Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 232 of 356
Found at i:76292869 original size:27 final size:27
Alignment explanation
Indices: 76292811--76293357 Score: 428
Period size: 27 Copynumber: 20.3 Consensus size: 27
76292801 AGGGGCAAAA
* * * *
76292811 TGGTAATTTTACCCCACA-AGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
76292837 CGGTAATTCCACCCTACAGAGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
76292864 TAGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
76292891 CGGTAATTCTACCCTACAAGGGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
76292918 TGATAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
**
76292945 CAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
76292972 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
76292999 CGGTAATTCTACCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTT
*
76293026 TGGTAATTCTACCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * *
76293053 TGGTAATTTTACCCTATAAGGGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
76293080 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** * *
76293107 CAGTAATTCTACCATATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
76293134 TAGTAATTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** *
76293161 TGGTAATT-T-CACAAATCAAGGGTATTT
1 TGGTAATTCTAC-CCTA-CAGGGGTATTT
* ** *
76293188 TGGTAATTTTA-CAAACCAGGGGTTTTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
* *** *
76293215 TGGTAATTTTA-TAAACAAAGGGTATTT
1 TGGTAATTCTACCCTAC-AGGGGTATTT
* * **
76293242 TAGTAATTTTA-CAAACCAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
* * **
76293269 TGATAATTTTA-CAAACCAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
* * **
76293296 TGATAATTTTA-CAAACCAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
* **
76293323 TGGTAATTTTA-CAAACCAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
76293350 TGGTAATT
1 TGGTAATT
76293358 TTGTAAACCA
Statistics
Matches: 456, Mismatches: 58, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
25 1 0.00
26 18 0.04
27 435 0.95
28 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:76293184 original size:54 final size:54
Alignment explanation
Indices: 76292857--76293572 Score: 338
Period size: 54 Copynumber: 13.3 Consensus size: 54
76292847 ACCCTACAGA
* * * ** *
76292857 GGTATTTTAGTAATTCCACCCTACAGGGGTATTTCGGTAA-TTCTAC-CCTACAAG
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTC-ACAAAT-CAGG
* * * ** **
76292911 GGTATTGTGATAATTCTACCTTACAGGGGTATTTCAGTAA-TTCTAC-CCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTC-ACAAAT-CAGG
* * **
76292965 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAA-TTCTAC-CCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTC-ACAAAT-CAGG
* * * ** *
76293019 GGTATTCTGGTAATTCTACCCTACAGGGGTATTCTGGTAATTTTACCCTAT-AAG
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTCA-CAAATCAGG
** * ** *
76293073 GGTATTGCGATAATTCTACCCTACAGGGGTATTTCAGTAA-TTCTACCATAT-AGG
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTC-A-CAAATCAGG
* * *
76293127 GGTATTTTAGTAATTCTACCCTACAAGGGTATTTTGGTAATTTCACAAATCAAG
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTCACAAATCAGG
* ** * * * *
76293181 GGTATTTTGGTAATTTTA-CAAACCAGGGGTTTTTTGGTAATTTTATAAA-CAAAG
1 GGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTGGTAATTTCACAAATC-AGG
* * ** * * *
76293235 GGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTGGTAATTTCACAAATCAGG
* * ** * *
76293289 GGTATTTTGATAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTGGTAATTTCACAAATCAGG
* * * * * *
76293343 GGTATTTTGGTAATTTTGTAAACC-A-A-GGGCATTTTGGTAATTTTACTAACCAGG
1 GGTATTTTGGTAA--TTCT-ACCCTACAGGGGTATTTTGGTAATTTCACAAATCAGG
* * *** * * * * * * *
76293397 GGTATTTTGGTGATTTTA-TAAACCAAGGGTATTCTAGTGATTTTATAAACCAGG
1 GGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTGGTAATTTCACAAATCAGG
* * ** * * *
76293451 GGT-TTTTAGTAATTTTA-CAAACCAAGGGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTGGTAATTTCACAAATCAGG
* * *** * * * *
76293504 GGTATTTTGGTGATTTTA-TAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTGGTAATTTCACAAATCAGG
*
76293558 GATATTTTGGTAATT
1 GGTATTTTGGTAATT
76293573 TGGTAAACTA
Statistics
Matches: 562, Mismatches: 82, Indels: 36
0.83 0.12 0.05
Matches are distributed among these distances:
51 2 0.00
52 3 0.01
53 56 0.10
54 486 0.86
55 8 0.01
56 4 0.01
57 2 0.00
58 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (54 bp):
GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTCACAAATCAGG
Found at i:76293580 original size:27 final size:27
Alignment explanation
Indices: 76293153--76293573 Score: 574
Period size: 27 Copynumber: 15.6 Consensus size: 27
76293143 TACCCTACAA
* * *
76293153 GGGTATTTTGGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
76293180 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
76293207 GGGTTTTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76293234 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76293261 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76293288 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
76293315 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
76293342 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
76293369 GGGCATTTTGGTAATTTTACTAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
76293396 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
76293423 GGGTATTCTAGTGATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
76293450 GGGT-TTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
76293476 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
76293503 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76293530 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
76293557 GGATATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
76293574 GGTAAACTAA
Statistics
Matches: 347, Mismatches: 46, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 22 0.06
27 325 0.94
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:76295590 original size:19 final size:20
Alignment explanation
Indices: 76295551--76295591 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
76295541 CTAAGTTAGC
*
76295551 TTTCTTTGTGTGTATATATT
1 TTTCTTTGTGTGTATAGATT
*
76295571 TTTCTTTGT-TTTATAGATT
1 TTTCTTTGTGTGTATAGATT
76295590 TT
1 TT
76295592 AGAGATCGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.15, C:0.05, G:0.12, T:0.68
Consensus pattern (20 bp):
TTTCTTTGTGTGTATAGATT
Found at i:76300227 original size:42 final size:42
Alignment explanation
Indices: 76300112--76300238 Score: 125
Period size: 42 Copynumber: 3.0 Consensus size: 42
76300102 TCACATCTAG
*
76300112 GACGTTGGCATCGACTTATGATTTACATGTAAGACCACGTCTGA
1 GACGTTGGCATCGAATT-TGA-TTACATGTAAGACCACGTCTGA
*** *
76300156 GACGTTGGCATC-ATATTTGATTTTGTGTAAGACC-CTGTCTGG
1 GACGTTGGCATCGA-ATTTGATTACATGTAAGACCAC-GTCTGA
* *
76300198 GACAG-TGTCATCGAATTTGATTACATGTAAGATCACGTCTG
1 GAC-GTTGGCATCGAATTTGATTACATGTAAGACCACGTCTG
76300239 GGATGTTCGC
Statistics
Matches: 68, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 46 0.68
43 7 0.10
44 14 0.21
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
GACGTTGGCATCGAATTTGATTACATGTAAGACCACGTCTGA
Found at i:76313368 original size:25 final size:25
Alignment explanation
Indices: 76313335--76313386 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
76313325 ATTTGGTTTT
76313335 AAAAGATGGTCAAAAACTATTTAAA
1 AAAAGATGGTCAAAAACTATTTAAA
76313360 AAAAGATGGTCAAAAACTATTTAAA
1 AAAAGATGGTCAAAAACTATTTAAA
76313385 AA
1 AA
76313387 CTAAGTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.58, C:0.08, G:0.12, T:0.23
Consensus pattern (25 bp):
AAAAGATGGTCAAAAACTATTTAAA
Found at i:76313879 original size:24 final size:24
Alignment explanation
Indices: 76313849--76313897 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
76313839 TAGTTATTTA
76313849 AAAATTATATTGCAAAAATAACTT
1 AAAATTATATTGCAAAAATAACTT
76313873 AAAATTATATTGCAAAAATAACTT
1 AAAATTATATTGCAAAAATAACTT
76313897 A
1 A
76313898 GGCATGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.08, G:0.04, T:0.33
Consensus pattern (24 bp):
AAAATTATATTGCAAAAATAACTT
Found at i:76319405 original size:7 final size:7
Alignment explanation
Indices: 76319393--76319435 Score: 86
Period size: 7 Copynumber: 6.1 Consensus size: 7
76319383 GATCCTTCGT
76319393 ATGTAAA
1 ATGTAAA
76319400 ATGTAAA
1 ATGTAAA
76319407 ATGTAAA
1 ATGTAAA
76319414 ATGTAAA
1 ATGTAAA
76319421 ATGTAAA
1 ATGTAAA
76319428 ATGTAAA
1 ATGTAAA
76319435 A
1 A
76319436 AAGGACCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.58, C:0.00, G:0.14, T:0.28
Consensus pattern (7 bp):
ATGTAAA
Found at i:76321836 original size:49 final size:49
Alignment explanation
Indices: 76321764--76321862 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
76321754 AGAATTGGCG
*
76321764 AGAAGTTGGCTTTAAATAGAGCAAACAAGATGAGTTGGTGAAAAAGAAA
1 AGAAGTTGGCTTTAAATAGAGCAAACAAGATGAGTTAGTGAAAAAGAAA
76321813 AGAAGTTGGCTTTAAATAGAGCAAACAAGATGAGTTAGTGAAAAAGAAA
1 AGAAGTTGGCTTTAAATAGAGCAAACAAGATGAGTTAGTGAAAAAGAAA
76321862 A
1 A
76321863 AGGTGATTAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.48, C:0.06, G:0.25, T:0.20
Consensus pattern (49 bp):
AGAAGTTGGCTTTAAATAGAGCAAACAAGATGAGTTAGTGAAAAAGAAA
Found at i:76322706 original size:27 final size:26
Alignment explanation
Indices: 76322472--76322783 Score: 259
Period size: 27 Copynumber: 11.6 Consensus size: 26
76322462 TAATAAAGAT
*
76322472 AAATTATCGAAATAATCC-CGATTTGTA
1 AAATTACCGAAAT-A-CCTCGATTTGTA
* * * *
76322499 AAATTACTGAAGTACCCCCAGTTTGTA
1 AAATTACCGAAATACCTCGA-TTTGTA
* * *
76322526 AAATTACCGAAATACCCCTAATTTATA
1 AAATTACCGAAATACCTC-GATTTGTA
* * *
76322553 AAATTATCGAAATACCCCTAATTTGTA
1 AAATTACCGAAATACCTC-GATTTGTA
* *
76322580 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATA-CCTCGATTTGTA
*
76322606 AAATTACTGAAATACACTCGATTTGTA
1 AAATTACCGAAATAC-CTCGATTTGTA
* * * * * *
76322633 AAATTATCTAAATACCCCTAATTTATG
1 AAATTACCGAAATACCTC-GATTTGTA
*
76322660 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATA-CCTCGATTTGTA
*
76322687 AAATTACCGAAATATTCTCGATTTGTA
1 AAATTACCGAAATA-CCTCGATTTGTA
* *
76322714 AAATTACCGAAACACTCTTGATTTGTA
1 AAATTACCGAAATAC-CTCGATTTGTA
*
76322741 AAATTACCGAAATACCTTTGATTTGTA
1 AAATTACCGAAATACC-TCGATTTGTA
* *
76322768 AAATTATCGATATACC
1 AAATTACCGAAATACC
76322784 CTTATAGTGT
Statistics
Matches: 236, Mismatches: 39, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.01
26 29 0.12
27 197 0.83
28 7 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (26 bp):
AAATTACCGAAATACCTCGATTTGTA
Found at i:76322745 original size:81 final size:80
Alignment explanation
Indices: 76322472--76322773 Score: 322
Period size: 81 Copynumber: 3.8 Consensus size: 80
76322462 TAATAAAGAT
* * * * *
76322472 AAATTATCGAAATAATCCC-GATTTGTAAAATTACTGAAGTACCC-CCAGTTTGTAAAATTACCG
1 AAATTATCGAAAT-ACCCCTAATTTGTAAAATTACCGAAATACCCTCGA-TTTGTAAAATTACCG
* * * *
76322535 AAATACCCCTAATTTATA
64 AAATAACTC-GATTTGTA
* * *
76322553 AAATTATCGAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGA-TTGTGAAATTACTGAA
1 AAATTATCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
76322617 ATACACTCGATTTGTA
66 ATA-ACTCGATTTGTA
* * * *
76322633 AAATTATCTAAATACCCCTAATTTATGAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAA
1 AAATTATCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
*
76322698 ATATTCTCGATTTGTA
66 ATA-ACTCGATTTGTA
* * * * * * *
76322714 AAATTACCGAAACACTCTTGATTTGTAAAATTACCGAAATACCTTTGATTTGTAAAATTA
1 AAATTATCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA
76322774 TCGATATACC
Statistics
Matches: 187, Mismatches: 30, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
80 70 0.37
81 115 0.61
82 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (80 bp):
AAATTATCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
ATAACTCGATTTGTA
Found at i:76322794 original size:27 final size:27
Alignment explanation
Indices: 76322522--76322825 Score: 112
Period size: 27 Copynumber: 11.3 Consensus size: 27
76322512 ACCCCCAGTT
* * *
76322522 TGTAAAATTACCGAAATACCCCTA-ATT
1 TGTAAAATTATCGAAATACCCTTATA-G
* * *
76322549 TATAAAATTATCGAAATACCCCTA-ATT
1 TGTAAAATTATCGAAATACCCTTATA-G
*
76322576 TGTAAAATTA-CTGAAATACCCTCGAT--
1 TGTAAAATTATC-GAAATACCCT-TATAG
* * * *
76322602 TGTGAAATTA-CTGAAATACACTCGAT-T
1 TGTAAAATTATC-GAAATACCCT-TATAG
* *
76322629 TGTAAAATTATCTAAATACCCCTA-A-
1 TGTAAAATTATCGAAATACCCTTATAG
* * * * *
76322654 TTTATGAAATTACCGAAACACCCTCGAT-T
1 TGTA--AAATTATCGAAATACCCT-TATAG
* ** * *
76322683 TGTAAAATTACCGAAATATTCTCGAT-T
1 TGTAAAATTATCGAAATACCCT-TATAG
* * * *
76322710 TGTAAAATTACCGAAACACTCTTGAT-T
1 TGTAAAATTATCGAAATACCCTT-ATAG
* * *
76322737 TGTAAAATTACCGAAATACCTTTGAT-T
1 TGTAAAATTATCGAAATACCCTT-ATAG
*
76322764 TGTAAAATTATCGATATACCCTTATAG
1 TGTAAAATTATCGAAATACCCTTATAG
* *
76322791 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTATAG
76322818 TGTAAAAT
1 TGTAAAAT
76322826 GACTGACATA
Statistics
Matches: 229, Mismatches: 35, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
25 3 0.01
26 28 0.12
27 192 0.84
28 3 0.01
29 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTATAG
Found at i:76322836 original size:27 final size:27
Alignment explanation
Indices: 76322764--76322855 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
76322754 ACCTTTGATT
* * * *
76322764 TGTAAAATTATCGATATACCCTTATAG
1 TGTAAAATGATCAAAATACCCTTGTAG
*
76322791 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATGATCAAAATACCCTTGTAG
* * *
76322818 TGTAAAATGA-CTGACATACCCCTGTAG
1 TGTAAAATGATC-AAAATACCCTTGTAG
*
76322845 GGTAAAATGAT
1 TGTAAAATGAT
76322856 TGTTTTTCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (27 bp):
TGTAAAATGATCAAAATACCCTTGTAG
Found at i:76325704 original size:28 final size:28
Alignment explanation
Indices: 76325664--76325727 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
76325654 GTTAGAAGTA
** * *
76325664 ATTGGGCTTGATGGGCCATATGAATGTG
1 ATTGGGCCCGATGGGCCATATGAACGAG
*
76325692 ATTGGGCCCGATGGGCCATGTGAACGAG
1 ATTGGGCCCGATGGGCCATATGAACGAG
76325720 ATTGGGCC
1 ATTGGGCC
76325728 TAAAGGGGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.20, C:0.17, G:0.38, T:0.25
Consensus pattern (28 bp):
ATTGGGCCCGATGGGCCATATGAACGAG
Found at i:76326301 original size:27 final size:27
Alignment explanation
Indices: 76326045--76326293 Score: 253
Period size: 27 Copynumber: 9.4 Consensus size: 27
76326035 TAATAAAGAG
*
76326045 AAATTATCGAAATAACCC-CGAATTGTA
1 AAATTATCGAAAT-ACCCTCGATTTGTA
*
76326072 AAATTATCGAAGTACCC-CTGATTTGT-
1 AAATTATCGAAATACCCTC-GATTTGTA
* *
76326098 -AA-TACCGAAATACCCTCGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
76326122 ATATTATTGAAATACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
76326149 AAATTATCGAAATA-CCTCCGATTTGTG
1 AAATTATCGAAATACCCT-CGATTTGTA
* *
76326176 AAATTA-CTGAAACACCCTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
76326203 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
76326230 AAAGTATCGAAACACACTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
76326257 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
76326284 AAATTATCGA
1 AAATTATCGA
76326294 TATGCCCTTA
Statistics
Matches: 187, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
23 4 0.02
24 13 0.07
25 4 0.02
26 23 0.12
27 139 0.74
28 4 0.02
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:76329853 original size:26 final size:26
Alignment explanation
Indices: 76329810--76329864 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
76329800 TATGATTAAA
* * * *
76329810 TTATTTATTATTATTTTTATTAAATT
1 TTATTTAATAATAATTTTATTAAAAT
76329836 TTATTTAATAATAATTTTATTAAAAT
1 TTATTTAATAATAATTTTATTAAAAT
76329862 TTA
1 TTA
76329865 AAAATAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
TTATTTAATAATAATTTTATTAAAAT
Found at i:76329859 original size:61 final size:59
Alignment explanation
Indices: 76329692--76329861 Score: 172
Period size: 61 Copynumber: 2.9 Consensus size: 59
76329682 TTTTTATAAT
* * * *
76329692 ATTATATATTATGATTTTTATT-AATTCATAATTTAATAATAA--TATTAAGAATGTTATTAA
1 ATTAT-TATTATTATTTTTATTAAATT--TTATTTAATAATAATTTATTAA-AATATGATTAA
* * *
76329752 ATTA-TA-TATTA-TTTTATTAAATTGTATTTAATAATACTTATGTTAAAATATGATTAA
1 ATTATTATTATTATTTTTATTAAATTTTATTTAATAATAATT-TATTAAAATATGATTAA
76329809 ATTATTTATTATTATTTTTATTAAATTTTATTTAATAATAATTTTATTAAAAT
1 ATTA-TTATTATTATTTTTATTAAATTTTATTTAATAATAA-TTTATTAAAAT
76329862 TTAAAAATAA
Statistics
Matches: 91, Mismatches: 10, Indels: 17
0.77 0.08 0.14
Matches are distributed among these distances:
55 11 0.12
56 7 0.08
57 21 0.23
58 7 0.08
59 2 0.02
60 9 0.10
61 32 0.35
62 2 0.02
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.54
Consensus pattern (59 bp):
ATTATTATTATTATTTTTATTAAATTTTATTTAATAATAATTTATTAAAATATGATTAA
Found at i:76330089 original size:16 final size:16
Alignment explanation
Indices: 76330018--76330089 Score: 92
Period size: 16 Copynumber: 4.6 Consensus size: 16
76330008 ACAACTGAAT
*
76330018 TATT-CATTACAGGTC
1 TATTCCATTACAGCTC
* *
76330033 TATTCTATTATAGCTC
1 TATTCCATTACAGCTC
*
76330049 TATTCCATTACAACTC
1 TATTCCATTACAGCTC
*
76330065 TATTACATTACAGCTC
1 TATTCCATTACAGCTC
76330081 TATTCCATT
1 TATTCCATT
76330090 CCTCCCAACC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
15 4 0.09
16 43 0.91
ACGTcount: A:0.28, C:0.24, G:0.06, T:0.43
Consensus pattern (16 bp):
TATTCCATTACAGCTC
Found at i:76330161 original size:27 final size:27
Alignment explanation
Indices: 76330131--76330182 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
76330121 AACTATCGAA
* *
76330131 ATACCCTTGTAGTGTAAAATGACTGAC
1 ATACCCCTGTAGGGTAAAATGACTGAC
76330158 ATACCCCTGTAGGGTAAAATGACTG
1 ATACCCCTGTAGGGTAAAATGACTG
76330183 TTTTGCCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
ATACCCCTGTAGGGTAAAATGACTGAC
Found at i:76334441 original size:15 final size:15
Alignment explanation
Indices: 76334393--76334472 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
76334383 GTATCTTGGG
*
76334393 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
* *
76334408 TCTCTTCATTCTGGA
1 TTTCTTTATTCTGGA
*
76334423 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
76334438 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
* *
76334453 TTTCTCTATTC-GGT
1 TTTCTTTATTCTGGA
76334467 TTTCTT
1 TTTCTT
76334473 CTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.17
15 42 0.79
16 2 0.04
ACGTcount: A:0.10, C:0.20, G:0.14, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:76334453 original size:30 final size:30
Alignment explanation
Indices: 76334384--76334480 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
76334374 CATAGTATCG
* * *
76334384 TATCTTGGGTTTCTTTATCCTGGATCTCT-
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
76334413 TCAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 T-ATCT-TGGATTTCTTTATTCTGGATTTCTC
* *
76334444 TATCTTGGATTTCTCTATTC-GGTTTTCTTC
1 TATCTTGGATTTCTTTATTCTGGATTTC-TC
76334474 TTATCTT
1 -TATCTT
76334481 TGTTCCATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
29 8 0.14
30 40 0.71
31 8 0.14
ACGTcount: A:0.10, C:0.20, G:0.14, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:76336906 original size:46 final size:46
Alignment explanation
Indices: 76336848--76337028 Score: 193
Period size: 46 Copynumber: 3.9 Consensus size: 46
76336838 TAGGATGTTT
*
76336848 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *** * *
76336894 GAGCGTCTGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-AC
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC
* * * *
76336940 TAGGCATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGC
1 GA-GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * * *
76336987 GAACGCCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76337029 GCGGGTTATA
Statistics
Matches: 107, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
46 73 0.68
47 34 0.32
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:76337009 original size:93 final size:93
Alignment explanation
Indices: 76336850--76337020 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
76336840 GGATGTTTGA
* * * * *
76336850 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
76336915 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
76336943 GCATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
76337008 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76337021 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:76338775 original size:11 final size:11
Alignment explanation
Indices: 76338759--76338784 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
76338749 ATTGCATGTA
76338759 TGATATTATTG
1 TGATATTATTG
76338770 TGATATTATTG
1 TGATATTATTG
76338781 TGAT
1 TGAT
76338785 GTGGGCTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:76341201 original size:43 final size:44
Alignment explanation
Indices: 76341097--76341214 Score: 138
Period size: 42 Copynumber: 2.8 Consensus size: 44
76341087 ACCACAACTA
* *
76341097 GGATGTTGGCATCGACT-TATGATTTACGTGTAAGACAATGTCTG
1 GGATGTTGGCATCGA-TATTTGATTTACGTGTAAAACAATGTCTG
**
76341141 GGATGTTGGCATC-ATATTTGATTT-CGTGTAAAACCCTGTCTG
1 GGATGTTGGCATCGATATTTGATTTACGTGTAAAACAATGTCTG
*
76341183 GGATAG-TGGCATCGATATTTGA-TTACATGTAA
1 GGAT-GTTGGCATCGATATTTGATTTACGTGTAA
76341215 GACCACGTTT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
42 29 0.45
43 23 0.35
44 13 0.20
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (44 bp):
GGATGTTGGCATCGATATTTGATTTACGTGTAAAACAATGTCTG
Found at i:76341228 original size:43 final size:43
Alignment explanation
Indices: 76341079--76341228 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
76341069 TTTGTGTTAT
** * *
76341079 CGTGTAAGACCACAACTAGGATGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGA-TATTTGA-TTA
* * *
76341123 CGTGTAAGACAATGTCTGGGATGTTGGCATC-ATATTTGATTT
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTA
*
76341165 CGTGTAAAACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAT-GTTGGCATCGATATTTGATTA
* *
76341208 CATGTAAGACCACGTTTGGGA
1 CGTGTAAGACCACGTCTGGGA
76341229 CGTTTACATT
Statistics
Matches: 87, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
42 28 0.32
43 32 0.37
44 27 0.31
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTA
Found at i:76352322 original size:80 final size:80
Alignment explanation
Indices: 76352218--76352442 Score: 278
Period size: 80 Copynumber: 2.8 Consensus size: 80
76352208 GCTCCTCGTT
* *
76352218 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
76352283 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * *
76352298 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCG
*
76352361 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * * *
76352377 CAAATGCCTTC-GAATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCC
76352440 GGA
64 GGA
76352443 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 3 0.02
79 53 0.43
80 66 0.53
81 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:76352402 original size:119 final size:120
Alignment explanation
Indices: 76352218--76352442 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
76352208 GCTCCTCGTT
* *
76352218 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGAACTTAACCCGG
* *
76352283 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
* **
76352338 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GAATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGAA-CTTAACC
* * *
76352399 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
76352443 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 5 0.05
119 64 0.70
120 22 0.24
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGAACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
Found at i:76352442 original size:40 final size:40
Alignment explanation
Indices: 76352218--76352442 Score: 239
Period size: 40 Copynumber: 5.7 Consensus size: 40
76352208 GCTCCTCGTT
* * *
76352218 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
76352258 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
* * *
76352298 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
76352338 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * * *
76352377 CAAATGCCTTC-GAATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
76352418 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76352443 CATCATTCAA
Statistics
Matches: 160, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 115 0.72
41 13 0.08
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:76353540 original size:13 final size:13
Alignment explanation
Indices: 76353522--76353546 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76353512 GGATGAGCAT
76353522 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
76353535 TTTTTTTTCTTT
1 TTTTTTTTCTTT
76353547 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:76359245 original size:15 final size:15
Alignment explanation
Indices: 76359197--76359245 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
76359187 GTGTTGTAAA
76359197 TTGGATTT-TCTTATC
1 TTGGATTTCT-TTATC
* *
76359212 ATGAATTTCTTTATC
1 TTGGATTTCTTTATC
*
76359227 TTGGATTTCTTTATT
1 TTGGATTTCTTTATC
76359242 TTGG
1 TTGG
76359246 GCTTCTCCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
15 27 0.96
16 1 0.04
ACGTcount: A:0.16, C:0.10, G:0.14, T:0.59
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:76364794 original size:40 final size:41
Alignment explanation
Indices: 76364714--76364861 Score: 144
Period size: 41 Copynumber: 3.6 Consensus size: 41
76364704 GAGCTTGGTC
*
76364714 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAGTT
1 TCGAAGGGCTTTAGAGCCAGTGCTAATAACCAAACTTAGTT
* **
76364755 TCGAAGGGCTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGCTTTAGAGCCAGTGCTAATAACCAAACTTAGTT
* * * *
76364795 CCGAAGGGCCTTCA-AGCCAGTGGTCTAAT--CCAAGCTTGGTCT
1 TCGAAGGG-CTTTAGAGCCAGT-G-CTAATAACCAAACTTAGT-T
*
76364837 T-GAAGGGCTTTTGAGCCAGTGCTAA
1 TCGAAGGGCTTTAGAGCCAGTGCTAA
76364862 GAATCGGGCT
Statistics
Matches: 87, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
39 4 0.05
40 33 0.38
41 46 0.53
42 1 0.01
43 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTAGAGCCAGTGCTAATAACCAAACTTAGTT
Found at i:76372575 original size:49 final size:49
Alignment explanation
Indices: 76372519--76373123 Score: 975
Period size: 49 Copynumber: 12.6 Consensus size: 49
76372509 TATTTGAATA
76372519 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
76372568 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
76372617 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
76372666 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
76372713 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
76372762 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
76372811 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
76372858 AATGTGAAAGTGTATATATATGTGATAAGG-CTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCAATGTGATG
*
76372907 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
76372956 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
76373003 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * *
76373050 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
76373097 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
76373124 TCCCGAAGGG
Statistics
Matches: 528, Mismatches: 20, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
47 233 0.44
48 2 0.00
49 291 0.55
50 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:76372707 original size:145 final size:145
Alignment explanation
Indices: 76372519--76373123 Score: 1038
Period size: 145 Copynumber: 4.2 Consensus size: 145
76372509 TATTTGAATA
*
76372519 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
76372584 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
76372649 TAATGGCCGATGTGATG
129 TAATGGCCGATGTGATG
76372666 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
76372731 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
76372796 ATGGCCGATGTGATG
131 ATGGCCGATGTGATG
76372811 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
76372876 TATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
76372941 ATGGCCGATGTGATG
131 ATGGCCGATGTGATG
* *
76372956 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * *
76373019 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* *
76373082 GTGGCCAATGTGATG
131 ATGGCCGATGTGATG
* *
76373097 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
76373124 TCCCGAAGGG
Statistics
Matches: 442, Mismatches: 16, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
141 55 0.12
143 44 0.10
145 331 0.75
147 12 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
ATGGCCGATGTGATG
Found at i:76377793 original size:41 final size:41
Alignment explanation
Indices: 76377622--76377781 Score: 177
Period size: 41 Copynumber: 3.9 Consensus size: 41
76377612 GGGTCTAAAT
76377622 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * *
76377663 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
76377703 CC-AGACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
76377744 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
76377782 GAATCGGGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
39 6 0.06
40 32 0.32
41 56 0.56
42 3 0.03
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:76382220 original size:38 final size:38
Alignment explanation
Indices: 76382169--76382355 Score: 277
Period size: 38 Copynumber: 4.9 Consensus size: 38
76382159 GTAAAAGAAG
* * *
76382169 AAATCCGGACTTAAAGCCCACAGGCTATATGCTAGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
* *
76382207 AAATCCGGACTTAAAGTCCGTAGGCTATATGATGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
* **
76382245 AAATCCGGACTTAAAGTCTGTGGGCTATATGCTGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
*
76382283 AAATCTGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
76382321 AAATCCGGACTTAAAGTCCGCAGGCTA-AGTGCTGG
1 AAATCCGGACTTAAAGTCCGCAGGCTATA-TGCTGG
76382356 TAAAATATCC
Statistics
Matches: 135, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
37 1 0.01
38 134 0.99
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (38 bp):
AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
Found at i:76388772 original size:38 final size:38
Alignment explanation
Indices: 76388721--76388919 Score: 292
Period size: 38 Copynumber: 5.2 Consensus size: 38
76388711 ATAAAAGAAG
*
76388721 AAATCTGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
* *
76388759 AAATCCAGACTTAAAGTCCACAGGCTATATGCTGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
*
76388797 AAATCTGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
* **
76388835 AAATTCGGACTTAAAGTCTACAGGCTATATGCTGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
* *
76388873 AAATCTGGACTTAAAGTCCGCAGGCTA-AGTGCTGGAAA
1 AAATCCGGACTTAAAGTCCGCAGGCTATA-TGCTGGAAT
76388911 AATATCCGG
1 AA-ATCCGG
76388920 GTTAAGGACC
Statistics
Matches: 143, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
37 1 0.01
38 137 0.96
39 5 0.03
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (38 bp):
AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
Found at i:76388847 original size:76 final size:76
Alignment explanation
Indices: 76388721--76388913 Score: 336
Period size: 76 Copynumber: 2.6 Consensus size: 76
76388711 ATAAAAGAAG
76388721 AAATCTGGACTTAAAGTCCGCAGGCTATATGCTGGAATAAATCCAGACTTAAAGTCCACAGGCTA
1 AAATCTGGACTTAAAGTCCGCAGGCTATATGCTGGAATAAATCCAGACTTAAAGTCCACAGGCTA
76388786 TATGCTGGAAT
66 TATGCTGGAAT
* * *
76388797 AAATCTGGACTTAAAGTCCGCAGGCTATATGCTGGAATAAATTCGGACTTAAAGTCTACAGGCTA
1 AAATCTGGACTTAAAGTCCGCAGGCTATATGCTGGAATAAATCCAGACTTAAAGTCCACAGGCTA
76388862 TATGCTGGAAT
66 TATGCTGGAAT
76388873 AAATCTGGACTTAAAGTCCGCAGGCTA-AGTGCTGGAA-AAAT
1 AAATCTGGACTTAAAGTCCGCAGGCTATA-TGCTGGAATAAAT
76388914 ATCCGGGTTA
Statistics
Matches: 113, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
75 5 0.04
76 108 0.96
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (76 bp):
AAATCTGGACTTAAAGTCCGCAGGCTATATGCTGGAATAAATCCAGACTTAAAGTCCACAGGCTA
TATGCTGGAAT
Found at i:76390455 original size:49 final size:49
Alignment explanation
Indices: 76390389--76390519 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 49
76390379 TGTTGTGTGT
* *
76390389 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGAGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * *
76390438 CAGTGTAAGGCTTGTCTGAGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGAGACATGGCATCGACCTCGATAGATGAAAGC
* * * * *
76390487 CAGTGTAAGAACTATTTGGGACACGGCATCGAC
1 CAGTGTAAGACCTGTCTGAGACATGGCATCGAC
76390520 TTTAATGTGC
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 1 0.02
49 65 0.98
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGAGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:76392668 original size:25 final size:25
Alignment explanation
Indices: 76392620--76392669 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
76392610 AATAAAATTT
* * *
76392620 CACAATAGACTCAATTGCATATATC
1 CACAATAGACTAAATTACAGATATC
*
76392645 CACAATAGACTAAATTATAGATATC
1 CACAATAGACTAAATTACAGATATC
76392670 ATTTATATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (25 bp):
CACAATAGACTAAATTACAGATATC
Found at i:76395398 original size:37 final size:37
Alignment explanation
Indices: 76395351--76395459 Score: 141
Period size: 36 Copynumber: 3.0 Consensus size: 37
76395341 ACCTAAAGAC
76395351 GCCAAATGCTCATAAGAGCTTAACCACCCGATAACAT
1 GCCAAATGCTCATAAGAGCTTAACCACCCGATAACAT
* * * **
76395388 GCCAATTGCTCCTAAGAGC-TAGTCCAAACGA-AACAT
1 GCCAAATGCTCATAAGAGCTTA-ACCACCCGATAACAT
*
76395424 GCCAAATGCTCATAAGAGCTGAACCACCCGATAACA
1 GCCAAATGCTCATAAGAGCTTAACCACCCGATAACA
76395460 CACCAAAACA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
36 30 0.52
37 28 0.48
ACGTcount: A:0.38, C:0.29, G:0.16, T:0.17
Consensus pattern (37 bp):
GCCAAATGCTCATAAGAGCTTAACCACCCGATAACAT
Found at i:76395405 original size:73 final size:73
Alignment explanation
Indices: 76395272--76395465 Score: 255
Period size: 73 Copynumber: 2.7 Consensus size: 73
76395262 ATCCATTTGA
* * * * *
76395272 AAACACACCAAATGCACATAAGACCTCATCCACCCGATAACACACCAATTGCTTTCAAGAGCTAG
1 AAACACGCCAAATGCTCATAAGAGCTCAACCACCCGATAACACACCAATTGCTCTCAAGAGCTAG
* *
76395337 TCCAACCT
66 TCCAAACG
* * **
76395345 AAAGACGCCAAATGCTCATAAGAGCTTAACCACCCGATAACATGCCAATTGCTC-CTAAGAGCTA
1 AAACACGCCAAATGCTCATAAGAGCTCAACCACCCGATAACACACCAATTGCTCTC-AAGAGCTA
76395409 GTCCAAACG
65 GTCCAAACG
* *
76395418 AAACATGCCAAATGCTCATAAGAGCTGAACCACCCGATAACACACCAA
1 AAACACGCCAAATGCTCATAAGAGCTCAACCACCCGATAACACACCAA
76395466 AACAAGGAGT
Statistics
Matches: 104, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
72 1 0.01
73 103 0.99
ACGTcount: A:0.39, C:0.31, G:0.13, T:0.16
Consensus pattern (73 bp):
AAACACGCCAAATGCTCATAAGAGCTCAACCACCCGATAACACACCAATTGCTCTCAAGAGCTAG
TCCAAACG
Found at i:76395434 original size:36 final size:36
Alignment explanation
Indices: 76395328--76395443 Score: 135
Period size: 36 Copynumber: 3.2 Consensus size: 36
76395318 AATTGCTTTC
* * *
76395328 AAGAGCTAGTCCAACCTAAAGACGCCAAATGCTCAT
1 AAGAGCTAGTCCAACCGAAACATGCCAAATGCTCAT
* * * *
76395364 AAGAGCTTA-ACCACCCGATAACATGCCAATTGCTCCT
1 AAGAGC-TAGTCCAACCGA-AACATGCCAAATGCTCAT
*
76395401 AAGAGCTAGTCCAAACGAAACATGCCAAATGCTCAT
1 AAGAGCTAGTCCAACCGAAACATGCCAAATGCTCAT
76395437 AAGAGCT
1 AAGAGCT
76395444 GAACCACCCG
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
36 37 0.57
37 28 0.43
ACGTcount: A:0.38, C:0.28, G:0.16, T:0.18
Consensus pattern (36 bp):
AAGAGCTAGTCCAACCGAAACATGCCAAATGCTCAT
Found at i:76398727 original size:25 final size:25
Alignment explanation
Indices: 76398693--76398745 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
76398683 TGCACCACAC
*
76398693 GGCCAGAGACACATTTGTGTGCCTT
1 GGCCAGAGACACATCTGTGTGCCTT
* * *
76398718 GGCCGGAGACACGTCTGTTTGCCTT
1 GGCCAGAGACACATCTGTGTGCCTT
76398743 GGC
1 GGC
76398746 TATGGGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.26
Consensus pattern (25 bp):
GGCCAGAGACACATCTGTGTGCCTT
Found at i:76399525 original size:16 final size:17
Alignment explanation
Indices: 76399497--76399528 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76399487 ATTAACACAC
76399497 AGTAAGCTTCATAGTTT
1 AGTAAGCTTCATAGTTT
76399514 AGTAAG-TTCATAGTT
1 AGTAAGCTTCATAGTT
76399529 GAGCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (17 bp):
AGTAAGCTTCATAGTTT
Found at i:76399959 original size:94 final size:94
Alignment explanation
Indices: 76399812--76399994 Score: 278
Period size: 94 Copynumber: 1.9 Consensus size: 94
76399802 GCCCTTAGCC
* * *
76399812 AAATCAAGATAACTTATTCCGGAGTACCTATACCATGGTCTATAGCCAAATCAAGGTATCTCCTC
1 AAATCAAGATAACATATCCCGGAGTACCTATACCATGGTCTATAGCCAAATCAAGGTAACTCCTC
*
76399877 TCAAAAAACCTTAATCATGGCTCGAAGAA
66 TCAAAAAACCTAAATCATGGCTCGAAGAA
* *
76399906 AAATCAAGATAACATATCCCGGAGTACTTATACCATGG-CTCGTAGCCAAATCAAGGTAACTCCT
1 AAATCAAGATAACATATCCCGGAGTACCTATACCATGGTCT-ATAGCCAAATCAAGGTAACTCCT
* *
76399970 TTCAAAATACCTAAATCATGGCTCG
65 CTCAAAAAACCTAAATCATGGCTCG
76399995 TAGTCATGGC
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 2 0.03
94 78 0.98
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (94 bp):
AAATCAAGATAACATATCCCGGAGTACCTATACCATGGTCTATAGCCAAATCAAGGTAACTCCTC
TCAAAAAACCTAAATCATGGCTCGAAGAA
Found at i:76399990 original size:47 final size:47
Alignment explanation
Indices: 76399854--76399997 Score: 128
Period size: 47 Copynumber: 3.1 Consensus size: 47
76399844 CCATGGTCTA
* * *
76399854 TAGCCAAATCAAGGTATCTCCTCTCAAAAAACCTTAATCATGGCTCG
1 TAGCCAAATCAAGGTAACTCCTCTCAAAATACCTAAATCATGGCTCG
* ** * * * ** * * * *
76399901 AAGAAAAATCAAGATAACAT-ATCCCGGAGTACTTATACCATGGCTCG
1 TAGCCAAATCAAGGTAAC-TCCTCTCAAAATACCTAAATCATGGCTCG
*
76399948 TAGCCAAATCAAGGTAACTCCTTTCAAAATACCTAAATCATGGCTCG
1 TAGCCAAATCAAGGTAACTCCTCTCAAAATACCTAAATCATGGCTCG
76399995 TAG
1 TAG
76399998 TCATGGCCCG
Statistics
Matches: 67, Mismatches: 28, Indels: 4
0.68 0.28 0.04
Matches are distributed among these distances:
46 1 0.01
47 65 0.97
48 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (47 bp):
TAGCCAAATCAAGGTAACTCCTCTCAAAATACCTAAATCATGGCTCG
Found at i:76401133 original size:13 final size:13
Alignment explanation
Indices: 76401115--76401139 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76401105 ACAAACGATA
76401115 AAATTTTCACACG
1 AAATTTTCACACG
76401128 AAATTTTCACAC
1 AAATTTTCACAC
76401140 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:76404723 original size:40 final size:40
Alignment explanation
Indices: 76404679--76404860 Score: 267
Period size: 40 Copynumber: 4.6 Consensus size: 40
76404669 GCCACTAGCT
* * *
76404679 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
76404719 CAAATGCCTTCGAGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
76404758 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
** * *
76404798 CAAACACCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
76404838 CGAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
76404861 AGAATTAGCC
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 36 0.28
40 94 0.72
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:76404777 original size:79 final size:80
Alignment explanation
Indices: 76404679--76404860 Score: 267
Period size: 79 Copynumber: 2.3 Consensus size: 80
76404669 GCCACTAGCT
* * * **
76404679 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGAGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACACCTTCGAGACTTAGCCCGG
76404744 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* *
76404758 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACACCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACACCTTCGAGACTTAGCCCGG
* *
76404823 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
76404838 CGAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
76404861 AGAATTAGCC
Statistics
Matches: 92, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 58 0.63
80 34 0.37
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACACCTTCGAGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:76404884 original size:40 final size:39
Alignment explanation
Indices: 76404679--76404902 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 39
76404669 GCCACTAGCT
** *
76404679 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAG-AACTCGCA
* * *
76404719 CAAATGCCTTCGAGACTTAGCCCG-GTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATAT-AGAACTCGCA
*
76404758 CAAATGCCTTCGGGACTTAGCCCGGATATA-ATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGA-A-CTCGCA
** * *
76404798 CAAACACCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAG-AACTCGCA
* * * *
76404838 CGAATGCCTTCGGGACTTAGCCCAGAAT-TAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCC-GAATATAG-AACTCGCA
76404878 CAAATG-CTCTCGGGACTTAGCCCGA
1 CAAATGCCT-TCGGGACTTAGCCCGA
76404903 TTATCATCTG
Statistics
Matches: 157, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 39 0.25
40 113 0.72
41 3 0.02
42 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGAACTCGCA
Found at i:76404891 original size:80 final size:77
Alignment explanation
Indices: 76404679--76404901 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 77
76404669 GCCACTAGCT
** * *
76404679 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGAGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAG--ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
76404744 TATAATAACTCGCA
64 TATAATAACTCGCA
* **
76404758 CAAATGCCTTCGGGACTTAGCCCGGATATAATAG-CTCGCACAAACACCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCC-GA-AT-ATAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
* *
76404822 GATATAGTAGCTCGCA
63 G-TATAATAACTCGCA
* *
76404838 CGAATGCCTTCGGGACTTAGCCCAGAAT-TAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC-GAATATAG--ACTAGCACAAATGCCT-TCGGGACTTAGCCC
76404901 G
62 G
76404902 ATTATCATCT
Statistics
Matches: 122, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
77 3 0.02
79 54 0.44
80 60 0.49
81 1 0.01
82 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA
TAATAACTCGCA
Found at i:76412893 original size:40 final size:40
Alignment explanation
Indices: 76412711--76412893 Score: 264
Period size: 39 Copynumber: 4.7 Consensus size: 40
76412701 GCCATTAGCT
* *
76412711 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
76412751 CAAATGCCTTCGGGACTTAGCCCAG-TATAATAACTCG-A
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
76412789 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
76412829 CAAA-CCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
76412868 CAAATGCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76412894 AGTAGCCACT
Statistics
Matches: 131, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 25 0.19
39 58 0.44
40 48 0.37
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:76412912 original size:40 final size:39
Alignment explanation
Indices: 76412711--76412931 Score: 214
Period size: 40 Copynumber: 5.6 Consensus size: 39
76412701 GCCATTAGCT
* * *
76412711 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-AATAGCAACTCGCA
* * **
76412751 CAAATGCCTTCGGGACTTAGCCCAGTATAATAACTCG-A
1 CAAATGCCTTCGGGACTTAGCCCGGAATAGCAACTCGCA
** *
76412789 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGCAACTCGCA
* * *
76412829 CAAA-CCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGCAACTCGCA
* * * *
76412868 CAAATGCCTTCGAGACTTAGCCCGGAAGTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGCAACTCGCA
*
76412908 CAAATG-CTCTCGAGACTTAGCCCG
1 CAAATGCCT-TCGGGACTTAGCCCG
76412932 ATTATCATCC
Statistics
Matches: 161, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 25 0.16
39 60 0.37
40 76 0.47
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGCAACTCGCA
Found at i:76418963 original size:25 final size:25
Alignment explanation
Indices: 76418934--76418985 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
76418924 TAAACAAATT
76418934 TTATGCAATATCAAAGCATATAACA
1 TTATGCAATATCAAAGCATATAACA
76418959 TTATGCAATATCAAAGCATATAACA
1 TTATGCAATATCAAAGCATATAACA
76418984 TT
1 TT
76418986 CATTTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (25 bp):
TTATGCAATATCAAAGCATATAACA
Found at i:76428506 original size:54 final size:54
Alignment explanation
Indices: 76428337--76428539 Score: 187
Period size: 54 Copynumber: 3.8 Consensus size: 54
76428327 CCTTTTTAAC
* * * * *
76428337 CTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGA-A
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAATA
* * * * * *
76428390 CTCACC-TTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTG-CTTATCATA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAATA
* * * * * * *
76428442 GTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTCGCCTTGTAATA
1 -CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAATA
** *
76428497 CTTACCAATGCCATGCCTTTCCATGGTCTTACTTGGTATCCTT
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
76428540 AAACCCTAAT
Statistics
Matches: 116, Mismatches: 30, Indels: 7
0.76 0.20 0.05
Matches are distributed among these distances:
51 6 0.05
52 32 0.28
53 8 0.07
54 63 0.54
55 7 0.06
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.39
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAATA
Found at i:76445035 original size:43 final size:43
Alignment explanation
Indices: 76444965--76445072 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 43
76444955 ATACATATCG
* * * * *
76444965 ATGCCACTGTCCCAAACAAGGTCTTACACGAAAT-TATAATACGA
1 ATGCCAATGTCCCAGACATGGTATTACACGAAATCT-CAATAC-A
* *
76445009 A-GCCAATGTCCCAGATATGGTATTACACGTAATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTATTACACGAAATCTCAATACA
*
76445051 ATGCCAATGTCTCAGACATGGT
1 ATGCCAATGTCCCAGACATGGT
76445073 CTTTCATGTA
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
42 2 0.04
43 49 0.92
44 2 0.04
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTATTACACGAAATCTCAATACA
Found at i:76450100 original size:27 final size:26
Alignment explanation
Indices: 76450059--76450170 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
76450049 AGGAAGCGTC
*
76450059 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
76450086 CTAGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
76450113 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
76450141 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
76450167 CTGG
1 CTGG
76450171 AAGCCATGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 17 0.23
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:76450163 original size:54 final size:54
Alignment explanation
Indices: 76450059--76450170 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
76450049 AGGAAGCGTC
*
76450059 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTATT
* * * * *
76450113 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTATT
76450167 CTGG
1 CTGG
76450171 AAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTATT
Found at i:76457971 original size:27 final size:26
Alignment explanation
Indices: 76457931--76458042 Score: 98
Period size: 27 Copynumber: 4.2 Consensus size: 26
76457921 AGGAAGCGTC
* *
76457931 CTGGCGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
76457958 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
76457985 CTGGTGGCTCTGCAACGATTATATGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
76458013 TTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
76458039 CTGG
1 CTGG
76458043 CAGCCATGCC
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 6 0.09
27 47 0.69
28 15 0.22
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:76461886 original size:26 final size:25
Alignment explanation
Indices: 76461857--76461914 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
76461847 ATAAAACCTA
*
76461857 AAAATGAAATAGTA-TTAAAGGAAAAT
1 AAAAT-AAAAAGTACTTAAA-GAAAAT
*
76461883 AAAATAAAAAGTACTTAAAGAAGAT
1 AAAATAAAAAGTACTTAAAGAAAAT
76461908 -AAATAAA
1 AAAATAAA
76461915 GATAAAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.24
25 12 0.41
26 10 0.34
ACGTcount: A:0.66, C:0.02, G:0.12, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTACTTAAAGAAAAT
Found at i:76461909 original size:25 final size:25
Alignment explanation
Indices: 76461857--76461921 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 25
76461847 ATAAAACCTA
*
76461857 AAAATGAAATAGTATTAAAGGAAAAT
1 AAAAT-AAAAAGTATTAAAGGAAAAT
76461883 AAAATAAAAAGTACTTAAAGAAGATAAAT
1 AAAATAAAAAGTA-TTAAAG--GA-AAAT
76461912 AAAGATAAAA
1 AAA-ATAAAA
76461922 GTGAAAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 7 0.21
26 11 0.33
28 2 0.06
29 7 0.21
30 6 0.18
ACGTcount: A:0.66, C:0.02, G:0.12, T:0.20
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAAGGAAAAT
Found at i:76477547 original size:43 final size:44
Alignment explanation
Indices: 76477389--76477555 Score: 164
Period size: 43 Copynumber: 3.9 Consensus size: 44
76477379 CATAAGCTCG
* * * * *
76477389 TACAATGCC-ATATCCCAGATATGGTCTTAAATGTAA-ATAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTACAA
* * * * * *
76477430 TATCGATGCCACTATCCCAGACAAGGTCTTACACGAAAT-TATAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTACAA
**
76477474 TATGATGCCAATGTCCCAGACATGGTCTTACACGTAATCT-CAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTACAA
*
76477517 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
76477556 ACATCTCGAT
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 92 0.88
44 4 0.04
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (44 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTACAA
Found at i:76481764 original size:25 final size:25
Alignment explanation
Indices: 76481736--76481785 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
76481726 CATGTGTAAA
* * *
76481736 TAATGTGATGTGTATTTTAATGCTT
1 TAATGTGATATGAATTTAAATGCTT
*
76481761 TAATGTTATATGAATTTAAATGCTT
1 TAATGTGATATGAATTTAAATGCTT
76481786 ATTTGCTATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (25 bp):
TAATGTGATATGAATTTAAATGCTT
Found at i:76485040 original size:28 final size:28
Alignment explanation
Indices: 76485009--76485090 Score: 116
Period size: 28 Copynumber: 3.0 Consensus size: 28
76484999 TAGCCCACTG
*
76485009 GGCCCAATATCATTCATATGGCCCATTA
1 GGCCCAATATCATTTATATGGCCCATTA
76485037 GGCCCAA-ATCACATTTATATGG-CCATTA
1 GGCCCAATAT--CATTTATATGGCCCATTA
76485065 GGCCCAATA-CATTTATATGGCCCATT
1 GGCCCAATATCATTTATATGGCCCATT
76485091 GCCAATCACA
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
26 11 0.22
27 7 0.14
28 20 0.41
29 11 0.22
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
GGCCCAATATCATTTATATGGCCCATTA
Found at i:76492870 original size:41 final size:41
Alignment explanation
Indices: 76492811--76492957 Score: 206
Period size: 41 Copynumber: 3.6 Consensus size: 41
76492801 GGATTTAAAA
76492811 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
*
76492852 CTGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAA-
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
* * * * * * * *
76492892 CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATAAT
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
76492933 CCGAGCTTGGTCTCGAAGGGCTTTT
1 CCGAGCTTGGTCTCGAAGGGCTTTT
76492958 TAAGTCAGCG
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.35
41 58 0.65
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
Found at i:76499274 original size:40 final size:40
Alignment explanation
Indices: 76499176--76499345 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
76499166 TCCTCGTTCA
* * * * *
76499176 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACC
* *
76499216 -ATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACC
* * *
76499255 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTAGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACC
* * * *
76499295 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACC
*
76499335 AAGGCCTTCGG
1 AATGCCTTCGG
76499346 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
39 33 0.30
40 77 0.70
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACC
Found at i:76499386 original size:80 final size:80
Alignment explanation
Indices: 76499218--76499398 Score: 186
Period size: 80 Copynumber: 2.3 Consensus size: 80
76499208 CTCACACCAT
* * * * *
76499218 GCCTTCGGGACGTAACCCGGATTTAACAACTCGCACCAATGCCTTCGGGACTTAACCCGGCTTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
*
76499283 ATAACTAGCACGAAT
66 ATAACTAGCACGAAA
* ** * **
76499298 GCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* **
76499362 ATTCGCTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
76499378 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
76499399 CAGCATTCAA
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 3 0.04
80 73 0.89
81 6 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:76507160 original size:40 final size:40
Alignment explanation
Indices: 76507062--76507324 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
76507052 TCCTCGTTCA
* * * * *
76507062 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76507101 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76507141 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76507181 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
76507221 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
76507261 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
76507301 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76507325 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:76510147 original size:56 final size:55
Alignment explanation
Indices: 76510051--76510162 Score: 143
Period size: 56 Copynumber: 2.0 Consensus size: 55
76510041 TGGGAGCACC
* * ** *
76510051 CCAAGGCGAAAACTCGATCTTGCAAATATTTTATCGGTTAATTCTTGCAACTGAG
1 CCAAGGCGAAAACTCGATCATGCAAATACTCGATCAGTTAATTCTTGCAACTGAG
* * *
76510106 CCAAGGTGAAAAACTCGATCATGCAAATCCTCGATCAGTTAATTGTTGCAACTGAG
1 CCAAGGCG-AAAACTCGATCATGCAAATACTCGATCAGTTAATTCTTGCAACTGAG
76510162 C
1 C
76510163 TTTTAGTTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
55 7 0.15
56 41 0.85
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (55 bp):
CCAAGGCGAAAACTCGATCATGCAAATACTCGATCAGTTAATTCTTGCAACTGAG
Found at i:76511455 original size:6 final size:6
Alignment explanation
Indices: 76511443--76511495 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
76511433 AAGAAATATT
* * *
76511443 ATCAGA ATTAGA ATCAGA ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
76511492 ATCA
1 ATCA
76511496 AGATGTGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 3 0.08
6 32 0.82
7 2 0.05
8 2 0.05
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (6 bp):
ATCAGA
Found at i:76511678 original size:27 final size:26
Alignment explanation
Indices: 76511634--76511694 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
76511624 CTACTCAGTT
*
76511634 ATCAGATATTATGACAGAGTCACCAA
1 ATCAGATATTATGACAGAGCCACCAA
* * *
76511660 ATACAGATATTGTGGCAGAGCCACCAG
1 AT-CAGATATTATGACAGAGCCACCAA
76511687 ATCAGATA
1 ATCAGATA
76511695 ATGTAGGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (26 bp):
ATCAGATATTATGACAGAGCCACCAA
Found at i:76512434 original size:27 final size:27
Alignment explanation
Indices: 76512352--76512436 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
76512342 GGGGCAAAAT
* * *
76512352 GTAATT-TACCCCACA-AAGTATCTCA
1 GTAATTCTACCCTACAGAGGTATTTCA
* *
76512377 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGAGGTATTTCA
*
76512404 GTAATTCTACCCTACAGAGGTATTTCG
1 GTAATTCTACCCTACAGAGGTATTTCA
76512431 GTAATT
1 GTAATT
76512437 TTACAATCGA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
25 6 0.12
26 8 0.16
27 36 0.72
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGAGGTATTTCA
Found at i:76512509 original size:24 final size:24
Alignment explanation
Indices: 76512422--76512511 Score: 76
Period size: 26 Copynumber: 3.7 Consensus size: 24
76512412 ACCCTACAGA
*
76512422 GGTATTTCGGTAATTTTACAA-TCG
1 GGTATTTCAGTAATTTTACAACT-G
* * *
76512446 ATGGTATTTCGGTAATTTTATAAACGG
1 --GGTATTTCAGTAATTTTA-CAACTG
* *
76512473 GGCATTTGA-TAATTTTACAACTG
1 GGTATTTCAGTAATTTTACAACTG
76512496 GGTATTTCAGTAATTT
1 GGTATTTCAGTAATTT
76512512 GGTAACTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
23 11 0.21
24 14 0.27
25 6 0.12
26 18 0.35
27 3 0.06
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (24 bp):
GGTATTTCAGTAATTTTACAACTG
Found at i:76528244 original size:39 final size:39
Alignment explanation
Indices: 76528127--76528428 Score: 387
Period size: 39 Copynumber: 7.6 Consensus size: 39
76528117 GCTCCTCGTT
* * *
76528127 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
* * * *
76528167 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
76528207 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
76528246 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
76528285 CAAATGCCTTCAGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
76528324 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
76528363 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
*
76528404 TAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
76528429 CATCATTCAA
Statistics
Matches: 240, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
39 148 0.62
40 79 0.33
41 13 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:76536180 original size:39 final size:39
Alignment explanation
Indices: 76536164--76536398 Score: 296
Period size: 39 Copynumber: 5.9 Consensus size: 39
76536154 TGCCCGGTTA
* * *
76536164 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT
* *
76536204 TAATAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
76536243 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
* *
76536282 TAGTATCTCACACAAATGCCTTCAGGCTTAGCCCGGAAT
1 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
* *
76536321 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATAT
1 TAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-AT
* *
76536362 T-GTCA-CTTAGCATAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGT-ATC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
76536399 CATCATTCAA
Statistics
Matches: 175, Mismatches: 15, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
39 108 0.62
40 56 0.32
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
Found at i:76541626 original size:64 final size:64
Alignment explanation
Indices: 76541546--76541666 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
76541536 CATTAGTTAT
* *
76541546 ATATGTACTTACCATACATGCAATATTAAAGCCTTTAAAATATG-GTACATATTGCATAATTTGC
1 ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATA-GAGTACATATTGCATAATTTGC
*
76541610 ATATGAACTTACCATACATGCAATATTTAAGCATTTAAAATAGAGTACATATTGCAT
1 ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATAGAGTACATATTGCAT
76541667 TACTCGCATA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
63 1 0.02
64 52 0.98
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (64 bp):
ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATAGAGTACATATTGCATAATTTGC
Found at i:76541676 original size:64 final size:64
Alignment explanation
Indices: 76541546--76541686 Score: 194
Period size: 64 Copynumber: 2.2 Consensus size: 64
76541536 CATTAGTTAT
* * * *
76541546 ATATGTACTTACCATACATGCAATATTAAAGCCTTTAAAATATGGTACATATTGCATAATTTGC
1 ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATATGGTACATATTGCATAACTCGC
* *
76541610 ATATGAACTTACCATACATGCAATATTTAAGCATTTAAAATA-GAGTACATATTGCATTACTCGC
1 ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATATG-GTACATATTGCATAACTCGC
* *
76541674 ATACGAGCTTACC
1 ATATGAACTTACC
76541687 TCGATACCAA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 1 0.01
64 67 0.99
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (64 bp):
ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATATGGTACATATTGCATAACTCGC
Found at i:76543670 original size:43 final size:43
Alignment explanation
Indices: 76543622--76543736 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 43
76543612 ATGTGATTAA
* *
76543622 ATGTAAGACCATGTCTAGGACATTGGTATCGTTATTCAAT-TT
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTTATTCAATCTT
* *
76543664 CGTGTAAGACCATGTCTGGGACATTGGCATCGTTATTCGATCTT
1 -ATGTAAGACCATGTCTGGGACATTGGCATCGTTATTCAATCTT
* *
76543708 ATGTAAGACCTTGTCTGGGACAGTGGCAT
1 ATGTAAGACCATGTCTGGGACATTGGCAT
76543737 TGATATGTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
43 62 0.97
44 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGTTATTCAATCTT
Found at i:76543755 original size:43 final size:42
Alignment explanation
Indices: 76543622--76543770 Score: 131
Period size: 43 Copynumber: 3.5 Consensus size: 42
76543612 ATGTGATTAA
* * * * * *
76543622 ATGTAAGACCATGTCTAGGACATTGGTATCGTTATTCAATTT
1 ATGTAAGACCATGTCTGGGACAGTGGCATCGATATTCGATCT
* * *
76543664 CGTGTAAGACCATGTCTGGGACATTGGCATCGTTATTCGATCTT
1 -ATGTAAGACCATGTCTGGGACAGTGGCATCGATATTCGATC-T
* *
76543708 ATGTAAGACCTTGTCTGGGACAGTGGCATTGATATGTGACGA-C-
1 ATGTAAGACCATGTCTGGGACAGTGGCATCGATAT-T--CGATCT
*
76543751 ATGTAAGACCATATCTGGGA
1 ATGTAAGACCATGTCTGGGA
76543771 TATGACTTTG
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
43 84 0.93
44 2 0.02
45 1 0.01
46 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
ATGTAAGACCATGTCTGGGACAGTGGCATCGATATTCGATCT
Found at i:76545260 original size:18 final size:19
Alignment explanation
Indices: 76545217--76545260 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
76545207 TTATATTAAT
* *
76545217 ATTTATGTGAAATTGAATC
1 ATTTATGAGAAATTGAATA
*
76545236 ATGTATGAGAAA-TGAATA
1 ATTTATGAGAAATTGAATA
76545254 ATTTATG
1 ATTTATG
76545261 TTGTGTTTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.39
Consensus pattern (19 bp):
ATTTATGAGAAATTGAATA
Found at i:76546800 original size:42 final size:42
Alignment explanation
Indices: 76546739--76546914 Score: 169
Period size: 42 Copynumber: 4.0 Consensus size: 42
76546729 CTTCGTTTTC
* ** * *
76546739 TCGATGCAATAGTTCAACTATAGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
*
76546782 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
*
76546823 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC---AT---AT-TCACATA
* *
76546872 TCGATGCCATAACCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATA
76546913 TC
1 TC
76546915 TCACTGATGC
Statistics
Matches: 115, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
41 11 0.10
42 61 0.53
43 2 0.02
45 2 0.02
47 1 0.01
48 2 0.02
49 36 0.31
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:76546882 original size:49 final size:48
Alignment explanation
Indices: 76546822--76546991 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 48
76546812 ATATTCATAT
* *
76546822 ATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACA
1 ATCGATGCCATATCCCAGATATGGTCTTACACGTAATCACATATCACA
* * *
76546870 TATCGATGCCATAACCCAGCTATGGTCTTACACG-AATCACATATCTCA
1 -ATCGATGCCATATCCCAGATATGGTCTTACACGTAATCACATATCACA
* * * *
76546918 CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-
1 ATCGATGCCATATCCCAGATATGGTCTTACAC-GTAATCACATATCACA
*
76546964 ACCGATGCCATATCCCAGATATGGTCTT
1 ATCGATGCCATATCCCAGATATGGTCTT
76546992 GTACGGAAAT
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
46 26 0.24
47 36 0.34
48 13 0.12
49 32 0.30
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (48 bp):
ATCGATGCCATATCCCAGATATGGTCTTACACGTAATCACATATCACA
Found at i:76547093 original size:31 final size:31
Alignment explanation
Indices: 76547014--76547100 Score: 122
Period size: 31 Copynumber: 2.8 Consensus size: 31
76547004 CTTGTCACTT
* *
76547014 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAC
* *
76547045 GTAGTCGATA-CTCCCACTTTTCACTGATCAC
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAC
76547076 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
76547101 TGTCATTTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.02
31 46 0.96
32 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAC
Found at i:76547186 original size:50 final size:50
Alignment explanation
Indices: 76547076--76547252 Score: 275
Period size: 50 Copynumber: 3.5 Consensus size: 50
76547066 CACTGATCAC
* *
76547076 GTAGCCGAAGCTACCACTTTTCACTTGTCA-TTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTACCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
*
76547127 GTAGTCGAAGCTACCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTACCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
* *
76547177 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGAAAAGT
1 GTAGCCGAAGCTACCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
*
76547227 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTACCACTTATCACTT
76547253 GTTGCCATGG
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
50 92 0.77
51 27 0.23
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTACCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
Found at i:76550821 original size:20 final size:20
Alignment explanation
Indices: 76550796--76550843 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
76550786 AATAGGGGTC
76550796 ACACACCCGTGTGGCTTGGG
1 ACACACCCGTGTGGCTTGGG
76550816 ACACACCCGTGTGGCTTGGG
1 ACACACCCGTGTGGCTTGGG
76550836 ACACACCC
1 ACACACCC
76550844 ATATGGGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.17
Consensus pattern (20 bp):
ACACACCCGTGTGGCTTGGG
Found at i:76553127 original size:64 final size:64
Alignment explanation
Indices: 76553053--76553193 Score: 196
Period size: 64 Copynumber: 2.2 Consensus size: 64
76553043 CATTAATTAT
* * * *
76553053 ATATGTACTTACCATACATGCAATA-TTAAAGCATTTAAAGTATG-GTACATATTGCATAATTTG
1 ATATGAACTTACCATAAATGCAATATTTAAA-CATTTAAAATA-GAGTACATATTGCATAACTTG
76553116 C
64 C
* *
76553117 ATATGAACTTACCATAAATGCAATATTTAAACATTTAAAATAGATTACATATTGCATTACTTGC
1 ATATGAACTTACCATAAATGCAATATTTAAACATTTAAAATAGAGTACATATTGCATAACTTGC
76553181 ATATGAACTTACC
1 ATATGAACTTACC
76553194 CCGATACTAA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
63 1 0.01
64 63 0.91
65 5 0.07
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (64 bp):
ATATGAACTTACCATAAATGCAATATTTAAACATTTAAAATAGAGTACATATTGCATAACTTGC
Found at i:76555926 original size:33 final size:34
Alignment explanation
Indices: 76555857--76555927 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
76555847 AACAGTGCTT
* * *
76555857 ACAGTAACGGTCTGGGCCTAAGCCCTATTCATTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
* *
76555891 ACAGT-ACAGTCTTGGCCTAAGCCCTCTGCAGTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
76555924 ACAG
1 ACAG
76555928 AGTTGGCCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
Found at i:76557719 original size:28 final size:28
Alignment explanation
Indices: 76557672--76557736 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
76557662 AAATTAACCC
*
76557672 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
76557700 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
76557728 TAGGGGTAT
1 TAGGGGTAT
76557737 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:76565057 original size:28 final size:27
Alignment explanation
Indices: 76565015--76565104 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
76565005 TGGATAGAGT
76565015 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
** *
76565044 CACCAGAACAGATATACGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
76565071 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
76565099 CACCAG
1 CACCAG
76565105 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:76565255 original size:27 final size:28
Alignment explanation
Indices: 76565212--76565272 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
76565202 ATTAACTCTA
*
76565212 GGGTATAGAGGTCA-TTTGCATACATAG
1 GGGTATAGAGGTAATTTTGCATACATAG
76565239 GGGTATA-ATGGTAATTTTGCATACATAG
1 GGGTATAGA-GGTAATTTTGCATACATAG
76565267 GGGTAT
1 GGGTAT
76565273 TCTAGTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 1 0.03
27 11 0.35
28 19 0.61
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (28 bp):
GGGTATAGAGGTAATTTTGCATACATAG
Found at i:76566359 original size:12 final size:13
Alignment explanation
Indices: 76566340--76566372 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
76566330 GGGTTCGGCT
76566340 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
76566353 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
76566365 ATGGAGAA
1 ATGGAGAA
76566373 AAGAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:76587278 original size:26 final size:27
Alignment explanation
Indices: 76587238--76587295 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
76587228 TTAGCTCTTA
76587238 TGAGCTTCCCGATTATATGACTCTTCG
1 TGAGCTTCCCGATTATATGACTCTTCG
* * * *
76587265 TGAGTTTCCC-ATTATTTGGCTCTTTG
1 TGAGCTTCCCGATTATATGACTCTTCG
76587291 TGAGC
1 TGAGC
76587296 ATCTAATATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.41
Consensus pattern (27 bp):
TGAGCTTCCCGATTATATGACTCTTCG
Found at i:76590055 original size:30 final size:30
Alignment explanation
Indices: 76590021--76590081 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76590011 TCCTTAACTC
76590021 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76590051 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76590081 A
1 A
76590082 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76595809 original size:48 final size:48
Alignment explanation
Indices: 76595707--76595944 Score: 368
Period size: 48 Copynumber: 4.9 Consensus size: 48
76595697 AGATAAATAT
* * * ***
76595707 ATATATATGTGTGGTAAAGCCGAATGGTGTGAATAAAAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGG-CT-AATGTGAAATATGTATGAG
76595757 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
76595805 ATATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
76595853 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
76595901 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
76595945 GAAGATGTGT
Statistics
Matches: 177, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
48 151 0.85
49 1 0.01
50 25 0.14
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:76596175 original size:37 final size:37
Alignment explanation
Indices: 76596074--76596176 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
76596064 GGAAATATAT
*
76596074 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
76596111 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
76596148 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
76596177 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:76602536 original size:47 final size:47
Alignment explanation
Indices: 76602482--76602821 Score: 437
Period size: 47 Copynumber: 7.1 Consensus size: 47
76602472 TTAGGATTTT
** * *
76602482 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
76602529 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATA--TGTGATAAGGCCGAATGGCCA
** * * *
76602580 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
76602627 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATA--TGTGATAAGGCCGAATGGCCA
** *
76602678 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
** *
76602725 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
76602772 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
76602819 ATG
1 ATG
76602822 AGAAATGTGT
Statistics
Matches: 260, Mismatches: 25, Indels: 16
0.86 0.08 0.05
Matches are distributed among these distances:
47 169 0.65
49 15 0.06
51 76 0.29
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:76602586 original size:98 final size:98
Alignment explanation
Indices: 76602482--76602821 Score: 508
Period size: 98 Copynumber: 3.5 Consensus size: 98
76602472 TTAGGATTTT
** * *
76602482 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
76602547 TGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
* * *
76602580 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
76602645 TGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
* * *
76602678 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
***
76602742 ---ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
* * *
76602772 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAAATG
76602822 AGAAATGTGT
Statistics
Matches: 225, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
94 72 0.32
97 1 0.00
98 152 0.68
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (98 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
TGTATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:76602631 original size:145 final size:141
Alignment explanation
Indices: 76602482--76602821 Score: 500
Period size: 145 Copynumber: 2.4 Consensus size: 141
76602472 TTAGGATTTT
*
76602482 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAA-C
*
76602547 TGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
65 ---ATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
*
76602612 AAGGCTGAATGGCAA
127 AAGGCCGAATGGCAA
* *
76602627 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--TGTGTATATA--TGTGATAAGGCCGAATGGCAAATGTGATGAATGTG
* *
76602692 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
62 AACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
*
76602757 AAGGCCGAATGGCCA
127 AAGGCCGAATGGCAA
** * *
76602772 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCAAATG
76602822 AGAAATGTGT
Statistics
Matches: 178, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
141 22 0.12
143 7 0.04
145 104 0.58
147 9 0.05
148 1 0.01
149 35 0.20
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (141 bp):
ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
TACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGG
CCGAATGGCAA
Found at i:76602931 original size:46 final size:46
Alignment explanation
Indices: 76602795--76602931 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
76602785 GAACATGTAT
* *
76602795 ATATGTGGTAAGGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* *
76602841 ATATGAGGTAAAGCCGAATGGCTAAT-ACGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGA-GAAATGTGTATGAGATGG
* * * *
76602887 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATG
76602932 TGTATATATA
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
45 1 0.01
46 78 0.99
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
Found at i:76606206 original size:37 final size:37
Alignment explanation
Indices: 76606146--76606221 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
76606136 TATTACGAAA
* * *
76606146 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
76606183 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
76606220 TC
1 TC
76606222 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:76606420 original size:47 final size:47
Alignment explanation
Indices: 76606342--76606747 Score: 623
Period size: 47 Copynumber: 8.6 Consensus size: 47
76606332 CCCTTCGGGA
* * * * *
76606342 CTTATCACATTTATGCACTTTCACATCCATCACATCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76606389 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76606436 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76606483 CTTATCACATATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76606532 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76606579 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76606626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76606673 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76606720 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
76606748 ATGGGTTTAA
Statistics
Matches: 329, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 271 0.82
49 58 0.18
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76614573 original size:25 final size:25
Alignment explanation
Indices: 76614537--76614588 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
76614527 CGAGTAAGTT
76614537 AACATAGCTTAGTAAGTTTAAAACA
1 AACATAGCTTAGTAAGTTTAAAACA
*
76614562 AACATAGTTTAGTAAGTTTAAAACA
1 AACATAGCTTAGTAAGTTTAAAACA
76614587 AA
1 AA
76614589 TAGACAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (25 bp):
AACATAGCTTAGTAAGTTTAAAACA
Found at i:76615441 original size:24 final size:24
Alignment explanation
Indices: 76615414--76615530 Score: 144
Period size: 24 Copynumber: 4.6 Consensus size: 24
76615404 AACCAAAATG
76615414 AGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGTAACAGAATC
76615438 AGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATC------AGTAACAGAATC
* *
76615468 AGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCA-GTAACAGAATC
*
76615493 AGAATCAGAATCTGTAACAGAATC
1 AGAATCAGAATCAGTAACAGAATC
76615517 AGAATCAGAATCAG
1 AGAATCAGAATCAG
76615531 AATTAGGTGA
Statistics
Matches: 80, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
24 36 0.45
25 21 0.26
30 23 0.29
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAGTAACAGAATC
Found at i:76615499 original size:49 final size:51
Alignment explanation
Indices: 76615437--76615560 Score: 164
Period size: 55 Copynumber: 2.4 Consensus size: 51
76615427 GTAACAGAAT
76615437 CAGAATCAGAATCAATAT-T-AGTAA-CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAATATGTAAG-AATCAGAATCAGAATCAGAATTAGGTGA
*
76615486 CAGAATCAGAATCAGAATCTGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATC--AATATGT-A-AGAATCAGAATCAGAATCAGAATTAGGTGA
*
76615541 CAGAATCAGAATCAAAATGT
1 CAGAATCAGAATCAATATGT
76615561 GAATGCAATC
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
49 13 0.20
51 4 0.06
52 1 0.02
53 5 0.08
54 2 0.03
55 40 0.62
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.21
Consensus pattern (51 bp):
CAGAATCAGAATCAATATGTAAGAATCAGAATCAGAATCAGAATTAGGTGA
Found at i:76615553 original size:6 final size:6
Alignment explanation
Indices: 76615414--76615533 Score: 115
Period size: 6 Copynumber: 19.8 Consensus size: 6
76615404 AACCAAAATG
*
76615414 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* * *
76615462 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC TGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
76615511 AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT
76615534 TAGGTGACAG
Statistics
Matches: 95, Mismatches: 8, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
5 8 0.08
6 78 0.82
7 7 0.07
8 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:76616139 original size:27 final size:26
Alignment explanation
Indices: 76616060--76616141 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 26
76616050 TCGATCGGTC
* * *
76616060 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
76616086 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
76616113 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
76616140 AA
1 AA
76616142 TGCTTCTTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:76616371 original size:27 final size:27
Alignment explanation
Indices: 76616341--76616484 Score: 180
Period size: 27 Copynumber: 5.3 Consensus size: 27
76616331 GAGGCAAAAT
* * *
76616341 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76616368 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76616395 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76616422 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76616449 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76616476 AGTAATTCT
1 GGTAATTCT
76616485 TGTAACACCC
Statistics
Matches: 99, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:76618080 original size:29 final size:29
Alignment explanation
Indices: 76618017--76618084 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
76618007 AAATCAACCG
76618017 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
76618046 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
76618075 CGCACACTTA
1 CGCACACTTA
76618085 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:76618254 original size:29 final size:29
Alignment explanation
Indices: 76618191--76618258 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
76618181 TAATCAACCG
76618191 CGCACACTTAGTGGCATGCACTTTAAACT
1 CGCACACTTAGTGGCATGCACTTTAAACT
* **
76618220 CACACACTTAGT-GCTATGCA-TTTCAAGTT
1 CGCACACTTAGTGGC-ATGCACTTT-AAACT
76618249 CGCACACTTA
1 CGCACACTTA
76618259 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 5 0.15
29 28 0.85
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGGCATGCACTTTAAACT
Found at i:76618418 original size:29 final size:29
Alignment explanation
Indices: 76618367--76618438 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
76618357 ATCAACCGCG
* * *
76618367 CACACTTAGTGCCATGCACTTTAAACTCA
1 CACACTTAGTGCCATACAATTTAAACCCA
** *
76618396 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATACAATTTAAACCCA
*
76618425 CACACTAAGTGCCA
1 CACACTTAGTGCCA
76618439 ATCTCATGAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.32, C:0.31, G:0.12, T:0.25
Consensus pattern (29 bp):
CACACTTAGTGCCATACAATTTAAACCCA
Found at i:76618430 original size:174 final size:174
Alignment explanation
Indices: 76617906--76618408 Score: 954
Period size: 174 Copynumber: 2.9 Consensus size: 174
76617896 AACTCAAGGT
76617906 ACTTACCTTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTAT
1 ACTTACC-TTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTAT
76617971 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAA-AATCAACCGCGCACACTTAGTGCCATG
65 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG
*
76618035 CACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
130 CACTTTAAACTCACACACTTAGTGCTATGCATTTCAAGTTCGCAC
76618080 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
*
76618145 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGGCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
76618210 ACTTTAAACTCACACACTTAGTGCTATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCTATGCATTTCAAGTTCGCAC
* *
76618254 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
76618319 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
76618384 ACTTTAAACTCACACACTTAGTGCT
131 ACTTTAAACTCACACACTTAGTGCT
76618409 GTACAATTTA
Statistics
Matches: 323, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
173 94 0.29
174 229 0.71
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCTATGCATTTCAAGTTCGCAC
Found at i:76625782 original size:27 final size:27
Alignment explanation
Indices: 76625725--76625776 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
76625715 GGGCTGTTAC
*
76625725 AATTCTACCCTATAGGGGTATTTCAAA
1 AATTCTACCCTACAGGGGTATTTCAAA
76625752 AATTCTACCCTACAGGGGTATTTCA
1 AATTCTACCCTACAGGGGTATTTCA
76625777 GTAATTTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCAAA
Found at i:76625824 original size:27 final size:27
Alignment explanation
Indices: 76625794--76626201 Score: 493
Period size: 27 Copynumber: 15.1 Consensus size: 27
76625784 CACAATCAAA
*
76625794 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
76625821 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
76625848 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
76625875 GGTAAAATAGTAATTCTGTAAATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * *
76625902 GGCAAAACAGTAATTCTGTAAATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
76625929 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
76625956 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * **
76625983 GGTAAAATGGTAATTTTAAAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
76626010 GGTAAAACGATAATTCTGTAAA-CTGGG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
76626037 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * * *
76626064 GGTAAAACAATAATTCTATACATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
76626091 GGTAAAACAGTAATTCTGTAAA-CTGAC
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
76626118 GGTAAAACAGTAATT-TGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
76626144 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
76626171 GGTAAAACGGTAATTCTGTAAATCGAT
1 GGTAAAACGGTAATTCTGTAAATCGAG
76626198 GGTA
1 GGTA
76626202 CTTTGGTAAT
Statistics
Matches: 332, Mismatches: 40, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
26 24 0.07
27 305 0.92
28 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:76627962 original size:6 final size:6
Alignment explanation
Indices: 76627936--76628061 Score: 118
Period size: 6 Copynumber: 20.8 Consensus size: 6
76627926 AACCAAAATG
* *
76627936 AGAATC AAAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
*
76627984 AGAATC AGAATC AGAATC AGTAA-C AGAACC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
76628032 AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAAT--C AGAATC AGAATC AGAAT
76628062 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
5 8 0.08
6 83 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:76627970 original size:30 final size:30
Alignment explanation
Indices: 76627936--76628061 Score: 157
Period size: 30 Copynumber: 4.2 Consensus size: 30
76627926 AACCAAAATG
76627936 AGAATCAAAATCAGTAACAGAATCAGAATC
1 AGAATCAAAATCAGTAACAGAATCAGAATC
* *
76627966 AGAATCAATATTAGTAACAGAATCAGAATC
1 AGAATCAAAATCAGTAACAGAATCAGAATC
*
76627996 AGAATCAGTAA-CAG-AACCAGAATCAGAATC
1 AGAATCA-AAATCAGTAA-CAGAATCAGAATC
* * *
76628026 AGAATCAGAATTAGGTGACAGAATCAGAATC
1 AGAATCAAAATCA-GTAACAGAATCAGAATC
76628057 AGAAT
1 AGAAT
76628062 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
29 4 0.05
30 58 0.70
31 20 0.24
32 1 0.01
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (30 bp):
AGAATCAAAATCAGTAACAGAATCAGAATC
Found at i:76628216 original size:27 final size:26
Alignment explanation
Indices: 76628179--76628237 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
76628169 AGCATGGCTG
*
76628179 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
76628205 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
76628232 CCAGAA
1 CCAGAA
76628238 TCAGGTAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:76628249 original size:27 final size:27
Alignment explanation
Indices: 76628179--76628261 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
76628169 AGCATGGCTG
* *
76628179 CCAGA-ACAGAT-ATCGTGACAGAGTCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
76628205 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATAATGTGGCAGAGCCA
* * *
76628232 CCAGA-ATCAGGTAATGTGGCAAACCCA
1 CCAGATA-CAGATAATGTGGCAGAGCCA
76628259 CCA
1 CCA
76628262 ACAGAATACG
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.13
27 40 0.85
28 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:76628601 original size:27 final size:26
Alignment explanation
Indices: 76628562--76628645 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 26
76628552 TCGATCTGTC
*
76628562 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGACAGAGCCACCAA
* *
76628588 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAA
* * *
76628615 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGACAGAGCCACCAA
76628642 AACA
1 AACA
76628646 CTTCTTCCGT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAA
Found at i:76629038 original size:27 final size:27
Alignment explanation
Indices: 76628843--76629038 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
76628833 GGGGCAAAAT
* * *
76628843 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
76628870 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76628897 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76628924 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76628951 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
76628978 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76629005 GGAAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76629032 AGTAATT
1 GGTAATT
76629039 TCACAATCAA
Statistics
Matches: 135, Mismatches: 34, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 135 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Done.