Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 229 of 356
Found at i:75354620 original size:46 final size:46
Alignment explanation
Indices: 75354450--75354619 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
75354440 TGTAACACGC
* ** *
75354450 CCATAAGTGAACTCGAACTCAACTCAACAAGCTCGGGTGTTCTCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGACGTTCACAT
* *
75354496 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCG---GAC--GTTCACAT
* * *
75354546 -C-TCA-CGAACTCGAACTCAACTCAACGAG-TCCGGACGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCT-CGGACGTTCACAT
75354589 CCATAAGTGAACTC-AGACTCAACTCAACGAG
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAG
75354620 TTCAGATGCC
Statistics
Matches: 101, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 3 0.03
46 55 0.54
47 24 0.24
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGACGTTCACAT
Found at i:75357963 original size:20 final size:19
Alignment explanation
Indices: 75357940--75357998 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 19
75357930 TAATTTTATT
75357940 TTAATAGTTTTAATATTAAA
1 TTAATA-TTTTAATATTAAA
* * *
75357960 TTAAATATCTTGATAGTAAA
1 TT-AATATTTTAATATTAAA
* *
75357980 TTATTAATTTAATATTAAA
1 TTAATATTTTAATATTAAA
75357999 GTGATTACCT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
19 12 0.40
20 14 0.47
21 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (19 bp):
TTAATATTTTAATATTAAA
Found at i:75362632 original size:15 final size:15
Alignment explanation
Indices: 75362612--75362644 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
75362602 ATTCTCTCAA
75362612 ATGGTATCATACTTT
1 ATGGTATCATACTTT
75362627 ATGGTATCATACTTT
1 ATGGTATCATACTTT
75362642 ATG
1 ATG
75362645 ATATGGTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45
Consensus pattern (15 bp):
ATGGTATCATACTTT
Found at i:75363679 original size:16 final size:17
Alignment explanation
Indices: 75363658--75363689 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
75363648 ACGATAATGA
75363658 TAAAAATAT-TTTATAT
1 TAAAAATATATTTATAT
75363674 TAAAAATATATTTATA
1 TAAAAATATATTTATA
75363690 AAAATGGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAAAATATATTTATAT
Found at i:75364136 original size:72 final size:72
Alignment explanation
Indices: 75364019--75364161 Score: 259
Period size: 72 Copynumber: 2.0 Consensus size: 72
75364009 CTTTCAAGTT
75364019 GGTCTCCCTAATGGGTAACAATTCTTCTTTTCTTTTCAAGCTTTATGAATTAATCTCTAAAACAT
1 GGTCTCCCTAATGGGTAACAATTCTTCTTTTCTTTTCAAGCTTTATGAATTAATCTCTAAAACAT
75364084 TAGAATC
66 TAGAATC
* * *
75364091 GGTCTCCCTAATTGGTAACAATTCTTCTTTTCTTTTCAAGCTTTATGGATTAATCTCTAGAACAT
1 GGTCTCCCTAATGGGTAACAATTCTTCTTTTCTTTTCAAGCTTTATGAATTAATCTCTAAAACAT
75364156 TAGAAT
66 TAGAAT
75364162 TGTGACTTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (72 bp):
GGTCTCCCTAATGGGTAACAATTCTTCTTTTCTTTTCAAGCTTTATGAATTAATCTCTAAAACAT
TAGAATC
Found at i:75364751 original size:106 final size:105
Alignment explanation
Indices: 75364626--75364837 Score: 379
Period size: 106 Copynumber: 2.0 Consensus size: 105
75364616 AACCAATATG
75364626 GAAAAAAAGTCAAACAAGTCAAGTTTAGCATTTAAATCCTTCTAGTCACTCAATGATTTAGAGCT
1 GAAAAAAAGTCAAACAAGTCAAGTTTAGCATTTAAATCCTTCTAGTCACTCAATGATTTAGAGCT
75364691 AAGATTACAAATTATCATCCAAATAATAGAGATAATATAA
66 AAGATTACAAATTATCATCCAAATAATAGAGATAATATAA
* * *
75364731 GAAAAAAATGTCAAATAAGTCAAGTTTAGCCTTTAAATCCTTCTAGTCATTCAATGATTTAGAGC
1 GAAAAAAA-GTCAAACAAGTCAAGTTTAGCATTTAAATCCTTCTAGTCACTCAATGATTTAGAGC
*
75364796 TAAGATTACAAATTATCATCCAAATGATAGAGATAATATAA
65 TAAGATTACAAATTATCATCCAAATAATAGAGATAATATAA
75364837 G
1 G
75364838 TAAAGCATAT
Statistics
Matches: 102, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
105 8 0.08
106 94 0.92
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (105 bp):
GAAAAAAAGTCAAACAAGTCAAGTTTAGCATTTAAATCCTTCTAGTCACTCAATGATTTAGAGCT
AAGATTACAAATTATCATCCAAATAATAGAGATAATATAA
Found at i:75368360 original size:79 final size:79
Alignment explanation
Indices: 75368229--75368459 Score: 354
Period size: 79 Copynumber: 2.9 Consensus size: 79
75368219 TCACATGCAC
75368229 GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
1 GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
75368294 AAAGTAACGTAGAG
66 AAAGTAACGTAGAG
* *
75368308 GGTTATAAATTAGAATTAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
1 GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
75368373 AAAGTAACGTAGAG
66 AAAGTAACGTAGAG
* * * ** * * * *
75368387 GGTTATAAATCAGAATCAATAATAATCAATCTAACATAATCATATATCACATATTCTTTATCAAC
1 GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
*
75368452 AGAGTAAC
66 AAAGTAAC
75368460 ATAAAGTCAT
Statistics
Matches: 138, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 138 1.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (79 bp):
GGTTATAAATCAGAATCAGTAACAATCAGTCTAACATGTTCAGATATCGCATATTCCTCATCAAC
AAAGTAACGTAGAG
Found at i:75370207 original size:22 final size:22
Alignment explanation
Indices: 75370172--75370213 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
75370162 TTTATATGAA
** *
75370172 ATATGATATGCTCTGTTATGGG
1 ATATGATAACCTCTGATATGGG
75370194 ATATGATAACCTCTGATATG
1 ATATGATAACCTCTGATATG
75370214 TTATAAGATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (22 bp):
ATATGATAACCTCTGATATGGG
Found at i:75370984 original size:21 final size:20
Alignment explanation
Indices: 75370960--75371005 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
75370950 ATGTATAAAA
* *
75370960 AAAAGTGTACCAAAAAAATTT
1 AAAA-TGTACAAAAAAAAGTT
*
75370981 AAAATGTATAAAAAAAAGTT
1 AAAATGTACAAAAAAAAGTT
75371001 AAAAT
1 AAAAT
75371006 AAAGCTTGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.63, C:0.04, G:0.09, T:0.24
Consensus pattern (20 bp):
AAAATGTACAAAAAAAAGTT
Found at i:75371388 original size:14 final size:15
Alignment explanation
Indices: 75371371--75371412 Score: 59
Period size: 14 Copynumber: 2.7 Consensus size: 15
75371361 ATGAAATGTA
75371371 AAAAAATAAATTA-T
1 AAAAAATAAATTAGT
75371385 AAAAAATAAATTAGT
1 AAAAAATAAATTAGT
75371400 ACAAAAATTAAAT
1 A-AAAAA-TAAAT
75371413 CTTGCAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 13 0.52
15 2 0.08
16 5 0.20
17 5 0.20
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (15 bp):
AAAAAATAAATTAGT
Found at i:75374967 original size:3 final size:3
Alignment explanation
Indices: 75374948--75374986 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
75374938 GATTCAGGAA
* *
75374948 ATG ACG ATG ATG GTG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
75374987 GTGGTGGTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.36, T:0.31
Consensus pattern (3 bp):
ATG
Found at i:75379353 original size:50 final size:48
Alignment explanation
Indices: 75379242--75379359 Score: 137
Period size: 48 Copynumber: 2.4 Consensus size: 48
75379232 TATGAGAGTC
* * ** *
75379242 AGTGTAAGTCCATGTCTGGAACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAGACGAAAGCT
* * * *
75379290 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAG--ACGAAAGCT
75379340 AGTGTAAGACCATGTCTGGG
1 AGTGTAAGACCATGTCTGGG
75379360 GCAGTGTAAG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 33 0.57
50 25 0.43
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAGACGAAAGCT
Found at i:75379368 original size:22 final size:22
Alignment explanation
Indices: 75379340--75379381 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75379330 TATGAAAGCT
75379340 AGTGTAAGACCATGTCTGGGGC
1 AGTGTAAGACCATGTCTGGGGC
* *
75379362 AGTGTAAGGCCATGTTTGGG
1 AGTGTAAGACCATGTCTGGG
75379382 ACATGGCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.38, T:0.26
Consensus pattern (22 bp):
AGTGTAAGACCATGTCTGGGGC
Found at i:75379407 original size:72 final size:72
Alignment explanation
Indices: 75379290--75379434 Score: 290
Period size: 72 Copynumber: 2.0 Consensus size: 72
75379280 GACGAGAGCT
75379290 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
1 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
75379355 CTGGGGC
66 CTGGGGC
75379362 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
1 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
75379427 CTGGGGC
66 CTGGGGC
75379434 A
1 A
75379435 TGGCATCAGC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (72 bp):
AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGT
CTGGGGC
Found at i:75379437 original size:50 final size:50
Alignment explanation
Indices: 75379362--75379542 Score: 227
Period size: 50 Copynumber: 3.6 Consensus size: 50
75379352 TGTCTGGGGC
* *
75379362 AGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGACATATGAAAGCT
* * * * * * *
75379412 AGTGTAAGACCATGTCTGGGGCATGGCATCAGCACCGACAGATGTAAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGACATATGAAAGCT
* * * * *
75379462 AGTGTAAGACCATGTTTGGGACATGGCTTCGGCCTCGATATATGAGAGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGACATATGAAAGCT
*
75379512 AGTGTAAGAGCATGTTTGGGACATGGCATCG
1 AGTGTAAGACCATGTTTGGGACATGGCATCG
75379543 ACTTTGATGT
Statistics
Matches: 108, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 108 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (50 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGACATATGAAAGCT
Found at i:75379466 original size:122 final size:120
Alignment explanation
Indices: 75379241--75379481 Score: 302
Period size: 122 Copynumber: 2.0 Consensus size: 120
75379231 TTATGAGAGT
* ** * * *
75379241 CAGTGTAAGTCCATGTCTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGGCCATGTT
1 CAGTGTAAGGCCATGTCTGGAACATGGCATCGGCACCGAGACGAAAGCTAGTGTAAGACCATGTC
* * * * *
75379306 TGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATGTCTGGGG
66 TGGGACATGGCATCAGCACCGACAGATGAAAGCCAGTGTAAGACCATGTCTGGGG
* * * *
75379361 CAGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATG
1 CAGTGTAAGGCCATGTCTGGAACATGGCATCGGCACCGAG--ACGAAAGCTAGTGTAAGACCATG
* * *
75379426 TCTGGGGCATGGCATCAGCACCGACAGATGTAAGCCAGTGTAAGACCATGTTTGGG
64 TCTGGGACATGGCATCAGCACCGACAGATGAAAGCCAGTGTAAGACCATGTCTGGG
75379482 ACATGGCTTC
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
120 34 0.34
122 67 0.66
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (120 bp):
CAGTGTAAGGCCATGTCTGGAACATGGCATCGGCACCGAGACGAAAGCTAGTGTAAGACCATGTC
TGGGACATGGCATCAGCACCGACAGATGAAAGCCAGTGTAAGACCATGTCTGGGG
Found at i:75379537 original size:100 final size:100
Alignment explanation
Indices: 75379361--75379541 Score: 281
Period size: 100 Copynumber: 1.8 Consensus size: 100
75379351 ATGTCTGGGG
*
75379361 CAGTGTAAGGCCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATG
*
75379426 TCTGGGGCATGGCATCAGCACCGACAGATGTAAGC
66 TCTGGGACATGGCATCAGCACCGACAGATGTAAGC
* * * * * *
75379461 CAGTGTAAGACCATGTTTGGGACATGGCTTCGGCCTCGATATATGAGAGTTAGTGTAAGAGCATG
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATG
*
75379526 TTTGGGACATGGCATC
66 TCTGGGACATGGCATC
75379542 GACTTTGATG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 72 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (100 bp):
CAGTGTAAGACCATGTTTGGGACATGGCATCGGCCCCGAGATATGAAAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCAGCACCGACAGATGTAAGC
Found at i:75386591 original size:20 final size:21
Alignment explanation
Indices: 75386568--75386606 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
75386558 TTTCATCTTC
*
75386568 AACAACTT-CTTTTCTTCAGT
1 AACAACTTCCTCTTCTTCAGT
75386588 AACAACTTCCTCTTCTTCA
1 AACAACTTCCTCTTCTTCA
75386607 ATAATAGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.26, C:0.31, G:0.03, T:0.41
Consensus pattern (21 bp):
AACAACTTCCTCTTCTTCAGT
Found at i:75395497 original size:42 final size:43
Alignment explanation
Indices: 75395385--75395502 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 43
75395375 AATGCCTTAC
* **
75395385 CCCAGATATGGTCTTGCATGTAATCTCATATCGATGCCAATAG
1 CCCAGATATGGTCTTACACATAATCTCATATCGATGCCAATAG
* * * *
75395428 CCCAGCTATGGTCTTACACGA-AGTCTCATATCGATG-CGATAT
1 CCCAGATATGGTCTTACAC-ATAATCTCATATCGATGCCAATAG
*
75395470 CTCAGATATGGTCTTACACATAATCTCAGTATC
1 CCCAGATATGGTCTTACACATAATCTCA-TATC
75395503 CCTAATGTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.02
42 27 0.44
43 34 0.55
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (43 bp):
CCCAGATATGGTCTTACACATAATCTCATATCGATGCCAATAG
Found at i:75402016 original size:42 final size:42
Alignment explanation
Indices: 75401903--75402022 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
75401893 AGTATCGTAC
* *
75401903 CAATGCCATATCGCAGATATGGTCTTACATATAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACATAATCTCATAT
* * *
75401945 CGATGCCAATAACCCAGCTATGGTCTTACACA-AAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACATAA-TCTCATAT
* *
75401988 CAATGCCATATCCCAGGTATGGTCTTACACGTAAT
1 CAATGCCATATCCCAGATATGGTCTTACACATAAT
75402023 ATTAGTAACC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 30 0.45
43 36 0.55
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACATAATCTCATAT
Found at i:75409986 original size:30 final size:30
Alignment explanation
Indices: 75409952--75410019 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 30
75409942 AATCTGATAA
*
75409952 ATAAAAACTAAATTATTAAA-AATAAAAAAT
1 ATAAAAACTAAATT-TTAAATAACAAAAAAT
* *
75409982 ATAAAAATTAAATTTTAAATTTACAAAAAAT
1 ATAAAAACTAAATTTTAAA-TAACAAAAAAT
75410013 ATAAAAA
1 ATAAAAA
75410020 ATTATAGCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 13 0.39
31 15 0.45
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (30 bp):
ATAAAAACTAAATTTTAAATAACAAAAAAT
Found at i:75412291 original size:36 final size:36
Alignment explanation
Indices: 75412219--75412291 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 36
75412209 TCGTCCACTC
** **
75412219 AATCAACTTAATATGAAGACCTAGGATGTGTTAAAG
1 AATCAACTTAATATGAAGACCTAGGACATGCAAAAG
* * *
75412255 AATCAAGTTTATATGAAGACTTAGGACATGCAAAAG
1 AATCAACTTAATATGAAGACCTAGGACATGCAAAAG
75412291 A
1 A
75412292 CCTAATTTGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.26
Consensus pattern (36 bp):
AATCAACTTAATATGAAGACCTAGGACATGCAAAAG
Found at i:75413371 original size:15 final size:16
Alignment explanation
Indices: 75413335--75413364 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75413325 AAATATCATT
75413335 TATTTCATTATATCAA
1 TATTTCATTATATCAA
75413351 TATTTCA-TATATCA
1 TATTTCATTATATCA
75413365 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:75416619 original size:17 final size:17
Alignment explanation
Indices: 75416597--75416633 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
75416587 TTATCCTTTG
*
75416597 TTTATTTTCCTTATTTA
1 TTTATTTTCATTATTTA
75416614 TTTATTTTCATTATTTA
1 TTTATTTTCATTATTTA
75416631 TTT
1 TTT
75416634 TTATCTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATTTTCATTATTTA
Found at i:75416645 original size:19 final size:16
Alignment explanation
Indices: 75416601--75416658 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 16
75416591 CCTTTGTTTA
*
75416601 TTTTCCTTATTTATTT
1 TTTTCATTATTTATTT
75416617 ATTTTCATTATTTATTT
1 -TTTTCATTATTTATTT
*
75416634 TTATCTCAATTATCTATTT
1 TT-T-TC-ATTATTTATTT
75416653 TTTTCA
1 TTTTCA
75416659 CATCCCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.08
17 18 0.50
18 3 0.08
19 12 0.33
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTCATTATTTATTT
Found at i:75419721 original size:24 final size:24
Alignment explanation
Indices: 75419685--75419818 Score: 110
Period size: 24 Copynumber: 5.6 Consensus size: 24
75419675 AAGTGTAGGA
* *
75419685 TCTGTAACTGTATCTACATCTATG
1 TCTGTATCAGTATCTACATCTATG
* * *
75419709 TCTGTATCAGTATCTATATATGTG
1 TCTGTATCAGTATCTACATCTATG
* * * *
75419733 TTTGTATCAGTACCTACAACTATA
1 TCTGTATCAGTATCTACATCTATG
* * * *
75419757 TTTGTAATC-GTATTTGCATCTGTG
1 TCTGT-ATCAGTATCTACATCTATG
* *
75419781 -CTGTATCAGTATCTGCATCTAAG
1 TCTGTATCAGTATCTACATCTATG
75419804 TCTGTATCAGTATCT
1 TCTGTATCAGTATCT
75419819 GCAACTGTAT
Statistics
Matches: 85, Mismatches: 22, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
22 3 0.04
23 15 0.18
24 64 0.75
25 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.43
Consensus pattern (24 bp):
TCTGTATCAGTATCTACATCTATG
Found at i:75419833 original size:24 final size:24
Alignment explanation
Indices: 75419711--75419835 Score: 78
Period size: 24 Copynumber: 5.2 Consensus size: 24
75419701 CATCTATGTC
** *
75419711 TGTATCAGTATCTATATA-TGTGTT
1 TGTATCAGTATCTGCA-ACTGTATT
* * *
75419735 TGTATCAGTACCTACAACTATATT
1 TGTATCAGTATCTGCAACTGTATT
* * **
75419759 TGTAATC-GTATTTGCATCTGT-GC
1 TGT-ATCAGTATCTGCAACTGTATT
* * *
75419782 TGTATCAGTATCTGCATCT-AAGTC
1 TGTATCAGTATCTGCAACTGTA-TT
75419806 TGTATCAGTATCTGCAACTGTATT
1 TGTATCAGTATCTGCAACTGTATT
75419830 TGTATC
1 TGTATC
75419836 TGAACTGCAT
Statistics
Matches: 78, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
22 3 0.04
23 15 0.19
24 56 0.72
25 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.42
Consensus pattern (24 bp):
TGTATCAGTATCTGCAACTGTATT
Found at i:75421885 original size:31 final size:31
Alignment explanation
Indices: 75421847--75421956 Score: 202
Period size: 31 Copynumber: 3.5 Consensus size: 31
75421837 TTTAACGGTT
75421847 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
75421878 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
75421909 ACTGGGCTGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
75421940 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
75421957 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:75422027 original size:42 final size:42
Alignment explanation
Indices: 75421980--75422071 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
75421970 TGGCCCATAG
* * ** *
75421980 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTAAATATCACATGAAATACCAATGAATGTATGCAA
* *
75422022 GCCCATTTAAATATCATATGAAATACCATTGAATGTATGCAA
1 GCCCATTTAAATATCACATGAAATACCAATGAATGTATGCAA
75422064 GCCCATTT
1 GCCCATTT
75422072 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTAAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:75422288 original size:26 final size:26
Alignment explanation
Indices: 75422204--75422339 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
75422194 CTAGAGGCCT
*
75422204 AGCCTCTTTT-AAT-AACTGGGTCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* **
75422228 AGCGCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
75422253 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* **
75422279 AGCCATTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
75422305 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
75422331 AGCCCTTTT
1 AGCCCTTTT
75422340 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 4 0.04
25 31 0.32
26 56 0.58
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:75422322 original size:52 final size:50
Alignment explanation
Indices: 75422204--75422339 Score: 197
Period size: 52 Copynumber: 2.7 Consensus size: 50
75422194 CTAGAGGCCT
*
75422204 AGCCTCTTTT-AAT-AACTGGGTCA-AAGCGCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGC-CTTTTCGGTAAACTGGGGCAA
75422253 AGCCCTTTTCAATAAACTGGGGCATAAGCCATTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCC-TTTTCGGTAAACTGGGGCA-A
75422305 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAG-CCTTTT
75422340 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 1, Indels: 9
0.89 0.01 0.10
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 10 0.12
51 23 0.29
52 33 0.41
53 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (50 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCTTTTCGGTAAACTGGGGCAA
Found at i:75422413 original size:20 final size:20
Alignment explanation
Indices: 75422388--75422444 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
75422378 TTATGAATAC
75422388 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
**
75422408 ATCATGTGCATTTTTTACAT
1 ATCATGTGCATTTCATACAT
*
75422428 ATCATGTGCATATCATA
1 ATCATGTGCATTTCATA
75422445 TCAATCATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.42
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:75423224 original size:27 final size:27
Alignment explanation
Indices: 75423163--75423227 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
75423153 GGCGTATTCA
*
75423163 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCTTACAAGGGTATTACGG
* *
75423190 TCACTTTACCTTACAGGGGCT-TTACGG
1 TCATTTTACCTTACAAGGG-TATTACGG
*
75423217 TCTTTTTACCT
1 TCATTTTACCT
75423228 ATTAGGGGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATTTTACCTTACAAGGGTATTACGG
Found at i:75423300 original size:27 final size:27
Alignment explanation
Indices: 75423257--75423479 Score: 170
Period size: 27 Copynumber: 8.3 Consensus size: 27
75423247 TTTCATCCTA
* * *
75423257 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
**
75423284 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
75423311 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
75423338 TGAGGGTATTTCGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
75423364 CCAGTGGTATTTTGGTAATTTTACTAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* *
75423391 CTAGGGGTGTTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * * **
75423418 CTAGGGGTATTGTGGTAATTCTATCCTA-
1 C-AAGGGTATTTTGGTAATTTTA-CAAAT
* * *
75423446 CAGGGGTATTTTAGTAATTTCAC-AAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
75423472 CAAGGGTA
1 CAAGGGTA
75423480 AAACGGTAAT
Statistics
Matches: 159, Mismatches: 31, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
25 1 0.01
26 11 0.07
27 142 0.89
28 5 0.03
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:75423454 original size:81 final size:80
Alignment explanation
Indices: 75423259--75423465 Score: 206
Period size: 81 Copynumber: 2.5 Consensus size: 80
75423249 TCATCCTACA
* * * * * *
75423259 AGGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTG
1 AGGGTATTTCGGTAATTCTACAAACCAGGGGTATTT-TGTAATTTTCTAAATCAGGGGTATTTTG
*
75423324 GTAATTTTACAAATTG
65 GTAATTTTACAAATAG
* * * *
75423340 AGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACTAACT-AGGGGTGTTTT
1 AGGGTATTTCGGTAATTCTACAAACCAGGGGTATTTT-GTAATTTT-CTAAATCAGGGGTATTTT
75423404 GGTAATTTTACAAACTAG
64 GGTAATTTTACAAA-TAG
**
75423422 -GGGTATTGT-GGTAATTCTATCCTA-CAGGGGTATTTTAGTAATTT
1 AGGGTATT-TCGGTAATTCTA-CAAACCAGGGGTATTTT-GTAATTT
75423466 CACAATCAAG
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
80 1 0.01
81 95 0.90
82 9 0.09
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.41
Consensus pattern (80 bp):
AGGGTATTTCGGTAATTCTACAAACCAGGGGTATTTTGTAATTTTCTAAATCAGGGGTATTTTGG
TAATTTTACAAATAG
Found at i:75423509 original size:27 final size:27
Alignment explanation
Indices: 75423469--75423668 Score: 222
Period size: 27 Copynumber: 7.4 Consensus size: 27
75423459 GTAATTTCAC
*
75423469 AATCAAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
75423496 AA-CTGATGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTATA
** * *
75423523 AATTAAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
75423550 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
75423577 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
75423604 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
75423631 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
75423658 AATTGAGGGTA
1 AATCGAGGGTA
75423669 TTTCAGTAAT
Statistics
Matches: 144, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:75423544 original size:54 final size:54
Alignment explanation
Indices: 75423473--75423652 Score: 245
Period size: 54 Copynumber: 3.3 Consensus size: 54
75423463 TTTCACAATC
* * * *
75423473 AAGGGTAAAACGGTAATTTTATAAA-CTGATGGTAAAATGGTAATTTTGTAAATT
1 AAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATAAATT
*
75423527 AAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATT
1 AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATT
* * * *
75423581 GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATC
1 AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATT
* *
75423635 GAGGGTAAAATGGTAATT
1 AAGGGTAAAACGGTAATT
75423653 CTACAAATTG
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
54 113 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (54 bp):
AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATT
Found at i:75423588 original size:81 final size:81
Alignment explanation
Indices: 75423469--75423668 Score: 283
Period size: 81 Copynumber: 2.5 Consensus size: 81
75423459 GTAATTTCAC
* * * * * * *
75423469 AATCAAGGGTAAAACGGTAATTTTATAAACTGATGGTAAAATGGTAATTTTGTAAATTAAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
* *
75423534 AAACGATAATTTTGTA
66 AAACGATAATTCTATA
* *
75423550 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
*
75423615 AAACGGTAATTCTATA
66 AAACGATAATTCTATA
*
75423631 AATCGAGGGTAAAATGGTAATTCTACAAATTGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTA
75423669 TTTCAGTAAT
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
AAACGATAATTCTATA
Found at i:75428512 original size:12 final size:12
Alignment explanation
Indices: 75428495--75428530 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
75428485 TAGGTTTCCC
75428495 AAAATGGAAATG
1 AAAATGGAAATG
*
75428507 AAAATGAAAATG
1 AAAATGGAAATG
75428519 AAAATGGAAATG
1 AAAATGGAAATG
75428531 GAATCTTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:75428533 original size:6 final size:6
Alignment explanation
Indices: 75428495--75428530 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
75428485 TAGGTTTCCC
* *
75428495 AAAATG GAAATG AAAATG AAAATG AAAATG GAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
75428531 GAATCTTGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:75433627 original size:20 final size:20
Alignment explanation
Indices: 75433586--75433632 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
75433576 CGGCAATGTT
*
75433586 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTAAGG
*
75433606 TATGTTGTGAAAGA-TCAAGG
1 TAAGTTGTGAAAGACT-AAGG
75433626 TAAGTTG
1 TAAGTTG
75433633 CAAGTTGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTAAGG
Found at i:75438586 original size:27 final size:26
Alignment explanation
Indices: 75438548--75438658 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
75438538 AAGAAGCGTC
*
75438548 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGTT
75438575 CTGGTGGCTATGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGTT
*
75438602 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGTT
* * *
75438629 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACATTATCTGTT
75438655 CTGG
1 CTGG
75438659 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
26 16 0.21
27 60 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGTT
Found at i:75438632 original size:54 final size:53
Alignment explanation
Indices: 75438548--75438658 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
75438538 AAGAAGCGTC
*
75438548 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTATGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACAT-TATCTGTT
* * * *
75438602 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACATTATCTGTT
75438655 CTGG
1 CTGG
75438659 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACATTATCTGTT
Found at i:75444984 original size:24 final size:24
Alignment explanation
Indices: 75444957--75445017 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
75444947 GTAAGGAGGG
*
75444957 GATAAGTGAGAAGATTTAGGAGCT
1 GATAAGGGAGAAGATTTAGGAGCT
75444981 GATAAGGGAGAAGATTTAGGAGCT
1 GATAAGGGAGAAGATTTAGGAGCT
75445005 GATAAGGGGAGAA
1 GATAA-GGGAGAA
75445018 AATAAAAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 28 0.80
25 7 0.20
ACGTcount: A:0.39, C:0.03, G:0.38, T:0.20
Consensus pattern (24 bp):
GATAAGGGAGAAGATTTAGGAGCT
Found at i:75446506 original size:27 final size:27
Alignment explanation
Indices: 75446468--75446578 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
75446458 AGGAAGCGTC
*
75446468 CTGGTGGCTATGCCACAATTCTCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
75446495 CTGGTGGCTATGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* **
75446522 CTGGTGGCTCTGCCACAATTATCTCTT
1 CTGGTGGCTATGCCACAATTATCTGAT
* * * *
75446549 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGAT
75446575 CTGG
1 CTGG
75446579 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.20
27 58 0.77
28 2 0.03
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:75446552 original size:54 final size:53
Alignment explanation
Indices: 75446468--75446578 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
75446458 AGGAAGCGTC
* * *
75446468 CTGGTGGCTATGCCACAATTCTCTGATCTGGTGGCTATGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTCATCTGGTGACTATGCCACAT-TATCTGTT
* * * *
75446522 CTGGTGGCTCTGCCACAATTATCTCTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTCATCTGGTGACTATGCCACATTATCTGTT
75446575 CTGG
1 CTGG
75446579 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTCATCTGGTGACTATGCCACATTATCTGTT
Found at i:75461771 original size:12 final size:12
Alignment explanation
Indices: 75461754--75461778 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75461744 TTTTAATAAG
75461754 ATTTAATATTAA
1 ATTTAATATTAA
75461766 ATTTAATATTAA
1 ATTTAATATTAA
75461778 A
1 A
75461779 GTGATTAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:75464897 original size:11 final size:11
Alignment explanation
Indices: 75464883--75464928 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
75464873 GTCCTCTCAC
75464883 AATTCTCTCTA
1 AATTCTCTCTA
*
75464894 AATTCTTTCTA
1 AATTCTCTCTA
*
75464905 AATTCCCTC-A
1 AATTCTCTCTA
*
75464915 AATT-TCTCTC
1 AATTCTCTCTA
75464925 AATT
1 AATT
75464929 TTTGTCAAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
9 3 0.10
10 9 0.31
11 17 0.59
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTCTCTCTA
Found at i:75464936 original size:21 final size:22
Alignment explanation
Indices: 75464912--75464955 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
75464902 CTAAATTCCC
75464912 TCAAA-TT-TCTCTCAATTTTTG
1 TCAAAGTTGTCTCT-AATTTTTG
75464933 TCAAAGTTGTCTCTAATTTTTG
1 TCAAAGTTGTCTCTAATTTTTG
75464955 T
1 T
75464956 AAAAAAGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 11 0.52
23 5 0.24
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.52
Consensus pattern (22 bp):
TCAAAGTTGTCTCTAATTTTTG
Found at i:75466114 original size:7 final size:7
Alignment explanation
Indices: 75466094--75466136 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
75466084 CATAATAAAA
75466094 TAGTCATT
1 TAGT-ATT
*
75466102 TCGTATT
1 TAGTATT
75466109 TAGTATT
1 TAGTATT
75466116 TAGTATT
1 TAGTATT
75466123 TAGTATT
1 TAGTATT
75466130 TAGTATT
1 TAGTATT
75466137 ACCTATATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
7 30 0.91
8 3 0.09
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:75467075 original size:21 final size:22
Alignment explanation
Indices: 75467029--75467079 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
75467019 CCAACACCCA
*
75467029 CAACCA-AATCCCCTGCCGAAG
1 CAACCACAATCCCCTACCGAAG
* *
75467050 GAACCACAATCCCC-ACCGGAG
1 CAACCACAATCCCCTACCGAAG
75467071 CAACCACAA
1 CAACCACAA
75467080 CCCTTGCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.37, C:0.43, G:0.14, T:0.06
Consensus pattern (22 bp):
CAACCACAATCCCCTACCGAAG
Found at i:75467429 original size:128 final size:127
Alignment explanation
Indices: 75467196--75467570 Score: 576
Period size: 128 Copynumber: 2.9 Consensus size: 127
75467186 GTAGAAACTT
* *
75467196 TTTTTATATAG-TTTCATATAATAAAATAAAAGTTAT-TTTTAATATTTTAATTGTACGTTACTT
1 TTTTTATATAGTTTTAAT-TAATAAAATAAAA-TT-TGTTTTAATATTTTAATTGTACTTTACTT
75467259 TTTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTT
63 TTTTTTAATTTTATT-AAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTT
75467324 A
127 A
*
75467325 CTTTTTATATAGTTTTAATTAATAAAATAAAATTTGTTTTAATATTTTAATTGTACTTTAC-CTT
1 -TTTTTATATAGTTTTAATTAATAAAATAAAATTTGTTTTAATATTTTAATTGTACTTTACTTTT
*
75467389 TTTTAATTTTATTGAAATAAATGTTCTTTTAAATTGGCCAATATTTTTATTATTTTTATATTTA
65 TTTTAATTTTATT-AAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
*
75467453 TTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTTTT
1 TTTTTATATAGTTTTAATTAATAAAATAAAATTTG-TTTTAATATTTTAATTGTACTTTACTTTT
* * *
75467518 TTTTCATTTTAATACAATACATGTTCTTTTAAATTAGCCAATATTTTTTATTA
65 TTTTAATTTTATTA-AATAAATGTTCTTTTAAATTAGCCAATA-TTTTTATTA
75467571 AAATAAATGT
Statistics
Matches: 228, Mismatches: 11, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
127 34 0.15
128 91 0.40
129 65 0.29
130 33 0.14
131 5 0.02
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.56
Consensus pattern (127 bp):
TTTTTATATAGTTTTAATTAATAAAATAAAATTTGTTTTAATATTTTAATTGTACTTTACTTTTT
TTTAATTTTATTAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
Found at i:75467581 original size:39 final size:39
Alignment explanation
Indices: 75467524--75467608 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 39
75467514 TTTTTTTTCA
* * *
75467524 TTTTAATACAATACATGTTCTTTTAAATTA-GCCAATATT
1 TTTTAATAAAATAAATGTTATTTTAAA-TACGCCAATATT
* * *
75467563 TTTTATTAAAATAAATGTTATTTTGAATACGGCAATA-T
1 TTTTAATAAAATAAATGTTATTTTAAATACGCCAATATT
75467601 TTTTAATA
1 TTTTAATA
75467609 TTTTTATATT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
38 10 0.26
39 28 0.74
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (39 bp):
TTTTAATAAAATAAATGTTATTTTAAATACGCCAATATT
Found at i:75467612 original size:8 final size:9
Alignment explanation
Indices: 75467596--75467625 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
75467586 TGAATACGGC
75467596 AATATTTTT
1 AATATTTTT
75467605 AATATTTTT
1 AATATTTTT
75467614 -ATATTTTT
1 AATATTTTT
75467622 AATA
1 AATA
75467626 AAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
AATATTTTT
Found at i:75470869 original size:126 final size:126
Alignment explanation
Indices: 75470644--75470951 Score: 483
Period size: 126 Copynumber: 2.5 Consensus size: 126
75470634 AGTCTAAGGC
* * *
75470644 TTTTTTAGATACTACTGTAGCAAAAGGGTGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTGAT
1 TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTCGTAATTTTGCTGAT
* *
75470709 AGTGCATCCTTCTTAAAGAGTTTTTGACACTATTTGTTCAAAAACATCTTTTCAAAATTAT
66 AGTGCATCCTTCTTAAAGAGTTTTTAACACTATTTGTTCAAAAACATCTTCTCAAAATTAT
*
75470770 TTTTTTAGATACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTTCGTAATTTTGCTGAT
1 TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTCGTAATTTTGCTGAT
* * * *
75470835 AGTGCATCCTTCTTGAAGCGTTTTTAACACTATTTGTTCAGAAACATCTTCTCATAATTAT
66 AGTGCATCCTTCTTAAAGAGTTTTTAACACTATTTGTTCAAAAACATCTTCTCAAAATTAT
* * * *
75470896 TTTTTCAAATACTACTGTAGTAAAAGAGCGTCCACATGGGAGC-TTTTTTCGTAATT
1 TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTCGTAATT
75470952 AACAGTTAAT
Statistics
Matches: 167, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
125 13 0.08
126 154 0.92
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (126 bp):
TTTTTTAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTCGTAATTTTGCTGAT
AGTGCATCCTTCTTAAAGAGTTTTTAACACTATTTGTTCAAAAACATCTTCTCAAAATTAT
Found at i:75471136 original size:15 final size:16
Alignment explanation
Indices: 75471116--75471148 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
75471106 TAAAACAATC
75471116 AAAAACCCT-AACCCT
1 AAAAACCCTGAACCCT
75471131 AAAAACCCTGAACCCT
1 AAAAACCCTGAACCCT
75471147 AA
1 AA
75471149 TTTAATTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.48, C:0.36, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAAACCCTGAACCCT
Found at i:75471251 original size:15 final size:15
Alignment explanation
Indices: 75471227--75471283 Score: 55
Period size: 16 Copynumber: 3.8 Consensus size: 15
75471217 TTCCCTTAAA
*
75471227 AAACACTAAAACCCT
1 AAACCCTAAAACCCT
* *
75471242 AAACCTTAAAAACCTT
1 AAACCCT-AAAACCCT
75471258 AAACCACT-AAACCCT
1 AAACC-CTAAAACCCT
75471273 -AACCCTAAAAC
1 AAACCCTAAAAC
75471284 AATCAAAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
13 2 0.06
14 8 0.24
15 11 0.32
16 12 0.35
17 1 0.03
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.16
Consensus pattern (15 bp):
AAACCCTAAAACCCT
Found at i:75471260 original size:24 final size:25
Alignment explanation
Indices: 75471220--75471270 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
75471210 TTAATTTTTC
75471220 CCTTAAAAAACACTAAAACC-CTAAA
1 CCTTAAAAAACACT-AAACCACTAAA
75471245 CCTT-AAAAAC-CTTAAACCACTAAA
1 CCTTAAAAAACAC-TAAACCACTAAA
75471269 CC
1 CC
75471271 CTAACCCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.25
24 14 0.58
25 4 0.17
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (25 bp):
CCTTAAAAAACACTAAACCACTAAA
Found at i:75471376 original size:173 final size:173
Alignment explanation
Indices: 75471078--75471481 Score: 661
Period size: 173 Copynumber: 2.3 Consensus size: 173
75471068 AAAAAACACC
* * *
75471078 AAAACCCTAAACCACTAAATCCTAACCCTAAAACAATCAAAAACCCTAACCCT-AAAAACCCTGA
1 AAAAACCTAAACCACTAAACCCTAACCCTAAAACAATCAAAAACCCTAACCCTAAAAAACCCTAA
** *
75471142 ACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAATTCTCAACTCTAATT
66 ACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTAAACTCTAATT
*
75471207 AAATTAA-TTTTTCCCTTAAAAAACACTAAAACCCTAAA-CCTT
131 AAATTAACTTTTTCCCTT-AAAAACACTAAAACCCTAAAGCCTA
**
75471249 AAAAACCTTAAACCACTAAACCCTAACCCTAAAACAATCAAAAACCCTAACCCTAAAAAACTTTA
1 AAAAACC-TAAACCACTAAACCCTAACCCTAAAACAATCAAAAACCCTAACCCTAAAAAACCCTA
75471314 AACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTAAACTCTAAT
65 AACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTAAACTCTAAT
75471379 TAAATTAACTTTTTCCCTTAAAAACACTAAAACCCTAAAGCCTA
130 TAAATTAACTTTTTCCCTTAAAAACACTAAAACCCTAAAGCCTA
** *
75471423 AAAAACCTAAACCACTAAACTTTAACCCTAAAATAATCAAAAACCCTAACCCTAAAAAA
1 AAAAACCTAAACCACTAAACCCTAACCCTAAAACAATCAAAAACCCTAACCCTAAAAAA
75471482 GGGGCAAAAC
Statistics
Matches: 217, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
171 6 0.03
172 45 0.21
173 146 0.67
174 20 0.09
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.29
Consensus pattern (173 bp):
AAAAACCTAAACCACTAAACCCTAACCCTAAAACAATCAAAAACCCTAACCCTAAAAAACCCTAA
ACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACCCTAAACTCTAATT
AAATTAACTTTTTCCCTTAAAAACACTAAAACCCTAAAGCCTA
Found at i:75474584 original size:22 final size:22
Alignment explanation
Indices: 75474559--75474614 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
75474549 CTCGTATGAG
* * *
75474559 CTTACTGTTTAGCTCGATAGAA
1 CTTACTGTTCAACTCAATAGAA
* *
75474581 CTTACCGATTCAACTCAATAGAG
1 CTTACTG-TTCAACTCAATAGAA
75474604 CTTACTGTTCA
1 CTTACTGTTCA
75474615 TCAGCTTAGG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (22 bp):
CTTACTGTTCAACTCAATAGAA
Found at i:75474586 original size:45 final size:45
Alignment explanation
Indices: 75474498--75474612 Score: 119
Period size: 45 Copynumber: 2.5 Consensus size: 45
75474488 TTACGATATA
* *
75474498 TCAACTCGTAAGAGCTTACTGTTTTTAGCACATTAGAGCTTACC-ATT
1 TCAACTCGTATGAGCTTACTG--TTTAGCACATTAGAACTTACCGA-T
* *
75474545 TCAGCTCGTATGAGCTTACTGTTTAGCTCGA-TAGAACTTACCGAT
1 TCAACTCGTATGAGCTTACTGTTTAGCAC-ATTAGAACTTACCGAT
*
75474590 TCAACTC-AATAGAGCTTACTGTT
1 TCAACTCGTAT-GAGCTTACTGTT
75474613 CATCAGCTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
44 2 0.03
45 36 0.61
46 2 0.03
47 19 0.32
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.35
Consensus pattern (45 bp):
TCAACTCGTATGAGCTTACTGTTTAGCACATTAGAACTTACCGAT
Found at i:75477219 original size:13 final size:13
Alignment explanation
Indices: 75477201--75477225 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75477191 GTAAGTGATT
75477201 TTGATGATTTTTC
1 TTGATGATTTTTC
75477214 TTGATGATTTTT
1 TTGATGATTTTT
75477226 TGCATTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:75478001 original size:47 final size:47
Alignment explanation
Indices: 75477933--75478240 Score: 280
Period size: 47 Copynumber: 6.6 Consensus size: 47
75477923 TTTGTGTGCT
* **
75477933 AGTGTAAGA-CATGTCTAGGACAT-GCATCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTCA-TATGAGAGCC
* * * * *
75477979 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTCATATGAGAGCC
* * *
75478027 AGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCCTCGAGATGTA-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTC-ATATG-AGAGCC
* * * * * * *
75478073 AGTGTACGA-CATATCTGGGACAT-GCATCGGCTACA-A-AATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTCATATGA-GAGCC
*
75478117 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATA-GATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTCATATGA-GAGCC
*
75478164 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATA-GATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTCATATGA-GAGCC
75478211 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
75478241 AGCATTATAC
Statistics
Matches: 221, Mismatches: 29, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.00
44 10 0.05
45 15 0.07
46 60 0.27
47 111 0.50
48 23 0.10
49 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTCATATGAGAGCC
Found at i:75478215 original size:138 final size:139
Alignment explanation
Indices: 75477978--75478240 Score: 358
Period size: 138 Copynumber: 1.9 Consensus size: 139
75477968 TTATGAGAGC
* *
75477978 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCT
* * *
75478043 GGGACATGCATCAGCCTCGAGATGTAAGCTAGTGTACGA-CATATCTGGGACAT-GCATCGGCTA
66 GGGACATGCATCAGACTCGAGATG-AAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCTA
75478106 CAAAATGTGT
130 CAAAATGTGT
*
75478116 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATA-GATGAGCCAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGA-GAGCCAGTGTAAGA-CATGT
* *
75478179 CTGGGACATGGCATC-GACTTGATAGATG-AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
64 CTGGGACAT-GCATCAGACTCG--AGATGAAGCCAGTGTAAGACCATATCTGGGACATGGCATC
75478241 AGCATTATAC
Statistics
Matches: 110, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
136 2 0.02
137 18 0.16
138 62 0.56
139 18 0.16
140 10 0.09
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (139 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCAGACTCGAGATGAAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCTAC
AAAATGTGT
Found at i:75478230 original size:94 final size:91
Alignment explanation
Indices: 75477933--75478240 Score: 313
Period size: 94 Copynumber: 3.3 Consensus size: 91
75477923 TTTGTGTGCT
* * *
75477933 AGTGTAAGACATGTCTAGGACATGCATCGACCACATTATGA-GAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGACTAGA-TA-GATGAGCCAGTGTAAGACCATGTCTG
*
75477997 GGACATGGCATCGGCATTGAGACGA-GAGCT
64 GGACATGGCATCGGC-TTGA-A-GATGAGCC
* * * * *
75478027 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGAT-G-TAAGCTAGTGTACGA-CATATCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GACT--AGATAGATGAGCCAGTGTAAGACCATGTCT
** * * *
75478089 GGGACAT-GCATCGGCTACAAAATGTGTC
63 GGGACATGGCATCGGCTTGAAGATGAGCC
*
75478117 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTAGATAGATGAGCCAGTGTAAGACCATGTCTG
*
75478182 GGACATGGCATCGACTTGATAGATGAGCC
64 GGACATGGCATCGGCTTGA-AGATGAGCC
75478211 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
75478241 AGCATTATAC
Statistics
Matches: 176, Mismatches: 26, Indels: 24
0.78 0.12 0.11
Matches are distributed among these distances:
89 4 0.02
90 13 0.07
91 31 0.18
92 26 0.15
93 22 0.12
94 75 0.43
95 2 0.01
96 1 0.01
97 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTAGATAGATGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCTTGAAGATGAGCC
Found at i:75488429 original size:47 final size:44
Alignment explanation
Indices: 75488313--75488438 Score: 128
Period size: 47 Copynumber: 2.7 Consensus size: 44
75488303 TTATTTGTGT
* * *
75488313 GCTAGTGTAAGACATGTCTGAGACATGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTACGAGA
* * *
75488359 GCCAGTGTAAAACCATGTATGGGACATGGCATCGG-CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT---ACGAGA
75488407 GCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG
75488439 ACTACAAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 10
0.78 0.11 0.12
Matches are distributed among these distances:
45 4 0.06
46 16 0.24
47 25 0.38
48 21 0.32
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTACGAGA
Found at i:75488520 original size:50 final size:48
Alignment explanation
Indices: 75488361--75488580 Score: 140
Period size: 47 Copynumber: 4.6 Consensus size: 48
75488351 TTATGAGAGC
* * * * *
75488361 CAGTGTAAAACCATGTATGGGACATGGCATCGGCATTGAGA-CGA-GAGCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-ATCG-GATAGATGAGGT
* *
75488410 -AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTAC--A-AAATG-TGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGA-T-CGGATAGATGAGGT
* *
75488453 CAATGTAAGACCATGTCTGGGACATGGGATCAGCA-CGGATATG-TGAGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-ATCGGATA-GATGAG-GT
** ** *
75488503 CAGTGTAAGACCATGTCTAAGACATGGCATCGATTTGATAGATGAGCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGATCGGATAGATGAGGT
*
75488551 -AGTGTAAGACCATGTCTGGGACATGACATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
75488581 AACATTATAC
Statistics
Matches: 134, Mismatches: 21, Indels: 34
0.71 0.11 0.18
Matches are distributed among these distances:
43 3 0.02
44 10 0.07
45 17 0.13
46 9 0.07
47 42 0.31
48 15 0.11
49 9 0.07
50 29 0.22
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGATCGGATAGATGAGGT
Found at i:75489323 original size:16 final size:16
Alignment explanation
Indices: 75489302--75489332 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
75489292 GCCGTGTGTG
75489302 ACACACGGCCAGCCCA
1 ACACACGGCCAGCCCA
75489318 ACACACGGCCAGCCC
1 ACACACGGCCAGCCC
75489333 CATGGGCGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.52, G:0.19, T:0.00
Consensus pattern (16 bp):
ACACACGGCCAGCCCA
Found at i:75496352 original size:21 final size:22
Alignment explanation
Indices: 75496328--75496374 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
75496318 GTCCCTGCAC
*
75496328 CACACGGACGTGTGCC-TCTGT
1 CACACGGACGTGTGCCACCTGT
* *
75496349 CACATGGCCGTGTGCCACCTGT
1 CACACGGACGTGTGCCACCTGT
75496371 CACA
1 CACA
75496375 TGGGCGTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.17, C:0.36, G:0.26, T:0.21
Consensus pattern (22 bp):
CACACGGACGTGTGCCACCTGT
Found at i:75496373 original size:22 final size:21
Alignment explanation
Indices: 75496336--75496377 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
75496326 ACCACACGGA
*
75496336 CGTGTGCCTCTGTCACATGGC
1 CGTGTGCCCCTGTCACATGGC
75496357 CGTGTGCCACCTGTCACATGG
1 CGTGTGCC-CCTGTCACATGG
75496378 GCGTTTCGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.12, C:0.33, G:0.29, T:0.26
Consensus pattern (21 bp):
CGTGTGCCCCTGTCACATGGC
Found at i:75500201 original size:26 final size:29
Alignment explanation
Indices: 75500172--75500235 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
75500162 AATCAATAAA
75500172 ATAATATT-ATA-ATATATAACTATTA-C
1 ATAATATTAATACATATATAACTATTATC
*
75500198 ATAAAATATTAATACATATATAACTATTATT
1 AT--AATATTAATACATATATAACTATTATC
75500229 ATAATAT
1 ATAATAT
75500236 AGATTGCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
26 2 0.06
28 6 0.19
29 8 0.25
30 14 0.44
31 2 0.06
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (29 bp):
ATAATATTAATACATATATAACTATTATC
Found at i:75500202 original size:31 final size:30
Alignment explanation
Indices: 75500150--75500226 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 30
75500140 TATAATAAAT
* * *
75500150 TAATATATTACTAAT-CAATAAAATAATATTA
1 TAATATATAACTATTACAATAAAAT-AT-TAA
75500181 TAATATATAACTATTAC-ATAAAATATTAA
1 TAATATATAACTATTACAATAAAATATTAA
75500210 TACATATATAACTATTA
1 TA-ATATATAACTATTA
75500227 TTATAATATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
29 4 0.10
30 16 0.39
31 20 0.49
32 1 0.02
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (30 bp):
TAATATATAACTATTACAATAAAATATTAA
Found at i:75500334 original size:16 final size:15
Alignment explanation
Indices: 75500291--75500339 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
75500281 ATCATCGATG
*
75500291 TATATATATAAATTA
1 TATATATATATATTA
*
75500306 TAAATATATTATATTA
1 TATATATA-TATATTA
*
75500322 TATATATCATATAATA
1 TATATAT-ATATATTA
75500338 TA
1 TA
75500340 ATAGGAGAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
15 7 0.25
16 20 0.71
17 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TATATATATATATTA
Found at i:75500676 original size:17 final size:17
Alignment explanation
Indices: 75500654--75500690 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
75500644 AGAATAAAAA
75500654 AATAATACATAATATAT
1 AATAATACATAATATAT
**
75500671 AATAATATGTAATATAT
1 AATAATACATAATATAT
75500688 AAT
1 AAT
75500691 GTATTACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (17 bp):
AATAATACATAATATAT
Found at i:75501902 original size:34 final size:34
Alignment explanation
Indices: 75501815--75501938 Score: 176
Period size: 34 Copynumber: 3.6 Consensus size: 34
75501805 TATTTATGGC
*
75501815 AGGTACATGCGAACTGTATATGTGTGCAAACCCT
1 AGGTACATGCGAACTGTATATGTGTGCGAACCCT
* * *
75501849 AGGTGACATGTGAATTGTATATGTGTGCGAACTCT
1 AGGT-ACATGCGAACTGTATATGTGTGCGAACCCT
* *
75501884 AGGTACATGTGAACTGTATATGTGTACGAACCCT
1 AGGTACATGCGAACTGTATATGTGTGCGAACCCT
*
75501918 AGGTATATGCGAACTGTATAT
1 AGGTACATGCGAACTGTATAT
75501939 ATATATGTGA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
34 50 0.62
35 30 0.38
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (34 bp):
AGGTACATGCGAACTGTATATGTGTGCGAACCCT
Found at i:75501951 original size:36 final size:34
Alignment explanation
Indices: 75501815--75501968 Score: 137
Period size: 34 Copynumber: 4.4 Consensus size: 34
75501805 TATTTATGGC
* * * * *
75501815 AGGTACATGCGAACTGTATATGTGTGCAAACCCT
1 AGGTACATGTGAACTGTATATATATACGAACCCT
* * * * *
75501849 AGGTGACATGTGAATTGTATATGTGTGCGAACTCT
1 AGGT-ACATGTGAACTGTATATATATACGAACCCT
* *
75501884 AGGTACATGTGAACTGTATATGTGTACGAACCCT
1 AGGTACATGTGAACTGTATATATATACGAACCCT
* * *
75501918 AGGTATATGCGAACTGTATATATATATGTGAACCCT
1 AGGTACATGTGAACTGTATATATATA--CGAACCCT
*
75501954 ATGTACATGTGAACT
1 AGGTACATGTGAACT
75501969 ATGCAAAACC
Statistics
Matches: 102, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
34 53 0.52
35 30 0.29
36 19 0.19
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (34 bp):
AGGTACATGTGAACTGTATATATATACGAACCCT
Found at i:75502287 original size:34 final size:34
Alignment explanation
Indices: 75502249--75502407 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 34
75502239 TATTTATGGC
*
75502249 AGGTACATGCAAACTGTATATGTATGCGAACCCT
1 AGGTACATGCAAACTGTATATGTGTGCGAACCCT
** * **
75502283 AGGTAACATGTGAATTGTATATGTGTATGAACCCT
1 AGGT-ACATGCAAACTGTATATGTGTGCGAACCCT
***
75502318 AGGTAACATGTGGACTGTATATGTGTGCGAACCCT
1 AGGT-ACATGCAAACTGTATATGTGTGCGAACCCT
*
75502353 AGGTATATGCAAACTGTATATGTGTGCGAACCCT
1 AGGTACATGCAAACTGTATATGTGTGCGAACCCT
* * * *
75502387 AGATATATGCTAACTATATAT
1 AGGTACATGCAAACTGTATAT
75502408 ATATATGTAA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
34 48 0.45
35 59 0.55
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (34 bp):
AGGTACATGCAAACTGTATATGTGTGCGAACCCT
Found at i:75502302 original size:35 final size:35
Alignment explanation
Indices: 75502260--75502388 Score: 179
Period size: 35 Copynumber: 3.7 Consensus size: 35
75502250 GGTACATGCA
*
75502260 AACTGTATATGTATGCGAACCCTAGGTAACATGTG
1 AACTGTATATGTGTGCGAACCCTAGGTAACATGTG
* **
75502295 AATTGTATATGTGTATGAACCCTAGGTAACATGTG
1 AACTGTATATGTGTGCGAACCCTAGGTAACATGTG
* * **
75502330 GACTGTATATGTGTGCGAACCCTAGGT-ATATGCA
1 AACTGTATATGTGTGCGAACCCTAGGTAACATGTG
75502364 AACTGTATATGTGTGCGAACCCTAG
1 AACTGTATATGTGTGCGAACCCTAG
75502389 ATATATGCTA
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
34 28 0.34
35 54 0.66
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (35 bp):
AACTGTATATGTGTGCGAACCCTAGGTAACATGTG
Found at i:75503873 original size:55 final size:55
Alignment explanation
Indices: 75503806--75503916 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
75503796 ATATATATAA
*
75503806 ATTGTTAATATATTTTATACTATATGATATGATATAACATTATAGTAGAAGAGTT
1 ATTGTTAATATATTATATACTATATGATATGATATAACATTATAGTAGAAGAGTT
* *
75503861 ATTGTTAATATATTATATATTATATGATATGATATAACATTATAGTAGAAGGGTT
1 ATTGTTAATATATTATATACTATATGATATGATATAACATTATAGTAGAAGAGTT
75503916 A
1 A
75503917 ACTTCCAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.43
Consensus pattern (55 bp):
ATTGTTAATATATTATATACTATATGATATGATATAACATTATAGTAGAAGAGTT
Found at i:75504197 original size:8 final size:8
Alignment explanation
Indices: 75504179--75504208 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
75504169 AAATATATAA
75504179 AATATTATT
1 AATA-TATT
75504188 AATATATT
1 AATATATT
75504196 AATATATT
1 AATATATT
75504204 AATAT
1 AATAT
75504209 TTTTTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
AATATATT
Found at i:75510401 original size:32 final size:32
Alignment explanation
Indices: 75510365--75510430 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
75510355 AAATATTAAT
75510365 TTATTGGGAAAAAGAAAAAGAAAAAATAGAAG
1 TTATTGGGAAAAAGAAAAAGAAAAAATAGAAG
75510397 TTATTGGGAAAAAGAAAAAGAAAAAATAGAAG
1 TTATTGGGAAAAAGAAAAAGAAAAAATAGAAG
75510429 TT
1 TT
75510431 GGAAAATTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.61, C:0.00, G:0.21, T:0.18
Consensus pattern (32 bp):
TTATTGGGAAAAAGAAAAAGAAAAAATAGAAG
Found at i:75513665 original size:17 final size:17
Alignment explanation
Indices: 75513643--75513678 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
75513633 AGTTGAATAA
75513643 TTCAATAAAGTAAGATT
1 TTCAATAAAGTAAGATT
75513660 TTCAATAAAGTAAGATT
1 TTCAATAAAGTAAGATT
75513677 TT
1 TT
75513679 AAAAGACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (17 bp):
TTCAATAAAGTAAGATT
Found at i:75516963 original size:8 final size:8
Alignment explanation
Indices: 75516929--75516995 Score: 55
Period size: 8 Copynumber: 8.1 Consensus size: 8
75516919 TCTCTTTTTC
75516929 TTTTATTT
1 TTTTATTT
**
75516937 TCATATTT
1 TTTTATTT
*
75516945 CTTTTGTTTT
1 -TTTT-ATTT
75516955 TTTTATTT
1 TTTTATTT
*
75516963 TCTTATTT
1 TTTTATTT
75516971 CTTTT-TTT
1 -TTTTATTT
*
75516979 TTTTACTT
1 TTTTATTT
75516987 TTTTATTT
1 TTTTATTT
75516995 T
1 T
75516996 GTTCCTTAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
7 4 0.09
8 29 0.64
9 9 0.20
10 3 0.07
ACGTcount: A:0.10, C:0.07, G:0.01, T:0.81
Consensus pattern (8 bp):
TTTTATTT
Found at i:75516964 original size:26 final size:25
Alignment explanation
Indices: 75516918--75516982 Score: 94
Period size: 26 Copynumber: 2.6 Consensus size: 25
75516908 GCCTCACACG
* *
75516918 TTCTCTTTTTCTTTTATTTTCATAT
1 TTCTTTTTTTTTTTTATTTTCATAT
*
75516943 TTCTTTTGTTTTTTTTATTTTCTTAT
1 TTCTTTT-TTTTTTTTATTTTCATAT
75516969 TTCTTTTTTTTTTT
1 TTCTTTTTTTTTTT
75516983 ACTTTTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 13 0.36
26 23 0.64
ACGTcount: A:0.08, C:0.11, G:0.02, T:0.80
Consensus pattern (25 bp):
TTCTTTTTTTTTTTTATTTTCATAT
Found at i:75517052 original size:24 final size:24
Alignment explanation
Indices: 75517015--75517075 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
75517005 TAAATTGTCT
* * *
75517015 TTTTATTTTTTTTCCTTTT-TTGA
1 TTTTGTTTTATTTCATTTTGTTGA
* *
75517038 TTTTTTTCTTATTTCATTTTGTTTA
1 TTTTGTT-TTATTTCATTTTGTTGA
75517063 TTTTGTTTTATTT
1 TTTTGTTTTATTT
75517076 TTTATTATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 6 0.19
24 16 0.52
25 9 0.29
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.79
Consensus pattern (24 bp):
TTTTGTTTTATTTCATTTTGTTGA
Found at i:75517139 original size:23 final size:22
Alignment explanation
Indices: 75517074--75517167 Score: 59
Period size: 22 Copynumber: 4.2 Consensus size: 22
75517064 TTTGTTTTAT
* **
75517074 TTTTTATTATTAACTTTAAAAA
1 TTTTTATAATTATTTTTAAAAA
* * *
75517096 -ATTTGTAATGTATATTT-AAAA
1 TTTTTATAAT-TATTTTTAAAAA
75517117 TGTTTTATAA-TATTTTTTAAAAA
1 T-TTTTATAATTA-TTTTTAAAAA
* *
75517140 TTTTAATTATTATTTTTAAAAA
1 TTTTTATAATTATTTTTAAAAA
75517162 TATTTT
1 T-TTTT
75517168 TTTAACTTTA
Statistics
Matches: 54, Mismatches: 11, Indels: 13
0.69 0.14 0.17
Matches are distributed among these distances:
21 12 0.22
22 26 0.48
23 16 0.30
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56
Consensus pattern (22 bp):
TTTTTATAATTATTTTTAAAAA
Found at i:75517291 original size:13 final size:13
Alignment explanation
Indices: 75517273--75517297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75517263 TTAAATAAAC
75517273 AAAATAATATAAG
1 AAAATAATATAAG
75517286 AAAATAATATAA
1 AAAATAATATAA
75517298 AACTTAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAATAATATAAG
Found at i:75517326 original size:19 final size:20
Alignment explanation
Indices: 75517302--75517357 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
75517292 ATATAAAACT
75517302 TAAAAAAGAAAAAAAATTAA
1 TAAAAAAGAAAAAAAATTAA
* * *
75517322 -GAAAAAG-ACAAAATTTAA
1 TAAAAAAGAAAAAAAATTAA
75517340 TAAAAAAGTAAAAAAAAT
1 TAAAAAAG-AAAAAAAAT
75517358 AAGGGTGGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
18 9 0.33
19 12 0.44
21 6 0.22
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (20 bp):
TAAAAAAGAAAAAAAATTAA
Found at i:75517433 original size:20 final size:21
Alignment explanation
Indices: 75517401--75517440 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
75517391 TGACTCCACC
75517401 AAAAAAAAGTTAAA-AAATTT
1 AAAAAAAAGTTAAAGAAATTT
75517421 AAAAAGAAA-TTAAAGAAATT
1 AAAAA-AAAGTTAAAGAAATT
75517441 GTATTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (21 bp):
AAAAAAAAGTTAAAGAAATTT
Found at i:75517511 original size:14 final size:14
Alignment explanation
Indices: 75517492--75517518 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75517482 AAAAATATGG
75517492 TTAATATTTAAAAA
1 TTAATATTTAAAAA
75517506 TTAATATTTAAAA
1 TTAATATTTAAAA
75517519 TTTTCAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATATTTAAAAA
Found at i:75517674 original size:18 final size:18
Alignment explanation
Indices: 75517651--75517704 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
75517641 ACAAATTTTT
*
75517651 TTAAATTAATAATATAAA
1 TTAAATAAATAATATAAA
* *
75517669 TTAAATAAACAAAATAAA
1 TTAAATAAATAATATAAA
* *
75517687 ATAAAAAAATAATATAAA
1 TTAAATAAATAATATAAA
75517705 ACTTAAAAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (18 bp):
TTAAATAAATAATATAAA
Found at i:75517683 original size:14 final size:13
Alignment explanation
Indices: 75517666--75517705 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
75517656 TTAATAATAT
*
75517666 AAATTAAATAAACA
1 AAATAAAATAAA-A
75517680 AAATAAAATAAAA
1 AAATAAAATAAAA
*
75517693 AAATAATATAAAA
1 AAATAAAATAAAA
75517706 CTTAAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAAATAAAA
Found at i:75517724 original size:36 final size:38
Alignment explanation
Indices: 75517658--75517733 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 38
75517648 TTTTTAAATT
75517658 AATAATATAAATTAAATAAACAAAATAAAA-TAA-AAA
1 AATAATATAAATTAAATAAACAAAATAAAATTAAGAAA
*
75517694 AATAATATAAAACTTAAA-AAAGAAAA-AAAATTAAGAAA
1 AATAATAT-AAA-TTAAATAAACAAAATAAAATTAAGAAA
75517732 AA
1 AA
75517734 GACAAAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 12 0.34
37 13 0.37
38 10 0.29
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (38 bp):
AATAATATAAATTAAATAAACAAAATAAAATTAAGAAA
Found at i:75517868 original size:20 final size:19
Alignment explanation
Indices: 75517837--75517883 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
75517827 CCAACTTTTT
75517837 AAAAATTTAAAA-AAAGTTA
1 AAAAATTTAAAAGAAA-TTA
75517856 AAAAATTTAAAAAGAAATTA
1 AAAAATTT-AAAAGAAATTA
75517876 AAGAAATT
1 AA-AAATT
75517884 GTATTTACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
20 9 0.36
21 8 0.32
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (19 bp):
AAAAATTTAAAAGAAATTA
Found at i:75517954 original size:14 final size:14
Alignment explanation
Indices: 75517935--75517961 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75517925 AAAAATATGG
75517935 TTAATATTTAAAAA
1 TTAATATTTAAAAA
75517949 TTAATATTTAAAA
1 TTAATATTTAAAA
75517962 TTTTCAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATATTTAAAAA
Found at i:75518087 original size:21 final size:23
Alignment explanation
Indices: 75518040--75518097 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
75518030 TAAAGTTAAA
75518040 AAAACATTTTTAAAAATAATAATT
1 AAAACA-TTTTAAAAATAATAATT
*
75518064 -AAA-ATTTTAAAAA-AATATTAT
1 AAAACATTTTAAAAATAATAAT-T
75518085 AAAACATTTTAAA
1 AAAACATTTTAAA
75518098 TATACATTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 5 0.17
21 10 0.33
22 4 0.13
23 11 0.37
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.36
Consensus pattern (23 bp):
AAAACATTTTAAAAATAATAATT
Found at i:75518106 original size:23 final size:22
Alignment explanation
Indices: 75518040--75518106 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
75518030 TAAAGTTAAA
*
75518040 AAAACATTTTTAAAAATAATAAT
1 AAAACA-TTTTAAAAATAATTAT
* *
75518063 TAAA-ATTTTAAAAAAATATTAT
1 AAAACATTTTAAAAATA-ATTAT
*
75518085 AAAACATTTTAAATATACATTA
1 AAAACATTTTAAAAATA-ATTA
75518107 CAAATTTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 10 0.29
22 8 0.23
23 17 0.49
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAACATTTTAAAAATAATTAT
Found at i:75518175 original size:17 final size:17
Alignment explanation
Indices: 75518129--75518185 Score: 62
Period size: 18 Copynumber: 3.3 Consensus size: 17
75518119 AGTTAATAAT
* *
75518129 AAAAAATAAAACAAAATG
1 AAAAAAGAAAA-AAAATC
*
75518147 AAATAAGAAAAAAAATC
1 AAAAAAGAAAAAAAATC
75518164 AAAAAAGGAAAAAAAAT-
1 AAAAAA-GAAAAAAAATC
75518181 AAAAA
1 AAAAA
75518186 GACAATTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
17 15 0.44
18 19 0.56
ACGTcount: A:0.81, C:0.04, G:0.07, T:0.09
Consensus pattern (17 bp):
AAAAAAGAAAAAAAATC
Found at i:75518225 original size:16 final size:16
Alignment explanation
Indices: 75518204--75518274 Score: 62
Period size: 16 Copynumber: 4.6 Consensus size: 16
75518194 ATTAAGGAAC
75518204 AAAATAA-AAAAGTAAA
1 AAAATAAGAAAA-TAAA
75518220 AAAATAAGAAAATAAA
1 AAAATAAGAAAATAAA
*
75518236 AGAAA-AA-AACA-AAA
1 A-AAATAAGAAAATAAA
* *
75518250 GAAATATGAAAATAAA
1 AAAATAAGAAAATAAA
75518266 AAAA-AAGAA
1 AAAATAAGAA
75518275 CGTGTCAGGC
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
13 3 0.07
14 4 0.09
15 10 0.23
16 20 0.45
17 7 0.16
ACGTcount: A:0.80, C:0.01, G:0.08, T:0.10
Consensus pattern (16 bp):
AAAATAAGAAAATAAA
Found at i:75518242 original size:22 final size:24
Alignment explanation
Indices: 75518211--75518271 Score: 72
Period size: 22 Copynumber: 2.6 Consensus size: 24
75518201 AACAAAATAA
* *
75518211 AAAAGTAAAAAAATAAGAAA-AT-
1 AAAAGAAAAAAAAAAAGAAATATG
75518233 AAAAGAAAAAAACAAAAGAAATATG
1 AAAAGAAAAAAA-AAAAGAAATATG
*
75518258 AAAATAAAAAAAAA
1 AAAAGAAAAAAAAA
75518272 GAACGTGTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 11 0.33
23 7 0.21
24 4 0.12
25 11 0.33
ACGTcount: A:0.80, C:0.02, G:0.08, T:0.10
Consensus pattern (24 bp):
AAAAGAAAAAAAAAAAGAAATATG
Found at i:75518269 original size:8 final size:8
Alignment explanation
Indices: 75518204--75518269 Score: 55
Period size: 8 Copynumber: 8.5 Consensus size: 8
75518194 ATTAAGGAAC
75518204 AAAATAAA
1 AAAATAAA
*
75518212 AAAGTAAA
1 AAAATAAA
*
75518220 AAAATAAG
1 AAAATAAA
75518228 AAAATAAA
1 AAAATAAA
*
75518236 AGAA-AAA
1 AAAATAAA
*
75518243 AACA-AAA
1 AAAATAAA
* **
75518250 GAAATATG
1 AAAATAAA
75518258 AAAATAAA
1 AAAATAAA
75518266 AAAA
1 AAAA
75518270 AAGAACGTGT
Statistics
Matches: 43, Mismatches: 14, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
7 10 0.23
8 33 0.77
ACGTcount: A:0.80, C:0.02, G:0.08, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:75518272 original size:22 final size:21
Alignment explanation
Indices: 75518204--75518274 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 21
75518194 ATTAAGGAAC
75518204 AAAATAAAAAAGTAAAAAAATAAG
1 AAAAT-AAAAA-TAAAAAAA-AAG
*
75518228 AAAATAAAAGAAAAAAACAAAAG
1 AAAATAAAA-ATAAAAA-AAAAG
*
75518251 AAATATGAAAATAAAAAAAAAG
1 AAA-ATAAAAATAAAAAAAAAG
75518273 AA
1 AA
75518275 CGTGTCAGGC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
22 7 0.17
23 21 0.51
24 13 0.32
ACGTcount: A:0.80, C:0.01, G:0.08, T:0.10
Consensus pattern (21 bp):
AAAATAAAAATAAAAAAAAAG
Found at i:75518634 original size:42 final size:44
Alignment explanation
Indices: 75518587--75518679 Score: 163
Period size: 44 Copynumber: 2.2 Consensus size: 44
75518577 TAAAAAAGCC
75518587 AATAAAATTA-CA-ATATAAATTTATCTTTTTCATTTTTTATCA
1 AATAAAATTATCATATATAAATTTATCTTTTTCATTTTTTATCA
*
75518629 AATAAAATTATTATATATAAATTTATCTTTTTCATTTTTTATCA
1 AATAAAATTATCATATATAAATTTATCTTTTTCATTTTTTATCA
75518673 AATAAAA
1 AATAAAA
75518680 ATTCATTAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 10 0.21
43 1 0.02
44 37 0.77
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (44 bp):
AATAAAATTATCATATATAAATTTATCTTTTTCATTTTTTATCA
Found at i:75521895 original size:22 final size:24
Alignment explanation
Indices: 75521868--75521913 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
75521858 GATGTGAATG
75521868 AAAAAATTG-TATAAAAAT-ATAA
1 AAAAAATTGATATAAAAATCATAA
*
75521890 AAAAAATTGATATCAAAATCATAA
1 AAAAAATTGATATAAAAATCATAA
75521914 TAGATGTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.43
23 8 0.38
24 4 0.19
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (24 bp):
AAAAAATTGATATAAAAATCATAA
Found at i:75525276 original size:37 final size:37
Alignment explanation
Indices: 75525226--75525302 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
75525216 GTCACATTAT
75525226 GACTTCCTTCTGCTTAGGTCCATTCTTGATATTTTTA
1 GACTTCCTTCTGCTTAGGTCCATTCTTGATATTTTTA
75525263 GACTTCCTTCTGCTTAGGTCCATTCTTGATATTTTTA
1 GACTTCCTTCTGCTTAGGTCCATTCTTGATATTTTTA
75525300 GAC
1 GAC
75525303 CTTGTGTGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.17, C:0.22, G:0.14, T:0.47
Consensus pattern (37 bp):
GACTTCCTTCTGCTTAGGTCCATTCTTGATATTTTTA
Found at i:75525393 original size:13 final size:13
Alignment explanation
Indices: 75525375--75525406 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
75525365 AAATTATACT
75525375 AGTAATTTTATTA
1 AGTAATTTTATTA
75525388 AGTAATTTTATTA
1 AGTAATTTTATTA
*
75525401 AATAAT
1 AGTAAT
75525407 ACATTAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (13 bp):
AGTAATTTTATTA
Found at i:75526225 original size:6 final size:6
Alignment explanation
Indices: 75526207--75526247 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
75526197 TAATATTGGA
* * *
75526207 GGAGAT GGGGAT GGAGAT GGAGAT GGGGAT GAAGAT GGAGA
1 GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGAT GGAGA
75526248 GGAAAGCTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.54, T:0.15
Consensus pattern (6 bp):
GGAGAT
Found at i:75526230 original size:18 final size:18
Alignment explanation
Indices: 75526207--75526247 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
75526197 TAATATTGGA
*
75526207 GGAGATGGGGATGGAGAT
1 GGAGATGGGGATGAAGAT
75526225 GGAGATGGGGATGAAGAT
1 GGAGATGGGGATGAAGAT
75526243 GGAGA
1 GGAGA
75526248 GGAAAGCTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.54, T:0.15
Consensus pattern (18 bp):
GGAGATGGGGATGAAGAT
Found at i:75527226 original size:18 final size:19
Alignment explanation
Indices: 75527198--75527242 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
75527188 TATCAAATAA
*
75527198 ATTTATTAAATATAAATTC
1 ATTTATTAAATAAAAATTC
75527217 ATTT-TTAAATAAAAATT-
1 ATTTATTAAATAAAAATTC
75527234 ATTATATTA
1 ATT-TATTA
75527243 TAACACTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 3 0.13
18 13 0.57
19 7 0.30
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTATTAAATAAAAATTC
Found at i:75535479 original size:9 final size:9
Alignment explanation
Indices: 75535465--75535498 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
75535455 GGGTGTTTTA
75535465 TTTTTTCTC
1 TTTTTTCTC
*
75535474 TTTTTTCTT
1 TTTTTTCTC
75535483 TTTTTTCTC
1 TTTTTTCTC
75535492 TTTTTTC
1 TTTTTTC
75535499 CCTTGTGGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTCTC
Found at i:75542945 original size:40 final size:41
Alignment explanation
Indices: 75542898--75543036 Score: 125
Period size: 49 Copynumber: 3.0 Consensus size: 41
75542888 ATATTTGAAT
75542898 AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
75542939 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 ------A--AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
*
75542988 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCC
1 ------A--AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
75543037 GATGTGATGA
Statistics
Matches: 89, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
47 1 0.01
49 88 0.99
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.28
Consensus pattern (41 bp):
AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
Found at i:75542955 original size:49 final size:49
Alignment explanation
Indices: 75542899--75543213 Score: 466
Period size: 47 Copynumber: 6.6 Consensus size: 49
75542889 TATTTGAATA
75542899 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
75542948 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
75542997 AATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
75543046 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
75543093 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
75543140 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
75543187 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
75543214 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 138 0.55
48 1 0.00
49 110 0.44
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:75545497 original size:40 final size:40
Alignment explanation
Indices: 75545436--75545796 Score: 537
Period size: 40 Copynumber: 9.1 Consensus size: 40
75545426 AGGTCTCGAC
75545436 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75545475 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
75545515 GATGTATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75545555 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75545595 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75545635 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
75545675 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
75545715 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCATGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
75545755 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
75545795 GA
1 GA
75545797 CGTGTATTCG
Statistics
Matches: 291, Mismatches: 28, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
39 5 0.02
40 284 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:75549104 original size:40 final size:41
Alignment explanation
Indices: 75549057--75549195 Score: 125
Period size: 49 Copynumber: 3.0 Consensus size: 41
75549047 ATATTTGAAT
75549057 AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
75549098 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 ------A--AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
*
75549147 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCC
1 ------A--AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
75549196 GATGTGATGA
Statistics
Matches: 89, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
47 1 0.01
49 88 0.99
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.28
Consensus pattern (41 bp):
AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
Found at i:75549114 original size:49 final size:49
Alignment explanation
Indices: 75549058--75549372 Score: 466
Period size: 47 Copynumber: 6.6 Consensus size: 49
75549048 TATTTGAATA
75549058 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
75549107 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
75549156 AATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
75549205 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
75549252 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
75549299 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
75549346 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
75549373 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 138 0.55
48 1 0.00
49 110 0.44
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:75551655 original size:40 final size:40
Alignment explanation
Indices: 75551594--75551954 Score: 537
Period size: 40 Copynumber: 9.1 Consensus size: 40
75551584 AGGTCTCGAC
75551594 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75551633 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
75551673 GATGTATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75551713 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75551753 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75551793 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
75551833 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
75551873 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCATGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
75551913 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
75551953 GA
1 GA
75551955 CGTGTATTCG
Statistics
Matches: 291, Mismatches: 28, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
39 5 0.02
40 284 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:75555261 original size:40 final size:41
Alignment explanation
Indices: 75555214--75555352 Score: 125
Period size: 49 Copynumber: 3.0 Consensus size: 41
75555204 ATATTTGAAT
75555214 AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
75555255 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 ------A--AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
*
75555304 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCC
1 ------A--AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
75555353 GATGTGATGA
Statistics
Matches: 89, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
47 1 0.01
49 88 0.99
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.28
Consensus pattern (41 bp):
AAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
Found at i:75555271 original size:49 final size:49
Alignment explanation
Indices: 75555215--75555529 Score: 466
Period size: 47 Copynumber: 6.6 Consensus size: 49
75555205 TATTTGAATA
75555215 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
75555264 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
75555313 AATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
75555362 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
75555409 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
75555456 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
75555503 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
75555530 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 138 0.55
48 1 0.00
49 110 0.44
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:75557773 original size:40 final size:40
Alignment explanation
Indices: 75557712--75558072 Score: 537
Period size: 40 Copynumber: 9.1 Consensus size: 40
75557702 AGGTCTCGAC
75557712 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75557751 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
75557791 GATGTATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75557831 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75557871 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75557911 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
75557951 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
75557991 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCATGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
75558031 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
75558071 GA
1 GA
75558073 CGTGTATTCG
Statistics
Matches: 291, Mismatches: 28, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
39 5 0.02
40 284 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:75570181 original size:46 final size:46
Alignment explanation
Indices: 75570113--75570237 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
75570103 TAGGCATCCG
* *
75570113 AACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGCCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
**
75570159 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
* *
75570205 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75570238 GCGGGTTACA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
Done.