Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 230 of 356
Found at i:75571972 original size:27 final size:27
Alignment explanation
Indices: 75571931--75572030 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
75571921 CCCTAATTGA
* * * * *
75571931 TAAAATGAATGTTTTTCCTTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
75571958 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
** * *
75571985 TAAAATGACTGA-AATGCCCCTACATGG
1 TAAAATGACT-ATTTTGCCCTTATATGG
* *
75572012 TAAATTGACTGTTTTGCCC
1 TAAAATGACTATTTTGCCC
75572031 CTATGTGATA
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATATGG
Found at i:75572031 original size:27 final size:27
Alignment explanation
Indices: 75571955--75572033 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
75571945 TTCCTTTATG
* * *
75571955 TGGTAAAATGACTATTTTGCCCTTATA
1 TGGTAAAATGACTGTTTTGCCCCTACA
***
75571982 TGGTAAAATGACTGAAATGCCCCTACA
1 TGGTAAAATGACTGTTTTGCCCCTACA
*
75572009 TGGTAAATTGACTGTTTTGCCCCTA
1 TGGTAAAATGACTGTTTTGCCCCTA
75572034 TGTGATATAT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (27 bp):
TGGTAAAATGACTGTTTTGCCCCTACA
Found at i:75572087 original size:32 final size:32
Alignment explanation
Indices: 75572049--75572112 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
75572039 TATATGTTTA
75572049 TATTTTAGCATGCTATCGTAACTGTGTTGATT
1 TATTTTAGCATGCTATCGTAACTGTGTTGATT
75572081 TATTTTAGCATGCTATCGTAACTGTGTTGATT
1 TATTTTAGCATGCTATCGTAACTGTGTTGATT
75572113 ACATGTATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.47
Consensus pattern (32 bp):
TATTTTAGCATGCTATCGTAACTGTGTTGATT
Found at i:75575675 original size:34 final size:34
Alignment explanation
Indices: 75575628--75575722 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 34
75575618 GTAACAGTTA
* * * * *
75575628 GGGCCTTAACCCATTTCAATAATAGTAGTAGTCT
1 GGGCCTGAGCCCATTACAATAACAGTAGTAATCT
* *
75575662 GGGCCTGAGCCCATTACAGTAACAGTAGTAATTT
1 GGGCCTGAGCCCATTACAATAACAGTAGTAATCT
* *
75575696 GGGCTTGAGCCCATTACAGTAACAGTA
1 GGGCCTGAGCCCATTACAATAACAGTA
75575723 TGCAAACAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (34 bp):
GGGCCTGAGCCCATTACAATAACAGTAGTAATCT
Found at i:75579372 original size:27 final size:27
Alignment explanation
Indices: 75579333--75579517 Score: 210
Period size: 27 Copynumber: 6.9 Consensus size: 27
75579323 CAATTTGATG
* * *
75579333 AAATGACTATTTTGCCCTTATATGGTG
1 AAATGACTGTTTTGCCCTTATGTGGTA
*
75579360 AAATGACTGTTTTGCCCCTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * *
75579387 AAATGATTATTTTGCCCCTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
75579414 AAATGACTGTTTTGCCCTAATTTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
75579441 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
*** * **
75579468 AAATGACTGAAATGCCTTTACATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
75579495 AATTCACTGTTTTGCCC-TATGTG
1 AAATGACTGTTTTGCCCTTATGTG
75579518 AGGTATTTAT
Statistics
Matches: 131, Mismatches: 27, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
26 4 0.03
27 127 0.97
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGTGGTA
Found at i:75581757 original size:40 final size:40
Alignment explanation
Indices: 75581702--75581890 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
75581692 ATGATAACCA
* *
75581702 GGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
75581742 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
75581782 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
75581822 GGCTAAGTCCCGAAGGCATTGGTGCGAATTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
* * * * *
75581862 GGCTATGCCCCAAAGGCATTCGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT
75581891 AGCTATATCC
Statistics
Matches: 133, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 131 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:75585815 original size:16 final size:17
Alignment explanation
Indices: 75585794--75585825 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
75585784 TCCGTCTGAA
75585794 ATACATGA-AAATGATG
1 ATACATGACAAATGATG
75585810 ATACATGACAAATGAT
1 ATACATGACAAATGAT
75585826 ATATGAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.25
Consensus pattern (17 bp):
ATACATGACAAATGATG
Found at i:75586898 original size:42 final size:42
Alignment explanation
Indices: 75586851--75586931 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
75586841 TAGAATTGAG
*
75586851 CACATGGGC-AGAGACACGGGCATGTGTCTTAGCCATGTGTAC
1 CACATGGCCTAGA-ACACGGGCATGTGTCTTAGCCATGTGTAC
* * *
75586893 CACATGGCCTAGAACACGGGCGTGTGTCTTGGCCGTGTG
1 CACATGGCCTAGAACACGGGCATGTGTCTTAGCCATGTG
75586932 AAACCTGTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 31 0.91
43 3 0.09
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.22
Consensus pattern (42 bp):
CACATGGCCTAGAACACGGGCATGTGTCTTAGCCATGTGTAC
Found at i:75593339 original size:79 final size:81
Alignment explanation
Indices: 75593237--75593421 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
75593227 GCTCCTCGTT
* *
75593237 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAAAGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAAAGCCTTC-GGATCTTAACCC
*
75593300 GGAT-TTAATAAC-TCGCA
64 GGATATT-ATAACTTAGCA
* * **
75593317 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAAGCCTTCGGATCTTAACCCGG
* *
75593381 ATATTGTCACTTAGCA
66 ATATTATAACTTAGCA
75593397 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75593422 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 52 0.57
80 36 0.40
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAAGCCTTCGGATCTTAACCCGG
ATATTATAACTTAGCA
Found at i:75593421 original size:40 final size:41
Alignment explanation
Indices: 75593237--75593421 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
75593227 GCTCCTCGTT
* *
75593237 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
75593277 CAAAAGCCTTCGGGACTTAACCCGGAT-TTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
75593317 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
75593356 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
75593397 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75593422 CATCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.61
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:75595917 original size:22 final size:22
Alignment explanation
Indices: 75595885--75595967 Score: 96
Period size: 22 Copynumber: 3.7 Consensus size: 22
75595875 TTTGAGCTGA
*
75595885 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTAATGAGC
**
75595907 TGGGCAGTAAGCTCTAATGAGC
1 TGAACAGTAAGCTCTAATGAGC
75595929 TGAACAGTAAGCTC-ACATGAGC
1 TGAACAGTAAGCTCTA-ATGAGC
*
75595951 TAAGAACAATAAGCTCT
1 T--GAACAGTAAGCTCT
75595968 TACGAGCTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
21 1 0.02
22 38 0.75
24 12 0.24
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAATGAGC
Found at i:75599895 original size:24 final size:24
Alignment explanation
Indices: 75599842--75599895 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
75599832 GTCATTTAAT
* *
75599842 AATCAACCATTTCAATACCAAAAT
1 AATCAACCATATCAATACCAAAAC
**
75599866 TCTCAACCATAATC-ATACCAAAAC
1 AATCAACCAT-ATCAATACCAAAAC
75599890 AATCAA
1 AATCAA
75599896 ACTTACATAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (24 bp):
AATCAACCATATCAATACCAAAAC
Found at i:75600917 original size:24 final size:24
Alignment explanation
Indices: 75600885--75600933 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
75600875 ACAAATTAAG
75600885 AAAGCTTAGGTTCAACTATTCTCA
1 AAAGCTTAGGTTCAACTATTCTCA
*
75600909 AAAGCTTAGGTTCAGCTATTCTCA
1 AAAGCTTAGGTTCAACTATTCTCA
75600933 A
1 A
75600934 GCTTGATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (24 bp):
AAAGCTTAGGTTCAACTATTCTCA
Found at i:75602685 original size:42 final size:43
Alignment explanation
Indices: 75602609--75602750 Score: 125
Period size: 42 Copynumber: 3.3 Consensus size: 43
75602599 TTCCAGATAT
* * *
75602609 GGTCTTACA--TAGTATCACATATCAAT-CCATTGTCCCAAATAG
1 GGTCTTACACGTAATATCA-ATA-CAATGCCAATGTCCCAAACAG
* * *
75602651 GGTCTTACACG-AA-ATCAATAACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATATCAAT-ACAATGCCAATGTCCCAAACAG
* *
75602693 GGTCTTACACGTAATCTCAATACAATGCCAATGT-CCAAGACAT
1 GGTCTTACACGTAATATCAATACAATGCCAATGTCCCAA-ACAG
*
75602736 GGTCTTACATGTAAT
1 GGTCTTACACGTAAT
75602751 CACATCTTGA
Statistics
Matches: 83, Mismatches: 10, Indels: 13
0.78 0.09 0.12
Matches are distributed among these distances:
41 5 0.06
42 40 0.48
43 33 0.40
44 5 0.06
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAATATCAATACAATGCCAATGTCCCAAACAG
Found at i:75602734 original size:43 final size:44
Alignment explanation
Indices: 75602651--75602751 Score: 145
Period size: 43 Copynumber: 2.4 Consensus size: 44
75602641 TCCCAAATAG
* * *
75602651 GGTCTTACACG-AA-ATCAATAACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCTCAATAACAATGCCAATGTCCAAGACAT
75602693 GGTCTTACACGTAATCTCAAT-ACAATGCCAATGTCCAAGACAT
1 GGTCTTACACGTAATCTCAATAACAATGCCAATGTCCAAGACAT
*
75602736 GGTCTTACATGTAATC
1 GGTCTTACACGTAATC
75602752 ACATCTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 11 0.21
43 37 0.70
44 5 0.09
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (44 bp):
GGTCTTACACGTAATCTCAATAACAATGCCAATGTCCAAGACAT
Found at i:75606706 original size:56 final size:56
Alignment explanation
Indices: 75606639--75606746 Score: 182
Period size: 56 Copynumber: 1.9 Consensus size: 56
75606629 TTCTACTTCG
*
75606639 AATTTGTGGTCTTAAAACCACTG-TTCTGACTAGACCCTAATTCGAGATGTTATTCA
1 AATTTGTGGTCTCAAAACCACTGTTTC-GACTAGACCCTAATTCGAGATGTTATTCA
*
75606695 AATTTGTGGTCTCAAAACCACTGTTTCGACTAGACCCTAATTCGGGATGTTA
1 AATTTGTGGTCTCAAAACCACTGTTTCGACTAGACCCTAATTCGAGATGTTA
75606747 CACCTAGGAC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
56 46 0.94
57 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (56 bp):
AATTTGTGGTCTCAAAACCACTGTTTCGACTAGACCCTAATTCGAGATGTTATTCA
Found at i:75611802 original size:48 final size:48
Alignment explanation
Indices: 75611728--75611955 Score: 154
Period size: 50 Copynumber: 4.6 Consensus size: 48
75611718 GGGTAAGGTA
* *
75611728 CCGATGCCATG-TCCTGGACATAGTCTTACACTGGCTCACACATCAAAG
1 CCGATGCCATGTTCC-AGACATGGTCTTACACTGGCTCACACATCAAAG
* * * ** * * *
75611776 TCTATGCCATGTTCCAGACATGGTCTTACACTGACTGTCGTATATCGAGG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGC--TCACACATCAAAG
* * ***
75611826 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACA-C-ATCAAAG
* * * * * * *
75611876 CCGATGCCATG-TCTTAGACATGGTCTTACAGTAGCTCTCATATCTCGAGG
1 CCGATGCCATGTTC-CAGACATGGTCTTACACTGGCTCACACA--TCAAAG
* *
75611926 CCAATGCCATGTCCCAGACATGGTCTTACA
1 CCGATGCCATGTTCCAGACATGGTCTTACA
75611956 TTAGCACTCA
Statistics
Matches: 142, Mismatches: 29, Indels: 16
0.76 0.16 0.09
Matches are distributed among these distances:
48 30 0.21
49 4 0.03
50 107 0.75
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACACATCAAAG
Found at i:75611935 original size:100 final size:99
Alignment explanation
Indices: 75611731--75612021 Score: 311
Period size: 100 Copynumber: 2.9 Consensus size: 99
75611721 TAAGGTACCG
** * * ** * * *
75611731 ATGCCATGTCCTGGACATAGTCTTACACTGGCTCACA-C-ATCAAAGTCTATGCCATGT-TCCAG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATC-GGGCCGATGCCATGTCT-TAG
* * * *
75611793 ACATGGTCTTACACT-GACTGTCGTATATCGAGGCCG
64 ACATGGTCTTACACTAG-CTCTCATATCTCGAGGCCA
75611829 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCTTAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGG-GCCGATGCCATGTCTTAGA
*
75611894 CATGGTCTTACAGTAGCTCTCATATCTCGAGGCCA
65 CATGGTCTTACACTAGCTCTCATATCTCGAGGCCA
* * * * * * *
75611929 ATGCCATGTCCCAGACATGGTCTTACATTAGCACTCATATCTCGAGGCCGATGCCATGTCCTATA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCG-GGCCGATGCCATGTCTTAGA
*
75611994 CATGGTATTACACTAGCTCTCATATCTC
65 CATGGTCTTACACTAGCTCTCATATCTC
75612022 CCTAGCATCA
Statistics
Matches: 164, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
98 33 0.20
99 1 0.01
100 127 0.77
101 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (99 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGGCCGATGCCATGTCTTAGAC
ATGGTCTTACACTAGCTCTCATATCTCGAGGCCA
Found at i:75612019 original size:50 final size:50
Alignment explanation
Indices: 75611779--75612021 Score: 310
Period size: 50 Copynumber: 4.9 Consensus size: 50
75611769 ATCAAAGTCT
* * * *
75611779 ATGCCATGTTCCAGACATGGTCTTACACT-GACTGTCGTATATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATCTCGAGGCCG
* * *
75611829 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCG-GTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG-GCCG
** * *
75611879 ATGCCATGTCTTAGACATGGTCTTACAGTAGCTCTCATATCTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCG
* *
75611929 ATGCCATGTCCCAGACATGGTCTTACATTAGCACTCATATCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCG
* * *
75611979 ATGCCATGTCCTATACATGGTATTACACTAGCTCTCATATCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
75612022 CCTAGCATCA
Statistics
Matches: 169, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 1 0.01
50 166 0.98
51 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCG
Found at i:75622292 original size:20 final size:20
Alignment explanation
Indices: 75622249--75622292 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
75622239 CCGGTTAGGG
* **
75622249 ACACGGGCGTGTCCCAGGCC
1 ACACGGGCATGTCCCAGGAA
*
75622269 ACACGGGCATGTCCTAGGAA
1 ACACGGGCATGTCCCAGGAA
75622289 ACAC
1 ACAC
75622293 AGGCGTGTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.34, G:0.30, T:0.11
Consensus pattern (20 bp):
ACACGGGCATGTCCCAGGAA
Found at i:75627110 original size:42 final size:42
Alignment explanation
Indices: 75627051--75627202 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 42
75627041 ATTAAGATTA
*
75627051 CGTGTAAGACCACATCTGGGATATGGCATCGATATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
*
75627093 CGTGTAAGACCATATCTGGGATATGACATCGATATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
* * **
75627135 TGTGTAAGACCATAGCTGGGCCAT-TGGCATCGATACAAGA-TT
1 CGTGTAAGACCATATCTGGG--ATATGGCATCGATATGAGACTT
* **
75627177 ACATGTATTACCATATCTGGGATATG
1 -CGTGTAAGACCATATCTGGGATATG
75627203 CCATTGGTAC
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.02
42 62 0.66
43 28 0.30
44 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
Found at i:75630356 original size:46 final size:45
Alignment explanation
Indices: 75630262--75630384 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 45
75630252 GGTGGCATGT
*
75630262 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAG-CACATTACGA
*
75630308 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-G-GCATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACATT---ACGA
* *
75630354 GAGCTAGTGT-AGGCATGTCTGGGACATGCAT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCAT
75630385 TGGCCTCAGG
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
43 4 0.06
45 21 0.30
46 45 0.64
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.22
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACATTACGA
Found at i:75630467 original size:49 final size:49
Alignment explanation
Indices: 75630401--75630525 Score: 130
Period size: 49 Copynumber: 2.6 Consensus size: 49
75630391 CAGGATATAC
* *
75630401 AAGCTAGTGTAAAACCTATCTGGGACATGGCAT-AGACACTGATAGATGA
1 AAGCCAGTGTAAGACCTATCTGGGACATGGCATCAGACAC-GATAGATGA
*** *
75630450 GAA-CCAGTGTAAGACCTA-CTTGGGACATGGCATCAGTTTCGATATATGA
1 -AAGCCAGTGTAAGACCTATC-TGGGACATGGCATCAGACACGATAGATGA
* *
75630499 AAGTCAGTGTAAGACCTGTCTGGGACA
1 AAGCCAGTGTAAGACCTATCTGGGACA
75630526 CGACATCGAC
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
48 3 0.05
49 54 0.86
50 6 0.10
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
AAGCCAGTGTAAGACCTATCTGGGACATGGCATCAGACACGATAGATGA
Found at i:75636067 original size:6 final size:6
Alignment explanation
Indices: 75636058--75636156 Score: 58
Period size: 6 Copynumber: 16.5 Consensus size: 6
75636048 ACTCTCGATC
* * ** *
75636058 TCTTTT TCTTTT TCCTTC TCTTTT TCTTTT TCAATT TCTTTT TCAATTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC-TTTT
* ** ** **
75636107 TC-TCT TCTTGA TCAATT T-TTTT TCTTTT TCAATT TCATTTT TCTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC-TTTT TCTTTT
75636154 TCT
1 TCT
75636157 CACTTTGTTT
Statistics
Matches: 67, Mismatches: 22, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
5 7 0.10
6 51 0.76
7 9 0.13
ACGTcount: A:0.10, C:0.19, G:0.01, T:0.70
Consensus pattern (6 bp):
TCTTTT
Found at i:75636097 original size:18 final size:18
Alignment explanation
Indices: 75636029--75636155 Score: 74
Period size: 18 Copynumber: 7.3 Consensus size: 18
75636019 ACTCAATTTA
75636029 TTTTTCAATTTTCTTTTTC
1 TTTTTCAA-TTTCTTTTTC
** * * *
75636048 ACTCTCGATCTCTTTTTC
1 TTTTTCAATTTCTTTTTC
*
75636066 TTTTTC-CTTCTCTTTTTC
1 TTTTTCAATT-TCTTTTTC
75636084 TTTTTCAA------TTTC
1 TTTTTCAATTTCTTTTTC
*
75636096 TTTTTCAATTT-TCTCTTC
1 TTTTTCAATTTCT-TTTTC
**
75636114 TTGATCAATTT-TTTTTC
1 TTTTTCAATTTCTTTTTC
75636131 TTTTTCAATTTCATTTTTC
1 TTTTTCAATTTC-TTTTTC
75636150 TTTTTC
1 TTTTTC
75636156 TCACTTTGTT
Statistics
Matches: 81, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
12 12 0.15
17 14 0.17
18 39 0.48
19 16 0.20
ACGTcount: A:0.11, C:0.20, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTTCAATTTCTTTTTC
Found at i:75636174 original size:19 final size:20
Alignment explanation
Indices: 75636124--75636175 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
75636114 TTGATCAATT
*
75636124 TTTTTTCTTTTTCAATTTCA
1 TTTTTTCTTTCTCAATTTCA
* * *
75636144 TTTTTCTTTTTCTCACTTT-G
1 TTTTT-TCTTTCTCAATTTCA
75636164 TTTTTTCTTTCT
1 TTTTTTCTTTCT
75636176 TTCACACTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 6 0.23
20 10 0.38
21 10 0.38
ACGTcount: A:0.08, C:0.17, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTTTCTTTCTCAATTTCA
Found at i:75639871 original size:24 final size:24
Alignment explanation
Indices: 75639842--75639942 Score: 166
Period size: 24 Copynumber: 4.2 Consensus size: 24
75639832 GGCCTTACCT
* * *
75639842 CTTTTAATAACTTGGGTAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
75639866 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
75639890 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
75639914 CTTTTAATGACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
75639938 CTTTT
1 CTTTT
75639943 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:75640017 original size:20 final size:20
Alignment explanation
Indices: 75639992--75640058 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
75639982 TTATGAATAC
75639992 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75640012 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
75640032 GTCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
*
75640052 ACCATGT
1 ATCATGT
75640059 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75640023 original size:11 final size:11
Alignment explanation
Indices: 75639992--75640048 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
75639982 TTATGAATAC
75639992 ATCATGTGCAT
1 ATCATGTGCAT
*
75640003 ATCA--TACAT
1 ATCATGTGCAT
75640012 ATCATGTGCAT
1 ATCATGTGCAT
*
75640023 ATCA--TACAT
1 ATCATGTGCAT
*
75640032 GTCATGTGCAT
1 ATCATGTGCAT
75640043 ATCATG
1 ATCATG
75640049 CATACCATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:75640134 original size:24 final size:24
Alignment explanation
Indices: 75640106--75640165 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
75640096 CTAGGGGTAT
*
75640106 AATGGTCATTTTTACTTAGGGCAA
1 AATGGTCATTTTTACCTAGGGCAA
75640130 AATGGTCATTTTTACCTAGGGCAA
1 AATGGTCATTTTTACCTAGGGCAA
75640154 AATGGTCATTTT
1 AATGGTCATTTT
75640166 CATGTTATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.38
Consensus pattern (24 bp):
AATGGTCATTTTTACCTAGGGCAA
Found at i:75655776 original size:93 final size:93
Alignment explanation
Indices: 75655663--75655832 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
75655653 CCCATAAGTG
* *
75655663 AACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACACAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACACAACTCAAC
75655728 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* * *
75655756 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACACAACTCAAC
* *
75655821 GAGTTTGGATGC
66 GAGCTCGGATGC
75655833 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACACAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:75655825 original size:46 final size:46
Alignment explanation
Indices: 75655654--75655823 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
75655644 TGTAACCCGC
* *
75655654 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
75655700 CCATAAGTGAACTCAGACACAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
75655750 CTC-TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
75655793 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAG
75655824 TTTGGATGCT
Statistics
Matches: 102, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
46 56 0.55
47 25 0.25
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:75658206 original size:131 final size:131
Alignment explanation
Indices: 75657890--75658407 Score: 415
Period size: 131 Copynumber: 4.0 Consensus size: 131
75657880 TAGAAAATAC
** * * * * ** * *
75657890 GAGTGAAATTCCGAAGGGATCTTCGATTAGTTTG-GACAAATGAAAAAGCGCAACCCAGCACGAT
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTTGAG-CAAACGAGAAATTGCAACCTAGCACGTT
* * * * *
75657954 AGGGCACGATTCTCA--AATCGCCAAACATCGAACATCGCCTTCGTTTTGAAAGG-TTTTTAATA
65 AGGGCATGATTC-CACGAATTGCCAAACATCAAATATCACCTTCGTTTT-AAAGGATTTTTAA-A
* *
75658016 AATAT
127 GACAT
* * * ** * *
75658021 GAGTGAAAATCTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAATCACAACCTAGCAGGATA
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCTAGCACGTTA
* * *
75658086 GGGCATAATTCC-CGAATTGTCAAACA-CTAAATATTACCTTCGTTTTAAAGGATTTTTAGAAGA
66 GGGCATGATTCCACGAATTGCCAAACATC-AAATATCACCTTCGTTTTAAAGGATTTTTA-AAGA
75658149 CAT
129 CAT
* * * * * *
75658152 GAGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAACGGGAAATTGCAACCCAGCACGTTA
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCTAGCACGTTA
* * * * * ** * *
75658217 GAGCACGATTCCGCGAATTACCAAATATCGCATATCGCCTTCG-TTTAAGGGATTTTTAAAAGAC
66 GGGCATGATTCCACGAATTGCCAAACATCAAATATCACCTTCGTTTTAAAGGATTTTT-AAAGAC
75658281 AT
130 AT
* ** * * * * *
75658283 GGGTGAAATTCTAAAGGGACCTTCGATCACTTTGAGCGAATGAGAAATTGCAACCTAACACGTTA
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCTAGCACGTTA
* * *
75658348 GGGCATGATTCCACGAATTGCCAAGA-ATCGAATATCGA-CTTCGTTTTAAAGAATTCTTAA
66 GGGCATGATTCCACGAATTGCCAA-ACATCAAATATC-ACCTTCGTTTTAAAGGATTTTTAA
75658408 TAATTGTGAA
Statistics
Matches: 305, Mismatches: 70, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
130 7 0.02
131 261 0.86
132 36 0.12
133 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (131 bp):
GAGTGAAATTCTAAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCTAGCACGTTA
GGGCATGATTCCACGAATTGCCAAACATCAAATATCACCTTCGTTTTAAAGGATTTTTAAAGACA
T
Found at i:75662045 original size:16 final size:16
Alignment explanation
Indices: 75662024--75662058 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
75662014 TGTGCAAGTC
*
75662024 AACCATACAAGCAATT
1 AACCATACAAGCAACT
75662040 AACCATACAAGCAACT
1 AACCATACAAGCAACT
75662056 AAC
1 AAC
75662059 ACAACATCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.29, G:0.06, T:0.14
Consensus pattern (16 bp):
AACCATACAAGCAACT
Found at i:75664649 original size:20 final size:20
Alignment explanation
Indices: 75664624--75664668 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
75664614 CGAAAAATGA
75664624 TTTCTGGAAAATTATTTACT
1 TTTCTGGAAAATTATTTACT
75664644 TTTCTGGAAAATTATTTACT
1 TTTCTGGAAAATTATTTACT
75664664 TTTCT
1 TTTCT
75664669 AAAAAAGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (20 bp):
TTTCTGGAAAATTATTTACT
Found at i:75664674 original size:20 final size:20
Alignment explanation
Indices: 75664631--75664674 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
75664621 TGATTTCTGG
**
75664631 AAAATTATTTACTTTTCTGG
1 AAAATTATTTACTTTTCTAA
75664651 AAAATTATTTACTTTTCTAA
1 AAAATTATTTACTTTTCTAA
75664671 AAAA
1 AAAA
75664675 GCTAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (20 bp):
AAAATTATTTACTTTTCTAA
Found at i:75678211 original size:49 final size:49
Alignment explanation
Indices: 75678138--75678236 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
75678128 GATGTATTTT
* * *
75678138 TACTAAAAAGGATAGTTGACTTGTCAAAGTTTACACACTGACTCGAACC
1 TACTAAAAAAGATAATTGACTTGTCAAAGTTTACACACTAACTCGAACC
* *
75678187 TACTAAAAAAGATAATTGATTTGTCAAAGTTTACACACTAACTTGAACC
1 TACTAAAAAAGATAATTGACTTGTCAAAGTTTACACACTAACTCGAACC
75678236 T
1 T
75678237 TTTTTGTACT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (49 bp):
TACTAAAAAAGATAATTGACTTGTCAAAGTTTACACACTAACTCGAACC
Found at i:75681841 original size:15 final size:15
Alignment explanation
Indices: 75681823--75681890 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 15
75681813 AAAATAAAAA
75681823 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
75681838 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
75681855 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
75681872 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
75681885 ATATTT
1 ATATTT
75681891 TCAATAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.25
15 12 0.27
16 1 0.02
17 7 0.16
18 1 0.02
19 9 0.20
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:75681997 original size:22 final size:22
Alignment explanation
Indices: 75681969--75682012 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
75681959 ATATGAAATA
75681969 ATTTATTAAAATAATAAATTAT
1 ATTTATTAAAATAATAAATTAT
* * *
75681991 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAAATTAT
75682013 CATATGACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTATTAAAATAATAAATTAT
Found at i:75685364 original size:47 final size:48
Alignment explanation
Indices: 75685294--75685603 Score: 245
Period size: 47 Copynumber: 6.6 Consensus size: 48
75685284 GTAAGGTGCT
* * * *
75685294 GATGCTATGTCCTAGACACGGTCTTACACTGACTCAT-ATCTC-AAGTC
1 GATGCCATGTCCCAGACA-TGTCTTACACTGACTCATCGTCTCGAAGTC
* *
75685341 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAG-C
1 GATGCCATGTCCCAGACAT-GTCTTACACTGACTCATCGTCTCGAAGTC
* * * *
75685388 CAGTG-CATGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCGAGGTC
1 GA-TGCCATGTCCCAGACATGTCTTACACTGACTCATCGTCTCGAAGTC
* * * *
75685435 GATG-CATGTCCCAGAAATGTCTTACACTGGCTTA-CGTCTCGAGGTC
1 GATGCCATGTCCCAGACATGTCTTACACTGACTCATCGTCTCGAAGTC
* * *
75685481 GATG-CATGTCCCAGAAATGTCTTACACT-AGC-CCTCGTCTC-AATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGA-CTCATCGTCTCGAA-GTC
* * * *
75685527 GATGCCATGTCCCATAAATGTCTTACACT-AGC-CCTCGTCTC-AATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGA-CTCATCGTCTCGAA-GTC
*
75685574 GATGCCATGTCCCGGACATGGTCTTACACT
1 GATGCCATGTCCCAGACAT-GTCTTACACT
75685604 AGCTCTCACA
Statistics
Matches: 232, Mismatches: 20, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
45 1 0.00
46 106 0.46
47 111 0.48
48 14 0.06
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGTCTTACACTGACTCATCGTCTCGAAGTC
Found at i:75685429 original size:46 final size:46
Alignment explanation
Indices: 75685338--75685555 Score: 246
Period size: 46 Copynumber: 4.7 Consensus size: 46
75685328 CATATCTCAA
* * *
75685338 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTA-
1 GTCGATG-CATGTCCCAGAAAT-GTCTTACACTGGCTTA-CGTCTCG-AG
* *
75685386 G-CCAGTGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GTCGA-TGCATGTCCCAGAAATGTCTTACACTGGCTTACGTCTCGAG
75685432 GTCGATGCATGTCCCAGAAATGTCTTACACTGGCTTACGTCTCGAG
1 GTCGATGCATGTCCCAGAAATGTCTTACACTGGCTTACGTCTCGAG
* * * *
75685478 GTCGATGCATGTCCCAGAAATGTCTTACACTAGCCCT-CGTCTCAAT
1 GTCGATGCATGTCCCAGAAATGTCTTACACT-GGCTTACGTCTCGAG
* *
75685524 GCCGATGCCATGTCCCATAAATGTCTTACACT
1 GTCGATG-CATGTCCCAGAAATGTCTTACACT
75685556 AGCCCTCGTC
Statistics
Matches: 153, Mismatches: 11, Indels: 13
0.86 0.06 0.07
Matches are distributed among these distances:
45 1 0.01
46 103 0.67
47 46 0.30
48 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GTCGATGCATGTCCCAGAAATGTCTTACACTGGCTTACGTCTCGAG
Found at i:75689444 original size:40 final size:40
Alignment explanation
Indices: 75689407--75689592 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
75689397 GCTACTCGTT
* *
75689407 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75689447 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
75689487 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * ** *
75689527 CCAATGCCTTC-GGATCTTAGTCCGGATATGGCCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75689568 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75689593 CATCATTCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75689511 original size:80 final size:81
Alignment explanation
Indices: 75689374--75689592 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 81
75689364 AAATCACATA
* * ** *
75689374 CCTTCGGAAT-TTAA-CCGGATATAGCTAC-TCGTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGG-ATCTTAACCCGGATATAGCAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATT-
75689435 TAGTAACTCGCACAAATG
64 TAGTAACTCGCACAAATG
* * * *
75689453 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTT
1 CCTTC-GGATCTTAACCCGGATATAGCAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATTT
*
75689516 AGTAACTCGCACCAATG
65 AGTAACTCGCACAAATG
** * *
75689533 CCTTCGGATCTTAGTCCGGATATGGCCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGCAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGA
75689593 CATCATTCAA
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
79 13 0.11
80 95 0.81
81 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGCAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
GTAACTCGCACAAATG
Found at i:75708617 original size:27 final size:27
Alignment explanation
Indices: 75708586--75708790 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
75708576 TAAATTGTAC
75708586 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75708613 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75708639 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75708667 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
75708695 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
75708722 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75708749 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75708776 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75708791 GACTAAAAAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75708781 original size:109 final size:109
Alignment explanation
Indices: 75708586--75708790 Score: 277
Period size: 109 Copynumber: 1.9 Consensus size: 109
75708576 TAAATTGTAC
* *
75708586 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
* *
75708651 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
66 TGCGAATTGACCATACAGCACTAAGTGTGCGAGTTTGACTATGT
* ** *
75708695 AGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** * *
75708759 GTGCGAGTTGATTATATAGCACTGAGTGTGCG
65 GTGCGAATTGACCATACAGCACTAAGTGTGCG
75708791 GACTAAAAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
108 1 0.01
109 81 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (109 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATTGACCATACAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:75710720 original size:27 final size:27
Alignment explanation
Indices: 75710690--75710750 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
75710680 TTTACTAAAG
75710690 TACCCCTAAGTATG-AAAATTACCATTA
1 TACCCCTAAG-ATGCAAAATTACCATTA
* *
75710717 TA-CCCTTAGGTGCAAAATTACCATTA
1 TACCCCTAAGATGCAAAATTACCATTA
75710743 TACCCCTA
1 TACCCCTA
75710751 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 21 0.72
27 6 0.21
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCCTAAGATGCAAAATTACCATTA
Found at i:75710915 original size:27 final size:26
Alignment explanation
Indices: 75710854--75710940 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 26
75710844 TGGAGGAAGC
* * *
75710854 GTTCTGGCGGCTCTGCCACAAATATCT
1 GTTCTGGTGACTCTACCAC-AATATCT
* * *
75710881 AATT-TGGTGGCTCTACCACAATATTT
1 -GTTCTGGTGACTCTACCACAATATCT
*
75710907 GTATCTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGACTCTACCACAATATCT
75710934 GTTCTGG
1 GTTCTGG
75710941 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
25 1 0.02
26 12 0.24
27 34 0.69
28 2 0.04
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGACTCTACCACAATATCT
Found at i:75725379 original size:40 final size:40
Alignment explanation
Indices: 75725324--75725591 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
75725314 GAGCATTGGA
75725324 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
75725364 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
75725404 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
75725444 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
75725484 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
75725524 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
75725564 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
75725592 AGGTGTTTGC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:75742198 original size:27 final size:26
Alignment explanation
Indices: 75742158--75742272 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 26
75742148 ATGGAGGAAG
*
75742158 TGTTCTGGCT-GCTCTGCCACAAATATT
1 TGTTCTGG-TGGCTCTGCCAC-AATATC
75742185 TGTTCTGGTGGCTCTGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCAC-AATATC
*
75742212 TGTTTTTGGTGGCTCTGCCACAATATC
1 TG-TTCTGGTGGCTCTGCCACAATATC
* *
75742239 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTCTGCCACAATATC
75742266 TGTTCTG
1 TGTTCTG
75742273 TCAGCCATGC
Statistics
Matches: 80, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
26 6 0.08
27 57 0.71
28 17 0.21
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACAATATC
Found at i:75750329 original size:96 final size:96
Alignment explanation
Indices: 75750219--75750663 Score: 759
Period size: 96 Copynumber: 4.6 Consensus size: 96
75750209 GTGAACATGC
* *
75750219 ATATATGAGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
75750284 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
*
75750315 ATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
75750380 TTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
75750413 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTTATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
75750478 AATGGCCAATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
75750509 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
75750574 AATGGCCGATGTGATGAATGTGAAAGTG--T
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * *
75750603 ATATATGTGATAAGGCCTAATAGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
75750664 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 57 0.17
96 181 0.55
98 94 0.28
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (96 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:75750342 original size:49 final size:49
Alignment explanation
Indices: 75750219--75750663 Score: 739
Period size: 47 Copynumber: 9.3 Consensus size: 49
75750209 GTGAACATGC
* *
75750219 ATATATGAGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
75750266 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
75750315 ATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
75750364 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
75750413 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
75750461 -TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
75750509 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
75750556 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
75750603 ATATATGTGATAAGGCCTAATAGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
75750652 A-A-ATGTGATAAG
1 ATATATGTGATAAG
75750664 TCCCGAAGGG
Statistics
Matches: 380, Mismatches: 12, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
47 189 0.50
48 3 0.01
49 188 0.49
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:75750838 original size:37 final size:37
Alignment explanation
Indices: 75750782--75750860 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
75750772 CCGAGCTCTA
* * *
75750782 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
75750819 AAGATCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75750856 AAGAC
1 AAGAC
75750861 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75756416 original size:8 final size:8
Alignment explanation
Indices: 75756390--75756424 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
75756380 GCAAATCTCA
75756390 AAATGCCG
1 AAATGCCG
* *
75756398 AAAAGCTG
1 AAATGCCG
75756406 AAATGCCG
1 AAATGCCG
75756414 AAATGCCG
1 AAATGCCG
75756422 AAA
1 AAA
75756425 AGTTGGAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.46, C:0.20, G:0.23, T:0.11
Consensus pattern (8 bp):
AAATGCCG
Found at i:75756685 original size:28 final size:28
Alignment explanation
Indices: 75756645--75756747 Score: 127
Period size: 28 Copynumber: 3.7 Consensus size: 28
75756635 ATTGCATGAC
* *
75756645 TATGAGTGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* **
75756673 TATGAAGGTGATTGGGCCAAATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
75756701 TATGAATGTGATT-GGCCTCGATGGGCCA
1 TATGAATGTGATTGGGCCT-GATGGGCCA
* *
75756729 TATAAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
75756748 AAAGGGGCCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 4 0.06
28 54 0.86
29 5 0.08
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:75756711 original size:56 final size:57
Alignment explanation
Indices: 75756645--75756763 Score: 152
Period size: 56 Copynumber: 2.1 Consensus size: 57
75756635 ATTGCATGAC
* * * *
75756645 TATGAGTGTGATTGGGCCT-GACGGGCCATATGAAGGTGATTGGGCC-AAATGGGCCA
1 TATGAATGTGATT-GGCCTCGACGGGCCATATAAAGGAGATTGGGCCTAAAGGGGCCA
* *
75756701 TATGAATGTGATTGGCCTCGATGGGCCATATAAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGCCTCGACGGGCCATATAAAGGAGATTGGGCCTAAAGGGGCCA
*
75756758 AATGAA
1 TATGAA
75756764 GAAGTATGGA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 5 0.09
56 35 0.65
57 14 0.26
ACGTcount: A:0.28, C:0.15, G:0.34, T:0.24
Consensus pattern (57 bp):
TATGAATGTGATTGGCCTCGACGGGCCATATAAAGGAGATTGGGCCTAAAGGGGCCA
Found at i:75756808 original size:27 final size:27
Alignment explanation
Indices: 75756770--75756821 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
75756760 TGAAGAAGTA
* *
75756770 TGGATTTGTTAGTGTTTAGTAAGGGTT
1 TGGATTTGTTAGTGCTTAATAAGGGTT
75756797 TGGATTTGTTAGTGCTTAATAAGGG
1 TGGATTTGTTAGTGCTTAATAAGGG
75756822 GTTGTGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (27 bp):
TGGATTTGTTAGTGCTTAATAAGGGTT
Found at i:75763626 original size:28 final size:28
Alignment explanation
Indices: 75763578--75763674 Score: 131
Period size: 28 Copynumber: 3.5 Consensus size: 28
75763568 TGACTATAAG
**
75763578 TGTGATTGGGCCTGACAGGCCATATGAA
1 TGTGATTGGGCCTGATGGGCCATATGAA
* *
75763606 GGTGATTGGGCTTGATGGGCCATATGAA
1 TGTGATTGGGCCTGATGGGCCATATGAA
**
75763634 TGTGATTGGGCCCAATGGGCCATATGAA
1 TGTGATTGGGCCTGATGGGCCATATGAA
*
75763662 TGAGATTGGGCCT
1 TGTGATTGGGCCT
75763675 AAAGGGGCCA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (28 bp):
TGTGATTGGGCCTGATGGGCCATATGAA
Found at i:75763691 original size:29 final size:28
Alignment explanation
Indices: 75763595--75763691 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
75763585 GGGCCTGACA
* * *** *
75763595 GGCCATATGAAGGTGATTGGGCTTGATG
1 GGCCATATGAATGAGATTGGGCCAAAGG
* * *
75763623 GGCCATATGAATGTGATTGGGCCCAATG
1 GGCCATATGAATGAGATTGGGCCAAAGG
75763651 GGCCATATGAATGAGATTGGGCCTAAAGG
1 GGCCATATGAATGAGATTGGGCC-AAAGG
*
75763680 GGCCAAATGAAT
1 GGCCATATGAAT
75763692 AAGTATGGAT
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 46 0.77
29 14 0.23
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (28 bp):
GGCCATATGAATGAGATTGGGCCAAAGG
Found at i:75775572 original size:28 final size:28
Alignment explanation
Indices: 75775509--75775606 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
75775499 AGATTAAGTC
*
75775509 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
75775536 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75775564 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
75775593 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75775607 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75784842 original size:12 final size:12
Alignment explanation
Indices: 75784825--75784850 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75784815 TGTTCAGTTT
75784825 GATGGTTTGCAG
1 GATGGTTTGCAG
75784837 GATGGTTTGCAG
1 GATGGTTTGCAG
75784849 GA
1 GA
75784851 CAAGGATCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.08, G:0.42, T:0.31
Consensus pattern (12 bp):
GATGGTTTGCAG
Found at i:75792002 original size:93 final size:93
Alignment explanation
Indices: 75791889--75792060 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
75791879 CGCCCATAAG
* * * *
75791889 CGAACTCGGTCTCAACTCAACGAGCTGGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75791954 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
75791982 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
75792047 AGGAGTTCGGATGC
66 ACGAGCTCGGATGC
75792061 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:75792053 original size:46 final size:46
Alignment explanation
Indices: 75791882--75792057 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
75791872 TGTAACCCGC
* * * *
75791882 CCATAAGCGAACTCGGTCTCAACTCAACGAGCTGGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
75791928 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
75791978 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
75792021 CCATAAGTGAACTCGGACTCAACTCAAGGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
75792058 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:75792076 original size:46 final size:44
Alignment explanation
Indices: 75791933--75792076 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
75791923 CGCATCCATA
*
75791933 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
75791980 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
75792026 AGTGAACTCGGACTCAACTCAAGGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
75792072 AGTGA
1 AGTGA
75792077 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.41
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:75795751 original size:27 final size:27
Alignment explanation
Indices: 75795715--75795962 Score: 352
Period size: 27 Copynumber: 9.2 Consensus size: 27
75795705 AAAGGTCGTT
* *
75795715 AAATGACCGTAATGCCTCTGTAGAGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
75795742 AAATAACCGTAATGCTCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
75795769 AAATGACCGTGATGCCCTTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* * *
75795796 AAATGACTGTAATGCCCCTATAGAGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
75795823 AAACGACCGTAATGCCCCTATAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
75795850 AAATGACCGTAATGCCACTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
75795877 AAATGATCGTAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
75795904 AAATGACCATAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
75795931 AAATGACCGTAATACCCCTGTATGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
75795958 AAATG
1 AAATG
75795963 TCGATTATGC
Statistics
Matches: 195, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 195 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (27 bp):
AAATGACCGTAATGCCCCTGTAGGGTA
Found at i:75796191 original size:27 final size:27
Alignment explanation
Indices: 75796105--75796199 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 27
75796095 GGAAGTTTTG
* * *
75796105 TACTGGTGACTATGTCACATTCACTGT
1 TACTGGTGGCTATGCCACATTTACTGT
* * **
75796132 TACTGGTGGCTATGCCACAATTATTAA
1 TACTGGTGGCTATGCCACATTTACTGT
*
75796159 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGGCTATGCCACATTTACTGT
* *
75796186 TTCTGGTAGCTATG
1 TACTGGTGGCTATG
75796200 TTGCATTATT
Statistics
Matches: 53, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTTACTGT
Found at i:75796449 original size:33 final size:33
Alignment explanation
Indices: 75796396--75796502 Score: 189
Period size: 33 Copynumber: 3.2 Consensus size: 33
75796386 ATAAGGCTAG
75796396 GGCCCAGATTGTAC-AGATACTGAATAGGGCTTA
1 GGCCCAGATTGTACTA-ATACTGAATAGGGCTTA
*
75796429 GGCCTAGATTGTACTAATACTGAATAGGGCTTA
1 GGCCCAGATTGTACTAATACTGAATAGGGCTTA
75796462 GGCCCAGATTGTACTAATACTGAATAGGGCTTA
1 GGCCCAGATTGTACTAATACTGAATAGGGCTTA
75796495 GGCCCAGA
1 GGCCCAGA
75796503 CTATGTTATT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
33 70 0.99
34 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (33 bp):
GGCCCAGATTGTACTAATACTGAATAGGGCTTA
Found at i:75804552 original size:30 final size:30
Alignment explanation
Indices: 75804516--75804575 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
75804506 TTCCCGAGCC
*
75804516 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
75804546 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
75804576 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:75807576 original size:39 final size:39
Alignment explanation
Indices: 75807533--75807622 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
75807523 AATTAATATT
*
75807533 GTCCGCAGGCTATAAGCGAGAATTACATTCGGACTTCAA
1 GTCCGCAGGCTATAAGCGAGAATTACATCCGGACTTCAA
* * * *
75807572 GTCCGCAGGCTATATGCGAGAATTATATCCGGACTTTAG
1 GTCCGCAGGCTATAAGCGAGAATTACATCCGGACTTCAA
75807611 GTCCGCAGGCTA
1 GTCCGCAGGCTA
75807623 CGTGCTGGAC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
GTCCGCAGGCTATAAGCGAGAATTACATCCGGACTTCAA
Found at i:75814765 original size:39 final size:39
Alignment explanation
Indices: 75814711--75814821 Score: 159
Period size: 39 Copynumber: 2.8 Consensus size: 39
75814701 TATATACGCA
*
75814711 AGAATTATATCCGGACTTCAGGTCCACAGGCTATAAGCG
1 AGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGCG
* * * *
75814750 AGAATTATATCCGGACGTCATGTCCGCAGGCTATATGTG
1 AGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGCG
* *
75814789 AGAATTATATCCAGACTTTAGGTCCGCAGGCTA
1 AGAATTATATCCGGACTTCAGGTCCGCAGGCTA
75814822 CGTGCTGGAC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (39 bp):
AGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGCG
Found at i:75830059 original size:41 final size:41
Alignment explanation
Indices: 75830002--75830192 Score: 303
Period size: 41 Copynumber: 4.7 Consensus size: 41
75829992 TCGGGGTTTA
75830002 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
75830043 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
75830084 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
75830125 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
75830165 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
75830193 TGAGTCAGCG
Statistics
Matches: 135, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
40 32 0.24
41 103 0.76
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:75830196 original size:82 final size:82
Alignment explanation
Indices: 75830002--75830192 Score: 303
Period size: 81 Copynumber: 2.3 Consensus size: 82
75829992 TCGGGGTTTA
* * *
75830002 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAACCTAGTCTCGAAGGGC
* * *
75830067 TTTTGAGCCAGTGTCAT
66 CTTCGAGCCAATGTCAT
*
75830084 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAA-CCGAACCTAGTTTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAACCTAGTCTCGAAGGGC
*
75830148 CTTCGGGCCAATGTCAT
66 CTTCGAGCCAATGTCAT
75830165 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
75830193 TGAGTCAGCG
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
81 58 0.57
82 43 0.43
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (82 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAACCTAGTCTCGAAGGGC
CTTCGAGCCAATGTCAT
Found at i:75835913 original size:12 final size:13
Alignment explanation
Indices: 75835896--75835927 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75835886 ATAGCACATT
75835896 TCAAAAC-ATGCA
1 TCAAAACTATGCA
75835908 TCAAAACTATGCA
1 TCAAAACTATGCA
75835921 -CAAAACT
1 TCAAAACT
75835928 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:75843272 original size:30 final size:30
Alignment explanation
Indices: 75843231--75843290 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
75843221 TTCCCGAGCC
75843231 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
75843261 TAGGGGTAAAAGTGTAATTATGCCAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
75843291 CGTATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.40, C:0.05, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:75850763 original size:40 final size:40
Alignment explanation
Indices: 75850615--75850799 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
75850605 TTGAATGATG
* * * **
75850615 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** *
75850655 TCCAGATTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75850695 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75850734 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75850775 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75850800 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75850821 original size:79 final size:79
Alignment explanation
Indices: 75850668--75850822 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
75850658 AGATTAAGAT
* **
75850668 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
75850733 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
75850747 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
75850810 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
75850823 ATTTCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:75859109 original size:40 final size:40
Alignment explanation
Indices: 75858876--75859095 Score: 245
Period size: 40 Copynumber: 5.5 Consensus size: 40
75858866 TGATGTCCGA
* * * **
75858876 GCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATGTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGG
* * *
75858916 ACTCAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGG
1 GCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGG
*
75858956 GCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGG
*
75858995 GTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
*
75859035 ACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
*
75859075 GCTATGTCCCGAAGGCATTTG
1 GCTAAGTCCCGAAGGCATTTG
75859096 AACGAGTAGC
Statistics
Matches: 155, Mismatches: 16, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
39 35 0.23
40 109 0.70
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
Found at i:75859117 original size:119 final size:119
Alignment explanation
Indices: 75858878--75859128 Score: 312
Period size: 119 Copynumber: 2.1 Consensus size: 119
75858868 ATGTCCGAGC
** *
75858878 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATGTCCGGACTCAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
* **
75858943 TTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
66 TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGT
* * *
75858997 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGA
* * *
75859061 GTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
65 GTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGT
* *
75859116 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
75859129 TACGTGATTC
Statistics
Matches: 114, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
118 2 0.02
119 81 0.71
120 31 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGT
Found at i:75862196 original size:15 final size:15
Alignment explanation
Indices: 75862176--75862207 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
75862166 ACTTTCAAGC
75862176 TTCATAGTAAGTGAT
1 TTCATAGTAAGTGAT
75862191 TTCATAGTAAGTGAT
1 TTCATAGTAAGTGAT
75862206 TT
1 TT
75862208 TTATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (15 bp):
TTCATAGTAAGTGAT
Found at i:75862538 original size:16 final size:16
Alignment explanation
Indices: 75862517--75862570 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
75862507 GAGCCTAGGG
75862517 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
* * *
75862533 GCAAAAGT-TTA-GAG
1 GCAAAAGTGTAATTAT
75862547 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
*
75862563 GCCAAAGT
1 GCAAAAGT
75862571 TCATATTAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
14 9 0.31
15 4 0.14
16 16 0.55
ACGTcount: A:0.43, C:0.09, G:0.22, T:0.26
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:75863390 original size:331 final size:331
Alignment explanation
Indices: 75862787--75863449 Score: 1191
Period size: 331 Copynumber: 2.0 Consensus size: 331
75862777 ATATGATATG
75862787 ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
1 ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
* * *
75862852 ATTACTTGATGAGTATGAACTATCACCGAGTATCAGTTCCGATATTCCGTTGACGACGGCAAAGA
66 ATTACTTGATGAGTATAAACTATCACCGAGTATCAGTTCCGATATTCCGTGGAAGACGGCAAAGA
* * *
75862917 TGTGAGGTCGAGGAAAAATCCCGTTTGAACCTTAGGAATAGATTAGAATACAAGTGACATGTCAC
131 TGTGAGATAGAGGAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGAATACAAGTGACATGTCAC
* *
75862982 TAGGATATTTGAGTTCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGTTGTAACTAGGCATCCG
196 TAGGATATTTGAGTTCAGAACTCGTTGAGTTGAGTCCGAATTCGTGAGTTGTAACTAGGCATCCG
* *
75863047 AACTCATTGAGTTGAGTCCGAGTTCACTTATGAACGTGAACGCCCGAGCTCGTTGAGTTGAGTCC
261 AACTCATTGAGTTGAGTCCGAGTTCACTTATGAACGCGAACGCCCGAGCTCATTGAGTTGAGTCC
75863112 GAGTTC
326 GAGTTC
75863118 ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
1 ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
*
75863183 ATTACTTGATGAGTATAAACTATCACCGAGTATCGGTTCCGATATTCCGTGGAAGACGGCAAAGA
66 ATTACTTGATGAGTATAAACTATCACCGAGTATCAGTTCCGATATTCCGTGGAAGACGGCAAAGA
75863248 TGTGAGATAGAGGAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGAATACAAGTGACATGTCAC
131 TGTGAGATAGAGGAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGAATACAAGTGACATGTCAC
75863313 TAGGATATTTGAGTTCAGAACTCGTTGAGTTGAGTCCGAATTCGTGAGTTGTAACTAGGCATCCG
196 TAGGATATTTGAGTTCAGAACTCGTTGAGTTGAGTCCGAATTCGTGAGTTGTAACTAGGCATCCG
* * * *
75863378 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCATTGAGTTGAGTCC
261 AACTCATTGAGTTGAGTCCGAGTTCACTTATGAACGCGAACGCCCGAGCTCATTGAGTTGAGTCC
75863443 GAGTTC
326 GAGTTC
75863449 A
1 A
75863450 CTTATGGGCG
Statistics
Matches: 317, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
331 317 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (331 bp):
ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
ATTACTTGATGAGTATAAACTATCACCGAGTATCAGTTCCGATATTCCGTGGAAGACGGCAAAGA
TGTGAGATAGAGGAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGAATACAAGTGACATGTCAC
TAGGATATTTGAGTTCAGAACTCGTTGAGTTGAGTCCGAATTCGTGAGTTGTAACTAGGCATCCG
AACTCATTGAGTTGAGTCCGAGTTCACTTATGAACGCGAACGCCCGAGCTCATTGAGTTGAGTCC
GAGTTC
Found at i:75865396 original size:12 final size:13
Alignment explanation
Indices: 75865379--75865410 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75865369 ATAGCACATT
75865379 TCAAAAC-ATGCA
1 TCAAAACTATGCA
75865391 TCAAAACTATGCA
1 TCAAAACTATGCA
75865404 -CAAAACT
1 TCAAAACT
75865411 TAACATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:75866364 original size:29 final size:29
Alignment explanation
Indices: 75866322--75866404 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
75866312 CTTACATTTT
* *
75866322 TCACACTTATATGGCTCGTTAGGCCCAAA
1 TCACATTTATATGGCCCGTTAGGCCCAAA
*
75866351 TCACATTTATATGGCCCATTAGGCCCAAA
1 TCACATTTATATGGCCCGTTAGGCCCAAA
75866380 TCACATTTATATGGCCCGTTAGGCC
1 TCACATTTATATGGCCCGTTAGGCC
75866405 TAGTCACATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (29 bp):
TCACATTTATATGGCCCGTTAGGCCCAAA
Found at i:75866500 original size:17 final size:18
Alignment explanation
Indices: 75866478--75866511 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75866468 TGCCTATTAT
75866478 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
75866495 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
75866512 TCTGGCCCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:75875302 original size:21 final size:21
Alignment explanation
Indices: 75875276--75875317 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
75875266 GCCGCGCCAA
75875276 AAGAACTATCCGACACACGAT
1 AAGAACTATCCGACACACGAT
*
75875297 AAGAACTATCCGACGCACGAT
1 AAGAACTATCCGACACACGAT
75875318 CTTAAATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.29, G:0.17, T:0.14
Consensus pattern (21 bp):
AAGAACTATCCGACACACGAT
Found at i:75881998 original size:27 final size:27
Alignment explanation
Indices: 75881951--75882078 Score: 100
Period size: 27 Copynumber: 4.7 Consensus size: 27
75881941 CTTTAGAGAA
*
75881951 CGCCACAAAAGGATTCC-TTTCAAAGAT
1 CGCCAC-AAAGGTTTCCTTTTCAAAGAT
* **
75881978 TGCCACAAAGGTTTCCTTTTCTTAGAT
1 CGCCACAAAGGTTTCCTTTTCAAAGAT
* *
75882005 CGCTACAAA-GTCTTCATTTTCATAA-AT
1 CGCCACAAAGGT-TTCCTTTTCA-AAGAT
* * * * *
75882032 CACCGCAAAGGATTCATTTTCATAGAT
1 CGCCACAAAGGTTTCCTTTTCAAAGAT
*
75882059 CACCACAAAGGTTTCCTTTT
1 CGCCACAAAGGTTTCCTTTT
75882079 TTGGGCGTGT
Statistics
Matches: 79, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
26 12 0.15
27 65 0.82
28 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (27 bp):
CGCCACAAAGGTTTCCTTTTCAAAGAT
Found at i:75885851 original size:27 final size:27
Alignment explanation
Indices: 75885821--75885998 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
75885811 ATATTGAGCC
* *
75885821 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
75885848 CGCACGCTTAGTGCCACGTAATCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
75885875 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
75885903 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
75885930 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
75885957 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
75885984 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
75885999 GTACAATTTA
Statistics
Matches: 122, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 96 0.79
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:75885981 original size:54 final size:55
Alignment explanation
Indices: 75885821--75885998 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 55
75885811 ATATTGAGCC
* * * * * * * * *
75885821 CGCACACTCAGTGCTATATAATCA-ACTCGCACGCTTAGTGCCACGTAATCGAAT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* ** * *
75885875 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* **
75885930 CGCACACTTAGTGC-ATCATATTCA-TTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
*
75885984 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
75885999 GTACAATTTA
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
54 58 0.57
55 44 0.43
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
Found at i:75897060 original size:27 final size:27
Alignment explanation
Indices: 75897030--75897207 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
75897020 ATATTGAGCC
* *
75897030 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
75897057 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
75897084 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
75897112 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
75897139 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
75897166 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
75897193 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
75897208 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:75897169 original size:82 final size:81
Alignment explanation
Indices: 75897051--75897206 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
75897041 TGCTATATAA
* * * *
75897051 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
75897116 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75897133 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
75897197 CCCTTAGTGC
65 CACTTAGTGC
75897207 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75906505 original size:20 final size:20
Alignment explanation
Indices: 75906464--75906537 Score: 100
Period size: 20 Copynumber: 3.8 Consensus size: 20
75906454 ATACGTGGGA
75906464 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
*
75906481 ATATGATATGCACATGGTATG
1 -TATGATATGCACATGATATG
75906502 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
75906522 TATGAAATGCACATGA
1 TATGATATGCACATGA
75906538 CGTAATCATA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 40 0.80
21 2 0.04
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:75906629 original size:26 final size:26
Alignment explanation
Indices: 75906588--75906747 Score: 242
Period size: 26 Copynumber: 6.3 Consensus size: 26
75906578 GAGGAAGTGC
*
75906588 AAAAAGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75906613 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75906639 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75906665 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
75906691 AAAAGGGCTT-TGCCTCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
75906715 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
75906738 AAAAGAGGCT
1 AAAAG-GGCT
75906748 AGGCCTCCAG
Statistics
Matches: 128, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 8 0.06
24 23 0.18
25 18 0.14
26 79 0.62
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:75908702 original size:17 final size:18
Alignment explanation
Indices: 75908653--75908702 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
75908643 GCCTGTAAAA
75908653 GCCCGATAAATGA-AAGT
1 GCCCGATAAATGATAAGT
* * *
75908670 GCTCGATCAATTATAA-T
1 GCCCGATAAATGATAAGT
75908687 GCCCGATAAATGATAA
1 GCCCGATAAATGATAA
75908703 AAATGTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 24 0.92
18 2 0.08
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (18 bp):
GCCCGATAAATGATAAGT
Found at i:75910724 original size:43 final size:43
Alignment explanation
Indices: 75910676--75910761 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
75910666 TAATTGAGTA
*
75910676 TATTACAGTAATCTCTTCTGGGTACTCTATAAGTCCTGTTATT
1 TATTACAATAATCTCTTCTGGGTACTCTATAAGTCCTGTTATT
75910719 TATTACAATAATCTCTTCTGGGTACTCTATAAGTCCTGTTATT
1 TATTACAATAATCTCTTCTGGGTACTCTATAAGTCCTGTTATT
75910762 CTCAGAGGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (43 bp):
TATTACAATAATCTCTTCTGGGTACTCTATAAGTCCTGTTATT
Found at i:75912583 original size:40 final size:40
Alignment explanation
Indices: 75912480--75912733 Score: 331
Period size: 40 Copynumber: 6.4 Consensus size: 40
75912470 GATGATAACT
* * *
75912480 GGGCTAAGTCCCGAAGGCATCTGTGCAAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
* * *
75912520 GGGCTAAG-CCCGAAGGCAATTATGCGAGTTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
75912559 GGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
75912599 GGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATATCC
*
75912639 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
75912679 GGGCTAAGTCTCGAAGGCATTTGAGC-AG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
**
75912718 -GGCTAAACCCCGAAGG
1 GGGCTAAGTCCCGAAGG
75912734 TACTTGGTTG
Statistics
Matches: 193, Mismatches: 16, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
38 15 0.08
39 42 0.22
40 134 0.69
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:75914402 original size:9 final size:9
Alignment explanation
Indices: 75914388--75914415 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
75914378 GATTTTGGGT
75914388 TAATTTGAA
1 TAATTTGAA
75914397 TAATTTGAA
1 TAATTTGAA
75914406 TAATTTGAA
1 TAATTTGAA
75914415 T
1 T
75914416 CCTATTTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (9 bp):
TAATTTGAA
Found at i:75917026 original size:93 final size:93
Alignment explanation
Indices: 75916918--75917089 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75916908 GCCCATAAGT
* *
75916918 GAACTCGAACTCAACTCAACAAGCTCGGGCATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75916983 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
75917011 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
75917076 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
75917090 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:75917085 original size:46 final size:46
Alignment explanation
Indices: 75916910--75917085 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
75916900 TGTAACCCGC
* * * *
75916910 CCATAAGTGAACTCGAACTCAACTCAACAAGCTCGGGCATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
75916956 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
75917002 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
75917049 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
75917086 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:75917104 original size:46 final size:44
Alignment explanation
Indices: 75916961--75917104 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
75916951 TGCATCCATA
* *
75916961 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
75917010 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
75917053 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
75917100 AGTGA
1 AGTGA
75917105 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 33 0.43
47 28 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:75924914 original size:46 final size:47
Alignment explanation
Indices: 75924864--75925134 Score: 190
Period size: 47 Copynumber: 5.8 Consensus size: 47
75924854 ATTCGTGTAT
*
75924864 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGACA-TATGA
* * *
75924910 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-A-TTAAGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGACATATGA
* * * * * *
75924955 CGAGGGCTAGTGTAAGA-CATGTCTGAGAGATGCGTCAGCGTCGAGACAT-A
1 -GA--GCTAGTGTAAGACCATGTCTGGGACATG-G-CATCGGCGACATATGA
* * *
75925005 -AGCTAGTGTAAGA-CATG-CATGGGACAT-GCATTGGCTACGAGATGA
1 GAGCTAGTGTAAGACCATGTC-TGGGACATGGCATCGGCGAC-ATATGA
* * * *
75925050 TAG-TCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATAT--
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC--GACATATGA
*
75925097 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
75925135 ACCTTCCCTA
Statistics
Matches: 176, Mismatches: 29, Indels: 39
0.72 0.12 0.16
Matches are distributed among these distances:
43 5 0.03
44 4 0.02
45 7 0.04
46 49 0.28
47 72 0.41
48 28 0.16
49 7 0.04
50 3 0.02
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGACATATGA
Found at i:75925117 original size:140 final size:140
Alignment explanation
Indices: 75924865--75925118 Score: 340
Period size: 140 Copynumber: 1.8 Consensus size: 140
75924855 TTCGTGTATG
*
75924865 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGT
*
75924930 CTGGGACATGGCATCAGCATTAAGACGAGGGCTAGTGTAAGACATGTCTGAGAGATGCGTCAGCG
66 CTGGGACATGGCATCAGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGAGAGATGCGTCAGCG
75924995 TCGAGACATA
131 TCGAGACATA
* * *
75925005 AGCTAGTGTAAGACATG-CATGGGACATGCATTGGCTACGA-GATGATAG-TCAGTGTAAGACCA
1 AGCTAGTGTAAGACATGTC-TGGGACATGCATCGGCCAC-ATGATGAGAGCT-AGTGTAAGACCA
* * *
75925067 TGTTTGGGACATGGCATC-G-ACTTGAGA-TATGAGCTAGTGTAAGACCATGTCT
63 TGTCTGGGACATGGCATCAGCA-TTAAGACGA-GAGCTAGTGTAAGA-CATGTCT
75925119 AGGACATGGC
Statistics
Matches: 100, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
138 2 0.02
139 21 0.21
140 76 0.76
141 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (140 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCAGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGAGAGATGCGTCAGCG
TCGAGACATA
Found at i:75931003 original size:40 final size:40
Alignment explanation
Indices: 75930958--75931182 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 40
75930948 CTTGCACAAG
* * * * *
75930958 GCCTTCGGATCTTAGCTCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGATCTTAGCCCGGATATAGTCGCTAGCACAAAT
75930998 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTC-GGATCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
75931038 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGATCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * * *
75931078 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGTACGAAT
1 GCCTTCGGATCTTAGCCCGGATATAGTC-GCTAGCACAAAT
* * * * *
75931118 GCCTTCGAATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGATCTTAGCCCGGATATAGTC-GCTAGCACAAAT
*
75931159 GCCTTTGGGA-CTTAGCCCGGATAT
1 GCC-TTCGGATCTTAGCCCGGATAT
75931183 CATTCGAATA
Statistics
Matches: 153, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.02
40 119 0.78
41 27 0.18
42 4 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGATCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:75931059 original size:80 final size:80
Alignment explanation
Indices: 75930922--75931182 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
75930912 CTCAAGTAAT
* * * * * * * *
75930922 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGATCTTAGCTCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGT
*
75930985 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
75931000 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAG
*
75931064 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
75931080 CTTCGGGTCTTAGCCCGGATATAGCAACTCGTACGAATGCCTTCGAATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGT
*
75931145 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
*
75931161 CTTTGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
75931183 CATTCGAATA
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.11
80 90 0.60
81 32 0.21
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:75936643 original size:44 final size:47
Alignment explanation
Indices: 75936589--75936712 Score: 148
Period size: 44 Copynumber: 2.7 Consensus size: 47
75936579 TATGCATGCT
75936589 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-GA-CC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTCGAGCC
* * * * *
75936633 GATGCGTGTCCCAGACACGTCTTACACTGGC-TATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTCGA-GCC
* *
75936680 GATGCATGTCCTAGACATGTCTTACTCTAGCAC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC
75936713 TCATCTCTAT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
43 5 0.08
44 29 0.45
45 2 0.03
47 28 0.44
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTCGAGCC
Found at i:75936696 original size:47 final size:44
Alignment explanation
Indices: 75936589--75936848 Score: 150
Period size: 47 Copynumber: 5.6 Consensus size: 44
75936579 TATGCATGCT
75936589 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTGACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTGACC
* * * * *
75936633 GATGCGTGTCCCAGACACGTCTTACACTGGC-TATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-GA--CC
* * * *
75936680 GATGCATGTCCTAGACATGTCTTACTCTAGCACTCATCTCTATG-CT
1 GATGCATGTCCCAGACATGTCTTACACTAGCA--CAACTCT-TGACC
* * * * * * *
75936726 GATGTCATGTCCTAGA-ATGGTCTTACACTGGCTCTTATAAT-ATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCAC--A-ACTCTTGACC
* * *** *
75936773 GATGCATGTCCCTGACATGTCTTACACTAGCCCTTGTCTGGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTGA--CC
75936819 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATG-CATGTCCCAGACAT-GTCTTACACT
75936849 GGCGCACAAA
Statistics
Matches: 166, Mismatches: 31, Indels: 34
0.72 0.13 0.15
Matches are distributed among these distances:
43 6 0.04
44 30 0.18
45 3 0.02
46 36 0.22
47 72 0.43
48 11 0.07
49 1 0.01
50 7 0.04
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTGACC
Found at i:75936794 original size:93 final size:93
Alignment explanation
Indices: 75936538--75936851 Score: 302
Period size: 93 Copynumber: 3.4 Consensus size: 93
75936528 GATAAATTGT
* * * * *
75936538 CGATGTCGTGTCCTAGACATAGTCTTACACTGGCTCTCATATATGCATGCTGATGCATGTCCCAG
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATG---GCTGATGCATGTCCCTG
*
75936603 ACATGTCTTACACTAGCA--CAACTCT-TGAC
63 ACATGTCTTACACTAGCACTCATCTCTATG-C
* * * ** *
75936632 CGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCTCTGTCGA-GGCCGATGCATGT-CCTA
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGC--TCT-TATATATGGCTGATGCATGTCCCT-
*
75936693 GACATGTCTTACTCTAGCACTCATCTCTATGC
62 GACATGTCTTACACTAGCACTCATCTCTATGC
* *
75936725 TGATGTCATGTCCTAGA-ATGGTCTTACACTGGCTCTTATAATATGGCTGATGCATGTCCCTGAC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTTAT-ATATGGCTGATGCATGTCCCTGAC
* ** **
75936789 ATGTCTTACACTAGCCCTTGTCTGGATGC
65 ATGTCTTACACTAGCACTCATCTCTATGC
*
75936818 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGC
75936852 GCACAAATCA
Statistics
Matches: 180, Mismatches: 27, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
90 2 0.01
91 31 0.17
92 17 0.09
93 76 0.42
94 52 0.29
95 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.30
Consensus pattern (93 bp):
CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATGGCTGATGCATGTCCCTGACA
TGTCTTACACTAGCACTCATCTCTATGC
Found at i:75942478 original size:40 final size:40
Alignment explanation
Indices: 75942423--75942546 Score: 187
Period size: 40 Copynumber: 3.1 Consensus size: 40
75942413 CGGATGATAA
*
75942423 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
75942463 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
75942503 CTGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
75942543 CCGG
1 CCGG
75942547 TTAAAGCCCA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
40 75 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:75947620 original size:44 final size:46
Alignment explanation
Indices: 75947563--75947732 Score: 143
Period size: 47 Copynumber: 3.7 Consensus size: 46
75947553 ATATATGCGT
*
75947563 GCTGATGCATGTCCTAGACATGTCTTACACTAGCACAACTCT-T-G
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTAG
* * * * * * *
75947607 GCTGATGCGTGTCCCAAACACGTCTTGCACTGGC-TATCTCTGTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGT--AG
* *
75947654 GCTGATGCATGTCCCAGACATGTCTTACTCTAGCACTCATCTCTGTA-
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCA--CAACTCTGTAG
* *
75947701 -CCGATGTCATGTTCCAGACATGGTCTTACACT
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACT
75947733 GGCTCTCATA
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 5 0.05
44 29 0.29
46 5 0.05
47 42 0.42
48 10 0.10
50 8 0.08
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTGTAG
Found at i:75947772 original size:94 final size:94
Alignment explanation
Indices: 75947656--75947829 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 94
75947646 CTGTCGAGGC
* * * *
75947656 TGATGCATGTCCCAGACATGTCTTACTCTAGCACTCATCTCTG-TACCGATGT-CATGTTCCAGA
1 TGATGCATATCCCAGACATGTCTTACACTAGCACTCATCT-GGATACCGAT-TCCATGTCCCAGA
75947719 CATGGTCTTACACTGGCTCTCATAATATGGT
64 CATGGTCTTACACTGGCTCTCATAATATGGT
* * * * *
75947750 TGATGCATATCTCAGACATGTCTTACAGTAGCCCTCGTCTGGATGCCGATTCCATGTCCCAGACA
1 TGATGCATATCCCAGACATGTCTTACACTAGCACTCATCTGGATACCGATTCCATGTCCCAGACA
75947815 TGGTCTTACACTGGC
66 TGGTCTTACACTGGC
75947830 ACACAAATCA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
93 2 0.03
94 67 0.97
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (94 bp):
TGATGCATATCCCAGACATGTCTTACACTAGCACTCATCTGGATACCGATTCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATAATATGGT
Found at i:75950002 original size:29 final size:30
Alignment explanation
Indices: 75949969--75950045 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 30
75949959 GTTGTGAGAT
* *
75949969 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAACTTGAAAGTACA
* * *
75949998 TGGCATTAAGTGTGCG-AGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAACTTGAAAGTACA
*
75950027 TGGCACTAAGTGTGTGAAC
1 TGGCACTAAGTGTGCGAAC
75950046 CCACTATATA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
28 6 0.16
29 31 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAACTTGAAAGTACA
Found at i:75953121 original size:55 final size:55
Alignment explanation
Indices: 75953056--75953193 Score: 168
Period size: 55 Copynumber: 2.5 Consensus size: 55
75953046 TATGTAGGCC
* * **
75953056 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTTCTTGTCACGGGCGTGCCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTTCTAGGCACCAGCGTGCCG
** * * * * *
75953111 CACGCCCGTGTTAATTTGACAAGTTCGGCCATGGTTTCTAGGCACCAGCGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTTCTAGGCACCAGCGTGCCG
*
75953166 CACGCCCATGTTGTTTTGGCAGGTTCGC
1 CACGCCCGTGTTGTTTTGGCAGGTTCGC
75953194 ATGGCTGTGA
Statistics
Matches: 66, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.12, C:0.29, G:0.30, T:0.29
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTTCTAGGCACCAGCGTGCCG
Found at i:75956824 original size:40 final size:40
Alignment explanation
Indices: 75956769--75957036 Score: 446
Period size: 40 Copynumber: 6.7 Consensus size: 40
75956759 GAGCATTGGA
75956769 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
75956809 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
75956849 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
** *
75956889 ATATATCCGGGCTAAGACCCGAAGGTGATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
75956929 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
75956969 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
75957009 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
75957037 AGGTGTTTGC
Statistics
Matches: 211, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 211 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:75964068 original size:40 final size:40
Alignment explanation
Indices: 75964013--75964280 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
75964003 GAGCATTGGA
75964013 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
75964053 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
75964093 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
75964133 ATATATCCGGGCTAAGACCCGAAGGCGATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
75964173 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
75964213 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
75964253 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
75964281 AGGTGTTTGC
Statistics
Matches: 213, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:75971476 original size:28 final size:27
Alignment explanation
Indices: 75971426--75971482 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 27
75971416 CATACGGGCT
*
75971426 AGGACACGGGTGTGCCAGGGCCGTGTGA
1 AGGACACGGGTGTGCCA-GGCCGTATGA
75971454 AGGACACGAGTGTGTGCCA-GCCGTATGA
1 AGGACACG-G-GTGTGCCAGGCCGTATGA
75971482 A
1 A
75971483 AACCGCTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 17 0.65
29 1 0.04
30 8 0.31
ACGTcount: A:0.23, C:0.21, G:0.40, T:0.16
Consensus pattern (27 bp):
AGGACACGGGTGTGCCAGGCCGTATGA
Found at i:75971821 original size:43 final size:43
Alignment explanation
Indices: 75971756--75971843 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 43
75971746 TGATGATTTA
75971756 AGAAAGTTTTAAAATTTTCAAGTCATGAAGCCTCAGAATTTGT
1 AGAAAGTTTTAAAATTTTCAAGTCATGAAGCCTCAGAATTTGT
75971799 AGAAAGTTTT-AAATTTTCCAAGTCATGAAGCCTCAGAATTTGT
1 AGAAAGTTTTAAAATTTT-CAAGTCATGAAGCCTCAGAATTTGT
75971842 AG
1 AG
75971844 TAAACAGGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 7 0.16
43 37 0.84
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.34
Consensus pattern (43 bp):
AGAAAGTTTTAAAATTTTCAAGTCATGAAGCCTCAGAATTTGT
Found at i:75972638 original size:17 final size:17
Alignment explanation
Indices: 75972618--75972666 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
75972608 CTCGAAAAAT
75972618 CCCGATAAATGA-AAGTG
1 CCCGATAAATGATAA-TG
* *
75972635 CCCGATCAATTATAATG
1 CCCGATAAATGATAATG
75972652 CCCGATAAATGATAA
1 CCCGATAAATGATAA
75972667 AAATGTTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.22
Consensus pattern (17 bp):
CCCGATAAATGATAATG
Found at i:75976201 original size:21 final size:21
Alignment explanation
Indices: 75976175--75976219 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
75976165 TAATCGACGA
75976175 AATGACCATCATACCCCTAGT
1 AATGACCATCATACCCCTAGT
75976196 AATGACCATCATACCCCTAGT
1 AATGACCATCATACCCCTAGT
75976217 AAT
1 AAT
75976220 AGGTTAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.31, G:0.09, T:0.24
Consensus pattern (21 bp):
AATGACCATCATACCCCTAGT
Found at i:75992199 original size:95 final size:95
Alignment explanation
Indices: 75992014--75992192 Score: 340
Period size: 95 Copynumber: 1.9 Consensus size: 95
75992004 AATGTGTGGA
*
75992014 TTTGATAATAGAGGAATTAGAGAAGAGAAAGATCACTAATGCATACTCTCTTGCTTATCAGGTAC
1 TTTGATAATAGAGGAATTAGAGAAGAGAAAGATCACTAATGCATACACTCTTGCTTATCAGGTAC
75992079 TTATATTTGGAATATTACTCTAGACTAATC
66 TTATATTTGGAATATTACTCTAGACTAATC
*
75992109 TTTGATAATAGAGGAATTAGAGAAGAGAAAGATCACTAATGCATACACTCTTGCTTATCGGGTAC
1 TTTGATAATAGAGGAATTAGAGAAGAGAAAGATCACTAATGCATACACTCTTGCTTATCAGGTAC
75992174 TTATATTTGGAATATTACT
66 TTATATTTGGAATATTACT
75992193 TCAGACTCAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 82 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.34
Consensus pattern (95 bp):
TTTGATAATAGAGGAATTAGAGAAGAGAAAGATCACTAATGCATACACTCTTGCTTATCAGGTAC
TTATATTTGGAATATTACTCTAGACTAATC
Found at i:75997994 original size:44 final size:44
Alignment explanation
Indices: 75997931--75998018 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
75997921 CATATATGTT
*
75997931 TATTTATTTAACGAACTTGAATTATGAGAGCACAAACTGAATTA
1 TATTTATTTAACGAACTTGAATTATGAGAGCACAAACCGAATTA
*
75997975 TATTTATTTAATGAACTTGAATTATGAGAGCACAAACCGAATTA
1 TATTTATTTAACGAACTTGAATTATGAGAGCACAAACCGAATTA
75998019 GCTATTCATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (44 bp):
TATTTATTTAACGAACTTGAATTATGAGAGCACAAACCGAATTA
Found at i:75998036 original size:44 final size:44
Alignment explanation
Indices: 75997944--75998036 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
75997934 TTATTTAACG
* * * *
75997944 AACTTGAATTATGAGAGCACAAACTGAATTATATTTATTTAATG
1 AACTTGAATTATGAGAGCACAAACCGAATTATATTCATTCAATC
75997988 AACTTGAATTATGAGAGCACAAACCGAATTAGCTATTCA-TCAA-C
1 AACTTGAATTATGAGAGCACAAACCGAATTA--TATTCATTCAATC
75998032 AACTT
1 AACTT
75998037 TACGTTTTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
44 35 0.81
45 3 0.07
46 5 0.12
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (44 bp):
AACTTGAATTATGAGAGCACAAACCGAATTATATTCATTCAATC
Found at i:76001619 original size:32 final size:32
Alignment explanation
Indices: 76001583--76001644 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
76001573 AAAGCAAAAG
76001583 CCTTAGTTTCTCCA-AATTTGATCTCAAACTGT
1 CCTTAGTTTCT-CAGAATTTGATCTCAAACTGT
*
76001615 CCTTAGTTTCTCAGAATTTGATCTTAAACT
1 CCTTAGTTTCTCAGAATTTGATCTCAAACT
76001645 ATCATACCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 2 0.07
32 26 0.93
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.42
Consensus pattern (32 bp):
CCTTAGTTTCTCAGAATTTGATCTCAAACTGT
Done.