Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 227 of 356
Found at i:74715733 original size:82 final size:81
Alignment explanation
Indices: 74715615--74715770 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
74715605 TGCTATATAA
* * * *
74715615 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
74715680 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74715697 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
74715761 CCCTTAGTGC
65 CACTTAGTGC
74715771 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74720839 original size:53 final size:53
Alignment explanation
Indices: 74720741--74720946 Score: 209
Period size: 55 Copynumber: 3.8 Consensus size: 53
74720731 ACGCGGGTAC
* * * *
74720741 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTA-CCTTGCCTTATGAAA
* * *
74720794 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTACC-TTGCCTTAT-GAAA
* * * * *
74720849 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATG-GTACCTTGCCTTATGAAA
* *
74720902 CCTTACCAATTCCCATGCCTTGGTATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTA-CCTT
74720947 AGACCCTAAT
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
52 2 0.02
53 44 0.35
54 9 0.07
55 68 0.54
56 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTACCTTGCCTTATGAAA
Found at i:74728410 original size:53 final size:54
Alignment explanation
Indices: 74728327--74728537 Score: 257
Period size: 55 Copynumber: 3.9 Consensus size: 54
74728317 GGTATCGTTT
* *
74728327 TGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTAGCCTTA
1 TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * *
74728381 TG-AACTCACCAATGCCATGTCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTA
1 TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTA
* * * * *
74728434 TAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTA
1 T-GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* *
74728489 -GAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TGAAA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
74728538 AAACCCTAAT
Statistics
Matches: 132, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 47 0.36
54 10 0.08
55 72 0.55
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:74728474 original size:108 final size:110
Alignment explanation
Indices: 74728330--74728530 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
74728320 ATCGTTTTGA
* *
74728330 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTAGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTAGCCTTA-GAAACCTCACCAA
*
74728393 -TGCCATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * * *
74728438 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTAGCCTTAGAAACCTCACCAAT
74728503 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
74728531 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 7 0.09
110 27 0.33
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTAGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:74730378 original size:40 final size:40
Alignment explanation
Indices: 74730323--74730539 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 40
74730313 GGATGATAAT
* **
74730323 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCAA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATA-TC
* * *
74730363 CGGGCTAAGCCCCGAAGGCATTTGTTCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATATC
* * *
74730403 CGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATATC
* *
74730443 CGGGCTAAGTCCTC-AAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACAATATC
* *
74730483 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CAATATC
*
74730523 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
74730540 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 18 0.11
40 138 0.87
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATATC
Found at i:74738445 original size:40 final size:40
Alignment explanation
Indices: 74738390--74738606 Score: 260
Period size: 40 Copynumber: 5.5 Consensus size: 40
74738380 GGATGATAAT
* * *
74738390 CGGGCTACGTCCCGAAGGCATTTGTGCTAGTGACAA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATA-TC
* * *
74738430 CGGGCTAAGCCCCGAAGGCATTTGTTCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATATC
* *
74738470 CGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATATC
* * *
74738510 CGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATATC
* * *
74738550 CGGGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CAATATC
*
74738590 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
74738607 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 16 0.10
40 140 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATATC
Found at i:74738527 original size:80 final size:80
Alignment explanation
Indices: 74738385--74738606 Score: 297
Period size: 80 Copynumber: 2.8 Consensus size: 80
74738375 TATTCGGATG
* * * * * * *
74738385 ATAATCGGGCTACGTCCCGAAGGCATTTGTGCTAGTGAC-AAATTCCGGGCTAAGCCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
*
74738449 ATTTGTTCGAGTTACT
65 ATTTGTGCGAGTTACT
* *
74738465 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCTGAAGGCA
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
74738530 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* *
74738545 ATAACCGGGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
74738607 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
79 16 0.13
80 108 0.86
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:74749544 original size:24 final size:23
Alignment explanation
Indices: 74749512--74749587 Score: 100
Period size: 24 Copynumber: 3.3 Consensus size: 23
74749502 TACCGATATA
74749512 TCAGCTCGTAAGAGCTTACTGTT
1 TCAGCTCGTAAGAGCTTACTGTT
* *
74749535 CTCAGCTCGTATGGGCTTACTG-T
1 -TCAGCTCGTAAGAGCTTACTGTT
* *
74749558 TCAGCTCGTTAGAGCTTACTATT
1 TCAGCTCGTAAGAGCTTACTGTT
74749581 TCAGCTC
1 TCAGCTC
74749588 AATGCTTACT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 17 0.38
23 9 0.20
24 19 0.42
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (23 bp):
TCAGCTCGTAAGAGCTTACTGTT
Found at i:74749572 original size:46 final size:42
Alignment explanation
Indices: 74749512--74749602 Score: 119
Period size: 46 Copynumber: 2.1 Consensus size: 42
74749502 TACCGATATA
* *
74749512 TCAGCTCGTAAGAGCTTACTGTTCTCAGCTCGTATGGGCTTACTGT
1 TCAGCTCGTAAGAGCTTACTATT-TCAGCTC-AAT--GCTTACTGT
*
74749558 TCAGCTCGTTAGAGCTTACTATTTCAGCTCAATGCTTACTGT
1 TCAGCTCGTAAGAGCTTACTATTTCAGCTCAATGCTTACTGT
74749600 TCA
1 TCA
74749603 TTAGCTTAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
42 12 0.29
44 2 0.05
45 7 0.17
46 21 0.50
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (42 bp):
TCAGCTCGTAAGAGCTTACTATTTCAGCTCAATGCTTACTGT
Found at i:74756406 original size:30 final size:30
Alignment explanation
Indices: 74756372--74756434 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
74756362 TTATATGGGA
74756372 TCTCGTATCATGCCAATAGCCCAGCTATGG
1 TCTCGTATCATGCCAATAGCCCAGCTATGG
74756402 TCTCGTATCATGCCAATAGCCCAGCTATGG
1 TCTCGTATCATGCCAATAGCCCAGCTATGG
74756432 TCT
1 TCT
74756435 TATAGAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (30 bp):
TCTCGTATCATGCCAATAGCCCAGCTATGG
Found at i:74759331 original size:64 final size:64
Alignment explanation
Indices: 74759250--74759433 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
74759240 AGACATTATG
* * * *
74759250 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
74759314 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTAAAGGACCCCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGT---GTACACCATGTAGACAAGAGAGCTACGAGAT
74759379 AA
63 AA
* *
74759381 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
74759434 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 26 0.26
66 22 0.22
67 30 0.30
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74763108 original size:13 final size:13
Alignment explanation
Indices: 74763090--74763114 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74763080 TGTGTCACAC
74763090 ACGACTGAGACAT
1 ACGACTGAGACAT
74763103 ACGACTGAGACA
1 ACGACTGAGACA
74763115 CATGCCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.24, T:0.12
Consensus pattern (13 bp):
ACGACTGAGACAT
Found at i:74765866 original size:26 final size:26
Alignment explanation
Indices: 74765814--74765866 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
74765804 CCATCACACC
* * **
74765814 AATATTGCAGCAAAGCTGCTAGCAAT
1 AATAATGCAGCAAAGCTGCCAAAAAT
*
74765840 AATAATGCAGCATAGCTGCCAAAAAT
1 AATAATGCAGCAAAGCTGCCAAAAAT
74765866 A
1 A
74765867 GTAAATGTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (26 bp):
AATAATGCAGCAAAGCTGCCAAAAAT
Found at i:74765896 original size:27 final size:26
Alignment explanation
Indices: 74765866--74765949 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
74765856 TGCCAAAAAT
*
74765866 AGTAAATGTGGCAAAGCCACCAGTATC
1 AGTAAATGTGGCATAGCCACCAGTA-C
*
74765893 AGTAATTGTGGCATAGCCACCAGTAAC
1 AGTAAATGTGGCATAGCCACCAGT-AC
* * *
74765920 AGTTAATGTGACATAGTCACCAGTAC
1 AGTAAATGTGGCATAGCCACCAGTAC
74765946 AGTA
1 AGTA
74765950 CTTCTTCCAT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.10
27 43 0.88
28 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (26 bp):
AGTAAATGTGGCATAGCCACCAGTAC
Found at i:74772092 original size:22 final size:22
Alignment explanation
Indices: 74772061--74772107 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
74772051 CCATGGATGT
* *
74772061 ATTATGCCAATATAATTTATTG
1 ATTATACCAATATAATTGATTG
74772083 ATTATACCAATATAATTGATTG
1 ATTATACCAATATAATTGATTG
74772105 ATT
1 ATT
74772108 GTGTGAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (22 bp):
ATTATACCAATATAATTGATTG
Found at i:74772134 original size:22 final size:22
Alignment explanation
Indices: 74772091--74772134 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
74772081 TGATTATACC
* * *
74772091 AATATAATTGATTGATTGTGTG
1 AATAGAATTGAATGATTATGTG
*
74772113 AATAGAATTGAATGTTTATGTG
1 AATAGAATTGAATGATTATGTG
74772135 TTAAAAGATG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (22 bp):
AATAGAATTGAATGATTATGTG
Found at i:74774264 original size:25 final size:25
Alignment explanation
Indices: 74774236--74774287 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
74774226 ATCATTTGTC
* *
74774236 TCAAACTTTCGTATAAATATGTCAT
1 TCAAACTTTCCTATAAACATGTCAT
74774261 TCAAACTTTCCTATAAACATGTCAT
1 TCAAACTTTCCTATAAACATGTCAT
74774286 TC
1 TC
74774288 TTAAATCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (25 bp):
TCAAACTTTCCTATAAACATGTCAT
Found at i:74774706 original size:19 final size:19
Alignment explanation
Indices: 74774668--74774734 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 19
74774658 GCATCATGGA
*
74774668 TGCATAACAAGGGCATCAAAG
1 TGCA-AACAGGGGCA-CAAAG
*
74774689 TGCAAACAGGGGCACAAATA
1 TGCAAACAGGGGCACAAA-G
*
74774709 TGCAAATAGGGGCACAATAG
1 TGCAAACAGGGGCACAA-AG
74774729 TGCAAA
1 TGCAAA
74774735 TAGAGACACC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 4 0.10
20 31 0.77
21 5 0.12
ACGTcount: A:0.43, C:0.18, G:0.25, T:0.13
Consensus pattern (19 bp):
TGCAAACAGGGGCACAAAG
Found at i:74774735 original size:20 final size:20
Alignment explanation
Indices: 74774678--74774737 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
74774668 TGCATAACAA
*
74774678 GGGCATCAA-AGTGCAAACAG
1 GGGCA-CAATAGTGCAAATAG
74774698 GGGCACAAATA-TGCAAATAG
1 GGGCAC-AATAGTGCAAATAG
74774718 GGGCACAATAGTGCAAATAG
1 GGGCACAATAGTGCAAATAG
74774738 AGACACCGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 5 0.14
20 30 0.83
21 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.28, T:0.13
Consensus pattern (20 bp):
GGGCACAATAGTGCAAATAG
Found at i:74774750 original size:20 final size:20
Alignment explanation
Indices: 74774727--74774775 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
74774717 GGGGCACAAT
74774727 AGTGCAAATAGAGACACCGA
1 AGTGCAAATAGAGACACCGA
* * * * *
74774747 AGTGTATATAGGGGCATCGA
1 AGTGCAAATAGAGACACCGA
74774767 AGTGCAAAT
1 AGTGCAAAT
74774776 CTCGTACAAG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.39, C:0.14, G:0.29, T:0.18
Consensus pattern (20 bp):
AGTGCAAATAGAGACACCGA
Found at i:74781559 original size:20 final size:20
Alignment explanation
Indices: 74781534--74781574 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
74781524 AAATGTTAAG
* *
74781534 TAAAGATGTTGAGTTAATTT
1 TAAAGATGTTAAGTCAATTT
74781554 TAAAGATGTTAAGTCAATTT
1 TAAAGATGTTAAGTCAATTT
74781574 T
1 T
74781575 CCGTGAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (20 bp):
TAAAGATGTTAAGTCAATTT
Found at i:74788979 original size:136 final size:138
Alignment explanation
Indices: 74788661--74789018 Score: 567
Period size: 138 Copynumber: 2.6 Consensus size: 138
74788651 TAGAACAAGG
* *
74788661 AATTATGTTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAA-TAA
* * * *
74788726 TATAACTGTTTATATTAGTGAATTCGATAAACTATATACAATTAATATTTTGTATGAATCAAATT
65 TATAACTGTTTATATTAATAAATTCGATAAAATATATACAACTAATATTTTGTATGAATCAAATT
74788791 CATATATATT
130 CA-ATATATT
*
74788801 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTTTTTTATATTTTGACCGAAATTAA-AAT
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATAAT
* *
74788865 ATAACTGTTTATATTAATAAATTCGGTAAAATATATACAACTAATATTTTGTATTAATCAAATTC
66 ATAACTGTTTATATTAATAAATTCGATAAAATATATACAACTAATATTTTGTATGAATCAAATTC
74788930 -ATATATT
131 AATATATT
* *
74788937 AATTATATTCTTTCCAAAATAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAA-TAA
*
74789002 TATAATTGTTTATATTA
65 TATAACTGTTTATATTA
74789019 TATACAATAA
Statistics
Matches: 203, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
136 65 0.32
138 80 0.39
140 58 0.29
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATAAT
ATAACTGTTTATATTAATAAATTCGATAAAATATATACAACTAATATTTTGTATGAATCAAATTC
AATATATT
Found at i:74789035 original size:121 final size:121
Alignment explanation
Indices: 74788896--74789139 Score: 364
Period size: 121 Copynumber: 2.0 Consensus size: 121
74788886 TTCGGTAAAA
* * * *
74788896 TATATACAACTAATATTTTGTATTAATCAAATTCATATATTAATTATATTCTTTCCAAAATAATA
1 TATATACAACTAATATTTTATATGAATCAAATTCATATATTAATTATATTCTTGCCAAAAGAATA
* * ** * *
74788961 TTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAATATAATTGTTTATAT
66 TTAATTTCCATATCTTTTATATTTTGACCAAAATTAATTAATATAACTATTTATAT
*
74789017 TATATACAA-TAAATATTTTATATGAATCAAATTCATATATTGATTATATTCTTGCCAAAAGAAT
1 TATATACAACT-AATATTTTATATGAATCAAATTCATATATTAATTATATTCTTGCCAAAAGAAT
*
74789081 ATTAATTTCCATATCTTTTATATTTTGACCAAAATTTATTAATATAACTATTTATAT
65 ATTAATTTCCATATCTTTTATATTTTGACCAAAATTAATTAATATAACTATTTATAT
74789138 TA
1 TA
74789140 ATAAATTCAA
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
120 1 0.01
121 109 0.99
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (121 bp):
TATATACAACTAATATTTTATATGAATCAAATTCATATATTAATTATATTCTTGCCAAAAGAATA
TTAATTTCCATATCTTTTATATTTTGACCAAAATTAATTAATATAACTATTTATAT
Found at i:74789217 original size:259 final size:258
Alignment explanation
Indices: 74788758--74789237 Score: 764
Period size: 259 Copynumber: 1.9 Consensus size: 258
74788748 TTCGATAAAC
* * *
74788758 TATATACAATTAATATTTTGTATGAATCAAATTCATATATATTAATTATATTCTTTCCAAAAGAA
1 TATATACAATAAATATTTTATATGAATCAAATTCA-ATATATTAATTATATTCTTGCCAAAAGAA
* * * * *
74788823 TATTAATTTTCATGTTTTTTATATTTTGACCGAAATTAAAATATAACTGTTTATATTAATAAATT
65 TATTAATTTCCATATCTTTTATATTTTGACCAAAATTAAAATATAACTATTTATATTAATAAATT
** * *
74788888 CGGTAAAATATATACAACTAATATTTTGTATTAATCAAATTCATATATTAATTATATTCTTTCCA
130 CAATAAAATATATACAACTAATATTTCGTATAAATCAAATTCATATATTAATTATATTCTTTCCA
*
74788953 AAATAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAATATAATTGTTTATAT
195 AAATAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATATAATTGTTTATAT
*
74789017 TATATACAATAAATATTTTATATGAATCAAATTC-ATATATTGATTATATTCTTGCCAAAAGAAT
1 TATATACAATAAATATTTTATATGAATCAAATTCAATATATTAATTATATTCTTGCCAAAAGAAT
*
74789081 ATTAATTTCCATATCTTTTATATTTTGACCAAAATTTATTAATATAACTATTTATATTAATAAAT
66 ATTAATTTCCATATCTTTTATATTTTGACCAAAA-TTA-AAATATAACTATTTATATTAATAAAT
* * *
74789146 TCAATAAAATGTATACAATTAATATTTCGTATAAATCAAATTCATATATTAATTTTATTCTTTCC
129 TCAATAAAATATATACAACTAATATTTCGTATAAATCAAATTCATATATTAATTATATTCTTTCC
74789211 AAAATAATATTAATTTCCATGTCTTTT
194 AAAATAATATTAATTTCCATGTCTTTT
74789238 TTATACGAGC
Statistics
Matches: 201, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
257 58 0.29
258 3 0.01
259 140 0.70
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.46
Consensus pattern (258 bp):
TATATACAATAAATATTTTATATGAATCAAATTCAATATATTAATTATATTCTTGCCAAAAGAAT
ATTAATTTCCATATCTTTTATATTTTGACCAAAATTAAAATATAACTATTTATATTAATAAATTC
AATAAAATATATACAACTAATATTTCGTATAAATCAAATTCATATATTAATTATATTCTTTCCAA
AATAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATATAATTGTTTATAT
Found at i:74790614 original size:46 final size:46
Alignment explanation
Indices: 74790564--74790739 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
74790554 TGGTTGAGCA
74790564 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
74790610 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
74790655 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74790703 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCTCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74790740 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74790720 original size:93 final size:93
Alignment explanation
Indices: 74790561--74790731 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74790551 GGATGGTTGA
* *
74790561 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
74790626 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
74790654 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74790719 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74790732 TCTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74812335 original size:21 final size:21
Alignment explanation
Indices: 74812311--74812350 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
74812301 TTTAATCTGC
74812311 CTTTTATTATC-TTTACCATAT
1 CTTTTATT-TCTTTTACCATAT
*
74812332 CTTTTGTTTCTTTTACCAT
1 CTTTTATTTCTTTTACCAT
74812351 TTTTGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.17, C:0.20, G:0.03, T:0.60
Consensus pattern (21 bp):
CTTTTATTTCTTTTACCATAT
Found at i:74822517 original size:40 final size:40
Alignment explanation
Indices: 74822315--74822503 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
74822305 ATTCGGATTG
*
74822315 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74822355 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74822395 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74822435 ATAACCGGGCTAGGTCCGGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74822475 ATAACCGGGCTAAGTCCTGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
74822504 AGCTAGTAGC
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74822536 original size:39 final size:40
Alignment explanation
Indices: 74822315--74822536 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 40
74822305 ATTCGGATTG
* ** *
74822315 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAACTCCTGAAGGCATTTGAGCGAGTTACT
* ** * *
74822355 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAACTCCTGAAGGCATTTGAGCGAGTTACT
* * * * *
74822395 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAACTCCTGAAGGCATTTGAGCGAGTTACT
** * *
74822435 ATAACCGGGCTAGGTCCGGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAACTCCTGAAGGCATTTGAGCGAGTTACT
* *
74822475 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCTAG-TAGCT
1 ATAACCGGGCTAACTCCTGAAGGCATTTGAGCGAGTTA-CT
*
74822515 ATATCC-GGCTAAACTCC-GAAGG
1 ATAACCGGGCT-AACTCCTGAAGG
74822537 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 11 0.07
40 154 0.93
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAACTCCTGAAGGCATTTGAGCGAGTTACT
Found at i:74824946 original size:80 final size:78
Alignment explanation
Indices: 74824676--74824972 Score: 314
Period size: 80 Copynumber: 3.7 Consensus size: 78
74824666 TGAATGATGT
* * * * * **
74824676 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTT
* *
74824740 GTGCGAGATACTAATT
64 GTGCGAGTTACTAA-A
* * **
74824756 TCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATTCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTTG
74824820 TGCGAGTTACTAAA
65 TGCGAGTTACTAAA
* *
74824834 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTT
74824899 GTGCGAGTTACTATAA
64 GTGCGAGTTACTA-AA
* * * *
74824915 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
74824973 TACGTGATTT
Statistics
Matches: 189, Mismatches: 21, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
79 75 0.40
80 112 0.59
81 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:74824946 original size:120 final size:118
Alignment explanation
Indices: 74824728--74824972 Score: 307
Period size: 120 Copynumber: 2.1 Consensus size: 118
74824718 GGACTAAGAT
* *
74824728 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
* ** *
74824793 ATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* * *
74824847 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTA
* * * *
74824912 TAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
65 -AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
74824966 CCGAAGG
1 CCGAAGG
74824973 TACGTGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
119 51 0.47
120 56 0.51
121 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
ATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:74824953 original size:40 final size:40
Alignment explanation
Indices: 74824675--74824939 Score: 333
Period size: 40 Copynumber: 6.7 Consensus size: 40
74824665 TTGAATGATG
* * * *
74824675 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
74824715 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74824755 TTCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74824794 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74824834 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74824874 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74824915 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74824940 AACGAGTAGC
Statistics
Matches: 199, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
39 35 0.18
40 154 0.77
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74833825 original size:40 final size:40
Alignment explanation
Indices: 74833623--74833811 Score: 324
Period size: 40 Copynumber: 4.7 Consensus size: 40
74833613 ATTCGGATTG
74833623 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74833663 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
74833703 ATATCCGGGCTAAGTCCCGAAGGCATTCGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74833743 ATAACCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74833783 ATAACAGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
74833812 AGCTAGTAGC
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74836802 original size:28 final size:28
Alignment explanation
Indices: 74836722--74836807 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
74836712 GTGAGCATGA
* * *
74836722 ATATGAATGTGACTGGGCCTAACGGTCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
74836750 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
74836779 ATATGAATCTGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
74836807 A
1 A
74836808 GATACAGGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:74840479 original size:15 final size:15
Alignment explanation
Indices: 74840459--74840489 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
74840449 AAGAGGATAG
74840459 TAACGTTCCTTTAAT
1 TAACGTTCCTTTAAT
74840474 TAACGTTCCTTTAAT
1 TAACGTTCCTTTAAT
74840489 T
1 T
74840490 CTAGACAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (15 bp):
TAACGTTCCTTTAAT
Found at i:74848862 original size:49 final size:49
Alignment explanation
Indices: 74848796--74849040 Score: 258
Period size: 49 Copynumber: 4.9 Consensus size: 49
74848786 TAGCCAAAGC
* * * * *
74848796 TATCTGGTACGCATAGTAGCATGCACTTAGTACTACAGATGCGACCACT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACT
* *
74848845 TATTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC-
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC--ACT
* * * * * * * *
74848895 CATCTGATACACGTAGTAGCTTGCACTAAGTATTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-C-CACT
* * * *
74848946 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACT
* *
74848995 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
74849041 TCACAATAGA
Statistics
Matches: 161, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
49 83 0.52
50 40 0.25
51 38 0.24
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACT
Found at i:74848969 original size:101 final size:100
Alignment explanation
Indices: 74848850--74849038 Score: 279
Period size: 100 Copynumber: 1.9 Consensus size: 100
74848840 CCACTTATTT
* * *
74848850 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTAGTAGC
* *
74848915 TTGCACTAAGTATTACACACGTGATCGAAGTTATCG
65 CTGCACTAAGTACTACACACGTGATCGAAGTTATCG
* ** *
74848951 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCC
*
74849016 TGCACTTAGTACTACACACGTGA
66 TGCACTAAGTACTACACACGTGA
74849039 CCTCACAATA
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 40 0.51
101 38 0.49
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCC
TGCACTAAGTACTACACACGTGATCGAAGTTATCG
Found at i:74852603 original size:25 final size:24
Alignment explanation
Indices: 74852575--74852640 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 24
74852565 GGGAATTTTG
74852575 AAATTGATTAGAAATTAAATAATT
1 AAATTGATTAGAAATTAAATAATT
* *
74852599 AAAATTG-CTA-AGA-TAAATAATT
1 -AAATTGATTAGAAATTAAATAATT
**
74852621 AAATAAATTAGAAATTAAAT
1 AAATTGATTAGAAATTAAAT
74852641 TGGGATTTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
21 4 0.12
22 11 0.34
23 4 0.12
24 7 0.22
25 6 0.19
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.33
Consensus pattern (24 bp):
AAATTGATTAGAAATTAAATAATT
Found at i:74853493 original size:11 final size:10
Alignment explanation
Indices: 74853471--74853513 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
74853461 GCTTAATCCT
74853471 AAAATAAT-A
1 AAAATAATAA
74853480 AAAATAAATAA
1 AAAAT-AATAA
74853491 AAAATAATAA
1 AAAATAATAA
*
74853501 AAACAAAATAA
1 AAA-ATAATAA
74853512 AA
1 AA
74853514 TAAAATCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 5 0.17
10 11 0.37
11 14 0.47
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAATAATAA
Found at i:74853496 original size:20 final size:21
Alignment explanation
Indices: 74853471--74853513 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
74853461 GCTTAATCCT
*
74853471 AAAATAATAAAAA-TAAATAA
1 AAAATAATAAAAACAAAATAA
74853491 AAAATAATAAAAACAAAATAA
1 AAAATAATAAAAACAAAATAA
74853512 AA
1 AA
74853514 TAAAATCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (21 bp):
AAAATAATAAAAACAAAATAA
Found at i:74855259 original size:25 final size:25
Alignment explanation
Indices: 74855231--74855299 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 25
74855221 GTGGGGAATT
74855231 TTAAAATTGATTAGAAATTAAATAA
1 TTAAAATTGATTAGAAATTAAATAA
* * *
74855256 TTAAAACTG-CTA-AGA-TAAATAA
1 TTAAAATTGATTAGAAATTAAATAA
**
74855278 TT-AAATAAATTAGAAATTAAAT
1 TTAAAATTGATTAGAAATTAAAT
74855300 TGGGATTTCC
Statistics
Matches: 33, Mismatches: 8, Indels: 7
0.69 0.17 0.15
Matches are distributed among these distances:
21 3 0.09
22 11 0.33
23 4 0.12
24 7 0.21
25 8 0.24
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (25 bp):
TTAAAATTGATTAGAAATTAAATAA
Found at i:74856160 original size:14 final size:13
Alignment explanation
Indices: 74856131--74856167 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
74856121 CTTAATCCTA
74856131 AAATAAT-AAAAT
1 AAATAATAAAAAT
74856143 -AATAATAAATAAT
1 AAATAATAAA-AAT
74856156 AAATAATAAAAA
1 AAATAATAAAAA
74856168 CAAAACAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 6 0.27
12 2 0.09
13 5 0.23
14 9 0.41
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAATAAAAAT
Found at i:74871208 original size:39 final size:40
Alignment explanation
Indices: 74871083--74871267 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
74871073 GCTACTCGTT
* *
74871083 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
74871123 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
74871163 CCAATGCCTTCGGG-CTTAGCTCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74871202 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
74871243 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74871268 CATCATTCGA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74871251 original size:79 final size:80
Alignment explanation
Indices: 74871083--74871267 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
74871073 GCTACTCGTT
* *
74871083 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTCGGGACTTAACCCG
* *
74871147 GATTTAATAACTCGCAC
64 GATATAATAACTAGCAC
* * * **
74871164 CAATGCCTTCGGG-CTTAGCTCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
** *
74871227 ATATGGTCACTTAGCA-
65 ATATAATAAC-TAGCAC
74871243 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
74871268 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.65
80 24 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGA
TATAATAACTAGCAC
Found at i:74872542 original size:23 final size:23
Alignment explanation
Indices: 74872511--74872564 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
74872501 GATGGACACA
*
74872511 TTTTTTTTCT-TTTGTTTTCATCC
1 TTTTCTTTCTCTTTGTTTTC-TCC
*
74872534 TTTTCTTTCTCTTTTTTTTCTCC
1 TTTTCTTTCTCTTTGTTTTCTCC
*
74872557 ATTTCTTT
1 TTTTCTTT
74872565 ATTACTAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTCTTTCTCTTTGTTTTCTCC
Found at i:74874932 original size:40 final size:40
Alignment explanation
Indices: 74874895--74875119 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
74874885 GCTACTCGTT
* *
74874895 CAAATGCCTTCGGGACATAGCACGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
74874935 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
74874974 CAAATGCCTTCGGGACTTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TTAGCCCGGATTTAGTAACTCGCA
* *
74875014 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74875054 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
74875095 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74875120 CATCATTCAA
Statistics
Matches: 167, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 39 0.23
40 113 0.68
41 15 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74875006 original size:79 final size:80
Alignment explanation
Indices: 74874862--74875066 Score: 260
Period size: 79 Copynumber: 2.6 Consensus size: 80
74874852 AAATCATGTA
* **
74874862 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCACGGTTAT
1 CCTTCGG-ATCTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACATAGCACGGTTAT
74874924 AGTAACTCGCACAAATG
64 AGTAACTCGCACAAATG
* *
74874941 CCTTCGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTTA-CCCGGATT-T
1 CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC-ATAGCACGG-TTAT
74875003 AGTAACTCGCACAAATG
64 AGTAACTCGCACAAATG
** *
74875020 CCTTCGGATCTTAGTCCGGATTTAGTAACTCGTACAAATGCCTTCGG
1 CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
74875067 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 8, Indels: 11
0.85 0.06 0.08
Matches are distributed among these distances:
78 6 0.05
79 67 0.60
80 39 0.35
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAGCACGGTTATAG
TAACTCGCACAAATG
Found at i:74882942 original size:40 final size:40
Alignment explanation
Indices: 74882853--74883077 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
74882843 GCTACTCGTT
*
74882853 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
74882892 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
74882932 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
74882972 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74883012 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
74883053 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74883078 CATCATTCAA
Statistics
Matches: 170, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
39 32 0.19
40 126 0.74
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74885516 original size:21 final size:21
Alignment explanation
Indices: 74885492--74885548 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
74885482 AACTGGGCAG
74885492 ACGCCCGTGTGGTCAGGCAAC
1 ACGCCCGTGTGGTCAGGCAAC
*
74885513 ACGCCCGTGTGGTCGGGCAAC
1 ACGCCCGTGTGGTCAGGCAAC
* *
74885534 ATGCCCATGTGGTCA
1 ACGCCCGTGTGGTCA
74885549 TTACAACATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.18
Consensus pattern (21 bp):
ACGCCCGTGTGGTCAGGCAAC
Found at i:74888477 original size:43 final size:44
Alignment explanation
Indices: 74888427--74888713 Score: 274
Period size: 43 Copynumber: 6.5 Consensus size: 44
74888417 TGAATGAAGC
* *
74888427 GAAAGTGTATATAATTG-TAAGGCC-AATGGCCAACGT-AGAATGT
1 GAAAGTGTATAT-ATTGATAAGGCCTAATGGCCGATGTGAG-ATGT
*
74888470 GAGAGTGTATATATAGTGATAA-GCCTAATGGCCGATGT-ATGAATG-
1 GAAAGTGTATATAT--TGATAAGGCCTAATGGCCGATGTGA-G-ATGT
*
74888515 G-AAGCGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATAT-TGATAAGGCCTAATGGCCGATGTGA-G-ATGT
74888560 GAAAGTGTATATATTGATAAGGCCT-ATGGCCGATGTGAGATGT
1 GAAAGTGTATATATTGATAAGGCCTAATGGCCGATGTGAGATGT
*
74888603 GAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGATGT
1 GAAAGTGTATATAT-TGATAAGGCCTAATGGCCGATGTGA-GATGT
* * * *
74888649 GAAAGTGTATATATGTGA-CAGG-C-GATGGCCAACGTGATGATGT
1 GAAAGTGTATATAT-TGATAAGGCCTAATGGCCGATGTGA-GATGT
*
74888692 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATAT-TGATAAG
74888714 TCCCGAAGGG
Statistics
Matches: 217, Mismatches: 14, Indels: 25
0.85 0.05 0.10
Matches are distributed among these distances:
42 2 0.01
43 85 0.39
44 37 0.17
45 51 0.24
46 42 0.19
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (44 bp):
GAAAGTGTATATATTGATAAGGCCTAATGGCCGATGTGAGATGT
Found at i:74888581 original size:133 final size:132
Alignment explanation
Indices: 74888427--74888713 Score: 352
Period size: 133 Copynumber: 2.2 Consensus size: 132
74888417 TGAATGAAGC
* *
74888427 GAAAGTGTATATAATTG-TAAGGCCAATGGCCAACGT-AGAATGTGAGAGTGTATATATAGTGAT
1 GAAAGTGTATAT-ATTGATAAGGCCAATGGCCAACGTGAG-ATGTGAAAGCGTATATAT-GTGAT
* *
74888490 AA-GCCTAATGGCCGATGT-ATGAATG-G-AAGCGTATATATGTGATAAGCCTAATGGCCGATGT
63 AAGGCCTAATGGCCGATGTGATG-ATGTGAAAGCGTATATATGTGA-AAGCC-AATGGCCAACGT
74888551 GATGAATGT
125 GATG-ATGT
* * *
74888560 GAAAGTGTATATATTGATAAGGCCTATGGCCGATGTGAGATGTGAAAGCGTATATATGTGATAAG
1 GAAAGTGTATATATTGATAAGGCCAATGGCCAACGTGAGATGTGAAAGCGTATATATGTGATAAG
* * * *
74888625 GCCTAATGGCCGATGTGATGATGTGAAAGTGTATATATGTGACAGGCGATGGCCAACGTGATGAT
66 GCCTAATGGCCGATGTGATGATGTGAAAGCGTATATATGTGAAAGCCAATGGCCAACGTGATGAT
74888690 GT
131 GT
*
74888692 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATAT-TGATAAG
74888714 TCCCGAAGGG
Statistics
Matches: 135, Mismatches: 12, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
132 28 0.21
133 83 0.61
134 9 0.07
135 15 0.11
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (132 bp):
GAAAGTGTATATATTGATAAGGCCAATGGCCAACGTGAGATGTGAAAGCGTATATATGTGATAAG
GCCTAATGGCCGATGTGATGATGTGAAAGCGTATATATGTGAAAGCCAATGGCCAACGTGATGAT
GT
Found at i:74888651 original size:89 final size:92
Alignment explanation
Indices: 74888427--74888713 Score: 343
Period size: 89 Copynumber: 3.2 Consensus size: 92
74888417 TGAATGAAGC
* * * *
74888427 GAAAGTGTATATAAT-TG-TAAGGCC-AATGGCCAACGT-A-GAATGTGAGAGTGTATATATAGT
1 GAAAGCGTATAT-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-GT
74888487 GATAA-GCCTAATGGCCGATGT-ATGAATG-
64 GATAAGGCCT-ATGGCCGATGTGATG-ATGT
74888515 G-AAGCGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-TGA
1 GAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74888577 TAAGGCCTATGGCCGATGTGA-GATGT
66 TAAGGCCTATGGCCGATGTGATGATGT
74888603 GAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGTGA
1 GAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
74888667 -CAGG-CGATGGCCAACGTGATGATGT
66 TAAGGCCTATGGCCGATGTGATGATGT
* *
74888692 GAAAGTGTATAAATGTGATAAG
1 GAAAGCGTATATATGTGATAAG
74888714 TCCCGAAGGG
Statistics
Matches: 177, Mismatches: 10, Indels: 23
0.84 0.05 0.11
Matches are distributed among these distances:
86 2 0.01
87 17 0.10
88 45 0.25
89 71 0.40
90 42 0.24
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (92 bp):
GAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTATGGCCGATGTGATGATGT
Found at i:74888889 original size:37 final size:37
Alignment explanation
Indices: 74888833--74888911 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
74888823 CCGAGCTCTA
* *
74888833 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
74888870 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74888907 AAGAC
1 AAGAC
74888912 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74899798 original size:38 final size:38
Alignment explanation
Indices: 74899756--74899842 Score: 174
Period size: 38 Copynumber: 2.3 Consensus size: 38
74899746 ATAGACATGC
74899756 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
74899794 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
74899832 ATGTTCGGCCA
1 ATGTTCGGCCA
74899843 TAGGTAAGCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:74900532 original size:40 final size:40
Alignment explanation
Indices: 74900438--74900662 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
74900428 TATTCGAATG
* * * *
74900438 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * *
74900479 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
** *
74900519 ATATCTAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
74900559 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
74900599 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
74900639 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
74900663 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.82
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:74900610 original size:80 final size:80
Alignment explanation
Indices: 74900438--74900698 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
74900428 TATTCGAATG
* * * * *
74900438 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
74900503 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
** * * *
74900519 ATATCTAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
74900584 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * *
74900599 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
74900664 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
74900678 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
74900699 ATTTCTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 96 0.63
81 29 0.19
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:74900652 original size:120 final size:121
Alignment explanation
Indices: 74900438--74900662 Score: 305
Period size: 120 Copynumber: 1.9 Consensus size: 121
74900428 TATTCGAATG
* * *
74900438 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* *
74900503 ATTCGTGCGAGTTGCTATATCTAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCGTGCGAGTTGCCATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
74900559 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
74900622 CA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
65 CATTC-GTGCGAGTTG-CCATATCCAGGCTAAGACCCGAAGGC
74900663 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
119 5 0.05
120 55 0.60
121 31 0.34
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCCATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:74902749 original size:22 final size:23
Alignment explanation
Indices: 74902707--74902764 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
74902697 AAGCAACTTA
*
74902707 AAAATAATAATAACTAGAGAAAG
1 AAAATAATAATAACTAAAGAAAG
74902730 AAAAT-ATAAATAAC-AAAGAATA-
1 AAAATAAT-AATAACTAAAGAA-AG
*
74902752 ATAATAATAATAA
1 AAAATAATAATAA
74902765 TAATAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
22 16 0.53
23 14 0.47
ACGTcount: A:0.69, C:0.03, G:0.07, T:0.21
Consensus pattern (23 bp):
AAAATAATAATAACTAAAGAAAG
Found at i:74902756 original size:3 final size:3
Alignment explanation
Indices: 74902748--74902785 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
74902738 AATAACAAAG
74902748 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA
74902786 AGCAAACAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:74902786 original size:9 final size:10
Alignment explanation
Indices: 74902735--74902786 Score: 58
Period size: 9 Copynumber: 5.5 Consensus size: 10
74902725 GAAAGAAAAT
*
74902735 ATAAATAACA
1 ATAAATAATA
74902745 A-AGAATAATA
1 ATA-AATAATA
74902755 AT-AATAATA
1 ATAAATAATA
74902764 AT-AATAATA
1 ATAAATAATA
74902773 ATAAATAA-A
1 ATAAATAATA
74902782 ATAAA
1 ATAAA
74902787 GCAAACAATG
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
9 25 0.66
10 13 0.34
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (10 bp):
ATAAATAATA
Found at i:74905456 original size:53 final size:54
Alignment explanation
Indices: 74905372--74905867 Score: 501
Period size: 53 Copynumber: 9.3 Consensus size: 54
74905362 TAATAAAGAG
**
74905372 AAATTACCAAAATA-CCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTG-A
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
74905423 GAAATTACTGAAATACCCTCGATTTATAAAATTATCGAAATACCCTTGA-TTGTA
1 -AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
74905477 AAATTACTGAAATACCCTTGATTTGTAAAATTACCGAAATACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * **
74905531 AAATTATTGAAATACCCTCGA-TTGTGACATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * **
74905584 AAATTATTGAAATACCCTC-AATTGTGAAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
** * * * *
74905637 AAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCCA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
74905690 AAATTACTGAAATACCATCGATTTGTAAAATTACCGAAACACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
** ** * *
74905744 AAATTACCAAAATACCCTTAATTT-TTAAATTACCGAAATACCATCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * ** * *
74905797 AAATTA-TCAAAATACCCTTG-TAGTGTAAAATTACTAAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTAAAATTACCGAAATACCCTCGAT-TTGTA
* *
74905851 AAATGACTGACATACCC
1 AAATTACTGAAATACCC
74905868 CTGTTGGGTA
Statistics
Matches: 375, Mismatches: 58, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
52 14 0.04
53 256 0.68
54 104 0.28
55 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
Found at i:74905543 original size:80 final size:81
Alignment explanation
Indices: 74905381--74905841 Score: 535
Period size: 80 Copynumber: 5.8 Consensus size: 81
74905371 GAAATTACCA
74905381 AAATA-CCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTG-AGAAATTACTGAAATACCCTC
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA-AAATTACTGAAATACCCTC
* * *
74905443 GATTTATAAAATTATCG
65 AATTTGTAAAATTATTG
* * * * *
74905460 AAATACCCTTGA-TTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTACCGAAATACCCCCA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCA
74905524 ATTTGTAAAATTATTG
66 ATTTGTAAAATTATTG
* * ** *
74905540 AAATACCCTCGA-TTGTGACATTATTGAAATACCCTCGATTTGTAAAATTATTGAAATACCCTCA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCA
*
74905604 A-TTGTGAAATTATTG
66 ATTTGTAAAATTATTG
* * *
74905619 AAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCC
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCA
* *
74905684 A-TTGTGAAATTACTG
66 ATTTGTAAAATTATTG
* * * ** *
74905699 AAATACCATCGATTTGTAAAATTACCGAAACACCCTCGACTTGTAAAATTACCAAAATACCCTTA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCA
* **
74905764 ATTT-TTAAATTACCG
66 ATTTGTAAAATTATTG
* * * * * *
74905779 AAATACCATCGATTTGTAAAATTATCAAAATACCCTTG-TAGTGTAAAATTACTAAAATACCCT
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGAT-TTGTAAAATTACTGAAATACCCT
74905842 TGTAGTGTAA
Statistics
Matches: 332, Mismatches: 44, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
79 54 0.16
80 275 0.83
81 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCA
ATTTGTAAAATTATTG
Found at i:74905633 original size:133 final size:133
Alignment explanation
Indices: 74905372--74905841 Score: 602
Period size: 133 Copynumber: 3.5 Consensus size: 133
74905362 TAATAAAGAG
*
74905372 AAATTACCAAAATA-CCTCGATTTGTAAAATTACCGAAATACCCTCGATTGAGAAATTACTGAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAA
* **
74905436 TACCCTCGATTTATAAAATTATCGAAATACCCTTGATTGTAAAATTACTGAAATACCCTTGATTT
66 TACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTGTAAAATTACTGAAATACCCTTGATTT
74905501 GTA
131 GTA
* * * ** * *
74905504 AAATTACCGAAATACCCCCAATTTGTAAAATTATTGAAATACCCTCGATTGTGACATTATTGAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAA
* * * *
74905569 TACCCTCGATTTGTAAAATTATTGAAATACCCTCAATTGTGAAATTATTGAAATACCCTCGATTT
66 TACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTGTAAAATTACTGAAATACCCTTGATTT
74905634 GTA
131 GTA
* * *
74905637 AAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCCATTGTGAAATTACTGAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAA
* * * * ** *
74905702 TACCATCGATTTGTAAAATTACCGAAACACCCTCGACTTGTAAAATTACCAAAATACCCTTAATT
66 TACCCTCGATTTGTAAAATTATCGAAATACCCTC-AATTGTAAAATTACTGAAATACCCTTGATT
*
74905767 T-TT
130 TGTA
* * * * * * * *
74905770 AAATTACCGAAATACCATCGATTTGTAAAATTATCAAAATACCCTTGTAGTGTAAAATTACTAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCG-ATTGTGAAATTACTGAA
74905835 ATACCCT
65 ATACCCT
74905842 TGTAGTGTAA
Statistics
Matches: 288, Mismatches: 47, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
132 13 0.05
133 231 0.80
134 44 0.15
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (133 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAA
TACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTGTAAAATTACTGAAATACCCTTGATTT
GTA
Found at i:74905823 original size:27 final size:27
Alignment explanation
Indices: 74905793--74905881 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
74905783 ACCATCGATT
74905793 TGTAAAATTA-TCAAAATACCCTTGTAG
1 TGTAAAATTACT-AAAATACCCTTGTAG
74905820 TGTAAAATTACTAAAATACCCTTGTAG
1 TGTAAAATTACTAAAATACCCTTGTAG
* * * * *
74905847 TGTAAAATGACTGACATACCCCTGTTG
1 TGTAAAATTACTAAAATACCCTTGTAG
*
74905874 GGTAAAAT
1 TGTAAAAT
74905882 GACTGTTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACTAAAATACCCTTGTAG
Found at i:74906143 original size:19 final size:19
Alignment explanation
Indices: 74906116--74906185 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
74906106 GAGGAAGAAA
74906116 TTGAGGATCGCATGGTTGC
1 TTGAGGATCGCATGGTTGC
* * ** *
74906135 TTGATGATCGTGGATCCATTGA
1 TTGAGGATC--GCAT-GGTTGC
74906157 TTGAGGATCGCATGGTTGC
1 TTGAGGATCGCATGGTTGC
*
74906176 TTGACGATCG
1 TTGAGGATCG
74906186 TGCATTGACC
Statistics
Matches: 37, Mismatches: 11, Indels: 6
0.69 0.20 0.11
Matches are distributed among these distances:
19 20 0.54
20 3 0.08
21 3 0.08
22 11 0.30
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.33
Consensus pattern (19 bp):
TTGAGGATCGCATGGTTGC
Found at i:74906161 original size:41 final size:41
Alignment explanation
Indices: 74906115--74906235 Score: 161
Period size: 41 Copynumber: 3.0 Consensus size: 41
74906105 GGAGGAAGAA
* **
74906115 ATTGAGGATCGCATGGTTGCTTGATGATCGTGGATCCATTG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
* **
74906156 ATTGAGGATCGCATGGTTGCTTGACGATCGTGCATTGACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
* * *
74906197 ATTAAGGATCGCATGGTTTCTTGACGACCGTGGATCCAC
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCAC
74906236 TGGTAGCTTT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
Found at i:74908475 original size:20 final size:21
Alignment explanation
Indices: 74908447--74908487 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74908437 TTCCCGCATG
*
74908447 GGTCTATTT-TCACCGTTTTT
1 GGTCCATTTCTCACCGTTTTT
*
74908467 GGTCCATTTCTCGCCGTTTTT
1 GGTCCATTTCTCACCGTTTTT
74908488 ACTCTCCTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.07, C:0.24, G:0.17, T:0.51
Consensus pattern (21 bp):
GGTCCATTTCTCACCGTTTTT
Found at i:74910463 original size:28 final size:28
Alignment explanation
Indices: 74910423--74910486 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
74910413 TGGGAAGTAG
* *
74910423 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
*
74910451 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
74910479 TTGGGCCT
1 TTGGGCCT
74910487 ACAGCGGCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.19, C:0.17, G:0.38, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACGAGA
Found at i:74910824 original size:27 final size:27
Alignment explanation
Indices: 74910794--74911372 Score: 634
Period size: 27 Copynumber: 21.6 Consensus size: 27
74910784 TAATAAAGAG
* *
74910794 AAATTACCAAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74910821 AAATTATCGAAATACCCTTGA-TTG-A
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74910846 GAAATTACTGAAATACCCTCGATCTGTA
1 -AAATTACCGAAATACCCTCGATTTGTA
* *
74910874 AAATTATCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
74910900 AAATTACTGAAATACCGTCGATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74910927 AAATTACCGAAATACTCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
74910954 AAATTACTAAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
*
74910980 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
74911007 AAATTACCAAAACACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74911033 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74911060 AAATTACCAAAATACCCTCGA-ATGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
74911086 AAATTACTAAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74911113 AAATTACCAAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
74911140 AAATTATTGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
74911166 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
74911193 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
74911220 AAATTACAAAAATACTCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74911247 AAATTACCGAAATACCCTTGATTCGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
74911274 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
74911301 AAATTACAAAAAATACTCTCGATTTGTA
1 AAATTAC-CGAAATACCCTCGATTTGTA
* * *
74911329 AAATTACTGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
74911356 AAATGACCGACATACCC
1 AAATTACCGAAATACCC
74911373 CTGTAGGGTA
Statistics
Matches: 461, Mismatches: 81, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
25 1 0.00
26 134 0.29
27 302 0.66
28 24 0.05
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:74910874 original size:53 final size:54
Alignment explanation
Indices: 74910794--74911346 Score: 649
Period size: 53 Copynumber: 10.3 Consensus size: 54
74910784 TAATAAAGAG
* *
74910794 AAATTACCAAAATACCCCCGATTTGTAAAATTATCGAAATACCCTTGA-TTG-A
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
** * *
74910846 GAAATTACTGAAATACCCTCGATCTGTAAAATTATCGAAATACCCTCGA-TTGTG
1 -AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
** * * * * *
74910900 AAATTACTGAAATACCGTCGATTTTTAAAATTACCGAAATACTCTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* *
74910954 AAATTACTAAAATACCCTCGA-TTGTGAAATTA-CTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTA
* * *
74911007 AAATTACCAAAACACCCTCGA-TTGTGAAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * *
74911060 AAATTACCAAAATACCCTCGA-ATGTAAAATTA-CTAAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTA
* * *
74911113 AAATTACCAAAATATCCTCGATTTGTAAAATTATTGAAATACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * *
74911166 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * * * *
74911220 AAATTACAAAAATACTCTCGATTTGTAAAATTACCGAAATACCCTTGATTCGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * * *
74911274 AAATTACCGAAACACCCTCGATTTGTAAAATTA-CAAAAAATACTCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTATC--GAAATACCCTCGATTTGTA
**
74911329 AAATTACTGAAATACCCT
1 AAATTACCAAAATACCCT
74911347 TGTAGTGTAA
Statistics
Matches: 435, Mismatches: 55, Indels: 18
0.86 0.11 0.04
Matches are distributed among these distances:
52 2 0.00
53 275 0.63
54 127 0.29
55 31 0.07
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
Found at i:74910931 original size:80 final size:81
Alignment explanation
Indices: 74910794--74911372 Score: 645
Period size: 80 Copynumber: 7.2 Consensus size: 81
74910784 TAATAAAGAG
* * * *
74910794 AAATTACCAAAATACCCCCGATTTGTAAAATTA-TCGAAATACCCTTGA-TTG-AGAAATTACTG
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACT-AAAATACCCTCGATTTGTA-AAATTACTG
*
74910856 AAATACCCTCGATCTGTA
64 AAATACCCTCGATTTGTA
* * * * * *
74910874 AAATTATCGAAATACCCTCGA-TTGTGAAATTACTGAAATACCGTCGATTTTTAAAATTACCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAA
* *
74910938 ATACTCTTGATTTGTA
66 ATACCCTCGATTTGTA
** * * **
74910954 AAATTACTAAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAA
* *
74911018 ACACCCTCGA-TTGTG
66 ATACCCTCGATTTGTA
* * * * *
74911033 AAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGA-ATGTAAAATTACTAAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAA
*
74911097 ATATCCTCGATTTGTA
66 ATACCCTCGATTTGTA
* * * * * *
74911113 AAATTACCAAAATATCCTCGATTTGTAAAATTATTGAAATACCCTCGA-TTGTGAAATTACTAAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAA
74911177 ATACCCTCGATTTGTA
66 ATACCCTCGATTTGTA
* * * *
74911193 AAATTACCGAAACACCCTCGATTTGTAAAATTACAAAAATACTCTCGATTTGTAAAATTACCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAA
* *
74911258 ATACCCTTGATTCGTA
66 ATACCCTCGATTTGTA
* * *
74911274 AAATTACCGAAACACCCTCGATTTGTAAAATTACAAAAAATACTCTCGATTTGTAAAATTACTGA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTAC-TAAAATACCCTCGATTTGTAAAATTACTGA
* *
74911339 AATACCCTTG-TAGTGTA
65 AATACCCTCGAT-TTGTA
* *
74911356 AAATGACCGACATACCC
1 AAATTACCGAAATACCC
74911373 CTGTAGGGTA
Statistics
Matches: 430, Mismatches: 61, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
79 64 0.15
80 247 0.57
81 63 0.15
82 56 0.13
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (81 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAA
ATACCCTCGATTTGTA
Found at i:74911377 original size:27 final size:27
Alignment explanation
Indices: 74911325--74911389 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
74911315 ACTCTCGATT
* * *
74911325 TGTAAAATTACTGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCCTGTAG
*
74911352 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATGACCGAAATACCCCTGTAG
*
74911379 GGTAAAATGAC
1 TGTAAAATGAC
74911390 TGTTTTGCCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTGTAG
Found at i:74911666 original size:41 final size:41
Alignment explanation
Indices: 74911621--74911743 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 41
74911611 GGAGGAAGAA
* *
74911621 ATTGAGGATCTCATGGTTTCTTGACAACCGTGGATCCACCG
1 ATTGAGGATCTCATGGTTACTTGACGACCGTGGATCCACCG
* * * *
74911662 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCGATCG
1 ATTGAGGATCTCATGGTTACTTGACGACCGTGGATCCACCG
* *
74911703 ATTAAGGAT-TACATGGTTACTTGGCGACCGTGGATCCACCG
1 ATTGAGGATCT-CATGGTTACTTGACGACCGTGGATCCACCG
74911744 GTGGCTTTTA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCTCATGGTTACTTGACGACCGTGGATCCACCG
Found at i:74913737 original size:16 final size:16
Alignment explanation
Indices: 74913716--74913774 Score: 66
Period size: 16 Copynumber: 3.7 Consensus size: 16
74913706 GTAGATCGGT
74913716 AAAAGCCGAAAA-GCCA
1 AAAAGCC-AAAATGCCA
**
74913732 AAAAGCCAAAATGCTG
1 AAAAGCCAAAATGCCA
*
74913748 AAAAGTCAAAATGCCA
1 AAAAGCCAAAATGCCA
*
74913764 AAAAGCTAAAA
1 AAAAGCCAAAA
74913775 GTTTGGCTAC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
15 4 0.11
16 31 0.89
ACGTcount: A:0.58, C:0.19, G:0.15, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATGCCA
Found at i:74913750 original size:24 final size:24
Alignment explanation
Indices: 74913716--74913775 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
74913706 GTAGATCGGT
*
74913716 AAAAGCCGAAAAGCCAAAAAGCCA
1 AAAAGCTGAAAAGCCAAAAAGCCA
* * *
74913740 AAATGCTGAAAAGTCAAAATGCCA
1 AAAAGCTGAAAAGCCAAAAAGCCA
74913764 AAAAGCT-AAAAG
1 AAAAGCTGAAAAG
74913776 TTTGGCTACG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
23 5 0.16
24 26 0.84
ACGTcount: A:0.57, C:0.18, G:0.17, T:0.08
Consensus pattern (24 bp):
AAAAGCTGAAAAGCCAAAAAGCCA
Found at i:74913774 original size:8 final size:8
Alignment explanation
Indices: 74913716--74913774 Score: 55
Period size: 8 Copynumber: 7.4 Consensus size: 8
74913706 GTAGATCGGT
*
74913716 AAAAGCCG
1 AAAAGCCA
74913724 AAAAGCCA
1 AAAAGCCA
74913732 AAAAGCCA
1 AAAAGCCA
* **
74913740 AAATGCTG
1 AAAAGCCA
*
74913748 AAAAGTCA
1 AAAAGCCA
*
74913756 AAATGCCA
1 AAAAGCCA
*
74913764 AAAAGCTA
1 AAAAGCCA
74913772 AAA
1 AAA
74913775 GTTTGGCTAC
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
8 39 1.00
ACGTcount: A:0.58, C:0.19, G:0.15, T:0.08
Consensus pattern (8 bp):
AAAAGCCA
Found at i:74916536 original size:47 final size:47
Alignment explanation
Indices: 74916478--74916875 Score: 579
Period size: 47 Copynumber: 8.5 Consensus size: 47
74916468 ATTCAGCCAA
*
74916478 GAAAGTGTATATGTGTGATAAGGCCTAAGAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAAGAGCCGATGTGATGAATGT
74916525 GAAAGTGTATATATGTGATAAGGCCTAATG-GCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAA-GAGCCGATGTGATGAATGT
* *
74916572 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAAGAGCCGATGTGATGAATGT
* *
74916619 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAAGAGCCGATGTGATGAATGT
*
74916666 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAAGAGCCGATGTGATGAATGT
74916713 GAAAGTGTATATATGTGATAAGGCCTAATG-GCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAA-GAGCCGATGTGATGAATGT
* *
74916760 GAAAGTGTATATATGTGACAAGGCCTAATG-GCCAATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAA-GAGCCGATGTGATGAATGT
* * * * * * *
74916807 GAAAGTGTATATATGTGACAGGGCC-GAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAAG-AGCCGATGTGATGAATGT
* *
74916854 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
74916876 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 328 0.99
48 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAAGAGCCGATGTGATGAATGT
Found at i:74916605 original size:94 final size:94
Alignment explanation
Indices: 74916478--74916875 Score: 643
Period size: 94 Copynumber: 4.2 Consensus size: 94
74916468 ATTCAGCCAA
* *
74916478 GAAAGTGTATATGTGTGATAAGGCCTAAGAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74916543 TAAGGCCTAATGGCCGATGTGATGAATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
* *
74916572 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
74916637 TAAGGCCTAATAGCCGATGTGATGAATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
74916666 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
74916731 TAAGGCCTAATGGCCGATGTGATGAATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
* * *
74916760 GAAAGTGTATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
74916825 CAGGGCCGAGTGGCCAACGTGATGGATGT
66 TAAGGCCTAATGGCCGATGTGATGAATGT
* *
74916854 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
74916876 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 285 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:74916732 original size:141 final size:141
Alignment explanation
Indices: 74916478--74916875 Score: 643
Period size: 141 Copynumber: 2.8 Consensus size: 141
74916468 ATTCAGCCAA
*
74916478 GAAAGTGTATATGTGTGATAAGGCCTAAGAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
74916543 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
74916608 GTGATGAATGT
131 GTGATGAATGT
74916619 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
74916684 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
74916749 GTGATGAATGT
131 GTGATGAATGT
* * * *
74916760 GAAAGTGTATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
74916825 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74916876 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
141 239 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (141 bp):
GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGT
Found at i:74917050 original size:37 final size:37
Alignment explanation
Indices: 74916994--74917072 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
74916984 CCGAGCTCTA
* *
74916994 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
74917031 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74917068 AAGAC
1 AAGAC
74917073 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74918984 original size:43 final size:43
Alignment explanation
Indices: 74918936--74919038 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
74918926 TTGGTTTTCA
74918936 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
74918979 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
74919022 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
74919039 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:74919055 original size:29 final size:29
Alignment explanation
Indices: 74919020--74919093 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
74919010 GTTGTGAGAT
* *
74919020 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
74919049 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
74919078 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74919094 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:74923106 original size:47 final size:47
Alignment explanation
Indices: 74923048--74923504 Score: 628
Period size: 47 Copynumber: 9.5 Consensus size: 47
74923038 ATTCAGCCAA
*
74923048 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
74923095 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
74923142 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
74923191 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
74923238 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
74923285 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCC---TA----A--T-A-GCCGATGTGATGAATGT
74923343 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
74923390 GAAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * * *
74923437 G-AAGTGTATATATTTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
74923483 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
74923505 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 20, Indels: 28
0.89 0.05 0.07
Matches are distributed among these distances:
46 38 0.10
47 239 0.64
48 1 0.00
49 48 0.13
50 2 0.01
51 1 0.00
54 1 0.00
55 2 0.01
56 1 0.00
57 1 0.00
58 42 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:74923337 original size:58 final size:58
Alignment explanation
Indices: 74923268--74923384 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
74923258 AGGCCTAATA
74923268 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
74923326 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
74923384 G
1 G
74923385 AATGTGAAAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (58 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
Found at i:74923343 original size:105 final size:105
Alignment explanation
Indices: 74923221--74923431 Score: 395
Period size: 105 Copynumber: 2.0 Consensus size: 105
74923211 AGGCCTAATA
*
74923221 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
*
74923286 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
66 AAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGAT
74923326 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
*
74923391 AAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGAT
66 AAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGAT
74923431 G
1 G
74923432 AATGTGAAGT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (105 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGAT
Found at i:74923360 original size:152 final size:151
Alignment explanation
Indices: 74923174--74923449 Score: 507
Period size: 152 Copynumber: 1.8 Consensus size: 151
74923164 AGGCCTAATG
*
74923174 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* *
74923239 AAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTG-AAGTGTATATATGTGAT
74923304 AAGGCCTAATAGCCGATGTGAT
130 AAGGCCTAATAGCCGATGTGAT
74923326 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
*
74923391 AAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAGTGTATATAT
66 AAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAAGTGTATATAT
74923450 TTGACAGGGC
Statistics
Matches: 120, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
151 12 0.10
152 108 0.90
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (151 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAAGTGTATATATGTGATA
AGGCCTAATAGCCGATGTGAT
Found at i:74923462 original size:143 final size:141
Alignment explanation
Indices: 74923048--74923504 Score: 648
Period size: 143 Copynumber: 3.2 Consensus size: 141
74923038 ATTCAGCCAA
*
74923048 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
74923113 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA-GGCCTAATGGCC
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-T-TGA-AAGGGCCGAGTGGCC
74923177 GATGTGATGAATGT
128 GATGTGATGAATGT
* *
74923191 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
74923256 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTGA-AAGG-------GCCGA-
74923321 GTGATGCCGATGTGATGAATGT
122 GTG--GCCGATGTGATGAATGT
74923343 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
74923408 TAAGGCCAAATGGCCGATGTGATGAATGTG-AAGTGTATATATTTGACAGGGCCGAGTGGCCAAC
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTGAAAGGGCCGAGTGGCCGAT
*
74923472 GTGATGGATGT
131 GTGATGAATGT
* *
74923483 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
74923505 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 16, Indels: 25
0.88 0.05 0.08
Matches are distributed among these distances:
140 34 0.12
141 6 0.02
142 4 0.01
143 111 0.39
149 4 0.01
150 5 0.02
151 15 0.05
152 108 0.38
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTGAAAGGGCCGAGTGGCCGAT
GTGATGAATGT
Found at i:74923486 original size:93 final size:94
Alignment explanation
Indices: 74923326--74923504 Score: 252
Period size: 93 Copynumber: 1.9 Consensus size: 94
74923316 CCGATGTGAT
* * * *
74923326 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTG
* *
74923391 AAAGTGTATATATGTGATAAGGCCAAATG
66 AAAGTGCATAAATGTGATAAGGCCAAATG
* * * * *
74923420 GCCGATGTGATGAATGTG-AAGTGTATATATTTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTG
74923484 AAAGTGCATAAATGTGATAAG
66 AAAGTGCATAAATGTGATAAG
74923505 TCCCGAAGGG
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
93 56 0.76
94 18 0.24
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (94 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTG
AAAGTGCATAAATGTGATAAGGCCAAATG
Found at i:74923679 original size:37 final size:37
Alignment explanation
Indices: 74923623--74923701 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
74923613 CCGAGCTCTA
* *
74923623 AAGACCCGATGACTACGTGTGG-GAATTTTGCCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGCCCGGGT
* *
74923660 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
74923697 AAGAC
1 AAGAC
74923702 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
Found at i:74927173 original size:122 final size:122
Alignment explanation
Indices: 74927012--74927265 Score: 343
Period size: 122 Copynumber: 2.1 Consensus size: 122
74927002 AGCCATATTT
* * * *
74927012 AAGAAGCTCATGCGATCCATTAACTGGTAGCTCCAAAGAGCCATTAATTGAGAAGCTCCGGATAG
1 AAGAAGCTCATGCGAACCAATAACTGGTAGCTCCAAAGAGCCATTAATCGAGAAGCTCCAGATAG
* *
74927077 CCATATATTAGGAAGTTCAAGCGAGCCATATAGGGCAA-C-TCTGGAGAGCCATTAATC
66 CCATATATTAGGAAGTTCAAGCGACCCATATAGGG-AAGCTTC-AGAGAGCCATTAATC
* * *
74927134 AAGAAGCTCATGCGAACCAATAAC-GGATAGCTCCGAAGAGCCATTAATCGGGAAGCTCTAGATA
1 AAGAAGCTCATGCGAACCAATAACTGG-TAGCTCCAAAGAGCCATTAATCGAGAAGCTCCAGATA
* * *
74927198 GCCATATATTAGGAAGTTCAAGTGACCCATATTGGGAAGCTTCAGAGAGCCATTAATT
65 GCCATATATTAGGAAGTTCAAGCGACCCATATAGGGAAGCTTCAGAGAGCCATTAATC
*
74927256 AGGAAGCTCA
1 AAGAAGCTCA
74927266 CAAAGATCCT
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
121 4 0.03
122 110 0.95
123 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (122 bp):
AAGAAGCTCATGCGAACCAATAACTGGTAGCTCCAAAGAGCCATTAATCGAGAAGCTCCAGATAG
CCATATATTAGGAAGTTCAAGCGACCCATATAGGGAAGCTTCAGAGAGCCATTAATC
Found at i:74927260 original size:25 final size:25
Alignment explanation
Indices: 74927170--74927263 Score: 70
Period size: 25 Copynumber: 3.8 Consensus size: 25
74927160 ATAGCTCCGA
** *
74927170 AGAGCCATTAATCGGGAAGC-TCTAG
1 AGAGCCA-TAATTAGGAAGCTTCAAG
*
74927195 ATAGCCATATATTAGGAAG-TTCAAG
1 AGAGCCATA-ATTAGGAAGCTTCAAG
* * *
74927220 TGACCCAT-ATTGGGAAGCTTC-AG
1 AGAGCCATAATTAGGAAGCTTCAAG
74927243 AGAGCCATTAATTAGGAAGCT
1 AGAGCCA-TAATTAGGAAGCT
74927264 CACAAAGATC
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
23 15 0.28
24 6 0.11
25 32 0.60
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (25 bp):
AGAGCCATAATTAGGAAGCTTCAAG
Found at i:74927311 original size:26 final size:27
Alignment explanation
Indices: 74927228--74927311 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 27
74927218 AGTGACCCAT
74927228 ATTGGGAAGCTTCA-G-AGAGCCAT-TA
1 ATTGGGAAGC-TCACGAAGAGCCATATA
* * * *
74927253 ATTAGGAAGCTCACAAAGATCC-TTTA
1 ATTGGGAAGCTCACGAAGAGCCATATA
*
74927279 ATCGGGAAGCTCACGAAGAGCCATAT-
1 ATTGGGAAGCTCACGAAGAGCCATATA
74927305 ATTGGGA
1 ATTGGGA
74927312 CCTCATAAGA
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
24 3 0.07
25 10 0.22
26 31 0.67
27 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (27 bp):
ATTGGGAAGCTCACGAAGAGCCATATA
Found at i:74933941 original size:14 final size:15
Alignment explanation
Indices: 74933891--74933941 Score: 61
Period size: 14 Copynumber: 3.4 Consensus size: 15
74933881 ACTCATAACT
74933891 TATATTATATACATA
1 TATATTATATACATA
74933906 TA-ATTATATACAT-
1 TATATTATATACATA
*
74933919 TTTATTATTATAACATA
1 TATATTA-TAT-ACATA
74933936 TATATT
1 TATATT
74933942 GTACATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 15 0.50
15 5 0.17
16 4 0.13
17 5 0.17
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (15 bp):
TATATTATATACATA
Found at i:74947620 original size:7 final size:7
Alignment explanation
Indices: 74947608--74947633 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
74947598 CCTAGATGAA
74947608 TTGGGCT
1 TTGGGCT
74947615 TTGGGCT
1 TTGGGCT
74947622 TTGGGCT
1 TTGGGCT
74947629 TTGGG
1 TTGGG
74947634 TCTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.46, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:74948923 original size:16 final size:16
Alignment explanation
Indices: 74948904--74948938 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
74948894 CGAAAAGCTA
*
74948904 AAATATTGAAAAGCCG
1 AAATACTGAAAAGCCG
*
74948920 AAATGCTGAAAAGCCG
1 AAATACTGAAAAGCCG
74948936 AAA
1 AAA
74948939 GTTTGGCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.14
Consensus pattern (16 bp):
AAATACTGAAAAGCCG
Found at i:74949221 original size:28 final size:28
Alignment explanation
Indices: 74949152--74949265 Score: 133
Period size: 28 Copynumber: 4.1 Consensus size: 28
74949142 AGCATAACTG
* *
74949152 TAAATGTGATTGGGCTTAGT-GGCCATA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* *
74949179 TGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAATGGGCCATA
*
74949208 TAAATGTGAATGGGCCTAATGGGCCATA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* *
74949236 TGAAA-GAGATTGGGCCTAGTGGGCCATA
1 T-AAATGTGATTGGGCCTAATGGGCCATA
74949264 TA
1 TA
74949266 TATATGTATG
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
27 9 0.12
28 48 0.65
29 17 0.23
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGCCATA
Found at i:74949249 original size:56 final size:56
Alignment explanation
Indices: 74949152--74949261 Score: 150
Period size: 56 Copynumber: 2.0 Consensus size: 56
74949142 AGCATAACTG
* * * * *
74949152 TAAATGTGATTGGGCTTAGTGGCCATATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGAATGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
*
74949208 TAAATGTGAATGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGCCA
1 TAAATGTGAATGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
74949262 TATATATATG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 33 0.70
57 14 0.30
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (56 bp):
TAAATGTGAATGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
Found at i:74952480 original size:30 final size:30
Alignment explanation
Indices: 74952446--74952502 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
74952436 CCGAGCCTAG
*
74952446 GGGCAAAACTATAATTATGCAAAAGTTTAT
1 GGGCAAAAATATAATTATGCAAAAGTTTAT
* * *
74952476 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATATAATTATGCAAAAGTT
74952503 GGTATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (30 bp):
GGGCAAAAATATAATTATGCAAAAGTTTAT
Found at i:74954696 original size:21 final size:21
Alignment explanation
Indices: 74954655--74954696 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74954645 TCCCCCACCT
* *
74954655 CCCCCGATTCCTCAACTTGTA
1 CCCCCGATGCCTCAACGTGTA
*
74954676 CCCCCGATGCCTCAAGGTGTA
1 CCCCCGATGCCTCAACGTGTA
74954697 GATCTGATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.40, G:0.17, T:0.24
Consensus pattern (21 bp):
CCCCCGATGCCTCAACGTGTA
Found at i:74959389 original size:30 final size:30
Alignment explanation
Indices: 74959353--74959412 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
74959343 TTCCCAAGCC
*
74959353 TAGGGGCAAAAGTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAATGTAATTTTGCAAAAGTT
*
74959383 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTTTGCAAAAGTT
74959413 GGTATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTGCAAAAGTT
Found at i:74963388 original size:28 final size:28
Alignment explanation
Indices: 74963348--74963459 Score: 100
Period size: 28 Copynumber: 4.0 Consensus size: 28
74963338 CATGACTATA
*
74963348 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* * * *
74963376 AATGTGATTTGGGCCTAATAGACCACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* * *
74963405 AATGTGAATGGACCTAATGGGCTATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * *
74963433 AAAGAGATTGGGCCTAGTGGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
74963460 ATATATAGGT
Statistics
Matches: 66, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
28 53 0.80
29 13 0.20
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:74966375 original size:17 final size:15
Alignment explanation
Indices: 74966325--74966381 Score: 64
Period size: 14 Copynumber: 3.7 Consensus size: 15
74966315 ACTCATAACT
74966325 TATATTATATACATA
1 TATATTATATACATA
74966340 TA-ATTATATACAT-
1 TATATTATATACATA
*
74966353 TTTATTATTATAGCATA
1 TATATTA-TATA-CATA
74966370 TATATTTATATA
1 TATA-TTATATA
74966382 TATTGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
13 1 0.03
14 15 0.43
15 6 0.17
16 3 0.09
17 7 0.20
18 3 0.09
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (15 bp):
TATATTATATACATA
Found at i:74981362 original size:37 final size:38
Alignment explanation
Indices: 74981278--74981438 Score: 252
Period size: 38 Copynumber: 4.3 Consensus size: 38
74981268 ATTCTGGAAT
74981278 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
74981316 TATATCCGGGTTAAATCCCACAGGCTTCGTGCT-GTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
74981353 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * * *
74981391 TATATCCGGGTTAAATCCCGTAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
74981429 TATATTCGGG
1 TATATCCGGG
74981439 CCTTCGTGCC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
37 35 0.31
38 78 0.69
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:74981423 original size:75 final size:76
Alignment explanation
Indices: 74981278--74981438 Score: 252
Period size: 75 Copynumber: 2.1 Consensus size: 76
74981268 ATTCTGGAAT
*
74981278 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCCT
*
74981343 CGTGCT-GTAA
66 AGTGCTGGTAA
* **
74981353 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGTAGGCCT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCCT
*
74981418 AGTGCTGGTAT
66 AGTGCTGGTAA
*
74981429 TATATTCGGG
1 TATATCCGGG
74981439 CCTTCGTGCC
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
75 66 0.85
76 12 0.15
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (76 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCCT
AGTGCTGGTAA
Found at i:74987959 original size:27 final size:27
Alignment explanation
Indices: 74987928--74988078 Score: 187
Period size: 27 Copynumber: 5.6 Consensus size: 27
74987918 TAAATTGTAC
74987928 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
74987955 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74987981 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
74988009 GGCACTAAGTTTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
74988037 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
74988064 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74988079 GACTCGATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
27 83 0.79
28 22 0.21
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:74988042 original size:82 final size:81
Alignment explanation
Indices: 74987929--74988078 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
74987919 AAATTGTACA
*
74987929 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
74987993 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
74988010 GCACTAAGTTTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
74988075 TGCG
65 TGCG
74988079 GACTCGATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 14 0.23
82 47 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:74991327 original size:40 final size:40
Alignment explanation
Indices: 74991278--74991355 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
74991268 CGGATGTAAC
74991278 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
74991318 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATA
74991356 TTTTTTTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:74996204 original size:27 final size:27
Alignment explanation
Indices: 74996173--74996350 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
74996163 TAAATTGTAC
74996173 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
74996200 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74996226 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
74996254 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
74996282 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74996309 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
74996336 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74996351 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:74996287 original size:82 final size:81
Alignment explanation
Indices: 74996174--74996329 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
74996164 AAATTGTACA
*
74996174 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
74996238 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
74996255 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
74996320 TGCGAGTTGA
65 TGCGAATTGA
74996330 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:74996341 original size:82 final size:81
Alignment explanation
Indices: 74996170--74996350 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
74996160 GATTAAATTG
*
74996170 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
74996235 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
74996251 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
74996315 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
74996333 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
74996351 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75003762 original size:27 final size:27
Alignment explanation
Indices: 75003731--75003908 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75003721 TAAATTGTAC
75003731 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75003758 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75003784 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75003812 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75003840 AGCACTAAGTGTGTGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75003867 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75003894 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75003909 GACTCGATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75003845 original size:82 final size:81
Alignment explanation
Indices: 75003732--75003887 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75003722 AAATTGTACA
*
75003732 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
75003796 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
75003813 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGTGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
75003878 TGCGAGTTGA
65 TGCGAATTGA
75003888 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75003899 original size:82 final size:81
Alignment explanation
Indices: 75003728--75003908 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
75003718 GATTAAATTG
*
75003728 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
75003793 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
75003809 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGTGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
75003873 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75003891 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75003909 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75005631 original size:49 final size:49
Alignment explanation
Indices: 75005410--75005822 Score: 608
Period size: 49 Copynumber: 8.6 Consensus size: 49
75005400 CCCTTCGGGA
* * * * *
75005410 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75005457 CCTGTCAC--ATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75005504 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75005551 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75005598 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75005647 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75005696 CTTATCACATATATATACATTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75005745 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTATGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75005794 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
75005823 TATTCAAATA
Statistics
Matches: 337, Mismatches: 25, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 132 0.39
49 204 0.61
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75009649 original size:27 final size:28
Alignment explanation
Indices: 75009565--75009662 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
75009555 CATGAGATTG
* * * *
75009565 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
75009594 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
75009622 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75009649 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
75009663 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75009673 original size:27 final size:27
Alignment explanation
Indices: 75009593--75009675 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
75009583 TAAATTGTAC
* *
75009593 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
75009621 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
75009648 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
75009675 A
1 A
75009676 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:75009676 original size:29 final size:27
Alignment explanation
Indices: 75009565--75009676 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
75009555 CATGAGATTG
** * *
75009565 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
75009594 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
75009622 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
75009649 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
75009677 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:75018369 original size:29 final size:29
Alignment explanation
Indices: 75018327--75018387 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
75018317 AACCCGGTTA
75018327 TAATAACCCGCACGAATGCCTTCGGGACT
1 TAATAACCCGCACGAATGCCTTCGGGACT
75018356 TAATAACCCGCACGAATGCCTTCGGGACT
1 TAATAACCCGCACGAATGCCTTCGGGACT
75018385 TAA
1 TAA
75018388 CCCGGTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (29 bp):
TAATAACCCGCACGAATGCCTTCGGGACT
Found at i:75025922 original size:41 final size:41
Alignment explanation
Indices: 75025865--75025946 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
75025855 TCTTGCTGGT
*
75025865 AAGGTTGTTGTTGGAAGCCCGGAGGGACTTGTGCTATTTGA
1 AAGGTTATTGTTGGAAGCCCGGAGGGACTTGTGCTATTTGA
* *
75025906 AAGGTTATTGTTGGAAGCCTGGAGGGACTTGTGCTCTTTGA
1 AAGGTTATTGTTGGAAGCCCGGAGGGACTTGTGCTATTTGA
75025947 TTTCCTTGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.20, C:0.12, G:0.35, T:0.33
Consensus pattern (41 bp):
AAGGTTATTGTTGGAAGCCCGGAGGGACTTGTGCTATTTGA
Found at i:75027326 original size:6 final size:6
Alignment explanation
Indices: 75027296--75027483 Score: 127
Period size: 6 Copynumber: 30.3 Consensus size: 6
75027286 AAGAAACATT
* *
75027296 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
75027343 GTGACAGA ATCAAA ATCAGA ATCAGA ATTAGA ATTAGGTA AT-AGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
75027394 ATCAGT ATCAGGTA A-CAGA ATCATA ATCAGA A-CTAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATC-AGA ATCAGA ATCA-G-A
* *
75027445 ATCAGA ATTAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
75027484 GTGAATGCAA
Statistics
Matches: 145, Mismatches: 19, Indels: 36
0.73 0.09 0.18
Matches are distributed among these distances:
5 10 0.07
6 110 0.76
7 15 0.10
8 10 0.07
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Done.