Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 228 of 356
Found at i:75027362 original size:37 final size:37
Alignment explanation
Indices: 75027319--75027483 Score: 127
Period size: 37 Copynumber: 4.2 Consensus size: 37
75027309 TCAAAATGAG
*
75027319 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* * * *
75027356 AATCAGAATCAGAATTAGAATTAGGTAATAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* *
75027393 AATCAGTATCAGGTAACAGAATCATAATCA-G-AACTAGAATCAG
1 AATCAG-A--A--T--CAGAATCAGAATCAGGTAAC-AGAATCAA
* * * *
75027436 AATTAGGTAATCAGAATTAGTATCAGGTAACAGAATCAG
1 AATCA-G-AATCAGAATCAGAATCAGGTAACAGAATCAA
75027475 AATCAGAAT
1 AATCAGAAT
75027484 GTGAATGCAA
Statistics
Matches: 103, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
37 41 0.40
38 13 0.13
39 13 0.13
40 5 0.05
42 4 0.04
43 13 0.13
44 14 0.14
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.22
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:75027388 original size:25 final size:25
Alignment explanation
Indices: 75027359--75027483 Score: 90
Period size: 25 Copynumber: 4.7 Consensus size: 25
75027349 GAATCAAAAT
* *
75027359 CAGAATCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
75027384 TAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
75027409 CAGAATCATAATCAGAA-CTAGAATCAGAA
1 CAGAATCAGAATCAGAATC-AG-GT---AA
* * *
75027438 TTAGGTAATCAGAATTAGTATCAGGTAA
1 -CA-G-AATCAGAATCAGAATCAGGTAA
75027466 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
75027484 GTGAATGCAA
Statistics
Matches: 75, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
24 1 0.01
25 50 0.67
26 2 0.03
27 1 0.01
28 2 0.03
29 2 0.03
30 1 0.01
31 2 0.03
32 13 0.17
33 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.23
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:75027397 original size:43 final size:42
Alignment explanation
Indices: 75027296--75027376 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
75027286 AAGAAACATT
*
75027296 ATCAGA-ACTAGAATCAAAATGAGAATCAGAATCAGAATCAGA
1 ATCAGATAC-AGAATCAAAATCAGAATCAGAATCAGAATCAGA
* *
75027338 ATCAGGTGACAGAATCAAAATCAGAATCAGAATTAGAAT
1 ATCAGAT-ACAGAATCAAAATCAGAATCAGAATCAGAAT
75027377 TAGGTAATAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 5 0.15
43 27 0.79
44 2 0.06
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.19
Consensus pattern (42 bp):
ATCAGATACAGAATCAAAATCAGAATCAGAATCAGAATCAGA
Found at i:75027405 original size:62 final size:60
Alignment explanation
Indices: 75027296--75027483 Score: 215
Period size: 62 Copynumber: 3.1 Consensus size: 60
75027286 AAGAAACATT
* * * * *
75027296 ATCAGAA-CTAGAATCAAAATGAGAATCAGAATCAGAATCAGAATCAGGTGACAGAATCAAA
1 ATCAGAATCTAGAATCAGAATTAG-GT-AGAATCAGAATCAGTATCAGGTAACAGAATCAAA
* *
75027357 ATCAGAATC-AGAATTAGAATTAGGTAATAGAATCAGAATCAGTATCAGGTAACAGAATCATA
1 ATCAGAATCTAGAATCAGAATTAGG---TAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
* *
75027419 ATCAGAA-CTAGAATCAGAATTAGGT--AATCAGAATTAGTATCAGGTAACAGAATCAGA
1 ATCAGAATCTAGAATCAGAATTAGGTAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
75027476 ATCAGAAT
1 ATCAGAAT
75027484 GTGAATGCAA
Statistics
Matches: 111, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
57 37 0.33
59 1 0.01
61 19 0.17
62 53 0.48
63 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (60 bp):
ATCAGAATCTAGAATCAGAATTAGGTAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
Found at i:75027650 original size:27 final size:26
Alignment explanation
Indices: 75027602--75027657 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
75027592 GCGAGGCTGC
*
75027602 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
75027629 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
75027655 CAG
1 CAG
75027658 GTATATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:75028030 original size:27 final size:27
Alignment explanation
Indices: 75028000--75028247 Score: 207
Period size: 27 Copynumber: 9.2 Consensus size: 27
75027990 GGTAACATGG
* * * *
75028000 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
75028027 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
75028054 TAATTCAACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * * *
75028081 TATTTTTACCCTACAAGAGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
75028108 TAATTCTACCCTACAGGGGTATTT-TA
1 TAATTCTACCCTACAGGGGTATTTCGA
75028134 GTAATTCTACCCTACAGGGGTATTTC-A
1 -TAATTCTACCCTACAGGGGTATTTCGA
* * * * * *
75028161 GTATTTTTACCCAACAGGGGCATTTTGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
* * *
75028189 TATTTCTACCCTACAAGGATATTTCAGCA
1 TAATTCTACCCTACAGGGGTATTTC-G-A
* * *
75028218 T--TTCTACCCTGCAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
75028243 TAATT
1 TAATT
75028248 TTGTAAATCG
Statistics
Matches: 179, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 175 0.98
28 1 0.01
29 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:75028058 original size:54 final size:54
Alignment explanation
Indices: 75027999--75028247 Score: 239
Period size: 54 Copynumber: 4.6 Consensus size: 54
75027989 GGGTAACATG
* * * * *
75027999 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
* * * * * * *
75028053 ATAATTCAACCCTACAGGGGTATTTCGGTATTTTTACCCTACAAGAGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
* *
75028107 GTAATTCTACCCTACAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAAGGGTATTTCA
* * * * * * * *
75028161 GTATTTTTACCCAACAGGGGCATTTTGGTATTTCTACCCTACAAGGATATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
* * * * *
75028215 GCATTTCTACCCTGCAAGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCGATAATT
75028248 TTGTAAATCG
Statistics
Matches: 155, Mismatches: 38, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
54 155 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
Found at i:75028089 original size:81 final size:81
Alignment explanation
Indices: 75027998--75028249 Score: 315
Period size: 81 Copynumber: 3.1 Consensus size: 81
75027988 GGGGTAACAT
* * * * *
75027998 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCAAC
1 GGTAATTTTACCCAACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
75028063 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * *
75028079 GGTATTTTTACCCTACAAGAGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
1 GGTAATTTTACCCAACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
75028144 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * * * * * * * *
75028160 AGTATTTTTACCCAACAGGGGCATTTTGGTATTTCTACCCTACAAGGATATTTCAGCATTTCTAC
1 GGTAATTTTACCCAACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* *
75028225 CCTGCAAGGGTATTTC
66 CCTACAGGGGTATTTC
75028241 GGTAATTTT
1 GGTAATTTT
75028250 GTAAATCGAG
Statistics
Matches: 147, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 147 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
GGTAATTTTACCCAACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:75028261 original size:27 final size:27
Alignment explanation
Indices: 75028231--75028320 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
75028221 CTACCCTGCA
75028231 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTGTAAATCG
*** * * *
75028258 AGGGTAAAACGGTAATTCTGTACATCA
1 AGGGTATTTCGGTAATTTTGTAAATCG
*** *
75028285 AGGGTACTTTC-GTAATTTCACAAGTCG
1 AGGGTA-TTTCGGTAATTTTGTAAATCG
75028312 AGGGTATTT
1 AGGGTATTT
75028321 TAATAATTTT
Statistics
Matches: 46, Mismatches: 16, Indels: 3
0.71 0.25 0.05
Matches are distributed among these distances:
26 3 0.07
27 42 0.91
28 1 0.02
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.34
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTGTAAATCG
Found at i:75028327 original size:27 final size:27
Alignment explanation
Indices: 75028297--75028375 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
75028287 GGTACTTTCG
75028297 TAATTTCACAAGTCGAGGGTATTTTAA
1 TAATTTCACAAGTCGAGGGTATTTTAA
* * * *
75028324 TAATTTTACAGGTTGAGGGTATTTTAG
1 TAATTTCACAAGTCGAGGGTATTTTAA
*
75028351 TAATTTCACAAATC-AGGGGTATTTT
1 TAATTTCACAAGTCGA-GGGTATTTT
75028376 GGTAATTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
TAATTTCACAAGTCGAGGGTATTTTAA
Found at i:75028328 original size:54 final size:53
Alignment explanation
Indices: 75028278--75028483 Score: 150
Period size: 54 Copynumber: 3.8 Consensus size: 53
75028268 GGTAATTCTG
* *
75028278 TACA-TCAAGGGTACTTTCGTAATTTCACAAGTC-GAGGGTATTTTAATAATTT
1 TACAGTCAAGGGTACTTTAGTAATTTCACAAATCAG-GGGTATTTTAATAATTT
** * **
75028330 TACAGGTTGAGGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTT
1 TACA-GTCAAGGGTACTTTAGTAATTTCACAAATCAGGGGTATTTTAATAATTT
** * * * * **
75028384 TACAAACCAGGGGTATTTTCGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTT
1 TAC-AGTCAAGGGTACTTTAGTAATTTCACAAATC-AGGGGTATTTTAATAATTT
* ** * *
75028438 TATAAACAAAGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTT
1 TACAGTC-AAGGGTACTTTAGTAATTTCACAAATC-AGGGGTATTTT
75028484 GGTAATTTGA
Statistics
Matches: 130, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
52 4 0.03
53 4 0.03
54 120 0.92
55 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
TACAGTCAAGGGTACTTTAGTAATTTCACAAATCAGGGGTATTTTAATAATTT
Found at i:75028380 original size:27 final size:27
Alignment explanation
Indices: 75028340--75028500 Score: 216
Period size: 27 Copynumber: 6.0 Consensus size: 27
75028330 TACAGGTTGA
* *
75028340 GGGTATTTTAGTAATTTCACAAA-TCAG
1 GGGTATTTTGGTAATTTTACAAACT-AG
*
75028367 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
75028394 GGGTATTTTCGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
75028421 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
75028448 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
75028475 GGGTATTTTGGTAATTTGATAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
75028501 AAGTATTCTA
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:75028484 original size:54 final size:54
Alignment explanation
Indices: 75028339--75028503 Score: 251
Period size: 54 Copynumber: 3.0 Consensus size: 54
75028329 TTACAGGTTG
* * *
75028339 AGGGTATTTTAGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTATAAACAA
* *
75028393 GGGGTATTTTCGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAA
*
75028447 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGATAAACTAA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAC-AA
75028502 AG
1 AG
75028504 TATTCTAAAT
Statistics
Matches: 101, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
54 96 0.95
55 5 0.05
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAA
Found at i:75030333 original size:59 final size:58
Alignment explanation
Indices: 75030233--75030345 Score: 199
Period size: 59 Copynumber: 1.9 Consensus size: 58
75030223 TCTAAGGCTG
75030233 GAAATTACCTGAAAGGTTAATAACGGGGTGAGTTTACGAAAACTCAGTGTGAAAGCTA
1 GAAATTACCTGAAAGGTTAATAACGGGGTGAGTTTACGAAAACTCAGTGTGAAAGCTA
* *
75030291 GAAATTACCTGAAAGGTTATTAAACGGGGTGAGTTTATGAAAACTCAGTGTGAAA
1 GAAATTACCTGAAAGGTTAAT-AACGGGGTGAGTTTACGAAAACTCAGTGTGAAA
75030346 TCCCCTACTA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
58 20 0.38
59 32 0.62
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.26
Consensus pattern (58 bp):
GAAATTACCTGAAAGGTTAATAACGGGGTGAGTTTACGAAAACTCAGTGTGAAAGCTA
Found at i:75030492 original size:6 final size:6
Alignment explanation
Indices: 75030471--75030648 Score: 141
Period size: 6 Copynumber: 28.8 Consensus size: 6
75030461 TGTCAGAACT
* * *
75030471 AGAATC AAAATG AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
75030520 AAAATC AGAATC AGAATC ATAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
75030569 AGGTAA-C AGAATC AGAATC AGAACC AGAATC AGAATT AGGTAATC AGAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
75030620 AGTATC AGGTAA-C AGAATC AGAA-C AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
75030649 GTGAATGCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 30
0.73 0.11 0.16
Matches are distributed among these distances:
5 12 0.09
6 104 0.76
7 12 0.09
8 9 0.07
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:75030526 original size:31 final size:31
Alignment explanation
Indices: 75030483--75030648 Score: 154
Period size: 31 Copynumber: 5.5 Consensus size: 31
75030473 AATCAAAATG
*
75030483 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
75030514 AGAATCAAAATCAGAATCAGAATCA--TAATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
*
75030544 AGGTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
* *
75030576 AGAATCAGAATCAGAACCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
* *
75030606 AG-GT---AATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
75030633 AGAATCAGAA-CAGAAT
1 AGAATCAGAATCAGAAT
75030649 GTGAATGCAA
Statistics
Matches: 108, Mismatches: 14, Indels: 27
0.72 0.09 0.18
Matches are distributed among these distances:
26 15 0.14
27 3 0.03
28 3 0.03
29 5 0.05
30 12 0.11
31 64 0.59
32 3 0.03
33 3 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:75030553 original size:25 final size:25
Alignment explanation
Indices: 75030525--75030642 Score: 112
Period size: 25 Copynumber: 4.4 Consensus size: 25
75030515 GAATCAAAAT
*
75030525 CAGAATCAGAATCA-TAATTAGGTAA
1 CAGAATCAGAATCAGT-ATCAGGTAA
75030550 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAA
* * *
75030575 CAGAATCAGAATCAGAACCAGAATCAGAA
1 CAGAATCAGAATCAGTATCAG-GT---AA
*
75030604 TTAGGTAATCAGAATCAGTATCAGGTAA
1 -CA-G-AATCAGAATCAGTATCAGGTAA
75030632 CAGAATCAGAA
1 CAGAATCAGAA
75030643 CAGAATGTGA
Statistics
Matches: 76, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
25 49 0.64
26 3 0.04
27 1 0.01
28 2 0.03
29 2 0.03
30 1 0.01
31 2 0.03
32 16 0.21
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATCAGGTAA
Found at i:75030647 original size:62 final size:62
Alignment explanation
Indices: 75030491--75030648 Score: 188
Period size: 62 Copynumber: 2.6 Consensus size: 62
75030481 TGAGAATCAG
* * *
75030491 AATCAGAATCAGAATCAGGTGACAGAATC---A-A-AATCAGAATCAGAATCATAATTAGGT
1 AATCAGAATCAGAATCAGGTAACAGAATCAGAACAGAATCAGAACCAGAATCAGAATTAGGT
*
75030548 AA-CAGAATCAGAATCA-GTATCAGGTAA-CAGAATCAGAATCAGAACCAGAATCAGAATTAGGT
1 AATCAGAATCAGAATCAGGTAACA-G-AATCAGAA-CAGAATCAGAACCAGAATCAGAATTAGGT
*
75030610 AATCAGAATCAGTATCAGGTAACAGAATCAGAACAGAAT
1 AATCAGAATCAGAATCAGGTAACAGAATCAGAACAGAAT
75030649 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 6, Indels: 17
0.79 0.06 0.16
Matches are distributed among these distances:
55 4 0.05
56 16 0.19
57 4 0.05
59 1 0.01
61 1 0.01
62 34 0.40
63 19 0.23
64 5 0.06
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.19
Consensus pattern (62 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAGAACAGAATCAGAACCAGAATCAGAATTAGGT
Found at i:75030809 original size:37 final size:37
Alignment explanation
Indices: 75030759--75030834 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
75030749 AATTTGCAGC
75030759 GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACA
1 GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACA
75030796 GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACA
1 GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACA
75030833 GA
1 GA
75030835 TATTGTGGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.33, C:0.21, G:0.28, T:0.18
Consensus pattern (37 bp):
GAGGCTGCCAGATATTGTGACGAAGTCACCAGATACA
Found at i:75030852 original size:27 final size:26
Alignment explanation
Indices: 75030804--75030859 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
75030794 CAGAGGCTGC
*
75030804 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
75030831 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
75030857 CAG
1 CAG
75030860 GTATATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:75030953 original size:100 final size:96
Alignment explanation
Indices: 75030770--75030955 Score: 275
Period size: 100 Copynumber: 1.9 Consensus size: 96
75030760 AGGCTGCCAG
*
75030770 ATATTGTGACGAAGTCACCAGATACAGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGA
1 ATATTGTGACGAAGCCACCAGATACAGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGA
*
75030835 TATTGTGGCTAGGCCACCAGAACAGGTATAT
66 TATTGTGGCGAGGCCACCAGAACAGGTATAT
* *
75030866 ATATATGTGGCGAAGCCACCAGATTACAACGAGGCTGCCAGATATTGTGACGAAGTTACCAGA-A
1 ATAT-TGTGACGAAGCCACCAGA-TAC-A-GAGGCTGCCAGATATTGTGACGAAGTCACCAGATA
*
75030930 CAGATATATGTGGCGAGGGCACCAGA
62 CAGATAT-TGTGGCGAGGCCACCAGA
75030956 TTGCAGCGAG
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
96 4 0.05
97 16 0.20
98 3 0.04
99 9 0.11
100 48 0.60
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.20
Consensus pattern (96 bp):
ATATTGTGACGAAGCCACCAGATACAGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGA
TATTGTGGCGAGGCCACCAGAACAGGTATAT
Found at i:75031341 original size:81 final size:81
Alignment explanation
Indices: 75031200--75031452 Score: 310
Period size: 81 Copynumber: 3.1 Consensus size: 81
75031190 GGGGTAACAT
* * * * * *
75031200 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCAAC
1 GGTATTTTTACCCAACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
75031265 CCTACAGAGGTATTTC
66 CCTACAGAGGTATTTC
*
75031281 GGTATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
1 GGTATTTTTACCCAACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
*
75031346 CCTACAGGGGTATTTC
66 CCTACAGAGGTATTTC
* * * * * * * * *
75031362 AGTATTTTTACCCAACAGGGGCATTTTGGTATTTCTACCCTACAAGGATATTTTAGCATTTCTAC
1 GGTATTTTTACCCAACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
* *
75031427 CCTGCA-AGGGTATTTT
66 CCTACAGA-GGTATTTC
75031443 GGTAATTTTT
1 GGT-ATTTTT
75031453 TAAATCGAAG
Statistics
Matches: 149, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
81 143 0.96
82 6 0.04
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
GGTATTTTTACCCAACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
CCTACAGAGGTATTTC
Found at i:75031358 original size:27 final size:27
Alignment explanation
Indices: 75031200--75031449 Score: 239
Period size: 27 Copynumber: 9.3 Consensus size: 27
75031190 GGGGTAACAT
* * * *
75031200 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
75031227 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
75031254 AATAATTCAACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
75031281 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
75031308 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
75031335 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * * *
75031362 AGTATTTTTACCCAACAGGGGCATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
75031389 GGTATTTCTACCCTACAAGGATATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * * *
75031416 AGCATTTCTACCCTGCAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
75031443 GGTAATT
1 GGTAATT
75031450 TTTTAAATCG
Statistics
Matches: 184, Mismatches: 39, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 184 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:75031517 original size:27 final size:27
Alignment explanation
Indices: 75031487--75031718 Score: 127
Period size: 27 Copynumber: 8.7 Consensus size: 27
75031477 CTGTACATCA
* *
75031487 AGGGTACTTTGGTAATTTCACAAGTCG
1 AGGGTATTTTAGTAATTTCACAAGTCG
* * *
75031514 AGGGTATTTTAATAATTTTACAGGTCG
1 AGGGTATTTTAGTAATTTCACAAGTCG
*
75031541 AGGGTATTTTAGTAATTTCACAAATC-
1 AGGGTATTTTAGTAATTTCACAAGTCG
* * * *
75031567 AGGGTATTTTGGTAATTTTACAA-ACT
1 AGGGTATTTTAGTAATTTCACAAGTCG
* * *
75031593 AGGGGTATTTT-GATAATTTTACAA-ACC
1 A-GGGTATTTTAG-TAATTTCACAAGTCG
* * * *
75031620 AGGGGT-TTTTCGTAATTTTACAA-ACT
1 A-GGGTATTTTAGTAATTTCACAAGTCG
* * * * **
75031646 AGGGTTATTTTGGTAATTTTATAAATAA
1 AGGG-TATTTTAGTAATTTCACAAGTCG
* * *
75031674 AGGGTATTTTAGTAATTTTACAA-ACT
1 AGGGTATTTTAGTAATTTCACAAGTCG
*
75031700 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTTAGTAATTT
75031719 GATAAACTAA
Statistics
Matches: 172, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
25 4 0.02
26 43 0.25
27 121 0.70
28 4 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTCACAAGTCG
Found at i:75031586 original size:53 final size:52
Alignment explanation
Indices: 75031487--75031718 Score: 259
Period size: 53 Copynumber: 4.3 Consensus size: 52
75031477 CTGTACATCA
* * * ** *
75031487 AGGGTACTTTGGTAATTTCACAAGTCGAGGGTATTTTAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTCACAAATC-AGGGTATTTTAGTAATTTTACA-AACT
* *
75031541 AGGGTATTTTAGTAATTTCACAAATCAGGGTATTTTGGTAATTTTACAAACT
1 AGGGTATTTTGGTAATTTCACAAATCAGGGTATTTTAGTAATTTTACAAACT
* * * *
75031593 AGGGGTATTTTGATAATTTTACAAACCAGGGGT-TTTTCGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTCACAAATCA-GGGTATTTTAGTAATTTTACAAACT
* * *
75031646 AGGGTTATTTTGGTAATTTTATAAATAAAGGGTATTTTAGTAATTTTACAAACT
1 AGGG-TATTTTGGTAATTTCACAAAT-CAGGGTATTTTAGTAATTTTACAAACT
75031700 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTTGGTAATTT
75031719 GATAAACTAA
Statistics
Matches: 154, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
52 5 0.03
53 84 0.55
54 62 0.40
55 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (52 bp):
AGGGTATTTTGGTAATTTCACAAATCAGGGTATTTTAGTAATTTTACAAACT
Found at i:75031600 original size:80 final size:78
Alignment explanation
Indices: 75031487--75031727 Score: 243
Period size: 80 Copynumber: 3.0 Consensus size: 78
75031477 CTGTACATCA
* * * * ***
75031487 AGGGTACTTTGGTAATTTCACAAGTCGAGGGTATTTTAATAATTTTACAGGTC-GAGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAATAG-GGGTATTTTAATAATTTTACAAACCAG-GGGT-TTTT
75031551 AGTAATTTCACAAA-T
63 AGTAATTTCACAAACT
* *
75031566 CAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTTTTTC
1 -AGGGTATTTTGGTAATTTTACAAA-TAGGGGTATTTTAATAATTTTACAAACCAGGGGTTTTTA
*
75031631 GTAATTTTACAAACT
64 GTAATTTCACAAACT
* * * *
75031646 AGGGTTATTTTGGTAATTTTATAAATAAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTT
1 AGGG-TATTTTGGTAATTTTACAAAT-AGGGGTATTTTAATAATTTTACAAACCAGGGGT-TTTT
* * *
75031711 GGTAATTTGATAAACT
63 AGTAATTTCACAAACT
75031727 A
1 A
75031728 AAGTATTCTA
Statistics
Matches: 137, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
79 21 0.15
80 95 0.69
81 21 0.15
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (78 bp):
AGGGTATTTTGGTAATTTTACAAATAGGGGTATTTTAATAATTTTACAAACCAGGGGTTTTTAGT
AATTTCACAAACT
Found at i:75031725 original size:27 final size:27
Alignment explanation
Indices: 75031542--75031727 Score: 227
Period size: 27 Copynumber: 7.0 Consensus size: 27
75031532 TACAGGTCGA
* *
75031542 GGGTATTTTAGTAATTTCACAAA-TCA-
1 GGGTATTTTGGTAATTTTACAAACT-AG
75031568 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
75031595 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
75031622 GGGT-TTTTCGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
75031648 GGTTATTTTGGTAATTTTATAAA-TAAA
1 GGGTATTTTGGTAATTTTACAAACT-AG
*
75031675 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
75031702 GGGTATTTTGGTAATTTGATAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
75031728 AAGTATTCTA
Statistics
Matches: 137, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
26 45 0.33
27 91 0.66
28 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:75035967 original size:23 final size:21
Alignment explanation
Indices: 75035941--75035994 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 21
75035931 GACACGTGCA
75035941 ATTAAACAAATTAAAACAAACAT
1 ATTAAACAAATTAAAAC--ACAT
* * *
75035964 ATTAAACACATTTAAACACTT
1 ATTAAACAAATTAAAACACAT
75035985 ATTAAACAAA
1 ATTAAACAAA
75035995 AAACACATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 12 0.44
23 15 0.56
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (21 bp):
ATTAAACAAATTAAAACACAT
Found at i:75035989 original size:11 final size:11
Alignment explanation
Indices: 75035960--75035992 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
75035950 ATTAAAACAA
75035960 ACATATTAAAC
1 ACATATTAAAC
75035971 ACAT-TTAAAC
1 ACATATTAAAC
*
75035981 ACTTATTAAAC
1 ACATATTAAAC
75035992 A
1 A
75035993 AAAAACACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (11 bp):
ACATATTAAAC
Found at i:75036849 original size:12 final size:13
Alignment explanation
Indices: 75036821--75036853 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75036811 TTATTTCTTT
75036821 TTCTCCATCTACC
1 TTCTCCATCTACC
*
75036834 TTCTCC-TCTTCC
1 TTCTCCATCTACC
75036846 TTCTCCAT
1 TTCTCCAT
75036854 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:75037966 original size:28 final size:28
Alignment explanation
Indices: 75037920--75038012 Score: 134
Period size: 28 Copynumber: 3.3 Consensus size: 28
75037910 ATGTACTAGA
*
75037920 ATACCCCTATGCATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
75037948 ATACCCCTATGTATACAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
75037976 ATACCCTTATGTATGCAAAATGACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
75038004 ATACCCCTA
1 ATACCCCTA
75038013 GGGTTAATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 1 0.02
28 57 0.98
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:75038171 original size:27 final size:27
Alignment explanation
Indices: 75038128--75038207 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
75038118 CTAGCGGCTA
*
75038128 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTGGTGGCAC
*
75038156 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTGGCAC
75038183 TGCCACAAAATATCTGTATCTGGTG
1 TGCCAC-AAATATCTGT-TCTGGTG
75038208 ACTCTGTCGC
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 23 0.49
28 17 0.36
29 7 0.15
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGCAC
Found at i:75038226 original size:55 final size:56
Alignment explanation
Indices: 75038128--75038232 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
75038118 CTAGCGGCTA
* *
75038128 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * * *
75038183 TGCCACAAAATATCTGTATCTGGTGACTCTGTCGCAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
75038233 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 22 0.52
56 20 0.48
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:75043168 original size:28 final size:28
Alignment explanation
Indices: 75043128--75043188 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
75043118 ACTAGAATAG
*
75043128 CCCTATGTATGCAAAATTACCAT-TATAC
1 CCCTATGTATGCAAAATGACC-TCTATAC
75043156 CCCTATGTATGCAAAATGACCTCTATAC
1 CCCTATGTATGCAAAATGACCTCTATAC
75043184 CCCTA
1 CCCTA
75043189 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
CCCTATGTATGCAAAATGACCTCTATAC
Found at i:75043352 original size:27 final size:27
Alignment explanation
Indices: 75043294--75043383 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
75043284 AGGAAGCGTC
75043294 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
75043322 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
75043349 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
75043378 CTGGTG
1 CTGGTG
75043384 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:75043402 original size:55 final size:56
Alignment explanation
Indices: 75043294--75043408 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
75043284 AGGAAGCGTC
* *
75043294 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
75043349 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
75043405 CTGG
1 CTGG
75043409 CAGACATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:75044842 original size:42 final size:42
Alignment explanation
Indices: 75044795--75044916 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
75044785 TTAGGGTTAC
*
75044795 TGAGACTATGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGACTATATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
75044837 TGAGACT-TCATGTAAGACCATAGT-TAGGCTATTCGCATCGATA
1 TGAGACTAT-ATGTAAGACCATA-TCTGGGATA-TGGCATCGATA
* * * *
75044880 CGAGATTACATGTAAGACCATATCTGGAATATGGCAT
1 TGAGACTATATGTAAGACCATATCTGGGATATGGCAT
75044917 TGGTACGGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.02
42 30 0.47
43 33 0.52
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
TGAGACTATATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:75050831 original size:32 final size:34
Alignment explanation
Indices: 75050795--75050861 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
75050785 GTTAACAGTG
*
75050795 AAACTGGGACAGAG-CCCTT-TTTAGATCACAAT
1 AAACTGGGACAGAGCCCCTTATTTAGATAACAAT
* **
75050827 AAACTGGGCCTTAGCCCCTTATTTAGATAACAAT
1 AAACTGGGACAGAGCCCCTTATTTAGATAACAAT
75050861 A
1 A
75050862 CAGCCCATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 11 0.38
33 5 0.17
34 13 0.45
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (34 bp):
AAACTGGGACAGAGCCCCTTATTTAGATAACAAT
Found at i:75051200 original size:26 final size:26
Alignment explanation
Indices: 75051171--75051223 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
75051161 TCAAACATGC
*
75051171 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGAT-AATTTATCTCCTAGGGGT
* *
75051197 ATTTCGATACTTTATCTCCTAGGGGT
1 ATTTAGATAATTTATCTCCTAGGGGT
75051223 A
1 A
75051224 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGATAATTTATCTCCTAGGGGT
Found at i:75052513 original size:24 final size:24
Alignment explanation
Indices: 75052479--75052579 Score: 125
Period size: 24 Copynumber: 4.2 Consensus size: 24
75052469 CCAACTCCTG
*
75052479 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
75052503 CTCCTTTATCAGCTCCTAAATCATT
1 CTCCTTTATCAGCTCCTAAATC-TT
* *
75052528 -TCCCTTATCAACTCCTAAATAC-T
1 CTCCTTTATCAGCTCCTAAAT-CTT
* *
75052551 CTCCCTTATCAGTTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
75052575 CTCCT
1 CTCCT
75052580 GACATCCTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
23 2 0.03
24 62 0.93
25 3 0.04
ACGTcount: A:0.23, C:0.35, G:0.04, T:0.39
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCTT
Found at i:75057015 original size:43 final size:42
Alignment explanation
Indices: 75056918--75057039 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 42
75056908 GTAGGGTTAC
** * *
75056918 CGAGATTATGTGTAAGACCATATCTGGGATATGGCATTGATA
1 CGAGATTACATGTAAGACCATAGCTGGGATATGGCATCGATA
* * *
75056960 TGAGACTT-CATGTAGGACCATAGCTGGGCTATTGGCATCGATA
1 CGAGA-TTACATGTAAGACCATAGCTGGGATA-TGGCATCGATA
* **
75057003 CGAGATTACATGTAAAACCATATTTGGGATATGGCAT
1 CGAGATTACATGTAAGACCATAGCTGGGATATGGCAT
75057040 TGGTACAGTA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
CGAGATTACATGTAAGACCATAGCTGGGATATGGCATCGATA
Found at i:75060896 original size:19 final size:20
Alignment explanation
Indices: 75060868--75060908 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
75060858 GTCCCCTATA
*
75060868 TTTTTCAGAATTTTC-TAAG
1 TTTTTCAGAAATTTCATAAG
*
75060887 TTTTTTAGAAATTTCATAAG
1 TTTTTCAGAAATTTCATAAG
75060907 TT
1 TT
75060909 ATTAGTTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.29, C:0.07, G:0.10, T:0.54
Consensus pattern (20 bp):
TTTTTCAGAAATTTCATAAG
Found at i:75072881 original size:23 final size:23
Alignment explanation
Indices: 75072851--75072895 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
75072841 TCAAGATCAA
*
75072851 TCATCACCGTCATTAACATAAGC
1 TCATCACCATCATTAACATAAGC
75072874 TCATCACCATCATTAACATAAG
1 TCATCACCATCATTAACATAAG
75072896 TTTACGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.29, G:0.07, T:0.27
Consensus pattern (23 bp):
TCATCACCATCATTAACATAAGC
Found at i:75075954 original size:39 final size:40
Alignment explanation
Indices: 75075837--75076021 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
75075827 GCTACTCGTT
*
75075837 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
75075877 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
75075917 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
75075956 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75075997 CAAA-GCCCTT-GGGACTTAGCCCGGA
1 CAAATG-CCTTCGGGACTTAGCCCGGA
75076022 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 74 0.59
41 17 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75075981 original size:79 final size:82
Alignment explanation
Indices: 75075837--75076021 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
75075827 GCTACTCGTT
* *
75075837 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
75075901 GATTTAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* **
75075917 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
75075979 GGATATGGTCACTTAGCA
65 GGATATAGTAACTTAGCA
75075997 CAAA-GCCCTT-GGGACTTAGCCCGGA
1 CAAATG-CCTTCGGGACTTAGCCCGGA
75076022 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 50 0.55
80 38 0.42
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATATAGTAACTTAGCA
Found at i:75085405 original size:40 final size:39
Alignment explanation
Indices: 75085350--75085492 Score: 177
Period size: 40 Copynumber: 3.6 Consensus size: 39
75085340 CAGATGATAA
75085350 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-ACTATA-T
75085390 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TACTATAT
* * * *
75085430 CCGGGCTAAGTCCCGAAGGCTTTTGTACGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTACTATAT
75085470 CCGGGCTAA--CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75085493 AGGGAGTGGC
Statistics
Matches: 93, Mismatches: 5, Indels: 12
0.85 0.05 0.11
Matches are distributed among these distances:
38 13 0.14
39 1 0.01
40 76 0.82
41 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTACTATAT
Found at i:75093407 original size:40 final size:40
Alignment explanation
Indices: 75093352--75093555 Score: 293
Period size: 40 Copynumber: 5.1 Consensus size: 40
75093342 TGGATGATAA
* *
75093352 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
75093392 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75093432 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
75093472 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * **
75093512 CCGGACTATGTCCCGAAGGCATTTGAGTGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75093552 CCGG
1 CCGG
75093556 TTAAAGCCCG
Statistics
Matches: 149, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 148 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75096504 original size:43 final size:43
Alignment explanation
Indices: 75096372--75096507 Score: 132
Period size: 43 Copynumber: 3.2 Consensus size: 43
75096362 GTGATTATGA
* **
75096372 GTAAGACCATGT-TGGGGACATTGGCATC-ATATTGCGATTGTGT
1 GTAAGACCATGTCT-GGGACATTGGCATCGATA-TGAGATTACGT
* * * * * *
75096415 GTAAGACCATATCTGGGACACTGGCACCGTTATAAGATTTCGT
1 GTAAGACCATGTCTGGGACATTGGCATCGATATGAGATTACGT
* * *
75096458 GTAAGACCATGTCTGGGACATTGGCATCGATATGTGATAACAT
1 GTAAGACCATGTCTGGGACATTGGCATCGATATGAGATTACGT
75096501 GTAAGAC
1 GTAAGAC
75096508 TATACCTGGG
Statistics
Matches: 74, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
43 71 0.96
44 3 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACATTGGCATCGATATGAGATTACGT
Found at i:75103490 original size:21 final size:21
Alignment explanation
Indices: 75103446--75103488 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
75103436 TTTTGAATGA
75103446 TTGATGATGAAATATGAAAGT
1 TTGATGATGAAATATGAAAGT
* *
75103467 TTGATGAT-AGATATTAAAGT
1 TTGATGATGAAATATGAAAGT
75103487 TT
1 TT
75103489 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (21 bp):
TTGATGATGAAATATGAAAGT
Found at i:75104087 original size:43 final size:43
Alignment explanation
Indices: 75104039--75104153 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
75104029 ACATGGTTAT
75104039 GTGTAAGACCATGTCTGGGACATTGGCATCA-TATTACAATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCATTA-TACAATTAC
* * * ** *
75104082 GTGTAAGACTATATCTGGGACATTGGCATCGTTATATGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCATTATACAATTAC
*
75104125 GTGTAAGGCCATGTCTGGGACATTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
75104154 TGATATGTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 60 0.97
44 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCATTATACAATTAC
Found at i:75104173 original size:43 final size:42
Alignment explanation
Indices: 75104039--75104179 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 42
75104029 ACATGGTTAT
* *
75104039 GTGTAAGACCATGTCTGGGACATTGGCA-TCATATTACAATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATTGATATT--GATTAC
* * * * *
75104082 GTGTAAGACTATATCTGGGACATTGGCATCGTTATATGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATTGATAT-TGATTAC
* *
75104125 GTGTAAGGCCATGTCTGGGACATTGGCATTGATATGTGATAAC
1 GTGTAAGACCATGTCTGGGACATTGGCATTGATAT-TGATTAC
* *
75104168 ATGTAAAACCAT
1 GTGTAAGACCAT
75104180 ACCTAGGATA
Statistics
Matches: 78, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
43 74 0.95
44 3 0.04
45 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATTGGCATTGATATTGATTAC
Found at i:75107150 original size:29 final size:29
Alignment explanation
Indices: 75107090--75107157 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
75107080 TAATCGACCG
*
75107090 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
**
75107119 CGCACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
75107148 CGCACACTTA
1 CGCACACTTA
75107158 CCTTTTCCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:75107270 original size:174 final size:174
Alignment explanation
Indices: 75106979--75107306 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
75106969 AACTCAAGGT
* *
75106979 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
75107044 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCGACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
75107109 ACTTTAAACTCGCACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCGCACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
75107153 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
75107218 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
75107283 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCGCACACTTAGTGC
75107307 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCGCACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:75107298 original size:29 final size:30
Alignment explanation
Indices: 75107259--75107337 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
75107249 CTTAATAATC
75107259 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
75107289 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
75107318 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75107338 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:75135155 original size:16 final size:16
Alignment explanation
Indices: 75135134--75135168 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
75135124 GTAGATCGGC
75135134 AAAAGCTAAAAAGCCG
1 AAAAGCTAAAAAGCCG
*
75135150 AAAAGCTAAAAAGCTG
1 AAAAGCTAAAAAGCCG
75135166 AAA
1 AAA
75135169 GTTTGGCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.60, C:0.14, G:0.17, T:0.09
Consensus pattern (16 bp):
AAAAGCTAAAAAGCCG
Found at i:75135485 original size:29 final size:29
Alignment explanation
Indices: 75135387--75135486 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
75135377 GGGCTTAACG
* * * *
75135387 GGCCATATAAAGGTGATTTGAGCCTAATA
1 GGCCATATGAATGTGAATTGAGCCTGATA
* * *
75135416 GGTCATATGAATATGAATTGGGCCTGATA
1 GGCCATATGAATGTGAATTGAGCCTGATA
*
75135445 GGCCATATGAATGTGAATTGAGCCTGATG
1 GGCCATATGAATGTGAATTGAGCCTGATA
75135474 GGCCATATGAATG
1 GGCCATATGAATG
75135487 AGATGGGCCA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (29 bp):
GGCCATATGAATGTGAATTGAGCCTGATA
Found at i:75137723 original size:17 final size:17
Alignment explanation
Indices: 75137701--75137733 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75137691 TTCAAGCATC
75137701 TAATATGAAATTTTATT
1 TAATATGAAATTTTATT
*
75137718 TAATATGAGATTTTAT
1 TAATATGAAATTTTAT
75137734 CATATTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (17 bp):
TAATATGAAATTTTATT
Found at i:75138637 original size:30 final size:29
Alignment explanation
Indices: 75138603--75138662 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
75138593 TTCCCGAGCC
75138603 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGT-AATATGCAAAAGTT
* * * *
75138633 TAGGGGCAAAATTGTAATTTTCAAAAGTT
1 TAGGGGAAAAAGTGTAATATGCAAAAGTT
75138662 T
1 T
75138663 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.30
Consensus pattern (29 bp):
TAGGGGAAAAAGTGTAATATGCAAAAGTT
Found at i:75139439 original size:68 final size:64
Alignment explanation
Indices: 75139322--75139472 Score: 162
Period size: 68 Copynumber: 2.3 Consensus size: 64
75139312 ATACAAATAG
* * * *
75139322 TATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACAGGACAT
1 TATGTAGCTAGGTCGCATGGATGATGCTGAGTGCACACCATGTGTACAAGAGAGCTAC-GG-CA-
75139387 TA
63 TA
* * * *
75139389 TGATGTAGCTAGGTCGCATGGGTGATGCT-ATGTGTACACCATGTAG-ACAAGAGATCTACGGGA
1 T-ATGTAGCTAGGTCGCATGGATGATGCTGA-GTGCACACCATGT-GTACAAGAGAGCTACGGCA
75139452 TA
63 TA
75139454 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
75139473 CGTGGTTCCA
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
64 18 0.25
65 3 0.04
66 1 0.01
67 4 0.05
68 46 0.63
69 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATGCTGAGTGCACACCATGTGTACAAGAGAGCTACGGCATA
Found at i:75139471 original size:64 final size:64
Alignment explanation
Indices: 75139391--75139573 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 64
75139381 GGACATTATG
* * * *
75139391 ATGTAGCTAGGTCGCATGGGTGATGCTATGTGTACACCATGTAGACAAGAGA-TCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGT-TACGAGATAA
* * * * *
75139455 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGTTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGTTACGAGAT
75139520 AA
63 AA
* * * *
75139522 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATG-AGTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAG
75139574 CCGAACTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 2 0.02
63 17 0.18
64 25 0.26
66 22 0.23
67 30 0.31
68 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGTTACGAGATAA
Found at i:75148248 original size:67 final size:64
Alignment explanation
Indices: 75148133--75148389 Score: 218
Period size: 67 Copynumber: 3.9 Consensus size: 64
75148123 TGGATGATAC
* ** * * *
75148133 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTA
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA
75148196 CAG
63 C-G
* * *
75148199 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGATCTAC
1 AGA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
75148264 G
64 G
* * * * * *
75148265 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
75148330 CG
63 CG
* * * *
75148332 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
75148390 CGAACTATAT
Statistics
Matches: 155, Mismatches: 28, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
61 1 0.01
62 19 0.12
63 1 0.01
64 24 0.15
65 3 0.02
66 28 0.18
67 78 0.50
68 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:75155489 original size:42 final size:42
Alignment explanation
Indices: 75155379--75155540 Score: 177
Period size: 42 Copynumber: 3.8 Consensus size: 42
75155369 TAATACCAAC
** * *
75155379 GCCATATCCCAGATATGGTCTTACATGTAA-TATCGTA-TCGAT
1 GCCATATCCCAGATATGGTCTTACA-CAAAGTCTCATAGT-GAT
* * * *
75155421 GTCAATAGCCCAGCTATGGTCTTACACAAAGTCTTATA-TCGAT
1 G-CCATATCCCAGATATGGTCTTACACAAAGTCTCATAGT-GAT
* *
75155464 GCCATATCCTAGATATGGTCTTACACGAAGTCTCATAGTGAT
1 GCCATATCCCAGATATGGTCTTACACAAAGTCTCATAGTGAT
75155506 GCCATATCCCAGATATGGTCTTACACAAAGTCTCA
1 GCCATATCCCAGATATGGTCTTACACAAAGTCTCA
75155541 ATAACCCTAA
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 69 0.68
43 32 0.32
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACACAAAGTCTCATAGTGAT
Found at i:75155537 original size:84 final size:85
Alignment explanation
Indices: 75155379--75155538 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 85
75155369 TAATACCAAC
* * *
75155379 GCCATATCCCAGATATGGTCTTACATGTAATATCGTATCGATGTCAATAGCCCAGCTATGGTCTT
1 GCCATATCCCAGATATGGTCTTACACGTAATATCATATCGATGTCAATAGCCCAGATATGGTCTT
75155444 ACACAAAGTCTTATATCGAT
66 ACACAAAGTCTTATATCGAT
* * * *
75155464 GCCATATCCTAGATATGGTCTTACACG-AAGTCTCATAGT-GATG-CCATATCCCAGATATGGTC
1 GCCATATCCCAGATATGGTCTTACACGTAA-TATCATA-TCGATGTCAATAGCCCAGATATGGTC
75155526 TTACACAAAGTCT
64 TTACACAAAGTCT
75155539 CAATAACCCT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 31 0.47
85 34 0.52
86 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (85 bp):
GCCATATCCCAGATATGGTCTTACACGTAATATCATATCGATGTCAATAGCCCAGATATGGTCTT
ACACAAAGTCTTATATCGAT
Found at i:75158282 original size:43 final size:43
Alignment explanation
Indices: 75158220--75158331 Score: 188
Period size: 43 Copynumber: 2.6 Consensus size: 43
75158210 CCGGCATTAC
*
75158220 ACCTGCTAGGCATGAAGGCCCGAATACACATCACTGGCACGAA
1 ACCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACGAA
* *
75158263 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 ACCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACGAA
*
75158306 ATCTGCTAGGCATGAAGGCCCGAATA
1 ACCTGCTAGGCATGAAGGCCCGAATA
75158332 TAATACCAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.31, C:0.30, G:0.25, T:0.13
Consensus pattern (43 bp):
ACCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:75158380 original size:38 final size:38
Alignment explanation
Indices: 75158324--75158407 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
75158314 GGCATGAAGG
* * *
75158324 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
75158362 CCCTGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
75158400 CCCGGATA
1 CCCGGATA
75158408 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:75177835 original size:64 final size:64
Alignment explanation
Indices: 75177754--75177937 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
75177744 AGACATTATG
* * *
75177754 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
75177818 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGATAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
75177883 AA
63 AA
* * *
75177885 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
75177938 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 25 0.26
66 21 0.22
67 31 0.32
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75180492 original size:29 final size:28
Alignment explanation
Indices: 75180456--75180533 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
75180446 TCATGAGATT
75180456 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
75180486 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
75180513 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
75180534 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:75189392 original size:38 final size:38
Alignment explanation
Indices: 75189228--75189438 Score: 168
Period size: 38 Copynumber: 5.7 Consensus size: 38
75189218 ATGAATGCTG
* * * * *
75189228 TCCGGGCT-AGTCCCGAAGGCTTTGTGCTAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-A
** * *
75189266 TCCGGACTAAGAT-CCGAAGG-ATTTGTGCGAGATACAAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA
* * *
75189304 TTCGGGTTAAG-CCCGAAGGCCTTGTGCGAGATACT-A
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAA
*
75189340 TCCGGGTTAAGTCCCG-AGGCATTCGTGCGAGTTATTAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAA
* *
75189378 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAA
* * *
75189416 ACCGGGCTATGT-CCG-AGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTG
75189439 AACGAGGAGC
Statistics
Matches: 143, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
36 25 0.17
37 37 0.26
38 54 0.38
39 26 0.18
40 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (38 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAA
Found at i:75191307 original size:29 final size:28
Alignment explanation
Indices: 75191271--75191348 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
75191261 TCATGAGATT
75191271 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
75191301 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
75191328 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
75191349 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:75191566 original size:174 final size:174
Alignment explanation
Indices: 75191301--75191628 Score: 559
Period size: 174 Copynumber: 1.9 Consensus size: 174
75191291 AAATTGTACA
* *
75191301 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
75191366 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGCGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
75191431 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
75191475 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
75191540 TGCGC-AACCCAGATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCA
66 TGCGCGAACCCA-ATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCA
75191604 ATTTTGGACAGCGGAAAAGGTAAGT
130 ATTTTGGACAGCGGAAAAGGTAAGT
75191629 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
173 6 0.04
174 138 0.96
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGCGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:75202815 original size:23 final size:22
Alignment explanation
Indices: 75202767--75202817 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
75202757 TTTAATTATA
*
75202767 ATTAAAGAAAATATCATGTGTC
1 ATTAAAGAAAATATCACGTGTC
* * *
75202789 ATTAAAGAGAAGTGTCACGTGTT
1 ATTAAAGA-AAATATCACGTGTC
75202812 ATTAAA
1 ATTAAA
75202818 TTAAATCGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (22 bp):
ATTAAAGAAAATATCACGTGTC
Found at i:75203241 original size:29 final size:29
Alignment explanation
Indices: 75203185--75203242 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
75203175 TTAATCATAA
* * ***
75203185 TTATTGGATTAGGTTGATTTTTGTAAAAT
1 TTATTGGATTAAGTAGATTTTACAAAAAT
75203214 TTATTGGATTAAGTAGATTTTACAAAAAT
1 TTATTGGATTAAGTAGATTTTACAAAAAT
75203243 GCATTTAGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (29 bp):
TTATTGGATTAAGTAGATTTTACAAAAAT
Found at i:75203762 original size:17 final size:16
Alignment explanation
Indices: 75203740--75203780 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
75203730 GTTTTGATGA
75203740 TATTTTTTAATT-ATT
1 TATTTTTTAATTAATT
*
75203755 TTTATTTTTAATTAATT
1 TAT-TTTTTAATTAATT
75203772 TATTTTTTA
1 TATTTTTTA
75203781 TTTTTAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 15 0.68
17 5 0.23
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TATTTTTTAATTAATT
Found at i:75203781 original size:22 final size:20
Alignment explanation
Indices: 75203746--75203787 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
75203736 ATGATATTTT
75203746 TTAATTATTTTTATTTTTAA
1 TTAATTATTTTTATTTTTAA
75203766 TTAATTTATTTTTTATTTTTAA
1 TTAA-TTA-TTTTTATTTTTAA
75203788 ATCTTTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.20
21 3 0.15
22 13 0.65
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TTAATTATTTTTATTTTTAA
Found at i:75204079 original size:142 final size:138
Alignment explanation
Indices: 75203857--75204179 Score: 361
Period size: 142 Copynumber: 2.3 Consensus size: 138
75203847 TATGTTTGTG
* * *
75203857 AAAA-TAATTAAAAATAAAAA-ATTGAAGCAATATGAAAT--AAAAAATACAAATGTGAGTAGTA
1 AAAATTAATTAAAAATAAAAAGATTGAAGCAATATGAAATAAAAAAAACACAAATATGAGGAGTA
** *
75203918 GAGGAACCGAACTCAAGACTTAAAGATATAATTACAACTATCTAACCATCTAA-TGGAAA-AACT
66 GAAAAACCAAACTCAAGACTTAAAGATATAATTACAACTATCTAACCATCTAACT--AAATAACT
*
75203981 AGTATGTTAAA
129 AATATGTT-AA
* * *
75203992 AAACATTAATTAAAAATTTAAAAAGTTTTAAGCAACATGAAATAAAAAAAACACAAATATGAGGA
1 AAA-ATTAATTAAAAA--TAAAAAGATTGAAGCAATATGAAATAAAAAAAACACAAATATGAGGA
* * * * ** *
75204057 GTAGAAAAATCAAACTCGAGACTTAAGGATGTAATTGTAATTATCTAACCATCTAACTAAATAAC
63 GTAGAAAAACCAAACTCAAGACTTAAAGATATAATTACAACTATCTAACCATCTAACTAAATAAC
75204122 TAATATGTTAA
128 TAATATGTTAA
* **
75204133 AAAATTAATTAAAAAATAAAAAGCTTGAAATAATATGAAATAAAAAA
1 AAAATTAATT-AAAAATAAAAAGATTGAAGCAATATGAAATAAAAAA
75204180 TACAAATGTG
Statistics
Matches: 156, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
135 3 0.02
136 1 0.01
137 10 0.06
139 32 0.21
140 22 0.14
141 13 0.08
142 74 0.47
143 1 0.01
ACGTcount: A:0.55, C:0.09, G:0.11, T:0.25
Consensus pattern (138 bp):
AAAATTAATTAAAAATAAAAAGATTGAAGCAATATGAAATAAAAAAAACACAAATATGAGGAGTA
GAAAAACCAAACTCAAGACTTAAAGATATAATTACAACTATCTAACCATCTAACTAAATAACTAA
TATGTTAA
Found at i:75216269 original size:89 final size:89
Alignment explanation
Indices: 75216100--75216269 Score: 227
Period size: 89 Copynumber: 1.9 Consensus size: 89
75216090 ATTCGTTTTC
** * * *
75216100 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTCGTCAATCTTCAGCCTGTTACCCTACTGTTT
1 GATCTGTTTCCCTACTGCTTAGGGGAATAAGATTCGTAAATCCTCAGCCTGTTACCCTACTGCTT
* *
75216165 AAGGGTTTAAGGCTTGTCACCTTT
66 AAGGGGTTAAAGCTTGTCACCTTT
* *
75216189 GATCTGTTTCCCTACTGCTTAGGGTAATAAGA-TCTGTAAATCCTCAGCTTGTTACCCTACTGCT
1 GATCTGTTTCCCTACTGCTTAGGGGAATAAGATTC-GTAAATCCTCAGCCTGTTACCCTACTGCT
75216253 T-AGGGAGTTAAAGCTTG
65 TAAGGG-GTTAAAGCTTG
75216270 GTGGTCTGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
88 6 0.09
89 64 0.91
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (89 bp):
GATCTGTTTCCCTACTGCTTAGGGGAATAAGATTCGTAAATCCTCAGCCTGTTACCCTACTGCTT
AAGGGGTTAAAGCTTGTCACCTTT
Found at i:75222758 original size:40 final size:40
Alignment explanation
Indices: 75222660--75222829 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
75222650 TCCTCGTTCA
* * * *
75222660 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
75222699 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* *
75222739 AATGCCTTCCGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
75222779 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
75222819 AAGGCCTTCGG
1 AATGCCTTCGG
75222830 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 34 0.29
40 83 0.71
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:75222802 original size:80 final size:79
Alignment explanation
Indices: 75222658--75222882 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 79
75222648 GCTCCTCGTT
* * * * * *
75222658 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCCGGACTTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
75222723 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* *
75222737 CGAATGCCTTCCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCCGGACTTAGCCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
** *
75222802 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
* * * * * * * *
75222817 CAAAGGCCTT-CGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCCGGA-CTTAGCCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTAACCCG
75222881 GA
64 GA
75222883 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 38 0.31
80 79 0.65
81 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCCGGACTTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:75222891 original size:41 final size:41
Alignment explanation
Indices: 75222814--75222891 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75222804 TTAGTATCTC
* * *
75222814 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75222855 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75222892 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75227644 original size:9 final size:9
Alignment explanation
Indices: 75227626--75227655 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
75227616 TGCAATGCTG
75227626 ATGC-ATGA
1 ATGCGATGA
75227634 ATGCGATGA
1 ATGCGATGA
75227643 ATGCGATGA
1 ATGCGATGA
75227652 ATGC
1 ATGC
75227656 AAAAAAAGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.23
Consensus pattern (9 bp):
ATGCGATGA
Found at i:75231942 original size:20 final size:20
Alignment explanation
Indices: 75231917--75231959 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
75231907 ATACAGATAC
75231917 CTAAAAACAATAATATGAAG
1 CTAAAAACAATAATATGAAG
75231937 CTAAAAACAATAATATGAAG
1 CTAAAAACAATAATATGAAG
75231957 CTA
1 CTA
75231960 TTAATAATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (20 bp):
CTAAAAACAATAATATGAAG
Found at i:75232094 original size:22 final size:22
Alignment explanation
Indices: 75232069--75232111 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
75232059 TATATATATA
*
75232069 TATAACTACATATATAAATGTG
1 TATAACTACATATAAAAATGTG
**
75232091 TATATGTACATATAAAAATGT
1 TATAACTACATATAAAAATGT
75232112 ACACTAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (22 bp):
TATAACTACATATAAAAATGTG
Found at i:75234967 original size:18 final size:19
Alignment explanation
Indices: 75234921--75234968 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
75234911 ATTAAGTATA
* *
75234921 TATATTATTATATACATATG
1 TATATTATT-TGTACAAATG
75234941 TATATTATTTGTACAAATG
1 TATATTATTTGTACAAATG
75234960 TA-ATTATTT
1 TATATTATTT
75234969 TTACCATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 10 0.38
20 9 0.35
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (19 bp):
TATATTATTTGTACAAATG
Found at i:75244288 original size:29 final size:28
Alignment explanation
Indices: 75244219--75244327 Score: 94
Period size: 28 Copynumber: 3.9 Consensus size: 28
75244209 CACGACCATG
* * *
75244219 TGCCCCTATTTTTCAGATTTTATAGTTT
1 TGCCCCTTTTTTTTAGATTTTATAATTT
** *
75244247 TGCCTATTATTTTTAGATTTTATAATTT
1 TGCCCCTTTTTTTTAGATTTTATAATTT
* *
75244275 TGCCCCCTTTTTTTAGAATTTTACAATTT
1 TGCCCCTTTTTTTTAG-ATTTTATAATTT
* * *
75244304 TG-ACCTTATTTTTCAAATTTTATA
1 TGCCCCTT-TTTTTTAGATTTTATA
75244328 GCTTTACCTA
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
28 44 0.70
29 19 0.30
ACGTcount: A:0.23, C:0.15, G:0.07, T:0.55
Consensus pattern (28 bp):
TGCCCCTTTTTTTTAGATTTTATAATTT
Found at i:75244976 original size:18 final size:18
Alignment explanation
Indices: 75244953--75244989 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
75244943 TTTTATTACT
75244953 AGTGGTTTATCCACAACG
1 AGTGGTTTATCCACAACG
* *
75244971 AGTGGTTTTTCTACAACG
1 AGTGGTTTATCCACAACG
75244989 A
1 A
75244990 TAAGTGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (18 bp):
AGTGGTTTATCCACAACG
Found at i:75248957 original size:18 final size:17
Alignment explanation
Indices: 75248917--75248957 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
75248907 CATGCAGTAT
*
75248917 GGGTTCACACATGGCAT
1 GGGTTCACACATGGCAG
*
75248934 GGGTTCACACATAGGTAG
1 GGGTTCACACAT-GGCAG
75248952 GGGTTC
1 GGGTTC
75248958 TCATATGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (17 bp):
GGGTTCACACATGGCAG
Found at i:75250479 original size:13 final size:14
Alignment explanation
Indices: 75250453--75250490 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
75250443 ACATATATAG
75250453 ATAT-CAGAATCAA
1 ATATACAGAATCAA
75250466 ATATACAGAA-CAA
1 ATATACAGAATCAA
*
75250479 ATATACATAATC
1 ATATACAGAATC
75250491 CTACCCTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (14 bp):
ATATACAGAATCAA
Found at i:75256548 original size:40 final size:40
Alignment explanation
Indices: 75256504--75256624 Score: 127
Period size: 40 Copynumber: 3.0 Consensus size: 40
75256494 TGCTCCAATA
* * *
75256504 TATTTATTTGGCTTTGTGCCAAGCACGCTTTGTGCCGGTG
1 TATTTATTAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
* * * * *
75256544 TATTTA-TCGAGCATTATGCCTAGCAGGATTTGTGTCGGTG
1 TATTTATTAG-GCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
* * *
75256584 TGTTTATCAGGCTTTGTGCCTAGCAGGCTTTGTGCCAGTG
1 TATTTATTAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
75256624 T
1 T
75256625 TGTCAATCAG
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
39 2 0.03
40 61 0.95
41 1 0.02
ACGTcount: A:0.15, C:0.18, G:0.28, T:0.39
Consensus pattern (40 bp):
TATTTATTAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
Found at i:75263668 original size:27 final size:28
Alignment explanation
Indices: 75263638--75263703 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
75263628 GGGCATAATC
75263638 GTCATTTTACCATATA-GGGGTATTACG
1 GTCATTTTACCATATAGGGGGTATTACG
*
75263665 GTCATTTTACCCTATAGGGGGTATTACG
1 GTCATTTTACCATATAGGGGGTATTACG
* *
75263693 ATTATTTTACC
1 GTCATTTTACC
75263704 TATTCTGGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 15 0.43
28 20 0.57
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (28 bp):
GTCATTTTACCATATAGGGGGTATTACG
Found at i:75265077 original size:11 final size:11
Alignment explanation
Indices: 75265061--75265087 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
75265051 TTTCCCCCTT
75265061 ACTAAATCGGC
1 ACTAAATCGGC
75265072 ACTAAATCGGC
1 ACTAAATCGGC
75265083 ACTAA
1 ACTAA
75265088 GTCAAAACTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.26, G:0.15, T:0.19
Consensus pattern (11 bp):
ACTAAATCGGC
Found at i:75271877 original size:40 final size:40
Alignment explanation
Indices: 75271833--75271964 Score: 185
Period size: 40 Copynumber: 3.3 Consensus size: 40
75271823 GGACTAAGAT
* * *
75271833 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
* *
75271873 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
* * *
75271913 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
75271952 CCGAAGGCATTTG
1 CCGAAGGCATTTG
75271965 AACGAGGAGC
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 34 0.42
40 47 0.58
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:75279241 original size:40 final size:40
Alignment explanation
Indices: 75279197--75279328 Score: 185
Period size: 40 Copynumber: 3.3 Consensus size: 40
75279187 GGACTAAGAT
* * *
75279197 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
* *
75279237 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
* * *
75279277 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
75279316 CCGAAGGCATTTG
1 CCGAAGGCATTTG
75279329 AACGAGGAGC
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 34 0.42
40 47 0.58
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:75281681 original size:25 final size:25
Alignment explanation
Indices: 75281652--75281707 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
75281642 GGAAGCTCAT
75281652 AAGAGCCTATATCAGAACGCTCACG
1 AAGAGCCTATATCAGAACGCTCACG
*
75281677 AAGAGCCTATATCAGGACGCTCACG
1 AAGAGCCTATATCAGAACGCTCACG
75281702 AAGAGC
1 AAGAGC
75281708 TGCGTTTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (25 bp):
AAGAGCCTATATCAGAACGCTCACG
Found at i:75283966 original size:24 final size:24
Alignment explanation
Indices: 75283934--75283988 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
75283924 AAATAAGTCA
75283934 ACTCACTTTGTGATGACTCACAGG
1 ACTCACTTTGTGATGACTCACAGG
75283958 ACTCACTTTGTGATGACTCACAGG
1 ACTCACTTTGTGATGACTCACAGG
*
75283982 ACACACT
1 ACTCACT
75283989 CTTTAGACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (24 bp):
ACTCACTTTGTGATGACTCACAGG
Found at i:75286157 original size:80 final size:80
Alignment explanation
Indices: 75286072--75286232 Score: 277
Period size: 80 Copynumber: 2.0 Consensus size: 80
75286062 GGAGCTTTTA
* *
75286072 TAAAAAACGCCGCAAATGCTTAACCTTTAGCGGTATTTTTGTAAAAGCGCCGCTAATAATTTCAA
1 TAAAAAACGCCGCAAATGCTTAACCTTTAGCGGCATTTTTATAAAAGCGCCGCTAATAATTTCAA
75286137 CAAGACGCAGTCGTT
66 CAAGACGCAGTCGTT
* * *
75286152 TAAAAAGCGCCGCTAATGCTTAACCTTTAGCGGCGTTTTTATAAAAGCGCCGCTAATAATTTCAA
1 TAAAAAACGCCGCAAATGCTTAACCTTTAGCGGCATTTTTATAAAAGCGCCGCTAATAATTTCAA
75286217 CAAGACGCAGTCGTT
66 CAAGACGCAGTCGTT
75286232 T
1 T
75286233 CCTTTCGGCC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (80 bp):
TAAAAAACGCCGCAAATGCTTAACCTTTAGCGGCATTTTTATAAAAGCGCCGCTAATAATTTCAA
CAAGACGCAGTCGTT
Found at i:75286158 original size:40 final size:41
Alignment explanation
Indices: 75286113--75286232 Score: 126
Period size: 40 Copynumber: 3.0 Consensus size: 41
75286103 GGTATTTTTG
75286113 TAAAAGCGCCGCTAATAATTTCAACAAGACGCAGTCGTTTA
1 TAAAAGCGCCGCTAATAATTTCAACAAGACGCAGTCGTTTA
** * *
75286154 -AAAAGCGCCGCTAAT-GCTT-AACCTTTAG-CGGC-GT-TTTTA
1 TAAAAGCGCCGCTAATAATTTCAA-C--AAGAC-GCAGTCGTTTA
75286193 TAAAAGCGCCGCTAATAATTTCAACAAGACGCAGTCGTTT
1 TAAAAGCGCCGCTAATAATTTCAACAAGACGCAGTCGTTT
75286233 CCTTTCGGCC
Statistics
Matches: 61, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
38 2 0.03
39 11 0.18
40 36 0.59
41 10 0.16
42 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (41 bp):
TAAAAGCGCCGCTAATAATTTCAACAAGACGCAGTCGTTTA
Found at i:75286928 original size:15 final size:15
Alignment explanation
Indices: 75286893--75286935 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
75286883 TTAGTCGGTA
75286893 AAGG-TTAAGGGTTTT
1 AAGGATTAAGGG-TTT
* *
75286908 ATGGATTATGGGTTT
1 AAGGATTAAGGGTTT
75286923 AAGGATTAAGGGT
1 AAGGATTAAGGGT
75286936 CATGGGTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.37
Consensus pattern (15 bp):
AAGGATTAAGGGTTT
Found at i:75287031 original size:7 final size:7
Alignment explanation
Indices: 75287019--75287154 Score: 67
Period size: 7 Copynumber: 18.7 Consensus size: 7
75287009 ATGAGAGAGG
75287019 GGTTTAT
1 GGTTTAT
75287026 GGTTTAT
1 GGTTTAT
*
75287033 GAGTTAAT
1 G-GTTTAT
* *
75287041 GTTTTAA
1 GGTTTAT
*
75287048 GGTTTAAA
1 GGTTT-AT
*
75287056 GATTT-T
1 GGTTTAT
75287062 GGTTTAT
1 GGTTTAT
*
75287069 GGTTTAA
1 GGTTTAT
* *
75287076 GGGTTAG
1 GGTTTAT
*
75287083 GGTTTAA
1 GGTTTAT
*
75287090 GGTTTAG
1 GGTTTAT
*
75287097 GGGTTAGT
1 GGTTTA-T
* * *
75287105 AGATTAG
1 GGTTTAT
*
75287112 GGTTTAG
1 GGTTTAT
75287119 GGTTTTAT
1 GG-TTTAT
75287127 GGTTTTAT
1 GG-TTTAT
75287135 GGTTTAT
1 GGTTTAT
*
75287142 GTATTTAT
1 G-GTTTAT
75287150 GGTTT
1 GGTTT
75287155 GGGGTTTAAA
Statistics
Matches: 99, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
6 4 0.04
7 59 0.60
8 36 0.36
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (7 bp):
GGTTTAT
Found at i:75287464 original size:26 final size:27
Alignment explanation
Indices: 75287391--75287465 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
75287381 AATAATTTAA
*
75287391 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
75287417 AAATTTCAAGATTTCAAATTTTA-AAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
75287443 AATTTTCAATATTTCAAATTTTA
1 AATTTTCAAGATTTCAAATTTTA
75287466 TCTAATTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 40 0.91
27 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (27 bp):
AATTTTCAAGATTTCAAATTTTAGAAT
Found at i:75287611 original size:18 final size:17
Alignment explanation
Indices: 75287580--75287614 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
75287570 TAGTTGATTG
*
75287580 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
75287597 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
75287615 AATAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:75291590 original size:23 final size:23
Alignment explanation
Indices: 75291560--75291609 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
75291550 AACATTAATC
75291560 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
75291583 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
75291606 AAAT
1 AAAT
75291610 AAACTTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:75292165 original size:241 final size:241
Alignment explanation
Indices: 75291742--75292228 Score: 929
Period size: 241 Copynumber: 2.0 Consensus size: 241
75291732 ATGAATTAAT
75291742 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCGGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCGGACCTTCTCTCCAACCTT
*
75291807 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTAGAAACCTGACGGGTTGCCTTATATCGAG
*
75291872 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCATGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
75291937 AAAAAGACTTGAAAAAAGTTCTATCGAGATCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGATCATTTACTATTGAATA
*
75291983 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCGGACCTTCTCTCCAACCTT
*
75292048 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTAGAAACCTGACGGGTTGCCTTATATCGTG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTAGAAACCTGACGGGTTGCCTTATATCGAG
75292113 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
75292178 AAAAAGACTTGAAAAAAGTTCTATCGAGTTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGATCATTTACTATTGAATA
75292224 TTTAT
1 TTTAT
75292229 ATAACCTTAA
Statistics
Matches: 241, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 241 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCGGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTAGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGATCATTTACTATTGAATA
Found at i:75292689 original size:9 final size:9
Alignment explanation
Indices: 75292675--75292752 Score: 84
Period size: 9 Copynumber: 8.3 Consensus size: 9
75292665 CTTAAATGAA
75292675 TTACATAAC
1 TTACATAAC
75292684 TTACATAAC
1 TTACATAAC
* *
75292693 TCATATAAC
1 TTACATAAC
*
75292702 TTACATAAT
1 TTACATAAC
75292711 TTACATAAC
1 TTACATAAC
*
75292720 TCACATAAC
1 TTACATAAC
*
75292729 GTACATAACAAC
1 TTACAT---AAC
75292741 TTACATAAC
1 TTACATAAC
75292750 TTA
1 TTA
75292753 ACTAATACAT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
9 48 0.86
12 8 0.14
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:75292714 original size:27 final size:27
Alignment explanation
Indices: 75292675--75292737 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
75292665 CTTAAATGAA
*
75292675 TTACATAACTTACATAACTCATATAAC
1 TTACATAACTTACATAACTCACATAAC
*
75292702 TTACATAATTTACATAACTCACATAAC
1 TTACATAACTTACATAACTCACATAAC
*
75292729 GTACATAAC
1 TTACATAAC
75292738 AACTTACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.32
Consensus pattern (27 bp):
TTACATAACTTACATAACTCACATAAC
Found at i:75298336 original size:21 final size:21
Alignment explanation
Indices: 75298292--75298337 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
75298282 AACTTAGAGT
** *
75298292 GGAGGCAGCAGCGCTAGAGGC
1 GGAGGCAGCAGCGAGAGAGCC
*
75298313 GGAGGCAGCAGCGAGGGAGCC
1 GGAGGCAGCAGCGAGAGAGCC
75298334 GGAG
1 GGAG
75298338 CAGAACAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.52, T:0.02
Consensus pattern (21 bp):
GGAGGCAGCAGCGAGAGAGCC
Found at i:75302318 original size:425 final size:426
Alignment explanation
Indices: 75301516--75302370 Score: 1460
Period size: 425 Copynumber: 2.0 Consensus size: 426
75301506 GACTTTGTAA
*
75301516 AAGCCAAAAATAGGAAAATCTTTTTTAATTTATTTTTGATTTTATATTAAATTAGTTTAGGCTAA
1 AAGCCAAAAATAGGAAAATATTTTTTAATTTATTTTTGATTTTATATTAAATTAGTTTAGGCTAA
*
75301581 ATTTAGTAAACCCCATGTATATAAATAGGGGCTTTATGTTCTTAGGAAATCATCCATTACTTTTG
66 ATTTAGTAAACCCCATGTATATAAATAGGGGCTTTATGTTCTTAGGAAATCATCAATTACTTTTG
*
75301646 TATTCCTACTTCAATTTAGAATTGAATTATTCTCCCTGATCCTATTTCCATTTGGAATTGAATTA
131 TATTCCTACTTCAATTTAGAATTGAATTATTCTCCCTGATCCTATTTCCAATTGGAATTGAATTA
* *
75301711 TTTTCTTTTCTCTTTCAATTTGATGTGGGAATTTTGTTCATTTCATTTCAATTTCTTTTTTCTTT
196 TTTTCTTTTCTCTTTCAATTTGACGTGGGAATTTTGTTCATTTCATTTCAATTTCTTTCTTCTTT
* * *
75301776 TTTAATTCGTGCAATTGCTTTCCAAGCCCTTTTATTCCCTAATCTCTTCCATTACCATACAAATT
261 CTAAATTCGTCCAATTGCTTTCCAAGCCCTTTTATTCCCTAATCTCTTCCATTACCATACAAATT
*
75301841 CAATCACCTTCCACAACTTACAAGCATGAATAAATTCCTACTTCACTAAATTTCA-TAGCTTTAG
326 CAATCACCTTCCACAACTTACAAGCATGAATAAATTCATACTTCACTAAATTTCATTAGCTTTAG
*
75301905 TCCGGTGTTCTTTCCGGTTGGGAATCGTAAGATAAG
391 GCCGGTGTTCTTTCCGGTTGGGAATCGTAAGATAAG
*
75301941 AAGCCAAAAATAGGAAAATATTTTTTATTTTATTTTTGATTTTATATTAAATTAGTTTAGGCTAA
1 AAGCCAAAAATAGGAAAATATTTTTTAATTTATTTTTGATTTTATATTAAATTAGTTTAGGCTAA
75302006 ATTTAGTAAACCCCATGTATATAAATAGGGGCTTTATGTTCTTAGGAAATCATCAATTACTTTTG
66 ATTTAGTAAACCCCATGTATATAAATAGGGGCTTTATGTTCTTAGGAAATCATCAATTACTTTTG
* * ** *
75302071 TATTCCTACTTCAATTTAGAATTGGATTATTCTCTCTTTTCCTATTTCCAATTGGACTTGAATTA
131 TATTCCTACTTCAATTTAGAATTGAATTATTCTCCCTGATCCTATTTCCAATTGGAATTGAATTA
*
75302136 TTTTCTTTTCTCTTTCAATTTGACGTGGGAATTTTGTTCATTTCATTTCGATTTCTTTCTTCTTT
196 TTTTCTTTTCTCTTTCAATTTGACGTGGGAATTTTGTTCATTTCATTTCAATTTCTTTCTTCTTT
75302201 CTAAATTCGTCCAATTGCTTTCCAAGCCCTTTTATTCCCTAATCTCTTCCATTACCATACAAATT
261 CTAAATTCGTCCAATTGCTTTCCAAGCCCTTTTATTCCCTAATCTCTTCCATTACCATACAAATT
* * *
75302266 CAATCACCTTCCACAGCTTACAAGCATGAATAAATTCATGCTTCATTAAATTTCATCTTAGCTTT
326 CAATCACCTTCCACAACTTACAAGCATGAATAAATTCATACTTCACTAAATTTCA--TTAGCTTT
* * * * *
75302331 AGGCCGTTGTTCTTTTCGGTTTGGAATTGTGAGATAAG
389 AGGCCGGTGTTCTTTCCGGTTGGGAATCGTAAGATAAG
75302369 AA
1 AA
75302371 TTCGTGCTAC
Statistics
Matches: 402, Mismatches: 25, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
425 361 0.90
428 41 0.10
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.43
Consensus pattern (426 bp):
AAGCCAAAAATAGGAAAATATTTTTTAATTTATTTTTGATTTTATATTAAATTAGTTTAGGCTAA
ATTTAGTAAACCCCATGTATATAAATAGGGGCTTTATGTTCTTAGGAAATCATCAATTACTTTTG
TATTCCTACTTCAATTTAGAATTGAATTATTCTCCCTGATCCTATTTCCAATTGGAATTGAATTA
TTTTCTTTTCTCTTTCAATTTGACGTGGGAATTTTGTTCATTTCATTTCAATTTCTTTCTTCTTT
CTAAATTCGTCCAATTGCTTTCCAAGCCCTTTTATTCCCTAATCTCTTCCATTACCATACAAATT
CAATCACCTTCCACAACTTACAAGCATGAATAAATTCATACTTCACTAAATTTCATTAGCTTTAG
GCCGGTGTTCTTTCCGGTTGGGAATCGTAAGATAAG
Found at i:75304760 original size:49 final size:50
Alignment explanation
Indices: 75304688--75304820 Score: 153
Period size: 50 Copynumber: 2.7 Consensus size: 50
75304678 CTAGTACGCA
* * * ** * *
75304688 TAGTAGCCTGAACTTATTACTACACATGCGACC-AA-TTTTTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCT-GATACACG
* *
75304737 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
*
75304787 CAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
75304821 CACAATAGAT
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 28 0.40
50 40 0.57
51 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
Found at i:75310424 original size:40 final size:40
Alignment explanation
Indices: 75310290--75310427 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
75310280 AAACCAAGTA
* * *
75310290 CCTTCGGGATTTAGC-CGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCTCGGATATAG-TAACTCGCACAAATG
*
75310329 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
* *
75310369 CTTTCGGGACTTAGCTCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
75310409 CCTTCGGGACTTAGCTCGG
1 CCTTCGGGACTTAGCTCGG
75310428 TTATCATCCG
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 15 0.17
40 75 0.83
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
Found at i:75313960 original size:50 final size:50
Alignment explanation
Indices: 75313847--75313979 Score: 180
Period size: 50 Copynumber: 2.7 Consensus size: 50
75313837 CTAGTACGCA
* * ** * *
75313847 TAGTAGCCTGCACTTATTACTACACATGCGACC-AATTATTCGGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATTCGATACACG
75313896 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCA-TCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATTC-GATACACG
*
75313946 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
75313980 CACAATAGAT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
49 33 0.44
50 42 0.56
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATTCGATACACG
Found at i:75320316 original size:37 final size:37
Alignment explanation
Indices: 75320266--75320336 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
75320256 AATAAAGACG
*
75320266 GCTTGAACTGAGTAACTGGGATAGGGTGATTGGTACT
1 GCTTGAACTGAGTAACCGGGATAGGGTGATTGGTACT
75320303 GCTTGAACTGAGTAACCGGGATAGGGTGATTGGT
1 GCTTGAACTGAGTAACCGGGATAGGGTGATTGGT
75320337 TTGTCATCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.24, C:0.11, G:0.37, T:0.28
Consensus pattern (37 bp):
GCTTGAACTGAGTAACCGGGATAGGGTGATTGGTACT
Found at i:75331167 original size:611 final size:611
Alignment explanation
Indices: 75330001--75331224 Score: 2250
Period size: 611 Copynumber: 2.0 Consensus size: 611
75329991 TAAGGCTATA
*
75330001 TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATAGCACCAATTTATG
1 TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATAGCACCAATTCATG
*
75330066 CATATATATACAACCAAATCAGCCACAACAAATACATCAACACCACATTCACATGTTACCATCTA
66 CATATATATACAACCAAATCAGCCACAACAAATACATCAACACCACATTCACATGTTACCAACTA
75330131 ACATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATC
131 ACATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATC
*
75330196 ATTATCTAAATTACTTATACCAATAGTAGACAATTTCAAATGGCCTTATACAGAATGAACTTTCA
196 ATCATCTAAATTACTTATACCAATAGTAGACAATTTCAAATGGCCTTATACAGAATGAACTTTCA
*
75330261 ACCAATATAAGCCAACATATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCT
261 ACCAATATAAGCCAACACATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCT
*
75330326 ATACATGCCATAACTCAAAAATGTTGAAATGATTGGTACCAAAATAATTGTTGATAGTGTGAGTG
326 ATACATGCCATAACTCAAAAATGTTGAAATCATTGGTACCAAAATAATTGTTGATAGTGTGAGTG
* *
75330391 GATCTCCGACAGTCTCCGATCCCCAAGCTAGCTTGGTAACGCTATAAAACAAAGGAAAGAAAGGG
391 GATCTCCGACAGTCTCCGATCCCCAAGCTAGCTTAGTAACACTATAAAACAAAGGAAAGAAAGGG
*
75330456 GAGCAAGCTTTACCACTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACG
456 GAGCAAGCTTTACCACTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACA
*
75330521 TACAATTAGCATGATAAAAATCTTTAGCAAGGGTTCATCACTTATCGAGTTCATTACGTATGAGT
521 TACAATTAGCATGATAAAAATCTTTAGCAAGGGTTCATCACTTATCGAGCTCATTACGTATGAGT
*
75330586 TTTACGTACATACCTGTACCAACTCG
586 TTTACGTACATACCTATACCAACTCG
*
75330612 TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATATCACCAATTCATG
1 TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATAGCACCAATTCATG
75330677 CATATATATACAACCAAATCAGCCACAACAAATACATCAACACCACATTCACATGTTACCAACTA
66 CATATATATACAACCAAATCAGCCACAACAAATACATCAACACCACATTCACATGTTACCAACTA
*
75330742 ACATACATAAACATTACATACACATCAGCTCAAATTATGTAAATTTCCAATCCATGAAAGACATC
131 ACATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATC
*
75330807 ATCATCTAAATTACTTATACCAATAGTAGCCAATTTCAAATGGCCTTATACAGAATGAACTTTCA
196 ATCATCTAAATTACTTATACCAATAGTAGACAATTTCAAATGGCCTTATACAGAATGAACTTTCA
*
75330872 ACCAATATAAGTCAACACATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCT
261 ACCAATATAAGCCAACACATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCT
75330937 ATACATGCCATAACTCAAAAATGTTGAAATCATTGGTACCAAAATAATTGTTGATAGTGTGAGTG
326 ATACATGCCATAACTCAAAAATGTTGAAATCATTGGTACCAAAATAATTGTTGATAGTGTGAGTG
* * * *
75331002 GATCTCTGACAGTCTCCGATCCCCGAGCTAGCTTAGTGACACTATAAAACAAAGGAAAGAAATGG
391 GATCTCCGACAGTCTCCGATCCCCAAGCTAGCTTAGTAACACTATAAAACAAAGGAAAGAAAGGG
* *
75331067 GAGTAAGCTTTACCGCTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACA
456 GAGCAAGCTTTACCACTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACA
* *
75331132 TACAATTAGCATGATAAAAATCTTTAGCGAGGGTTCATCACTTATTGAGCTCATTACGTATGAGT
521 TACAATTAGCATGATAAAAATCTTTAGCAAGGGTTCATCACTTATCGAGCTCATTACGTATGAGT
75331197 TTTACGTACATACCTATACCAACTCG
586 TTTACGTACATACCTATACCAACTCG
75331223 TA
1 TA
75331225 ACATAGCACA
Statistics
Matches: 591, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
611 591 1.00
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (611 bp):
TACCAAGCCATTTTACCACCCTTTTATGCACACACCTACACAACACAACATAGCACCAATTCATG
CATATATATACAACCAAATCAGCCACAACAAATACATCAACACCACATTCACATGTTACCAACTA
ACATACATAAACATTACATACACATCAACTCAAATTATGTAAATTTCCAATCCATGAAAGACATC
ATCATCTAAATTACTTATACCAATAGTAGACAATTTCAAATGGCCTTATACAGAATGAACTTTCA
ACCAATATAAGCCAACACATTTGGCCAAATCAATTAAGACACATAACAAAATAACCAAGTCCCCT
ATACATGCCATAACTCAAAAATGTTGAAATCATTGGTACCAAAATAATTGTTGATAGTGTGAGTG
GATCTCCGACAGTCTCCGATCCCCAAGCTAGCTTAGTAACACTATAAAACAAAGGAAAGAAAGGG
GAGCAAGCTTTACCACTTAGTAAGTTCCTATGCAAATAATAGGTATTATAATCACACATTAAACA
TACAATTAGCATGATAAAAATCTTTAGCAAGGGTTCATCACTTATCGAGCTCATTACGTATGAGT
TTTACGTACATACCTATACCAACTCG
Found at i:75331436 original size:41 final size:41
Alignment explanation
Indices: 75331379--75331479 Score: 202
Period size: 41 Copynumber: 2.5 Consensus size: 41
75331369 ATTCATGGGT
75331379 CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
1 CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
75331420 CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
1 CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
75331461 CTGCTCACACAAGCTGTCA
1 CTGCTCACACAAGCTGTCA
75331480 AGTATTCGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.22
Consensus pattern (41 bp):
CTGCTCACACAAGCTGTCAGTCAAGACGTACCTACATAGTA
Found at i:75333194 original size:25 final size:25
Alignment explanation
Indices: 75333166--75333253 Score: 115
Period size: 25 Copynumber: 3.5 Consensus size: 25
75333156 CATGCAATAC
**
75333166 GCCACAAAAACTTTACTGATAACTT
1 GCCACAAAGGCTTTACTGATAACTT
* *
75333191 GCCACAAAGGCTTTAATGATAA-TCC
1 GCCACAAAGGCTTTACTGATAACT-T
*
75333216 GCCACAAAGGCTTTACAGATAACTT
1 GCCACAAAGGCTTTACTGATAACTT
75333241 GCCACAAAGGCTT
1 GCCACAAAGGCTT
75333254 GGTTTGATTT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
24 1 0.02
25 52 0.96
26 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (25 bp):
GCCACAAAGGCTTTACTGATAACTT
Found at i:75335655 original size:16 final size:16
Alignment explanation
Indices: 75335634--75335664 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75335624 CTATGCATGC
*
75335634 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
75335650 AAAATACAAAAGACA
1 AAAATACAAAAGACA
75335665 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:75336394 original size:67 final size:67
Alignment explanation
Indices: 75336286--75336411 Score: 216
Period size: 67 Copynumber: 1.9 Consensus size: 67
75336276 CAATTACAGG
* * *
75336286 TAGTTTACTATTGTTTCAATCGCATGATACCCCCGATCAGGGCATTCCACTCATACCCTTCTACT
1 TAGTTTACTATTATTTCAATCGCACGATACCCCCGAGCAGGGCATTCCACTCATACCCTTCTACT
75336351 CT
66 CT
*
75336353 TAGTTTACTATTATTTCAATCGCACGATACCCCCGAGCAGGGCATTCCATTCATACCCT
1 TAGTTTACTATTATTTCAATCGCACGATACCCCCGAGCAGGGCATTCCACTCATACCCT
75336412 ACTGTTCTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.33
Consensus pattern (67 bp):
TAGTTTACTATTATTTCAATCGCACGATACCCCCGAGCAGGGCATTCCACTCATACCCTTCTACT
CT
Found at i:75340562 original size:17 final size:16
Alignment explanation
Indices: 75340542--75340574 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
75340532 TCAAGTGGGG
75340542 ATTTTATTTGTTATTTT
1 ATTTTATTT-TTATTTT
75340559 ATTTTATTTTTATTTT
1 ATTTTATTTTTATTTT
75340575 CTTTCCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (16 bp):
ATTTTATTTTTATTTT
Found at i:75341051 original size:38 final size:38
Alignment explanation
Indices: 75341008--75341096 Score: 151
Period size: 38 Copynumber: 2.3 Consensus size: 38
75340998 AGTGTGGTTA
*
75341008 TGTGGGCCACACGGGTGTGTGGGTTCTAGGACATGCCG
1 TGTGGGCCACACGGGTGTATGGGTTCTAGGACATGCCG
*
75341046 TGTGGGCCACACGGGTGTATGGGTTCTAGGACATGTCG
1 TGTGGGCCACACGGGTGTATGGGTTCTAGGACATGCCG
*
75341084 TGTGGGACACACG
1 TGTGGGCCACACG
75341097 AGTGATGTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.16, C:0.20, G:0.40, T:0.24
Consensus pattern (38 bp):
TGTGGGCCACACGGGTGTATGGGTTCTAGGACATGCCG
Found at i:75341089 original size:21 final size:21
Alignment explanation
Indices: 75341024--75341089 Score: 50
Period size: 21 Copynumber: 3.3 Consensus size: 21
75341014 CCACACGGGT
*
75341024 GTGTGGGTTCTAGGACATGCC
1 GTGTGGGTTCTAGGACATGTC
* * **
75341045 GTGTGGG--CCA-CACGGGT-
1 GTGTGGGTTCTAGGACATGTC
*
75341062 GTATGGGTTCTAGGACATGTC
1 GTGTGGGTTCTAGGACATGTC
75341083 GTGTGGG
1 GTGTGGG
75341090 ACACACGAGT
Statistics
Matches: 30, Mismatches: 11, Indels: 8
0.61 0.22 0.16
Matches are distributed among these distances:
17 6 0.20
18 3 0.10
19 4 0.13
20 4 0.13
21 13 0.43
ACGTcount: A:0.14, C:0.17, G:0.42, T:0.27
Consensus pattern (21 bp):
GTGTGGGTTCTAGGACATGTC
Found at i:75344426 original size:49 final size:49
Alignment explanation
Indices: 75344310--75344442 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 49
75344300 TAGGATATAA
* * *
75344310 TGCCGATGCCATGTCCTAGATATGGTCTTACACT-AGCTCTCACGTTAAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCCCACGTTAAG
* **
75344359 T--CGATGCCATGTCTCAGACATGGTCTTACACTGACTCCCAC-TATCCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACGT-TAAG
*
75344406 TGCCGATGCCATGTCCCAGACATGGTCTTATACTGAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
75344443 ACATCATGAA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
46 1 0.01
47 37 0.51
48 1 0.01
49 33 0.46
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACGTTAAG
Found at i:75352721 original size:112 final size:112
Alignment explanation
Indices: 75352536--75352752 Score: 398
Period size: 112 Copynumber: 1.9 Consensus size: 112
75352526 CACGGTCGTA
* *
75352536 TCTCTACCTGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACG
1 TCTCTACCCGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACA
*
75352601 GCCATACCACACGCCCATGGGGTATCCGTGTGTCACACACAGCCGTG
66 GCCATACCACACGCCCATAGGGTATCCGTGTGTCACACACAGCCGTG
75352648 TCTCTACCCGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACA
1 TCTCTACCCGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACA
*
75352713 GCCGTACCACACGCCCATAGGGTATCCGTGTGTCACACAC
66 GCCATACCACACGCCCATAGGGTATCCGTGTGTCACACAC
75352753 GGCCTAGACA
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
112 101 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (112 bp):
TCTCTACCCGTGTGTTTACTACCATGCATTCTGACTTAAAAATTTTCAGGTGCAGGGGACACACA
GCCATACCACACGCCCATAGGGTATCCGTGTGTCACACACAGCCGTG
Done.