGTGTGCGGGTTTAATTATATA
*
74562103 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
74562118 ACTTACTATA
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
27 6 0.07
28 54 0.64
29 25 0.29
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGGGTTTAATTATATA
Found at i:74562088 original size:29 final size:29
Alignment explanation
Indices: 74562019--74562116 Score: 146
Period size: 28 Copynumber: 3.4 Consensus size: 29
74562009 AAATTGCATA
*
74562019 CACTAAGTGTGCAAGTTTGATTATAT-AG
1 CACTAAGTGTGCGAGTTTGATTATATAAG
*
74562047 CACTAAGTGTGCGAGTTTGATTATGTAAG
1 CACTAAGTGTGCGAGTTTGATTATATAAG
* *
74562076 CACTAAGTTTGCGGGTTTGATTATATAA-
1 CACTAAGTGTGCGAGTTTGATTATATAAG
74562104 CACTAAGTGTGCG
1 CACTAAGTGTGCG
74562117 GACTTACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 36 0.57
29 27 0.43
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTTGATTATATAAG
Found at i:74565007 original size:20 final size:20
Alignment explanation
Indices: 74564982--74565026 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
74564972 AGGGACTAAA
* *
74564982 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
74565002 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
74565022 ATGAA
1 ATGAA
74565027 CACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:74571374 original size:29 final size:29
Alignment explanation
Indices: 74571332--74571388 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
74571322 GCTCACTCAC
74571332 TCATACATTTTTTATGGCATACAACATGT
1 TCATACATTTTTTATGGCATACAACATGT
74571361 TCATACATTTTTTATGGCATACAACATG
1 TCATACATTTTTTATGGCATACAACATG
74571389 GTATATTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.40
Consensus pattern (29 bp):
TCATACATTTTTTATGGCATACAACATGT
Found at i:74584334 original size:54 final size:55
Alignment explanation
Indices: 74584193--74584334 Score: 142
Period size: 54 Copynumber: 2.6 Consensus size: 55
74584183 CTCACCATTG
* * * * * * * *
74584193 CCATGCCTTGGTATGGTCTTACATGGGATCTTTGCCTTTTAGTAGTTTATCAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAGAAATTTACCAATA
* * * *
74584248 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTA-AAATTTACCAATA
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAGAAATTTACCAATA
* * *
74584302 TCATGCCTTGGCATGATCTTACTTGGTATCCTT
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
74584335 AAACCCTAGT
Statistics
Matches: 68, Mismatches: 19, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
54 35 0.51
55 33 0.49
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (55 bp):
CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTGTAGAAATTTACCAATA
Found at i:74586371 original size:47 final size:46
Alignment explanation
Indices: 74586302--74586466 Score: 201
Period size: 47 Copynumber: 3.5 Consensus size: 46
74586292 ATGCCGTGTC
*
74586302 CCAGACACGGTCTTACACTGGCTTATATCTCAAGTCGAAGCCATGTT
1 CCAGACACGGTCTTACACTGGCTTATATCTCAAGTCAAAGCCATG-T
74586349 CCAGACACGGTCTTACACTGGCTTATATCTCAAGTCAAAGCCATGT
1 CCAGACACGGTCTTACACTGGCTTATATCTCAAGTCAAAGCCATGT
* ** * *
74586395 CTCAGACACGGTCTTACACTGAC-TATCATCTTGTAGCCAACG-CATGT
1 C-CAGACACGGTCTTACACTGGCTTAT-ATC-TCAAGTCAAAGCCATGT
*
74586442 CCAAGACA-TGTCTTACACTGGCTTA
1 CC-AGACACGGTCTTACACTGGCTTA
74586467 CGTCTCGAGG
Statistics
Matches: 105, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
46 18 0.17
47 80 0.76
48 7 0.07
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (46 bp):
CCAGACACGGTCTTACACTGGCTTATATCTCAAGTCAAAGCCATGT
Found at i:74586527 original size:46 final size:46
Alignment explanation
Indices: 74586436--74586557 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 46
74586426 TGTAGCCAAC
* * * * * *
74586436 GCATGTCCAAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCTACATCTCAAGACCGAT
*
74586482 GCATGTCCCAGACATGTCTTACACTAGCACT-CATCTCAATACCGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CTACATCTCAAGACCGAT
*
74586528 GTCATGTCCCAGACATGGTCTTACGCTAGC
1 G-CATGTCCCAGACAT-GTCTTACACTAGC
74586558 TTTCACAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
46 38 0.58
47 15 0.23
48 12 0.18
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCCTACATCTCAAGACCGAT
Found at i:74594238 original size:40 final size:40
Alignment explanation
Indices: 74594174--74594395 Score: 315
Period size: 40 Copynumber: 5.6 Consensus size: 40
74594164 TATTCGGATG
* *
74594174 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74594214 A-ATTCCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
74594254 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74594294 ATAACCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74594334 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
74594374 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
74594396 TACTTGGTTG
Statistics
Matches: 165, Mismatches: 14, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74596866 original size:37 final size:37
Alignment explanation
Indices: 74596824--74596896 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
74596814 TCAAAGCATA
74596824 ATTCATAATAAAATTTAAGCATTAATCACATGATACT
1 ATTCATAATAAAATTTAAGCATTAATCACATGATACT
74596861 ATTCATAATAAAATTTAAGCATTAATCACATGATAC
1 ATTCATAATAAAATTTAAGCATTAATCACATGATAC
74596897 AACATCACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (37 bp):
ATTCATAATAAAATTTAAGCATTAATCACATGATACT
Found at i:74600077 original size:47 final size:47
Alignment explanation
Indices: 74600010--74600347 Score: 469
Period size: 47 Copynumber: 7.1 Consensus size: 47
74600000 TCGGGACTTG
* * * * * ** * *
74600010 TCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
74600057 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
** *
74600104 TCACGCATATACACTTTCACATTCATCACATTGGCCATTAAGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
* * *
74600151 TCACATATATATACACTTTCACATTCATCACATCGACTATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
* *
74600200 TCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
*
74600247 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
*
74600296 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
74600343 TCACA
1 TCACA
74600348 ATTTAGAATT
Statistics
Matches: 261, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 176 0.67
49 85 0.33
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
Found at i:74600200 original size:96 final size:96
Alignment explanation
Indices: 74600021--74600347 Score: 505
Period size: 96 Copynumber: 3.4 Consensus size: 96
74600011 CACATTTATG
* * * ** * *
74600021 CACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
* *
74600084 ACATCGGCCATTAAGCCTTATCACGCATATA
66 ACATCGGCCATTAGGCCTTATCACACATATA
*
74600115 CACTTTCACATTCATCACATTGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
* * *
74600180 ACATCGACTATTAGGCCTTATCGCACATATA
66 ACATCGGCCATTAGGCCTTATCACACATATA
74600211 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
*
74600276 ACATCGGCCATTAGGCCTTATCACATATATA
66 ACATCGGCCATTAGGCCTTATCACACATATA
*
74600307 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACA
74600348 ATTTAGAATT
Statistics
Matches: 214, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
94 34 0.16
96 180 0.84
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (96 bp):
CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACACATATA
Found at i:74600226 original size:143 final size:142
Alignment explanation
Indices: 74600010--74600344 Score: 483
Period size: 143 Copynumber: 2.3 Consensus size: 142
74600000 TCGGGACTTG
* * * * * * * * * * *
74600010 TCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCGCACATATACACTTTC
* *
74600075 ACATTCATCACATCGGCCATTAAGCCTTATCAC-GCATATACACTTTCACATTCATCACATTGGC
66 ACATTCATCACATCGGCCATTAAGCCTTATCACAACATATACACTTTCACATTCATCACATCGGC
74600139 CATTAAGCCTTA
131 CATTAAGCCTTA
*
74600151 TCACATATATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATCGCACATATACACTT
1 TCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCGCACATATACACTT
*
74600216 TCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCACATC
64 TCACATTCATCACATCGGCCATTAAGCCTTATCACA-ACATATACACTTTCACATTCATCACATC
*
74600281 GGCCATTAGGCCTTA
128 GGCCATTAAGCCTTA
*
74600296 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 TCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATC
74600345 ACAATTTAGA
Statistics
Matches: 172, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
141 4 0.02
143 125 0.73
145 43 0.25
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (142 bp):
TCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCGCACATATACACTTTC
ACATTCATCACATCGGCCATTAAGCCTTATCACAACATATACACTTTCACATTCATCACATCGGC
CATTAAGCCTTA
Found at i:74601796 original size:13 final size:13
Alignment explanation
Indices: 74601778--74601802 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74601768 TTACTAAATT
74601778 TCATGGATTCAAG
1 TCATGGATTCAAG
74601791 TCATGGATTCAA
1 TCATGGATTCAA
74601803 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:74604285 original size:40 final size:40
Alignment explanation
Indices: 74604241--74604436 Score: 157
Period size: 40 Copynumber: 4.9 Consensus size: 40
74604231 GAATACATGT
* * * *
74604241 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
* ***
74604281 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
* *
74604321 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
* * ** * * *
74604361 CCACAAGCTC-AATTGC-CTTCGGGTCTTAACCCGGGTATAG
1 -CACCAGCACGAA-TGCTCTTCGGAACTTAGCCCGGATATAA
**
74604401 CAACTC-GCACGAATGC-CTTCGGGTCTTAGCCCGGAT
1 C-AC-CAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
74604437 GTATCAACTT
Statistics
Matches: 125, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
39 1 0.01
40 112 0.90
41 12 0.10
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAA
Found at i:74604445 original size:40 final size:40
Alignment explanation
Indices: 74604374--74604968 Score: 937
Period size: 40 Copynumber: 14.9 Consensus size: 40
74604364 CAAGCTCAAT
* * * *
74604374 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
* *
74604414 TGCCTTCGGGTCTTAGCCCGGATGTATCAACTT-GCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAA-TTCGCACAAA
*
74604454 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
* * *
74604494 TGCCTTCGGGTCTTATCCTGGATATATCAATTCGCGCAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
* *
74604534 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
*
74604574 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
* *
74604614 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
74604654 TGCCTTCGGGTCTT-A-CC-GATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
*
74604691 TGCCTTCGGGTCTTAACCCGAATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
*
74604731 TGCCTTCGGGTCTTAACTCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
*
74604771 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
** * *
74604811 TGCCTTTAGGTCTTAGCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
*
74604851 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
74604891 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
*
74604931 TGCCTTCGGGTCTTAACCCGGATATATCAATTTGCACA
1 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACA
74604969 CATAGTGCTT
Statistics
Matches: 515, Mismatches: 35, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
37 34 0.07
38 3 0.01
39 4 0.01
40 473 0.92
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
Found at i:74605025 original size:29 final size:29
Alignment explanation
Indices: 74604986--74605064 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
74604976 CTTAATAATC
*
74604986 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
74605016 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
74605045 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74605065 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:74605107 original size:43 final size:43
Alignment explanation
Indices: 74605046--74605176 Score: 228
Period size: 43 Copynumber: 3.0 Consensus size: 43
74605036 TGCATTTCAA
* *
74605046 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
74605089 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACA-TTGATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTT-ATT
74605132 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
74605175 GC
1 GC
74605177 TGAAAACCAA
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
42 2 0.02
43 80 0.95
44 2 0.02
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
Found at i:74607091 original size:37 final size:37
Alignment explanation
Indices: 74607041--74607119 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
74607031 TTATTACGAA
* *
74607041 GTCTTACCCGGACATAATCTCCACACGAAGAT-ATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAG-TCATCGG
*
74607078 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
74607115 GTCTT
1 GTCTT
74607120 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:74607413 original size:49 final size:47
Alignment explanation
Indices: 74607237--74607531 Score: 401
Period size: 47 Copynumber: 6.2 Consensus size: 47
74607227 CCCTTCGGGA
* * * * * **
74607237 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74607284 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
** *
74607331 CTTATCACGCATATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74607378 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
74607427 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
74607474 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
74607523 CTTATCACA
1 CTTATCACA
74607532 ATTTAGAATT
Statistics
Matches: 218, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
47 132 0.61
49 86 0.39
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:74607432 original size:96 final size:95
Alignment explanation
Indices: 74607237--74607531 Score: 439
Period size: 96 Copynumber: 3.1 Consensus size: 95
74607227 CCCTTCGGGA
** * * * ** * *
74607237 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAAGCCTTATCACAATATATACA
*
74607301 CTTTCACATTCATCACATCGGCCATTAAGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
74607331 CTTATCACGCATATACACTTTCACATTCATCACATTGGCCATTAAGCCTTATCACAAATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAAGCCTTATCAC-AATATATAC
*
74607396 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
74607427 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAAGCCTTATCACA-ATATATAC
74607492 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
74607523 CTTATCACA
1 CTTATCACA
74607532 ATTTAGAATT
Statistics
Matches: 181, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
94 45 0.25
95 1 0.01
96 135 0.75
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAAGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74608980 original size:13 final size:13
Alignment explanation
Indices: 74608962--74608986 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74608952 TACTAAATTT
74608962 TCATGGATTCAAG
1 TCATGGATTCAAG
74608975 TCATGGATTCAA
1 TCATGGATTCAA
74608987 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:74620833 original size:44 final size:43
Alignment explanation
Indices: 74620758--74620909 Score: 123
Period size: 43 Copynumber: 3.5 Consensus size: 43
74620748 GATATGTGTC
* ** * *
74620758 TTTGTGCAAGACCACATCTGGGACGTTGGCATCAACT-TCTGTT
1 TTTGTGTAAGACCATGTCTGGGAC-ATGGCATCAACTATCTGAT
*
74620801 TTATGTGTAAGACCATGTCTGGGACATCGGCATC--GTATCTGAT
1 TT-TGTGTAAGACCATGTCTGGGACAT-GGCATCAACTATCTGAT
* * *
74620844 TTTGTGTAAGACCCTGTCTGGGACAATGGCATCAA-TGTTTGAT
1 TTTGTGTAAGACCATGTCTGGGAC-ATGGCATCAACTATCTGAT
*** *
74620887 TGCATGTAAGACCACGTCTGGGA
1 TTTGTGTAAGACCATGTCTGGGA
74620910 TGTTGGCATT
Statistics
Matches: 89, Mismatches: 14, Indels: 12
0.77 0.12 0.10
Matches are distributed among these distances:
42 28 0.31
43 36 0.40
44 25 0.28
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (43 bp):
TTTGTGTAAGACCATGTCTGGGACATGGCATCAACTATCTGAT
Found at i:74620862 original size:42 final size:43
Alignment explanation
Indices: 74620795--74620876 Score: 123
Period size: 42 Copynumber: 1.9 Consensus size: 43
74620785 GGCATCAACT
*
74620795 TCTGTTTTATGTGTAAGACCATGTCTGGGAC-ATCGGCATCGTA
1 TCTGATTTATGTGTAAGACCATGTCTGGGACAAT-GGCATCGTA
*
74620838 TCTGATTT-TGTGTAAGACCCTGTCTGGGACAATGGCATC
1 TCTGATTTATGTGTAAGACCATGTCTGGGACAATGGCATC
74620877 AATGTTTGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 27 0.75
43 9 0.25
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.34
Consensus pattern (43 bp):
TCTGATTTATGTGTAAGACCATGTCTGGGACAATGGCATCGTA
Found at i:74623937 original size:79 final size:82
Alignment explanation
Indices: 74623826--74624010 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
74623816 GCTACTCGTT
* *
74623826 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
74623889 GGATTTAGTAAC-TCGCA
65 GGATGTAGTAACTTAGCA
* **
74623906 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
74623969 GATGTGGTCACTTAGCA
66 GATGTAGTAACTTAGCA
74623986 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74624011 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATGTAGTAACTTAGCA
Found at i:74624010 original size:40 final size:39
Alignment explanation
Indices: 74623826--74624010 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 39
74623816 GCTACTCGTT
* *
74623826 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
74623866 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
74623906 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCA
* * * *
74623945 CAAATGCCTTC-GGATCTTAGTCCGGATGTGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
74623986 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74624011 CATCATTCAA
Statistics
Matches: 127, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 79 0.62
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:74650854 original size:28 final size:29
Alignment explanation
Indices: 74650822--74650883 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
74650812 TACATATATA
*
74650822 CATATGACCCACTAGGCCC-AATCTCATT
1 CATATGACCCACTAGGCCCAAATCACATT
* *
74650850 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGACCCACTAGGCCCAAATCACATT
74650879 CATAT
1 CATAT
74650884 TCATGCTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.31, C:0.32, G:0.11, T:0.26
Consensus pattern (29 bp):
CATATGACCCACTAGGCCCAAATCACATT
Found at i:74652261 original size:28 final size:28
Alignment explanation
Indices: 74652221--74652277 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
74652211 CACAATTAAC
74652221 TATAAGGCTTATGTGCCTAAGCCTCAGT
1 TATAAGGCTTATGTGCCTAAGCCTCAGT
74652249 TATAAGGCTTATGTGCCTAAGCCTCAGT
1 TATAAGGCTTATGTGCCTAAGCCTCAGT
74652277 T
1 T
74652278 CTCTTAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (28 bp):
TATAAGGCTTATGTGCCTAAGCCTCAGT
Found at i:74661147 original size:47 final size:47
Alignment explanation
Indices: 74661094--74661269 Score: 227
Period size: 47 Copynumber: 3.8 Consensus size: 47
74661084 TTCAGATATT
74661094 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAAC
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAAC
* * *
74661141 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAAC
*
74661192 ---G--TTCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAAC
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAAC
* *
74661234 TAGGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCA
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
74661270 CTTATGGATG
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 28 0.25
47 62 0.56
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (47 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAAC
Found at i:74661220 original size:46 final size:46
Alignment explanation
Indices: 74661147--74661322 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74661137 TAACTAGGCA
74661147 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
74661193 TTCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
74661238 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
74661286 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74661323 GCAAGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 62 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:74661261 original size:93 final size:93
Alignment explanation
Indices: 74661101--74661314 Score: 392
Period size: 93 Copynumber: 2.3 Consensus size: 93
74661091 ATTTAGGCAT
74661101 CCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
*
74661166 GTCCGAGTTCACTTATGGATGCGAACGT
66 GTCCGAGTTCACTTATGGATGCGAACGC
* *
74661194 TCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAGCTTGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
74661259 GTCCGAGTTCACTTATGGATGCGAACGC
66 GTCCGAGTTCACTTATGGATGCGAACGC
*
74661287 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
74661315 GCTTATGGGC
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 116 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
GTCCGAGTTCACTTATGGATGCGAACGC
Found at i:74666804 original size:46 final size:46
Alignment explanation
Indices: 74666752--74667017 Score: 206
Period size: 46 Copynumber: 5.7 Consensus size: 46
74666742 TTGGGCATCC
*
74666752 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
* * * * * * * *
74666798 GAACTCGTTGAGTTGAGTCCGAG--CCCGTGA-GATATAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCAC-TTATG-GAT-GCGA-ACGTCT
* * *
74666845 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
* * * *
74666891 AAACTCGTTGAGTTGAGTCCGAG-T--C-TGTGAGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---G--TCT
* *
74666938 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
* *
74666984 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74667018 GCGGGTTACA
Statistics
Matches: 169, Mismatches: 33, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
42 6 0.04
43 5 0.03
44 3 0.02
45 6 0.04
46 81 0.48
47 48 0.28
48 6 0.04
49 3 0.02
50 5 0.03
51 6 0.04
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
Found at i:74666961 original size:47 final size:47
Alignment explanation
Indices: 74666801--74666961 Score: 163
Period size: 47 Copynumber: 3.4 Consensus size: 47
74666791 AACGTCTGAA
* * *
74666801 CTCGTTGAGTTGAGTCCGAGCCCGTGAGATATAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTCTGTGAGATGTAACTAGGCATCCGAG
* * ** *
74666848 CTCGTTGAGTTGAGTCTGAGTTCACTTATG-GATGTGAAC---G--TCTAAA
1 CTCGTTGAGTTGAGTCCGAG-T--C-TGTGAGATGT-AACTAGGCATCCGAG
74666894 CTCGTTGAGTTGAGTCCGAGTCTGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTCTGTGAGATGTAACTAGGCATCCGAG
74666941 CTCGTTGAGTTGAGTCCGAGT
1 CTCGTTGAGTTGAGTCCGAGT
74666962 TCACTTATGG
Statistics
Matches: 90, Mismatches: 13, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
42 6 0.07
43 6 0.07
45 2 0.02
46 22 0.24
47 43 0.48
48 1 0.01
50 5 0.06
51 5 0.06
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTCTGTGAGATGTAACTAGGCATCCGAG
Found at i:74667007 original size:93 final size:93
Alignment explanation
Indices: 74666745--74667007 Score: 436
Period size: 93 Copynumber: 2.8 Consensus size: 93
74666735 CGGGTATTTG
* *
74666745 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
*
74666810 TTGAGTCCGAGCCCGTGAGATATAACTA
66 TTGAGTCCGAGTCCGTGAGATATAACTA
* * *
74666838 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGTCTAAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
* *
74666903 TTGAGTCCGAGTCTGTGAGATGTAACTA
66 TTGAGTCCGAGTCCGTGAGATATAACTA
* *
74666931 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
74666996 TTGAGTCCGAGT
66 TTGAGTCCGAGT
74667008 TCGCTTATGG
Statistics
Matches: 157, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 157 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
TTGAGTCCGAGTCCGTGAGATATAACTA
Found at i:74679997 original size:18 final size:18
Alignment explanation
Indices: 74679971--74680017 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
74679961 TATTTCACTC
* *
74679971 TCTTTTTCTTTTTTGCTT
1 TCTTTTTCTTTTTCGATT
*
74679989 TCTTATTCTTTTTCGATT
1 TCTTTTTCTTTTTCGATT
74680007 TCTTTTTCTTT
1 TCTTTTTCTTT
74680018 CATTTTTCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.74
Consensus pattern (18 bp):
TCTTTTTCTTTTTCGATT
Found at i:74693723 original size:20 final size:21
Alignment explanation
Indices: 74693700--74693738 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
74693690 CATATCAAAT
74693700 AAATAAC-ATTAAGTTACTTA
1 AAATAACAATTAAGTTACTTA
* *
74693720 AAATGACAATTATGTTACT
1 AAATAACAATTAAGTTACT
74693739 ACATTTACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (21 bp):
AAATAACAATTAAGTTACTTA
Found at i:74697567 original size:20 final size:20
Alignment explanation
Indices: 74697542--74697604 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
74697532 CAAAAATAAG
74697542 GGCACACGCTCGTGCCTCCA
1 GGCACACGCTCGTGCCTCCA
74697562 GGCACACGCTCGTGCCTCCA
1 GGCACACGCTCGTGCCTCCA
* * *
74697582 GGCACATGTTCATGCCTCCA
1 GGCACACGCTCGTGCCTCCA
74697602 GGC
1 GGC
74697605 TATGTCCCTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.16, C:0.41, G:0.25, T:0.17
Consensus pattern (20 bp):
GGCACACGCTCGTGCCTCCA
Found at i:74715624 original size:27 final size:27
Alignment explanation
Indices: 74715594--74715771 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
74715584 ATATTGAGCC
* *
74715594 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
74715621 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
74715648 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
74715676 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
74715703 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
74715730 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
74715757 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
74715772 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Done.