Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 231 of 356
Found at i:76002126 original size:129 final size:128
Alignment explanation
Indices: 76001897--76002150 Score: 393
Period size: 129 Copynumber: 2.0 Consensus size: 128
76001887 TGTTTTGCCC
* **
76001897 CGTTTGTTAATATAAGACATTATCATTATATTTCAGTTTCTTTTTTGGGTACATAAATAAACTAT
1 CGTTTGTTAATATAAGACATTATCATTATATTTCAGTTTCTTTTCTGAATACATAAATAAACTAT
* *
76001962 TTTATAATAATATCTTGAGAATAATATAATTATTCTTAAAAGGCCCTTAGTCGAGTATTACCT
66 TTTATAATAATATCCTGAGAATAATATAATTATTCTTAAAAGGCCCTTAGTAGAGTATTACCT
* *
76002025 CGTTTGTTAATATAA-AGCATTATCATTATTATTTCAGTTTCTTTTCTGAATATATAAATAAATT
1 CGTTTGTTAATATAAGA-CATTATCATTA-TATTTCAGTTTCTTTTCTGAATACATAAATAAACT
* * *
76002089 ATTTTATAATAATGTCCTGAGAATAATATGATTATTCTTAAAAGGTCCTTAGTAGAGTATTA
64 ATTTTATAATAATATCCTGAGAATAATATAATTATTCTTAAAAGGCCCTTAGTAGAGTATTA
76002151 TTATGGGCTT
Statistics
Matches: 114, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
127 1 0.01
128 26 0.23
129 87 0.76
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (128 bp):
CGTTTGTTAATATAAGACATTATCATTATATTTCAGTTTCTTTTCTGAATACATAAATAAACTAT
TTTATAATAATATCCTGAGAATAATATAATTATTCTTAAAAGGCCCTTAGTAGAGTATTACCT
Found at i:76010964 original size:20 final size:20
Alignment explanation
Indices: 76010939--76010976 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
76010929 TTAGTCACGA
76010939 TTTTACTTAATCAAACATGG
1 TTTTACTTAATCAAACATGG
76010959 TTTTACTTAATCAAACAT
1 TTTTACTTAATCAAACAT
76010977 CTTACTAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (20 bp):
TTTTACTTAATCAAACATGG
Found at i:76014919 original size:27 final size:27
Alignment explanation
Indices: 76014889--76015066 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
76014879 ATATTGAGTC
* *
76014889 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
76014916 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
76014943 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
76014971 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
76014998 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
76015025 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
76015052 CGCACACCTAGTGCT
1 CGCACACTTAGTGCT
76015067 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:76015028 original size:82 final size:81
Alignment explanation
Indices: 76014910--76015065 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
76014900 TGCTATATAA
* *
76014910 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
*
76014975 CACTTAGTGCCGCATGG
65 CACCTAGTGCCGCATGG
* * **
76014992 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76015056 CACCTAGTGC
65 CACCTAGTGC
76015066 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACCTAGTGCCGCATGG
Found at i:76015049 original size:54 final size:54
Alignment explanation
Indices: 76014889--76015065 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
76014879 ATATTGAGTC
* * * *
76014889 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
76014943 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
76014998 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
76015052 CGCACACCTAGTGC
1 CGCACACTTAGTGC
76015066 TGTACAATTT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
54 56 0.54
55 45 0.44
56 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:76025204 original size:17 final size:17
Alignment explanation
Indices: 76025182--76025216 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
76025172 TTACATGCCT
76025182 TCATTTGGCAAATCAAA
1 TCATTTGGCAAATCAAA
76025199 TCATTTGGCAAATCAAA
1 TCATTTGGCAAATCAAA
76025216 T
1 T
76025217 GACACATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (17 bp):
TCATTTGGCAAATCAAA
Found at i:76038675 original size:49 final size:48
Alignment explanation
Indices: 76038487--76038903 Score: 668
Period size: 47 Copynumber: 8.8 Consensus size: 48
76038477 TTAGGATTCT
* * *
76038487 ATGTGATGGATGTGAACA-TGCATAT-ATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATAATGTGATAAGGCCTAATGGCCG
76038534 ATGTGATGAATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCG
*
76038581 ATGTGATGAATGTGAAAGTGTATA-AATGTGATAAGGCCTAGTGGCCG
1 ATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCG
76038628 ATGTGATGAATGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATAT-AATGTGATAAGGCCTAATGGCCG
76038677 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCG
76038726 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCG
76038775 ATGTGATGAATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCG
* * *
76038822 ATGTGATGGATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCG
* *
76038869 ACGTGATGGATGTGAAAGTGTATA-AATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATAATGTGATAAG
76038904 TCCCGAAGGG
Statistics
Matches: 355, Mismatches: 9, Indels: 12
0.94 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 210 0.59
48 1 0.00
49 143 0.40
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (48 bp):
ATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCG
Found at i:76039078 original size:37 final size:37
Alignment explanation
Indices: 76039022--76039100 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
76039012 CCGAGCTCTA
* * *
76039022 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* * *
76039059 AAGATCCGATAACTTCGTGTGGAGATTATGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76039096 AAGAC
1 AAGAC
76039101 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76040640 original size:40 final size:40
Alignment explanation
Indices: 76040317--76040628 Score: 525
Period size: 40 Copynumber: 7.8 Consensus size: 40
76040307 GAGAATTGAG
76040317 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
76040357 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76040397 AGTGATATATCCGGGCCAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76040437 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76040477 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76040517 AGTGATATATCCGGGCTAAGTCCCGATGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
76040557 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
76040597 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
76040629 ATCATGCTGG
Statistics
Matches: 255, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 255 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:76042993 original size:25 final size:25
Alignment explanation
Indices: 76042965--76043043 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
76042955 CTAATGGCCG
76042965 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
76042990 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
76043012 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
76043037 ATGTGAT
1 ATGTGAT
76043044 AAGGCCTAGT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:76043106 original size:49 final size:47
Alignment explanation
Indices: 76042918--76043427 Score: 844
Period size: 47 Copynumber: 10.7 Consensus size: 47
76042908 TTAGGATTCT
* * *
76042918 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
76042965 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
76043012 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76043059 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
76043108 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
76043157 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
76043204 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
76043253 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76043300 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
76043346 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
76043393 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
76043428 TCCGAAGGGC
Statistics
Matches: 445, Mismatches: 12, Indels: 12
0.95 0.03 0.03
Matches are distributed among these distances:
46 46 0.10
47 258 0.58
49 141 0.32
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:76043131 original size:96 final size:94
Alignment explanation
Indices: 76042918--76043427 Score: 844
Period size: 96 Copynumber: 5.4 Consensus size: 94
76042908 TTAGGATTCT
* * *
76042918 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
76042982 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
*
76043012 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
76043077 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
76043108 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76043173 AGTGTATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
*
76043204 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76043269 AGTGTATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
*
76043300 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
76043364 TGTATATATGTGATAAGGCCTAATAGCCA
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * *
76043393 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
76043428 TCCGAAGGGC
Statistics
Matches: 398, Mismatches: 13, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
93 86 0.22
94 77 0.19
96 189 0.47
98 46 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:76043601 original size:37 final size:37
Alignment explanation
Indices: 76043545--76043623 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
76043535 CCGAGCTCTA
* * *
76043545 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
76043582 AAGATCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76043619 AAGAC
1 AAGAC
76043624 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76053791 original size:20 final size:20
Alignment explanation
Indices: 76053766--76053806 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
76053756 GACAGAGCAT
*
76053766 TATGTTCGTGGAAAGCAGAC
1 TATGTTCATGGAAAGCAGAC
*
76053786 TATGTTCATGGAAAGTAGAC
1 TATGTTCATGGAAAGCAGAC
76053806 T
1 T
76053807 CAAGTCAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (20 bp):
TATGTTCATGGAAAGCAGAC
Found at i:76058468 original size:93 final size:93
Alignment explanation
Indices: 76058355--76058526 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
76058345 CGCCCATAAG
* * * *
76058355 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCT
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
76058420 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
76058448 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
76058513 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
76058527 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76058523 original size:46 final size:46
Alignment explanation
Indices: 76058348--76058523 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
76058338 TGTAACTCGC
* * * *
76058348 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
76058394 CCATAAGTGAACTCGGACTCAACTCTACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
*
76058444 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
76058487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
76058524 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:76064465 original size:85 final size:85
Alignment explanation
Indices: 76064248--76064492 Score: 318
Period size: 85 Copynumber: 2.9 Consensus size: 85
76064238 TATGTCTTTG
* * ** * *
76064248 TTTGGAAACAAAACAATATTGAATAAAATCTTGTTAAACGGC-AGGAATAAATCCCGAAACAAAT
1 TTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGGCGA-GAATAAATCTCGAAATAAAT
76064312 TTTATTTAATTTAGTTCGAAT
65 TTTATTTAATTTAGTTCGAAT
* * * *
76064333 TTT-GAAACAAAATAAAATCAAATAAAATATTATTAAACGGCGGGAATAAATCTCGAAATAGATT
1 TTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGGCGAGAATAAATCTCGAAATAAATT
* *
76064397 TTATTTAATTTAATTTTG-AT
66 TTATTTAATTT-AGTTCGAAT
*
76064417 TTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGGCGAGAATAAAT-TCTGAAATATAT
1 TTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGGCGAGAATAAATCTC-GAAATAAAT
76064481 TTTATTTAATTT
65 TTTATTTAATTT
76064493 CTCGTTTTTT
Statistics
Matches: 140, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
84 68 0.49
85 72 0.51
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.34
Consensus pattern (85 bp):
TTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACGGCGAGAATAAATCTCGAAATAAATT
TTATTTAATTTAGTTCGAAT
Found at i:76064939 original size:77 final size:79
Alignment explanation
Indices: 76064526--76064959 Score: 481
Period size: 78 Copynumber: 5.5 Consensus size: 79
76064516 AATAAATCCA
* * * * *
76064526 TTGAACGACAGTA-AATAAATCCCGAAACGGATTTTATGTTACTCGTTTTTGGAAATAAAACAAA
1 TTGAACGGCAG-AGAATCAATCCCGAAACGAATTTTATTTTACTCGTTTTTAGAAATAAAACAAA
*
76064590 TTTTGAATAAAATCG
65 TTTGGAATAAAATCG
* * * * * * * *
76064605 TTGAACAGC-GAAAATCAATCCCGAAATGATTTTTTTATTTTTCTCATGTTTGGAAATAAAACAA
1 TTGAACGGCAGAGAATCAATCCCGAAACGA--ATTTTATTTTACTCGTTTTTAGAAATAAAACAA
76064669 ATTTGGAATAAAATCG
64 ATTTGGAATAAAATCG
* * * *
76064685 TTGAACGG-TGAGAATCAATCCCGAAACGATTTTTTATTTTACTCGTTTTGA-AAATTAAACAAA
1 TTGAACGGCAGAGAATCAATCCCGAAACGA-ATTTTATTTTACTCGTTTTTAGAAATAAAACAAA
*
76064748 TTTGGAATAAAATCA
65 TTTGGAATAAAATCG
* * *
76064763 TTGAACGGCAG-GAGTCAATCCCGAAAC-TATTTTATTTTACTCGTTTTTTGGAAATAAAACAAA
1 TTGAACGGCAGAGAATCAATCCCGAAACGAATTTTATTTTACTCG-TTTTTAGAAATAAAACAAA
*
76064826 TTTGGAATAAAACCG
65 TTTGGAATAAAATCG
* * * *
76064841 TTGAACGGC-GAGAATCGATCCCGAAAC-AAATTTATTTTACTTGTTTTTAGAAATAAAACAATT
1 TTGAACGGCAGAGAATCAATCCCGAAACGAATTTTATTTTACTCGTTTTTAGAAATAAAACAAAT
76064904 TTGGAATAAAATCG
66 TTGGAATAAAATCG
* * * *
76064918 TTAAATGGCAG-GAACCAATCCCGAAACGATTTTTATTTTACT
1 TTGAACGGCAGAGAATCAATCCCGAAACGAATTTTATTTTACT
76064960 TTTAATTTTC
Statistics
Matches: 301, Mismatches: 44, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
76 14 0.05
77 58 0.19
78 136 0.45
79 25 0.08
80 68 0.23
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (79 bp):
TTGAACGGCAGAGAATCAATCCCGAAACGAATTTTATTTTACTCGTTTTTAGAAATAAAACAAAT
TTGGAATAAAATCG
Found at i:76066399 original size:33 final size:33
Alignment explanation
Indices: 76066355--76066436 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
76066345 GATGAAAAAT
* * *
76066355 AATATTTAAATAATTTAATATACTAATACATGA
1 AATATTAAAATAATTTAATATAATAATACATAA
* * *
76066388 AATATTCAAATAATTTAATATAATGATATATAA
1 AATATTAAAATAATTTAATATAATAATACATAA
76066421 AATA-TAAAATAATTTA
1 AATATTAAAATAATTTA
76066437 TTTTTATTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 11 0.26
33 32 0.74
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (33 bp):
AATATTAAAATAATTTAATATAATAATACATAA
Found at i:76067012 original size:30 final size:31
Alignment explanation
Indices: 76066957--76067019 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 31
76066947 ATTAATTACT
76066957 TAAAAAATATTTAAAATTTACATTTC-ATATA
1 TAAAAAATATTTAAAATTTA-ATTTCAATATA
76066988 TAAAAAATA-TTAATAATGTT-ATTTCAATATA
1 TAAAAAATATTTAA-AAT-TTAATTTCAATATA
76067019 T
1 T
76067020 TTTATTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
30 9 0.31
31 18 0.62
32 2 0.07
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (31 bp):
TAAAAAATATTTAAAATTTAATTTCAATATA
Found at i:76069253 original size:14 final size:14
Alignment explanation
Indices: 76069234--76069261 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76069224 ATAAAATTTT
76069234 TCAAAAATTCAAGA
1 TCAAAAATTCAAGA
76069248 TCAAAAATTCAAGA
1 TCAAAAATTCAAGA
76069262 AAAAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.21
Consensus pattern (14 bp):
TCAAAAATTCAAGA
Found at i:76072076 original size:2 final size:2
Alignment explanation
Indices: 76072069--76072095 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76072059 AAGACTACAC
76072069 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
76072096 ATCATTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76081465 original size:49 final size:49
Alignment explanation
Indices: 76081409--76081906 Score: 873
Period size: 49 Copynumber: 10.3 Consensus size: 49
76081399 TATTTGAATA
* *
76081409 AATGTGAAAGTGTATATATATGTGATAAGTCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081458 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081507 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081554 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081603 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081652 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081699 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081748 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
76081797 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
76081844 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
76081893 AATGTGAAAGTGTA
1 AATGTGAAAGTGTA
76081907 CGAATGGCCA
Statistics
Matches: 433, Mismatches: 10, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
47 136 0.31
49 297 0.69
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:76081542 original size:96 final size:96
Alignment explanation
Indices: 76081409--76082190 Score: 988
Period size: 96 Copynumber: 8.3 Consensus size: 96
76081399 TATTTGAATA
*
76081409 AATGTGAAAGTGTATATATATGTGATAAGTCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
76081474 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
76081507 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
76081572 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCGATGTGATG
76081603 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
76081666 TATATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
76081699 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
76081764 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081797 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76081862 TATGTGATAAGGCCGAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCGATGTGATG
* * * * * *
76081893 AATGTGAAAGTG----TA--CGA-ATGGCC-AAT-G-TGATGAATG-TGAAAGTGTATA-TATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG--TGATGAATGTG-AAAGTGTAT
* * * *
76081946 GTGATAAGGCCGA-ATGGCCG-AT----G-T-T-ATG
63 AT-AT-ATG-TGATAAGGCCGAATGGCCGATGTGATG
76081974 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* **
76082037 TATATGTGATAAGGCCTAATAACCGATGTGATG
64 TATATGTGATAAGGCCGAATGGCCGATGTGATG
76082070 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
76082133 TATGTGATAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCGAATGGCCGATGTGATG
* *
76082164 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
76082191 TCCCGAAGGG
Statistics
Matches: 608, Mismatches: 43, Indels: 70
0.84 0.06 0.10
Matches are distributed among these distances:
81 15 0.02
82 1 0.00
83 1 0.00
84 1 0.00
86 4 0.01
87 17 0.03
88 18 0.03
89 19 0.03
90 11 0.02
91 7 0.01
92 11 0.02
93 5 0.01
94 101 0.17
95 1 0.00
96 294 0.48
98 102 0.17
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:76081672 original size:145 final size:145
Alignment explanation
Indices: 76081409--76081906 Score: 951
Period size: 145 Copynumber: 3.4 Consensus size: 145
76081399 TATTTGAATA
* * *
76081409 AATGTGAAAGTGTATATATATGTGATAAGTCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
76081474 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
76081539 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
76081554 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
76081619 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
76081684 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
76081699 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
76081764 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
*
76081829 ATGGCCGATGTGATG
131 ATGGCCAATGTGATG
*
76081844 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
76081907 CGAATGGCCA
Statistics
Matches: 348, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 348 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTGATG
Found at i:76081912 original size:32 final size:32
Alignment explanation
Indices: 76081875--76081938 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
76081865 GTGATAAGGC
*
76081875 CGAATGGCCGATGTGATGAATGTGAAAGTGTA
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTA
76081907 CGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTA
76081939 TATATATGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.09, G:0.33, T:0.25
Consensus pattern (32 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:76081921 original size:81 final size:81
Alignment explanation
Indices: 76081826--76081987 Score: 306
Period size: 81 Copynumber: 2.0 Consensus size: 81
76081816 GTGATAAGGC
*
76081826 CGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGA
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGA
76081891 TGAATGTGAAAGTGTA
66 TGAATGTGAAAGTGTA
*
76081907 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTTA
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGA
76081972 TGAATGTGAAAGTGTA
66 TGAATGTGAAAGTGTA
76081988 TATATATGTG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (81 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGA
TGAATGTGAAAGTGTA
Found at i:76081927 original size:177 final size:176
Alignment explanation
Indices: 76081730--76082083 Score: 620
Period size: 177 Copynumber: 2.0 Consensus size: 176
76081720 GTGATAAGGC
*
76081730 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGA
76081795 TGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 TGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--T
**
76081859 ATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
129 ATATATGTGATAAGGCCGAATAACCGATGTGATGAATGTGAAAGTGTA
*
76081907 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTTA
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGA
*
76081972 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
76082037 TATATGTGATAAGGCCTAATAACCGATGTGATGAATGTGAAAGTGTA
130 TATATGTGATAAGGCCGAATAACCGATGTGATGAATGTGAAAGTGTA
76082084 TATATGTGAT
Statistics
Matches: 169, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
177 123 0.73
179 46 0.27
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (176 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGA
TGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCGAATAACCGATGTGATGAATGTGAAAGTGTA
Found at i:76081962 original size:49 final size:47
Alignment explanation
Indices: 76081907--76082190 Score: 415
Period size: 47 Copynumber: 6.0 Consensus size: 47
76081897 TGAAAGTGTA
*
76081907 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 CGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
76081956 CGAATGGCCGATGTTATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 CGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
76082005 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* **
76082052 CTAATAACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* *
76082099 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGC
1 CGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* * * * *
76082146 CGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
76082191 TCCCGAAGGG
Statistics
Matches: 219, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 144 0.66
49 75 0.34
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
CGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
Found at i:76081975 original size:130 final size:129
Alignment explanation
Indices: 76081781--76082177 Score: 530
Period size: 130 Copynumber: 3.0 Consensus size: 129
76081771 GATAAGGCCT
*
76081781 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAA
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAA
76081846 TGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA-CG
66 TGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTAGCG
*
76081909 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTTATG
1 AATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76081974 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
64 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG----
*
76082039 TATGTG
125 TA-GCG
* *
76082045 ATAAGGCCTAATAACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 A-ATGGCC-----A---ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGA
* * * * *
76082110 TGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
57 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
76082173 GTGTA
122 GTGTA
76082178 TAAATGTGAT
Statistics
Matches: 239, Mismatches: 13, Indels: 25
0.86 0.05 0.09
Matches are distributed among these distances:
128 27 0.11
130 94 0.39
134 2 0.01
136 2 0.01
137 7 0.03
141 41 0.17
142 1 0.00
143 45 0.19
145 20 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (129 bp):
AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTAGCG
Found at i:76084516 original size:40 final size:40
Alignment explanation
Indices: 76084454--76084772 Score: 473
Period size: 40 Copynumber: 8.1 Consensus size: 40
76084444 AGGTCTCGAC
*
76084454 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
*
76084493 GATGTATCCGGGCTAAGTTCCGAAGAGCGTTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
*
76084533 GATGTATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
*
76084573 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
76084613 GATGTATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
*
76084652 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * ** *
76084692 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * * * * *
76084731 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
76084771 GA
1 GA
76084773 CGTGTATTCG
Statistics
Matches: 257, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 76 0.30
40 181 0.70
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
Found at i:76084680 original size:79 final size:79
Alignment explanation
Indices: 76084454--76084759 Score: 479
Period size: 79 Copynumber: 3.9 Consensus size: 79
76084444 AGGTCTCGAC
76084454 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
* *
76084518 AGCGTTCATGCTAGT
65 AGCATTCGTGCTAGT
*
76084533 GATGTATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
76084598 AGCATTCGTGCTAGT
65 AGCATTCGTGCTAGT
76084613 GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGA
1 GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGA
76084678 GCATTCGTGCTAGT
66 GCATTCGTGCTAGT
* * ** * * * * *
76084692 GATATATCCGTGCTAAACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAGGTCCCGAAGA
1 GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGA
76084757 GCA
66 GCA
76084760 ATCATGCTGG
Statistics
Matches: 212, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
79 124 0.58
80 87 0.41
81 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGA
GCATTCGTGCTAGT
Found at i:76084682 original size:119 final size:119
Alignment explanation
Indices: 76084454--76084772 Score: 489
Period size: 119 Copynumber: 2.7 Consensus size: 119
76084444 AGGTCTCGAC
*
76084454 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG-TCCGAAG
*
76084518 AGCGTTCATGCTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGT
65 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGT
*
76084573 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
* *
76084638 GCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
66 GCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGT
* * * * * *
76084692 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAGGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT-CCGAAG
* *
76084756 AGCAATCATGCTGGTGA
65 AGCATTCATGCTAGTGA
76084773 CGTGTATTCG
Statistics
Matches: 184, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
118 36 0.20
119 98 0.53
120 50 0.27
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
GCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGT
Found at i:76088259 original size:49 final size:49
Alignment explanation
Indices: 76088203--76088662 Score: 697
Period size: 49 Copynumber: 9.6 Consensus size: 49
76088193 TATTTGAATA
*
76088203 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
76088252 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76088301 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76088350 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
76088397 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
76088446 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * *
76088495 AATGTGAAAGTG--TATATATGTGATAATGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76088542 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * * *
76088589 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76088636 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
76088663 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 23, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
47 182 0.47
48 1 0.00
49 201 0.52
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:76088391 original size:145 final size:145
Alignment explanation
Indices: 76088203--76088662 Score: 730
Period size: 145 Copynumber: 3.2 Consensus size: 145
76088193 TATTTGAATA
76088203 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
76088268 TATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
76088333 TAATGGCCGATGTGATG
129 TAATGGCCGATGTGATG
76088350 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
76088415 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
*
76088480 ATGGTCGATGTGATG
131 ATGGCCGATGTGATG
* * * *
76088495 AATGTGAAAGTGTATATATGTGATAATGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
76088558 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGA
66 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * *
76088621 GTGGCCAACGTGATG
131 ATGGCCGATGTGATG
* *
76088636 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
76088663 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
141 52 0.18
143 46 0.16
145 185 0.63
147 12 0.04
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
ATGGCCGATGTGATG
Found at i:76097467 original size:27 final size:27
Alignment explanation
Indices: 76097429--76097483 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
76097419 TTTTCTAAAG
76097429 TTGGAATAAGGCATTCCAAACTTATTC
1 TTGGAATAAGGCATTCCAAACTTATTC
76097456 TTGGAATAAGGCATTCCAAACTTATTC
1 TTGGAATAAGGCATTCCAAACTTATTC
76097483 T
1 T
76097484 AACTCTATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (27 bp):
TTGGAATAAGGCATTCCAAACTTATTC
Found at i:76098559 original size:27 final size:27
Alignment explanation
Indices: 76098521--76098579 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
76098511 GCAACTCATG
* *
76098521 CAATCCATGTAATATTAATTTAACATT
1 CAATTCATGTAACATTAATTTAACATT
**
76098548 CAATTCATGTAACATTAATTTGCCATT
1 CAATTCATGTAACATTAATTTAACATT
76098575 CAATT
1 CAATT
76098580 TCACATGACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.41
Consensus pattern (27 bp):
CAATTCATGTAACATTAATTTAACATT
Found at i:76100780 original size:8 final size:8
Alignment explanation
Indices: 76100767--76100795 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
76100757 TGTTGATAGA
76100767 CTAAATCG
1 CTAAATCG
76100775 CTAAATCG
1 CTAAATCG
76100783 CTAAATCG
1 CTAAATCG
76100791 CTAAA
1 CTAAA
76100796 GTACCTGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.24
Consensus pattern (8 bp):
CTAAATCG
Found at i:76105109 original size:28 final size:28
Alignment explanation
Indices: 76105078--76105145 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
76105068 CACTGTATTA
*
76105078 GTGGCTTTGCCACGTAATTACTGCTTTG
1 GTGGCTTTGCCACGTAATTACTGCTCTG
76105106 GTGGCTTTGCCACGTAATTACTGCTCTG
1 GTGGCTTTGCCACGTAATTACTGCTCTG
*
76105134 GTGACTTTGCCA
1 GTGGCTTTGCCA
76105146 TGTTTACTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.15, C:0.24, G:0.25, T:0.37
Consensus pattern (28 bp):
GTGGCTTTGCCACGTAATTACTGCTCTG
Found at i:76105280 original size:21 final size:21
Alignment explanation
Indices: 76105239--76105280 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
76105229 AATCCCCATA
*
76105239 TGGTGTGTTGGTTGGTACGGG
1 TGGTGTGTTGGTTGATACGGG
76105260 TGGTGTGTTGGTTAGAT-CGGG
1 TGGTGTGTTGGTT-GATACGGG
76105281 GTGGGTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.07, C:0.05, G:0.50, T:0.38
Consensus pattern (21 bp):
TGGTGTGTTGGTTGATACGGG
Found at i:76108949 original size:22 final size:22
Alignment explanation
Indices: 76108924--76108972 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
76108914 CAAACACCCA
* *
76108924 TGTGAAGAGG-GGCACATGCCCG
1 TGTGAAG-GGAGGCACACGACCG
76108946 TGTGAAGGGAGGCACACGACCG
1 TGTGAAGGGAGGCACACGACCG
76108968 TGTGA
1 TGTGA
76108973 CTGAGGCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.24, C:0.20, G:0.41, T:0.14
Consensus pattern (22 bp):
TGTGAAGGGAGGCACACGACCG
Found at i:76108991 original size:21 final size:21
Alignment explanation
Indices: 76108934--76108991 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
76108924 TGTGAAGAGG
*
76108934 GGCACATGCCCGTGTGAAGGGA
1 GGCACATG-CCGTGTGAACGGA
* *
76108956 GGCACACGACCGTGTG-ACTGA
1 GGCACATG-CCGTGTGAACGGA
76108977 GGCACATGCCTGTGT
1 GGCACATGCC-GTGT
76108992 AGACCAGGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 2 0.07
21 14 0.47
22 14 0.47
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.17
Consensus pattern (21 bp):
GGCACATGCCGTGTGAACGGA
Found at i:76109642 original size:25 final size:26
Alignment explanation
Indices: 76109614--76109662 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
76109604 CAGGCAAACC
*
76109614 ATTTTGAAAAAGAAA-ATAAAGAAGA
1 ATTTTGAAAAAGAAAGAAAAAGAAGA
76109639 ATTTTGAAAAAGAAAGAAAAAGAA
1 ATTTTGAAAAAGAAAGAAAAAGAA
76109663 AACCAAGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.18
Consensus pattern (26 bp):
ATTTTGAAAAAGAAAGAAAAAGAAGA
Found at i:76115143 original size:11 final size:11
Alignment explanation
Indices: 76115079--76115145 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
76115069 TTAATATCTG
76115079 AAAATAATAAAT
1 AAAATAA-AAAT
*
76115091 AATAA-AATAAT
1 AA-AATAAAAAT
76115102 AAGAA-AAAAAT
1 AA-AATAAAAAT
*
76115113 AAAAT-AAACT
1 AAAATAAAAAT
*
76115123 AAAATGAAAAT
1 AAAATAAAAAT
76115134 AAAAATAAAAAT
1 -AAAATAAAAAT
76115146 TGGGTTGCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
10 11 0.24
11 18 0.40
12 14 0.31
13 2 0.04
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:76118137 original size:47 final size:47
Alignment explanation
Indices: 76118074--76118377 Score: 437
Period size: 47 Copynumber: 6.4 Consensus size: 47
76118064 CCCTTCGGGA
* * *
76118074 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
76118121 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
76118168 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
76118215 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
76118262 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
76118309 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
76118358 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
76118378 GTACATCAAT
Statistics
Matches: 238, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 193 0.81
49 45 0.19
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:76123400 original size:10 final size:10
Alignment explanation
Indices: 76123385--76123416 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
76123375 TAAATACATT
76123385 TAATTAAAGA
1 TAATTAAAGA
76123395 TAATTAAAGA
1 TAATTAAAGA
76123405 TAATTAAA-A
1 TAATTAAAGA
76123414 TAA
1 TAA
76123417 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:76123461 original size:15 final size:15
Alignment explanation
Indices: 76123441--76123470 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76123431 ATAATCCTAG
*
76123441 TAATTATCTTAATAT
1 TAATTATCCTAATAT
76123456 TAATTATCCTAATAT
1 TAATTATCCTAATAT
76123471 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:76126189 original size:51 final size:51
Alignment explanation
Indices: 76126134--76126275 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 51
76126124 ATGCTTTCCT
** *
76126134 GATAGCTTTGATCACCTGTGTGGTACTAGGTGCAGGCCACTATGTGTAA-AA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTG-AAGAA
* * * * *
76126185 GATAGCCTTGGTCACAAGTGTGGTACTATGTGAAGGCCGCTTTGTGAAGAA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTGAAGAA
* *
76126236 GGTAGCTTTGA-CTACAAGGGTGGTACTATGTGCAGGCCAC
1 GATAGCTTTGATC-ACAAGTGTGGTACTATGTGCAGGCCAC
76126276 CGGGCATCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
50 3 0.04
51 72 0.96
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (51 bp):
GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTGAAGAA
Found at i:76128923 original size:21 final size:22
Alignment explanation
Indices: 76128899--76128945 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
76128889 ATATTTTTGG
76128899 GATTAAATTGA-AT-AATTTGAT
1 GATTAAA-TGAGATAAATTTGAT
*
76128920 GATTGAATGAGATAAATTTGAT
1 GATTAAATGAGATAAATTTGAT
76128942 -ATTA
1 GATTA
76128946 TAGATTAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 3 0.14
21 11 0.50
22 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (22 bp):
GATTAAATGAGATAAATTTGAT
Found at i:76130189 original size:15 final size:17
Alignment explanation
Indices: 76130159--76130190 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
76130149 TTGATACTTG
76130159 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
76130176 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
76130191 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:76135428 original size:38 final size:38
Alignment explanation
Indices: 76135369--76135499 Score: 127
Period size: 38 Copynumber: 3.2 Consensus size: 38
76135359 TTTCAAATTA
*
76135369 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
76135407 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* * *
76135448 GAATCAATATATGTAACCGTGGCATATCCATTTAGCACCATGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
76135492 ACATGTAT
1 ACATGTAT
76135500 CAATACGTGT
Statistics
Matches: 75, Mismatches: 9, Indels: 18
0.74 0.09 0.18
Matches are distributed among these distances:
38 34 0.45
39 1 0.01
40 4 0.05
41 2 0.03
42 1 0.01
43 1 0.01
44 2 0.03
45 3 0.04
46 1 0.01
47 26 0.35
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:76135468 original size:47 final size:48
Alignment explanation
Indices: 76135414--76135532 Score: 168
Period size: 48 Copynumber: 2.5 Consensus size: 48
76135404 GTTACATGTT
*
76135414 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATACATG
* * * * *
76135461 TAACCGTGGCATATCCATTTAGCACCATGTTACATGTATCAATACGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATACATG
*
76135509 TAATCGTGGTATATCCACTTAGCA
1 TAACCGTGGTATATCCACTTAGCA
76135533 TAACGTTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
47 29 0.47
48 33 0.53
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATACATG
Found at i:76143011 original size:38 final size:38
Alignment explanation
Indices: 76142960--76143036 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
76142950 TTTCAAATTA
76142960 ACATGTATAACCGTGGCATACCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATACCCACTTAGCACCACGTT
* * * *
76142998 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTT
1 ACATGTATAACCGTGGCATACCCACTTAGCACCACGTT
76143036 A
1 A
76143037 ATGAATCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATACCCACTTAGCACCACGTT
Found at i:76143059 original size:47 final size:48
Alignment explanation
Indices: 76143005--76143133 Score: 179
Period size: 48 Copynumber: 2.7 Consensus size: 48
76142995 GTTACATGTT
*
76143005 TAACCGTGGTATATCCACTTAGCACCATGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCATGTTACATGAATCAATACATG
* * * *
76143052 TAACCGTGGAATATCCACATAGCACCACGTTACATGTATCAATACATG
1 TAACCGTGGTATATCCACTTAGCACCATGTTACATGAATCAATACATG
* * *
76143100 AAATCGTGCTATATCCACTTAGCACCATGTTACA
1 TAACCGTGGTATATCCACTTAGCACCATGTTACA
76143134 CGTATAACCG
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
47 29 0.41
48 41 0.59
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCATGTTACATGAATCAATACATG
Found at i:76153176 original size:40 final size:40
Alignment explanation
Indices: 76153063--76153245 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
76153053 AACCCAAGTA
* * *
76153063 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
76153102 CCTTCGGGTCCTAGGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTA-GCCCGGATATAGTCAATAGCACAAATG
*
76153143 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
76153183 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
76153223 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
76153246 CATTCGAATA
Statistics
Matches: 127, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 9 0.07
40 85 0.67
41 30 0.24
42 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:76161174 original size:49 final size:47
Alignment explanation
Indices: 76161000--76161315 Score: 479
Period size: 47 Copynumber: 6.6 Consensus size: 47
76160990 CCCTTCGGGA
* * * * * *
76161000 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76161047 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76161094 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76161141 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76161190 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76161239 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76161286 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
76161316 TCAAATATAC
Statistics
Matches: 252, Mismatches: 15, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 158 0.63
49 94 0.37
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76165209 original size:40 final size:40
Alignment explanation
Indices: 76165183--76165648 Score: 797
Period size: 40 Copynumber: 11.7 Consensus size: 40
76165173 TGATTACTCT
* * * *
76165183 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* ** * *
76165223 TTGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
76165263 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
76165303 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
76165343 TCGGGACTTAACCCGGATATACCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
76165383 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
76165423 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
76165463 TCGGGACTTAGCCCGGATATACCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
76165503 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
76165543 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
76165583 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
76165623 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
76165649 CTCAATTCTC
Statistics
Matches: 402, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 402 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:76167178 original size:47 final size:47
Alignment explanation
Indices: 76167100--76167602 Score: 792
Period size: 47 Copynumber: 10.6 Consensus size: 47
76167090 CCCTTCGGTA
* * * * * *
76167100 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76167147 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76167194 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76167241 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76167288 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76167335 CTTATCACATATATATACACTTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76167384 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76167431 CTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76167477 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76167526 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76167573 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
76167603 TCAAATATAC
Statistics
Matches: 422, Mismatches: 29, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
46 34 0.08
47 300 0.71
48 10 0.02
49 78 0.18
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76173151 original size:15 final size:15
Alignment explanation
Indices: 76173118--76173197 Score: 99
Period size: 15 Copynumber: 5.4 Consensus size: 15
76173108 CAAAGATAAT
*
76173118 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
76173132 AAGAAATCCAAAATA
1 AAGAAATCCAGAATA
* *
76173147 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
76173162 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
76173177 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
76173192 AAGAAA
1 AAGAAA
76173198 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
14 8 0.15
15 47 0.85
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:76173206 original size:15 final size:15
Alignment explanation
Indices: 76173129--76173206 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
76173119 AGAAAACCGA
*
76173129 ATAAAGAAATCCAAA
1 ATAAAGAAATCCAAG
* *
76173144 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
76173158 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
76173173 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76173189 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76173204 ATA
1 ATA
76173207 CGATATTATG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
14 3 0.06
15 45 0.88
16 3 0.06
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76175936 original size:37 final size:37
Alignment explanation
Indices: 76175886--76175956 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
76175876 ACCTTTAGCT
76175886 CAGACAAAATCTCCACACGTAGCCATCGGGTCTTACC
1 CAGACAAAATCTCCACACGTAGCCATCGGGTCTTACC
* *
76175923 CAGACATAATCTCCACACGTAGTCATCGGGTCTT
1 CAGACAAAATCTCCACACGTAGCCATCGGGTCTT
76175957 TAGAGCTCGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGTAGCCATCGGGTCTTACC
Found at i:76184234 original size:7 final size:7
Alignment explanation
Indices: 76184224--76184298 Score: 64
Period size: 7 Copynumber: 10.3 Consensus size: 7
76184214 TGATAATTAT
76184224 TAATATA
1 TAATATA
76184231 TAATATA
1 TAATATA
*
76184238 TTCAT-TA
1 -TAATATA
76184245 TAATATA
1 TAATATA
*
76184252 TATTAATTA
1 TAAT-A-TA
76184261 TTAATATA
1 -TAATATA
76184269 TAATATA
1 TAATATA
76184276 TAATATA
1 TAATATA
*
76184283 TTCAT-TA
1 -TAATATA
76184290 TAATATA
1 TAATATA
76184297 TA
1 TA
76184299 TTAATTATTA
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
6 6 0.11
7 34 0.62
8 9 0.16
9 3 0.05
10 3 0.05
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (7 bp):
TAATATA
Found at i:76184246 original size:14 final size:14
Alignment explanation
Indices: 76184216--76184297 Score: 87
Period size: 14 Copynumber: 5.6 Consensus size: 14
76184206 AAAAAGGATG
76184216 ATAAT-TATTAATAT
1 ATAATATATTAAT-T
*
76184230 ATAATATATTCATT
1 ATAATATATTAATT
76184244 ATAATATATATTAATT
1 AT-A-ATATATTAATT
76184260 ATTAATATA-TAATAT
1 A-TAATATATTAAT-T
*
76184275 ATAATATATTCATT
1 ATAATATATTAATT
76184289 ATAATATAT
1 ATAATATAT
76184298 ATTAATTATT
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
14 29 0.49
15 17 0.29
16 12 0.20
17 1 0.02
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
ATAATATATTAATT
Found at i:76184252 original size:16 final size:16
Alignment explanation
Indices: 76184221--76184306 Score: 85
Period size: 16 Copynumber: 5.6 Consensus size: 16
76184211 GGATGATAAT
76184221 TATTAA-TAT-ATAATA
1 TATTAATTATAAT-ATA
*
76184236 TATTCATTATAATATA
1 TATTAATTATAATATA
*
76184252 TATTAATTATTA-ATA
1 TATTAATTATAATATA
76184267 TA-TAA-TAT-ATAATA
1 TATTAATTATAAT-ATA
*
76184281 TATTCATTATAATATA
1 TATTAATTATAATATA
76184297 TATTAATTAT
1 TATTAATTAT
76184307 TATCAACTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
12 1 0.02
13 3 0.05
14 8 0.14
15 12 0.20
16 31 0.53
17 4 0.07
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTAATTATAATATA
Found at i:76184256 original size:31 final size:31
Alignment explanation
Indices: 76184221--76184298 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
76184211 GGATGATAAT
*
76184221 TATTAA-TATATAATATATTCAT-TATAATATA
1 TATTAATTAT-TAATATA-TAATATATAATATA
76184252 TATTAATTATTAATATATAATATAT-A-ATA
1 TATTAATTATTAATATATAATATATAATATA
*
76184281 TATTCATTA-TAATATATA
1 TATTAATTATTAATATATA
76184299 TTAATTATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
28 9 0.21
29 11 0.26
30 4 0.09
31 16 0.37
32 3 0.07
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (31 bp):
TATTAATTATTAATATATAATATATAATATA
Found at i:76184268 original size:38 final size:38
Alignment explanation
Indices: 76184217--76184308 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 38
76184207 AAAAGGATGA
76184217 TAATTATTAATATATAATATATTCATTATAATATATAT
1 TAATTATTAATATATAATATATTCATTATAATATATAT
76184255 TAATTATTAATATATAATATATAATATATTCATTATAATATATAT
1 T-A--A-T--TAT-TAATATATAATATATTCATTATAATATATAT
76184300 TAATTATTA
1 TAATTATTA
76184309 TCAACTTTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
38 3 0.06
39 4 0.09
41 2 0.04
42 2 0.04
44 4 0.09
45 32 0.68
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (38 bp):
TAATTATTAATATATAATATATTCATTATAATATATAT
Found at i:76191347 original size:17 final size:16
Alignment explanation
Indices: 76191316--76191349 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
76191306 AAATATTATG
76191316 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
76191332 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
76191349 A
1 A
76191350 CATCATCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:76196775 original size:43 final size:43
Alignment explanation
Indices: 76196673--76196765 Score: 150
Period size: 43 Copynumber: 2.2 Consensus size: 43
76196663 CACATGGCTA
* * *
76196673 AGACATACGCCCGTGTCTTAGGCTGTGTGGGTATTCGAAGTAG
1 AGACACACGCCCGTGTCTTAGGCCGTGTGGGCATTCGAAGTAG
*
76196716 GGACACACGCCCGTGTCTTAGGCCGTGTGGGCATTCGAAGTAG
1 AGACACACGCCCGTGTCTTAGGCCGTGTGGGCATTCGAAGTAG
76196759 AGACACA
1 AGACACA
76196766 TGGTTGTGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (43 bp):
AGACACACGCCCGTGTCTTAGGCCGTGTGGGCATTCGAAGTAG
Found at i:76200105 original size:21 final size:21
Alignment explanation
Indices: 76200062--76200105 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
76200052 ACACACTCAG
*
76200062 CTTAATTGAGCTATTAATGAA
1 CTTAATTGAGCTATTAATAAA
76200083 CTTAATTGAGCTAATTAA-AAA
1 CTTAATTGAGCT-ATTAATAAA
76200104 CT
1 CT
76200106 ACAAGACCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (21 bp):
CTTAATTGAGCTATTAATAAA
Found at i:76202646 original size:20 final size:20
Alignment explanation
Indices: 76202623--76202668 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
76202613 TTTACCTCAA
76202623 TTTTCTCAATTTTCCTTTCT
1 TTTTCTCAATTTTCCTTTCT
* *
76202643 TTTTCTCGATTTTCTTTTCT
1 TTTTCTCAATTTTCCTTTCT
76202663 TTTTCT
1 TTTTCT
76202669 TTTTATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.07, C:0.22, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTTCTCAATTTTCCTTTCT
Found at i:76202666 original size:6 final size:6
Alignment explanation
Indices: 76202638--76202706 Score: 59
Period size: 6 Copynumber: 10.8 Consensus size: 6
76202628 TCAATTTTCC
* *
76202638 TTTCTT TTTCTCGAT TTTC-T TTTCTT TTTCTTT TTATTTT TTTCTT GTTCTT
1 TTTCTT TTTCT---T TTTCTT TTTCTT TTTC-TT TT-TCTT TTTCTT TTTCTT
*
76202690 TTTCTT TTACTT TTTCT
1 TTTCTT TTTCTT TTTCT
76202707 ACAGACTCTT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
5 5 0.10
6 32 0.63
7 8 0.16
8 1 0.02
9 5 0.10
ACGTcount: A:0.04, C:0.16, G:0.03, T:0.77
Consensus pattern (6 bp):
TTTCTT
Found at i:76202670 original size:26 final size:26
Alignment explanation
Indices: 76202638--76202697 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
76202628 TCAATTTTCC
*
76202638 TTTCTTTTTCTCGATTTTCTT-TTCTT
1 TTTCTTTTTAT-GATTTTCTTGTTCTT
**
76202664 TTTCTTTTTATTTTTTTCTTGTTCTT
1 TTTCTTTTTATGATTTTCTTGTTCTT
76202690 TTTCTTTT
1 TTTCTTTT
76202698 ACTTTTTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 7 0.23
26 23 0.77
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.78
Consensus pattern (26 bp):
TTTCTTTTTATGATTTTCTTGTTCTT
Found at i:76202680 original size:20 final size:20
Alignment explanation
Indices: 76202657--76202697 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
76202647 CTCGATTTTC
*
76202657 TTTTCTTTTTCTTTTTATTT
1 TTTTCTTGTTCTTTTTATTT
*
76202677 TTTTCTTGTTCTTTTTCTTT
1 TTTTCTTGTTCTTTTTATTT
76202697 T
1 T
76202698 ACTTTTTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.02, C:0.12, G:0.02, T:0.83
Consensus pattern (20 bp):
TTTTCTTGTTCTTTTTATTT
Found at i:76202698 original size:25 final size:25
Alignment explanation
Indices: 76202652--76202704 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
76202642 TTTTTCTCGA
*
76202652 TTTTCTTTTCTTTTTCTTTTTATTT
1 TTTTCTTTTCTTTTTCTTTTTACTT
76202677 TTTTCTTGTTCTTTTTC-TTTTACTT
1 TTTTCTT-TTCTTTTTCTTTTTACTT
76202702 TTT
1 TTT
76202705 CTACAGACTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81
Consensus pattern (25 bp):
TTTTCTTTTCTTTTTCTTTTTACTT
Found at i:76209423 original size:40 final size:40
Alignment explanation
Indices: 76209369--76209463 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
76209359 CGGATGTAAC
* *
76209369 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
76209409 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
76209449 AACCCGCACGAATGC
1 AACCCGCACGAATGC
76209464 TATGCACATA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:76215414 original size:21 final size:21
Alignment explanation
Indices: 76215371--76215414 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
76215361 ACACACTCAG
*
76215371 CTTAATTAAGCTATTAATGAA
1 CTTAATTAAGCTATTAATAAA
*
76215392 CTTAATTGAGCTAATTAA-AAA
1 CTTAATTAAGCT-ATTAATAAA
76215413 CT
1 CT
76215415 ACAAGACCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (21 bp):
CTTAATTAAGCTATTAATAAA
Found at i:76217525 original size:15 final size:15
Alignment explanation
Indices: 76217505--76217534 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
76217495 TACATTTGAG
76217505 ATTTTCTTATCTTTT
1 ATTTTCTTATCTTTT
76217520 ATTTTCTTATCTTTT
1 ATTTTCTTATCTTTT
76217535 CATTATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTTCTTATCTTTT
Found at i:76217720 original size:16 final size:17
Alignment explanation
Indices: 76217701--76217732 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76217691 AATCAATGTC
76217701 ATAAATAAA-CTTAATA
1 ATAAATAAATCTTAATA
76217717 ATAAATAAATCTTAAT
1 ATAAATAAATCTTAAT
76217733 TAAAACTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAAATAAATCTTAATA
Found at i:76218425 original size:19 final size:19
Alignment explanation
Indices: 76218401--76218439 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
76218391 ATGTATGTTT
76218401 AATAACATTGAAATTTATA
1 AATAACATTGAAATTTATA
76218420 AATAACATTGAAATTTATA
1 AATAACATTGAAATTTATA
76218439 A
1 A
76218440 TATTTTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (19 bp):
AATAACATTGAAATTTATA
Found at i:76220123 original size:14 final size:14
Alignment explanation
Indices: 76220106--76220136 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
76220096 GTGTACTCCC
76220106 TATTTTTTACTTTT
1 TATTTTTTACTTTT
76220120 TATTTTTTACTTTT
1 TATTTTTTACTTTT
76220134 TAT
1 TAT
76220137 ATTATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.77
Consensus pattern (14 bp):
TATTTTTTACTTTT
Found at i:76220145 original size:20 final size:20
Alignment explanation
Indices: 76220119--76220163 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
76220109 TTTTTACTTT
* *
76220119 TTATTTTT-TACTTTTTATA
1 TTATTTTTATAATTTTTAAA
76220138 TTATTTTTATAATTTTTAAA
1 TTATTTTTATAATTTTTAAA
76220158 TTATTT
1 TTATTT
76220164 ATTAGCATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (20 bp):
TTATTTTTATAATTTTTAAA
Found at i:76222412 original size:32 final size:33
Alignment explanation
Indices: 76222359--76222432 Score: 116
Period size: 32 Copynumber: 2.3 Consensus size: 33
76222349 CTGCATGAAT
*
76222359 TGTTTCTTCAGTTTTTTTTACCCAAATTCAAGA
1 TGTTTCTTCAGTTTTTCTTACCCAAATTCAAGA
76222392 TGTTTCTTCA-TTTTTCTTACCCAAATTCAAGA
1 TGTTTCTTCAGTTTTTCTTACCCAAATTCAAGA
*
76222424 T-TTTGTTCA
1 TGTTTCTTCA
76222433 AGGAACATTG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 7 0.18
32 22 0.56
33 10 0.26
ACGTcount: A:0.23, C:0.19, G:0.08, T:0.50
Consensus pattern (33 bp):
TGTTTCTTCAGTTTTTCTTACCCAAATTCAAGA
Found at i:76235270 original size:29 final size:28
Alignment explanation
Indices: 76235232--76235359 Score: 139
Period size: 29 Copynumber: 4.5 Consensus size: 28
76235222 TGAAGAAGTA
* *
76235232 TCTTTGTGGCTATCTTTGATTAAAGGAAG
1 TCTTTGTGGCTATCTCTG-TTAAAAGAAG
*
76235261 TCTTTGTGGCGATCTCTGTTATAAAGAAG
1 TCTTTGTGGCTATCTCTGTTA-AAAGAAG
* * *
76235290 CCTTTGTGGCAATCTTTGTTAAAAAGAAG
1 TCTTTGTGGCTATCTCTGTT-AAAAGAAG
* * *
76235319 TCTTTATGGTTATCTCTGTTAAAGGAAG
1 TCTTTGTGGCTATCTCTGTTAAAAGAAG
*
76235347 TTTTTGTGGCTAT
1 TCTTTGTGGCTAT
76235360 TGTAACACGT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
28 20 0.24
29 61 0.74
30 1 0.01
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (28 bp):
TCTTTGTGGCTATCTCTGTTAAAAGAAG
Found at i:76235296 original size:58 final size:57
Alignment explanation
Indices: 76235233--76235359 Score: 157
Period size: 58 Copynumber: 2.2 Consensus size: 57
76235223 GAAGAAGTAT
* *
76235233 CTTTGTGGCTATCTTTGATT-AAAGGAAGTCTTTGTGGCGATCTCTGTTATAAAGAAGC
1 CTTTGTGGCTATCTTTG-TTAAAAAGAAGTCTTTATGGCGATCTCTGTTA-AAAGAAGC
* ** * *
76235291 CTTTGTGGCAATCTTTGTTAAAAAGAAGTCTTTATGGTTATCTCTGTTAAAGGAAGT
1 CTTTGTGGCTATCTTTGTTAAAAAGAAGTCTTTATGGCGATCTCTGTTAAAAGAAGC
*
76235348 TTTTGTGGCTAT
1 CTTTGTGGCTAT
76235360 TGTAACACGT
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
57 18 0.31
58 41 0.69
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (57 bp):
CTTTGTGGCTATCTTTGTTAAAAAGAAGTCTTTATGGCGATCTCTGTTAAAAGAAGC
Found at i:76239925 original size:80 final size:81
Alignment explanation
Indices: 76239762--76239942 Score: 267
Period size: 80 Copynumber: 2.2 Consensus size: 81
76239752 CCTGTAAGAT
* *
76239762 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACTAT
1 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCAT
* *
76239827 TTTACCATCGGTTTAC
66 CTTACCATCGATTTAC
* * *
76239843 AGAATTACCGTTTTACCCTCGATTTATAGAATTA-C-TATTTTCCCTCGATTTACAGAATTACCA
1 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGT-TTTACCCTCGATTTACAGAATTACCA
*
76239906 TCTTACCCTCGATTTAC
65 TCTTACCATCGATTTAC
76239923 AGAATTACCATTTTACCCTC
1 AGAATTACCATTTTACCCTC
76239943 AATATAAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.01
80 57 0.63
81 32 0.36
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCAT
CTTACCATCGATTTAC
Found at i:76239957 original size:27 final size:27
Alignment explanation
Indices: 76239762--76239942 Score: 265
Period size: 27 Copynumber: 6.7 Consensus size: 27
76239752 CCTGTAAGAT
76239762 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
76239789 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
76239816 AGAATTACTATTTTACCATCGGTTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
76239843 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
76239870 AGAATTACTATTTT-CCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
76239896 AGAATTACCATCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
76239923 AGAATTACCATTTTACCCTC
1 AGAATTACCATTTTACCCTC
76239943 AATATAAAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.17
27 110 0.83
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:76239976 original size:54 final size:54
Alignment explanation
Indices: 76239918--76240048 Score: 156
Period size: 54 Copynumber: 2.4 Consensus size: 54
76239908 TTACCCTCGA
* *** **
76239918 TTTACAGAATTACCATTTTACCCTCAAT-ATAAAAAATTACTGAAATACCATTGG
1 TTTACAAAATTACCAAAATACCCTCAATCA-AAAAAATTACCAAAATACCATTGG
* *
76239972 TTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCATTGG
1 TTTACAAAATTACCAAAATACCCTCAATCAAAAAAATTACCAAAATACCATTGG
**
76240026 TTTGTAAAATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
76240049 CTTCTTTGTA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 65 0.98
55 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.30
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCAATCAAAAAAATTACCAAAATACCATTGG
Found at i:76239980 original size:27 final size:27
Alignment explanation
Indices: 76239950--76240074 Score: 117
Period size: 27 Copynumber: 4.6 Consensus size: 27
76239940 CTCAATATAA
** *
76239950 AAAATTACTGAAATACCATTGGTTTAC
1 AAAATTACCAAAATACCATTGGTTTAT
* * * **
76239977 AAAATTACCAAAATACCCTCGATCAAT
1 AAAATTACCAAAATACCATTGGTTTAT
*
76240004 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCATTGGTTTAT
* * *
76240031 AAAATTACCAAAATACCCCTT-CTTTGT
1 AAAATTACCAAAATA-CCATTGGTTTAT
*
76240058 AGAATTACCAAAATACC
1 AAAATTACCAAAATACC
76240075 CCTGTAGGGT
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.03
27 74 0.93
28 4 0.05
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCATTGGTTTAT
Found at i:76240010 original size:134 final size:134
Alignment explanation
Indices: 76239762--76240011 Score: 322
Period size: 134 Copynumber: 1.9 Consensus size: 134
76239752 CCTGTAAGAT
* * * * * * *
76239762 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACTAT
1 AGAATTACCATCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATATAAAAAATTACTAT
** * **** ** *
76239827 TTTACCATCGGTTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTCCCTCGAT
66 AATACCATCGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACTATTTTCCCTCGAT
76239892 TTAC
131 TTAC
76239896 AGAATTACCATCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATATAAAAAATTACTGA
1 AGAATTACCATCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATATAAAAAATTACT-A
*
76239961 -AATACCATTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTAC
65 TAATACCATCGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTAC
76240012 CAAAATACCA
Statistics
Matches: 97, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
134 96 0.99
135 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (134 bp):
AGAATTACCATCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATATAAAAAATTACTAT
AATACCATCGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACTATTTTCCCTCGAT
TTAC
Found at i:76240086 original size:27 final size:27
Alignment explanation
Indices: 76240033--76240229 Score: 234
Period size: 27 Copynumber: 7.3 Consensus size: 27
76240023 TGGTTTGTAA
***
76240033 AATTACCAAAATACCCCT-TCTTTGTAG
1 AATTACCAAAATACCCCTGT-AGGGTAG
76240060 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
76240087 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
76240114 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
76240141 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
76240168 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
76240195 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
76240222 AATTACCA
1 AATTACCA
76240230 TTTTGCCCCT
Statistics
Matches: 148, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 147 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:76240668 original size:31 final size:31
Alignment explanation
Indices: 76240630--76240700 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
76240620 TTGCATTCAC
*
76240630 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTATGTTACCTGATACCG
*
76240661 ATTCTGATTTTGATTATGTTACCTGATACTG
1 ATTCTGATTTTGATTATGTTACCTGATACCG
76240692 ATTCTGATT
1 ATTCTGATT
76240701 CTATCACCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTATGTTACCTGATACCG
Found at i:76240674 original size:6 final size:6
Alignment explanation
Indices: 76240630--76240742 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
76240620 TTGCATTCAC
* * * * *
76240630 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTATG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
76240679 -TTACCTG ATACTG ATTCTG ATTCT- ATCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
76240729 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
76240743 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
5 7 0.09
6 63 0.77
7 8 0.10
8 4 0.05
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:76244593 original size:49 final size:49
Alignment explanation
Indices: 76244537--76244768 Score: 288
Period size: 49 Copynumber: 4.7 Consensus size: 49
76244527 CTAGTACGCA
* * *
76244537 TAGTAGCCTGCACTTGGTACTATACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGATACACG
* * ** *
76244586 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGATACACG
* * *
76244636 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGCGTATGCA--
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATC-CG-ATACACG
* *
76244687 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGATACACG
76244736 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
76244769 TCACAATAGA
Statistics
Matches: 156, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
47 3 0.02
48 2 0.01
49 65 0.42
50 48 0.31
51 33 0.21
52 1 0.01
53 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGATACACG
Found at i:76244759 original size:100 final size:101
Alignment explanation
Indices: 76244586--76244766 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
76244576 CCGATACACG
* *
76244586 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
76244651 AGTACTACACACGTGATCGAAGTTATCGCGTATGCA
66 AGTACTACACACGTGATCGAAGTTATCGCGTATGCA
* * ** *
76244687 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
*
76244751 AGTACTACACATGTGA
66 AGTACTACACACGTGA
76244767 CCTCACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 42 0.58
101 30 0.42
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCTAACCATCCGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTATCGCGTATGCA
Found at i:76247558 original size:15 final size:15
Alignment explanation
Indices: 76247540--76247572 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
76247530 GAAGCCTAGA
76247540 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
76247555 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
76247570 ATA
1 ATA
76247573 CGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76250727 original size:49 final size:49
Alignment explanation
Indices: 76250674--76250847 Score: 249
Period size: 49 Copynumber: 3.5 Consensus size: 49
76250664 TAGTACGCAG
* *
76250674 AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATGT
1 AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGT
* * * * * *
76250723 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCAT
1 AGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACGT
*
76250774 AGTAACCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGT
76250823 AGTAGCCTGCACTTAGTACTACACA
1 AGTAGCCTGCACTTAGTACTACACA
76250848 CATGACCTCA
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 64 0.59
50 6 0.06
51 38 0.35
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
AGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGT
Found at i:76250800 original size:100 final size:100
Alignment explanation
Indices: 76250666--76250848 Score: 330
Period size: 100 Copynumber: 1.8 Consensus size: 100
76250656 AGGCTATCTA
* * *
76250666 GTACGCAGAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATGTAGTAGCCT
1 GTACGCAGAGTAACCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
76250731 GCACTTAGTACTACACACGTGATCGAAGTTATCGG
66 GCACTTAGTACTACACACGTGATCGAAGTTATCGG
*
76250766 GTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCAGAGTAACCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
76250831 GCACTTAGTACTACACAC
66 GCACTTAGTACTACACAC
76250849 ATGACCTCAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (100 bp):
GTACGCAGAGTAACCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTATCGG
Found at i:76253159 original size:95 final size:95
Alignment explanation
Indices: 76253003--76253233 Score: 327
Period size: 95 Copynumber: 2.4 Consensus size: 95
76252993 TCATACATCG
* * * * * * *
76253003 AGGCTGGTGCCATGTCCTAGAAAATGGTCTTACATTGGCTCTCATCTGTCGGTGCCGATGCCATG
1 AGGCTGATGCCATGTCCCAG-ACATGGTCTTACACTGGCTCGCATCTGTCAGTGCCAATGCCATG
* * *
76253068 TCCCAGACATGGTCTTACACTGACACATATC
65 TCCCAGACATAGTATTACACTAACACATATC
*
76253099 AGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCGCATCTGTCAGTGCCAATGCCATGT
1 AGGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATCTGTCAGTGCCAATGCCATGT
*
76253164 CCTAGACATAGTATTACACTAACACATATC
66 CCCAGACATAGTATTACACTAACACATATC
* *
76253194 AAGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 AGGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
76253234 ACATAACAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
95 102 0.85
96 18 0.15
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (95 bp):
AGGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATCTGTCAGTGCCAATGCCATGT
CCCAGACATAGTATTACACTAACACATATC
Found at i:76253181 original size:50 final size:50
Alignment explanation
Indices: 76253010--76253237 Score: 215
Period size: 45 Copynumber: 4.7 Consensus size: 50
76253000 TCGAGGCTGG
* * * * * *
76253010 TGCCATGTCCTAGAAAATGGTCTTACATTGGCTCTCATCTGTCGGTGCCGA
1 TGCCATGTCCCAG-ACATGGTCTTACACTAGCTCACATCTGTCAGTGCCGA
* * *
76253061 TGCCATGTCCCAGACATGGTCTTACACT-G-ACACA--TATCAG-GCTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTGTCAGTGCCGA
* *
76253106 TGCCATGTCCCAGACATGGTCTTACACTAGCTCGCATCTGTCAGTGCCAA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTGTCAGTGCCGA
* * * * * *
76253156 TGCCATGTCCTAGACATAGTATTACACTA--ACACA--TATCA-AGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTGTCAGTGCCGA
*
76253201 TGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT
76253238 AACAGCAATG
Statistics
Matches: 143, Mismatches: 26, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
45 61 0.43
46 9 0.06
47 7 0.05
48 6 0.04
49 6 0.04
50 42 0.29
51 12 0.08
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (50 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTGTCAGTGCCGA
Found at i:76259319 original size:50 final size:49
Alignment explanation
Indices: 76259265--76259510 Score: 293
Period size: 50 Copynumber: 5.0 Consensus size: 49
76259255 AATCTTACAC
* *
76259265 ATATCAATGCCGATGCCATATCCCAGATATGGTCTTACACTAGCTCTCAT
1 ATATCAA-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
* *
76259315 ATATCGAAGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCAT
1 ATATC-AAGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
* *
76259365 ATATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
1 ATATC-AAGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
* * ** * * *
76259415 CTGTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACACT-G---ACAC
1 ATATC-AAGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
* *
76259461 ATATCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
1 ATATCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
76259510 A
1 A
76259511 ACAGCAGTGT
Statistics
Matches: 171, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
45 32 0.19
46 6 0.04
49 5 0.03
50 126 0.74
51 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
ATATCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
Found at i:76263196 original size:40 final size:39
Alignment explanation
Indices: 76262973--76263234 Score: 293
Period size: 39 Copynumber: 6.6 Consensus size: 39
76262963 TTGAATGATG
*
76262973 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
76263011 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
76263052 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
76263091 TCCGGGCTAAGCCTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
76263130 TCCGGGCTAAGCCCGAAGGCATTTGTGCCAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76263169 TCCGGGTTAAGTCCCGAATGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
76263208 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
76263235 AACGAGGAGC
Statistics
Matches: 194, Mismatches: 22, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
39 128 0.66
40 54 0.28
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:76263265 original size:79 final size:79
Alignment explanation
Indices: 76263025--76263265 Score: 215
Period size: 78 Copynumber: 3.1 Consensus size: 79
76263015 GGACTAAGAT
* ** ** *
76263025 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAATGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACCAG-TGACTA
* * *
76263089 ATTCCGGGCT-AAGC
65 AATCCGGGTTAAATC
* * * ** *
76263103 CTGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCCAGTTACTAA
1 CCGAATGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACCAGTGACTAA
*
76263168 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
76263182 CCGAATGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAATGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACCAGTGA-
* *
76263244 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
76263261 CCGAA
1 CCGAA
76263266 GGTACGTGAT
Statistics
Matches: 139, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 70 0.50
79 44 0.32
80 24 0.17
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAATGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACCAGTGACTAA
ATCCGGGTTAAATC
Found at i:76274718 original size:27 final size:27
Alignment explanation
Indices: 76274688--76274864 Score: 185
Period size: 27 Copynumber: 6.5 Consensus size: 27
76274678 TATTGAGTCT
* * * *
76274688 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
* *
76274715 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
76274742 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
*** * *
76274770 GCACACTTAGTGCCGTATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAAATC
* **
76274797 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
**
76274824 GCACACTTAGTGAAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
76274851 GCACACTTAGTGCT
1 GCACACTTAGTGCT
76274865 GTACAATTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:76274826 original size:82 final size:81
Alignment explanation
Indices: 76274708--76274863 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
76274698 TGCTATATAA
* **
76274708 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGAAACATAGTCAAA-TCGCA
76274773 CACTTAGTGCCGTATGG
65 CACTTAGTGCCGTATGG
* * **
76274790 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGAAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGAAACATAGTCAAATCGCA
76274854 CACTTAGTGC
65 CACTTAGTGC
76274864 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGAAACATAGTCAAATCGCAC
ACTTAGTGCCGTATGG
Found at i:76280297 original size:22 final size:22
Alignment explanation
Indices: 76280272--76280313 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
76280262 TAGTCATATA
76280272 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* *
76280294 ATAAATTATTATTTTAATAA
1 ATAAATTATTAATATAATAA
76280314 TTTATTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:76283229 original size:42 final size:42
Alignment explanation
Indices: 76283170--76283273 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
76283160 AGGGTTACCG
* *
76283170 AGACTATT-TGTAAGACCATATCA-GGGATATGGCATCAATATA
1 AGACT-TTGTGTAAGACCATAT-ATGGAATATGGAATCAATATA
* *
76283212 AGACTTTGTGTAAGACCATATATGGAATATGGAATCGATATG
1 AGACTTTGTGTAAGACCATATATGGAATATGGAATCAATATA
76283254 AGA-TTTCGTGTAAGACCATA
1 AGACTTT-GTGTAAGACCATA
76283274 GTTGGGCTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
41 6 0.11
42 49 0.89
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (42 bp):
AGACTTTGTGTAAGACCATATATGGAATATGGAATCAATATA
Found at i:76288103 original size:6 final size:6
Alignment explanation
Indices: 76288085--76288204 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
76288075 AAGAAACATT
*
76288085 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
76288134 ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAAGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATC-AG-A
*
76288185 AT-AGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
76288205 GTGAATGCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 7 0.08
6 65 0.72
7 14 0.16
8 4 0.04
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:76288106 original size:18 final size:18
Alignment explanation
Indices: 76288085--76288204 Score: 86
Period size: 19 Copynumber: 6.4 Consensus size: 18
76288075 AAGAAACATT
76288085 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
76288103 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
* *
76288120 GTGACAGAATCAGAATCAAA
1 AT--CAGAATCAGAATCAGA
*
76288140 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
76288159 ATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
*
76288177 ATCAAGTAAT-AGAATCAAAA
1 ATC-AG-AATCAGAATC-AGA
76288197 ATCAGAAT
1 ATCAGAAT
76288205 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
17 3 0.04
18 32 0.40
19 36 0.44
20 10 0.12
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:76288132 original size:31 final size:31
Alignment explanation
Indices: 76288094--76288204 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
76288084 TATCAGAACT
* * *
76288094 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
76288125 AGAATCAGAATCAAAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
76288156 AGAATCAAAATCAGAATCAGTATCAAGTAAT
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
76288187 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
76288205 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 61 0.85
32 11 0.15
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:76288383 original size:27 final size:26
Alignment explanation
Indices: 76288341--76288420 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
76288331 GCTCAGTTAT
* *
76288341 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
76288368 CAGTTATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
76288394 CAGATATTTGTGGCATAGCCACCAGAA
1 CAGATA-TTGTGGCAGAGCCACCAGAA
76288421 ACAAATAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 6 0.13
27 41 0.87
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:76288434 original size:27 final size:27
Alignment explanation
Indices: 76288377--76288442 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
76288367 ACAGTTATTG
* * * *
76288377 TGGCAGAGCCACCAGAACAGATATTTG
1 TGGCAAAGCCACCAGAACAAATATATA
*
76288404 TGGCATAGCCACCAGAAACAAATA-ATA
1 TGGCAAAGCCACCAG-AACAAATATATA
76288431 TGGCAAAGCCAC
1 TGGCAAAGCCAC
76288443 TTAACAGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 26 0.79
28 7 0.21
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.15
Consensus pattern (27 bp):
TGGCAAAGCCACCAGAACAAATATATA
Found at i:76288636 original size:22 final size:22
Alignment explanation
Indices: 76288610--76288665 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
76288600 TTTCGTACAC
* *
76288610 AGCCATAATCAGGTTGGCACAG
1 AGCCATAATCAGGTTGACACAA
*
76288632 AGCCAT-ATGTAGGTTGACACAA
1 AGCCATAAT-CAGGTTGACACAA
76288654 AGCCATAATCAG
1 AGCCATAATCAG
76288666 AAGGCTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 2 0.07
22 24 0.86
23 2 0.07
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (22 bp):
AGCCATAATCAGGTTGACACAA
Found at i:76289148 original size:27 final size:27
Alignment explanation
Indices: 76289118--76289420 Score: 335
Period size: 27 Copynumber: 11.2 Consensus size: 27
76289108 AGGTATCTCG
*
76289118 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
76289145 GTAATTCTATCCTACAGGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTTA
* **
76289171 GATAATTCTACCTTACAGGGGTA-TTGC
1 G-TAATTCTACCCTACAGGGGTATTTTA
* *
76289198 GATAATTCTACCTTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTTA
* **
76289226 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
* * * *
76289253 GTAATTCTACCCTACAGAGATATTCTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
76289280 GTAATTCTACCCTACAGGGGTATTCTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* **
76289307 GTAATTTTACCCTACAGGGGTA-TTGC
1 GTAATTCTACCCTACAGGGGTATTTTA
*
76289333 GATAATTCTACCCTACAGGGGTA-TTTC
1 G-TAATTCTACCCTACAGGGGTATTTTA
*
76289360 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTTA
*
76289388 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
76289415 GTAATT
1 GTAATT
76289421 TCACAAATCA
Statistics
Matches: 244, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.02
27 232 0.95
28 6 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:76289218 original size:81 final size:80
Alignment explanation
Indices: 76289109--76289412 Score: 421
Period size: 81 Copynumber: 3.8 Consensus size: 80
76289099 TACCCCACAA
* * * *
76289109 GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTATCCTACAGGGGTATTTCGAT
1 GGTAT-TCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGAT
*
76289174 AATTCTACCTTACAGG
65 AATTCTACCCTACAGG
* * *
76289190 GGTATTGCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGT
1 GGTATT-CGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGAT
*
76289255 AATTCTACCCTACAGA
65 AATTCTACCCTACAGG
* * * * *
76289271 GATATTCTGGTAATTCTACCCTACAGGGGTA-TTCTGGTAATTTTACCCTACAGGGGTATTGCGA
1 GGTATTC-GATAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTTCGA
76289335 TAATTCTACCCTACAGG
64 TAATTCTACCCTACAGG
*
76289352 GGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
1 GGTA-TTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
76289413 TAGTAATTTC
Statistics
Matches: 194, Mismatches: 24, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
80 5 0.03
81 183 0.94
82 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (80 bp):
GGTATTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATA
ATTCTACCCTACAGG
Found at i:76289683 original size:108 final size:108
Alignment explanation
Indices: 76289405--76289853 Score: 673
Period size: 108 Copynumber: 4.2 Consensus size: 108
76289395 TACCCTACAA
* * * * *
76289405 GGGTATTTTAGTAATTTCACAAATCAAGGGTATTTTGGTAATTTTACCAACCAGGGATATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
* *
76289470 TAATTTTATAAATAAAGGGTATTTTAGTAATTTTACAAACTAG
66 TAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
* ** * *
76289513 GAGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
*
76289578 TAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
66 TAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
**
76289621 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
* * *
76289686 TGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAG
66 TAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
* ** * *
76289729 GGGTATTTTGGTACTTTTGTAAACCAAAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
* *
76289794 TGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
66 TAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
76289837 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
76289854 GGCAAACTAA
Statistics
Matches: 314, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 314 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (108 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
TAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:76289860 original size:27 final size:27
Alignment explanation
Indices: 76289405--76289853 Score: 565
Period size: 27 Copynumber: 16.6 Consensus size: 27
76289395 TACCCTACAA
* * * *
76289405 GGGTATTTTAGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76289432 GGGTATTTTGGTAATTTTACCAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * ** *
76289459 GGATATTTTGGTAATTTTATAAATAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
76289486 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* **
76289513 GAGTATTTTAATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76289540 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
76289567 GGGTATTTTGGTAATTTTACAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76289594 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
76289621 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
76289648 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
76289675 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
76289702 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
76289729 GGGTATTTTGGTACTTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
76289756 AGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
76289783 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76289810 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
76289837 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
76289854 GGCAAACTAA
Statistics
Matches: 356, Mismatches: 66, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 356 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:76291834 original size:6 final size:6
Alignment explanation
Indices: 76291806--76291925 Score: 68
Period size: 6 Copynumber: 19.3 Consensus size: 6
76291796 AAGAAACATT
* * *
76291806 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
76291855 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATGAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
76291906 AT-AGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
76291926 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
5 7 0.08
6 62 0.72
7 13 0.15
8 4 0.05
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:76291858 original size:31 final size:31
Alignment explanation
Indices: 76291815--76291925 Score: 159
Period size: 31 Copynumber: 3.5 Consensus size: 31
76291805 TATCAGAACT
* * *
76291815 AGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
76291846 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
76291877 AGAATCAAAATGAGAATCAGTATCAGGTAAT
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
76291908 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
76291926 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 61 0.86
32 10 0.14
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:76292104 original size:27 final size:26
Alignment explanation
Indices: 76292062--76292163 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
76292052 GCTCAGTTAT
* *
76292062 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
76292089 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
76292115 CAGATATTTGTGGCATAGCCACAAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
76292143 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
76292164 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 7 0.10
27 52 0.78
28 8 0.12
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:76292356 original size:22 final size:22
Alignment explanation
Indices: 76292324--76292387 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
76292314 AAATACGTTC
*
76292324 GGCACACAGCCATAATCAGGTT
1 GGCACAAAGCCATAATCAGGTT
* *
76292346 GGCACATAGCCAT-ATGTAGGTT
1 GGCACAAAGCCATAAT-CAGGTT
**
76292368 AACACAAAGCCATAATCAGG
1 GGCACAAAGCCATAATCAGG
76292388 AGGCTTTAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (22 bp):
GGCACAAAGCCATAATCAGGTT
Done.