Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 233 of 356
Found at i:76629038 original size:54 final size:54
Alignment explanation
Indices: 76628842--76629031 Score: 283
Period size: 54 Copynumber: 3.5 Consensus size: 54
76628832 AGGGGCAAAA
* * *
76628842 TGGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTT
* *
76628896 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTT
* * *
76628950 TGGTAATTCTATCCTATAAGGGTATTTC-AGTAATTCTACCTTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTACCCTATAGGGGTATTT
*
76629004 TGGAAATTCTACCCTACAAGGGTATTTC
1 TGGTAATTCTACCCTACAAGGGTATTTC
76629032 AGTAATTTCA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
53 1 0.01
54 121 0.99
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTT
Found at i:76629079 original size:27 final size:27
Alignment explanation
Indices: 76629043--76629457 Score: 439
Period size: 27 Copynumber: 15.4 Consensus size: 27
76629033 GTAATTTCAC
* *
76629043 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
76629070 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76629097 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76629124 AATCGAGGGTAAATA--GTAATTCGGTA
1 AATCGAGGGTAAA-ACGGTAATTCTGTA
* ***
76629150 AA-CTGAGCGTAAAATAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
76629177 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76629204 AA-CTAAGGATAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
76629231 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
76629258 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
76629285 AA-CTGAGGGTAAAACATTGATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
76629312 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** * *
76629339 AATCGAGGGTAAAATAGTATTTGTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
76629366 AA-CTGAGGGTAAAATAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
76629393 AATCGAGGGTAAAACGGTAATTCCGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76629420 AA-CTAAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
76629447 AATCGAGGGTA
1 AATCGAGGGTA
76629458 CTTTGGTAAT
Statistics
Matches: 326, Mismatches: 49, Indels: 26
0.81 0.12 0.06
Matches are distributed among these distances:
25 2 0.01
26 23 0.07
27 295 0.90
28 6 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:76632481 original size:25 final size:26
Alignment explanation
Indices: 76632444--76632501 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
76632434 ACACACAGCC
* *
76632444 ATGTGTACAGGCATATGGTTTGG-CG
1 ATGTATACAGGCATATAGTTTGGCCG
* *
76632469 ATGTATACGGGCATGTAGTTTGGCCG
1 ATGTATACAGGCATATAGTTTGGCCG
76632495 AGTGTAT
1 A-TGTAT
76632502 GAGTGTGCGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 19 0.70
26 3 0.11
27 5 0.19
ACGTcount: A:0.21, C:0.12, G:0.34, T:0.33
Consensus pattern (26 bp):
ATGTATACAGGCATATAGTTTGGCCG
Found at i:76634829 original size:14 final size:15
Alignment explanation
Indices: 76634810--76634839 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76634800 GTTTATTATA
76634810 TGTGAA-GTATCATG
1 TGTGAATGTATCATG
76634824 TGTGAATGTATCATG
1 TGTGAATGTATCATG
76634839 T
1 T
76634840 CTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
TGTGAATGTATCATG
Found at i:76636760 original size:43 final size:43
Alignment explanation
Indices: 76636712--76636844 Score: 112
Period size: 42 Copynumber: 3.1 Consensus size: 43
76636702 GGCTTTGAGC
*
76636712 CTAGCAGGCATAATGCCGGTGAAATGATATTGGACTTAAAGGT
1 CTAGCAAGCATAATGCCGGTGAAATGATATTGGACTTAAAGGT
* * * *** *
76636755 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATTGGGCTCCGA-GC
1 CTAGCAAGC-ATAATGCCGGTGAAATGA-TATTGGACTTAAAGGT
* * **
76636796 CTAGCAAGCATAATGTCTGTGAAATGATATCAGACTTAAAGGT
1 CTAGCAAGCATAATGCCGGTGAAATGATATTGGACTTAAAGGT
76636839 CTAGCA
1 CTAGCA
76636845 GGTTTATTGC
Statistics
Matches: 65, Mismatches: 19, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
40 3 0.05
41 15 0.23
42 22 0.34
43 22 0.34
44 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.27
Consensus pattern (43 bp):
CTAGCAAGCATAATGCCGGTGAAATGATATTGGACTTAAAGGT
Found at i:76639255 original size:224 final size:224
Alignment explanation
Indices: 76638865--76639281 Score: 744
Period size: 224 Copynumber: 1.9 Consensus size: 224
76638855 ATTGAACTGA
*
76638865 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATGAAAAGAAGTTTATAAAATGTGTGCA
1 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATAAAATGTGTGCA
76638930 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGGTGGAA
66 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGGTGGAA
*
76638995 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACAGAAAAGAGCATGGTTGGACCATGGTC
131 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACAGAAAAGACCATGGTTGGACCATGGTC
76639060 TTTTCCGTCAATTCATTAGTATAAAGTAT
196 TTTTCCGTCAATTCATTAGTATAAAGTAT
** * *
76639089 TTGTAATATATTTGTGATATGACGGAATTGGAAAGGTATAAAAAGAAGTTTATGATATGTGTGCA
1 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATAAAATGTGTGCA
*
76639154 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAGATCAAATTGGGTGGAA
66 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGGTGGAA
* * *
76639219 CGCATGGAATGAGTACGATCGTTCACTAATGAATTGATAGAAAAGACCATGGTTGGACCATGG
131 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACAGAAAAGACCATGGTTGGACCATGG
76639282 CAATACATGA
Statistics
Matches: 183, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
224 183 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (224 bp):
TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATAAAATGTGTGCA
TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGGTGGAA
CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACAGAAAAGACCATGGTTGGACCATGGTC
TTTTCCGTCAATTCATTAGTATAAAGTAT
Found at i:76646464 original size:16 final size:17
Alignment explanation
Indices: 76646441--76646478 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
76646431 AATAAACAAT
76646441 TAAA-TAAATT-GGAAA
1 TAAATTAAATTGGGAAA
76646456 TAAATTAAATTGGGAAA
1 TAAATTAAATTGGGAAA
76646473 TAAATT
1 TAAATT
76646479 CGGAATTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.19
16 6 0.29
17 11 0.52
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (17 bp):
TAAATTAAATTGGGAAA
Found at i:76660941 original size:94 final size:90
Alignment explanation
Indices: 76660819--76661036 Score: 251
Period size: 94 Copynumber: 2.4 Consensus size: 90
76660809 AGACATTTGC
*
76660819 GCTAGTGTTAGACATGTTTGGGACATGCATCGGCCAC-ATAATAAGAGCCAGTGTGAGACCATGT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACGA-AATAAGAGCCAGTGTGAGA-CATGT
* *
76660883 TTGGGACATGGCATCGGC-ATTGAGATGAGT
64 CTGGGACAT-GCATCGGCTA-CGAGAT--GT
* * * *** * *
76660913 GCTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGATGTTAGCTAGTGTTAGACATGTCT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACGAAATAAGAGCCAGTGTGAGACATGTCT
*
76660978 GGGACATGCGTCGGCTACGAGATGT
66 GGGACATGCATCGGCTACGAGATGT
*
76661003 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGC
76661037 ACGGTTACGT
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
90 34 0.31
92 12 0.11
93 14 0.13
94 47 0.44
95 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (90 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACGAAATAAGAGCCAGTGTGAGACATGTCT
GGGACATGCATCGGCTACGAGATGT
Found at i:76660955 original size:46 final size:45
Alignment explanation
Indices: 76660819--76661036 Score: 217
Period size: 46 Copynumber: 4.8 Consensus size: 45
76660809 AGACATTTGC
* * * * *
76660819 GCTAGTGTTAGACATGTTTGGGACATGCATCGGCCAC-ATAATAAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GAT-GGT
* * * *
76660865 GCCAGTGTGAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAGT
1 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATG-GT
* *
76660913 GCTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGATGTT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGGT
* * *
76660958 AGCTAGTGTTAGACATGTCTGGGACATGCGTCGG-CTACGAGAT-GT
1 -GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGATGGT
*
76661003 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGC
76661037 ACGGTTACGT
Statistics
Matches: 144, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
44 31 0.22
45 4 0.03
46 60 0.42
47 27 0.19
48 21 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGGT
Found at i:76661056 original size:90 final size:91
Alignment explanation
Indices: 76660819--76661073 Score: 211
Period size: 90 Copynumber: 2.8 Consensus size: 91
76660809 AGACATTTGC
* * * * * * *
76660819 GCTAGTGTTAGACATGTTTGGGACATGCATCGGCCAC-ATA-ATAAGAGCCAGTGTGAGACCATG
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGACGT--TAG-CAGTGTAAGA-CATG
* *
76660882 TTTGGGACATGGCATCGGCATTGAGATGAGT
62 TCTGGGACATGGCATCGGCATCGAGAT-AGT
* * * *
76660913 GCTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGATGTTAGCTAGTGTTAGACATGTCT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGACGTTAGC-AGTGTAAGACATGTCT
*
76660978 GGGACAT-GCGTCGGC-TACGAGAT-GT
65 GGGACATGGCATCGGCAT-CGAGATAGT
* *
76661003 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CACG-GTTACGTGT-GTCAGTGTAAGACCTG
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAG--ACGT-TAG-CAGTGTAAGACATG
76661065 TCTGGGACA
62 TCTGGGACA
76661074 CGACATCGAC
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
88 1 0.01
89 3 0.02
90 57 0.42
91 3 0.02
92 12 0.09
93 14 0.10
94 44 0.32
95 2 0.01
96 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGACGTTAGCAGTGTAAGACATGTCTG
GGACATGGCATCGGCATCGAGATAGT
Found at i:76662901 original size:24 final size:21
Alignment explanation
Indices: 76662874--76662924 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 21
76662864 TTGATAAGTG
*
76662874 ATTAAAACATCATAAATAATATGA
1 ATTAAAA-AT-ATAAA-AAGATGA
76662898 ATTAAAAATATAAAAAGATGA
1 ATTAAAAATATAAAAAGATGA
76662919 A-TAAAA
1 ATTAAAA
76662925 GAAGAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 5 0.19
21 7 0.27
22 5 0.19
23 2 0.08
24 7 0.27
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (21 bp):
ATTAAAAATATAAAAAGATGA
Found at i:76662920 original size:21 final size:24
Alignment explanation
Indices: 76662867--76662924 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 24
76662857 TATTATATTG
76662867 ATAAG-TG-ATTAAAACATCATAA
1 ATAAGATGAATTAAAACATCATAA
*
76662889 ATAATATGAATTAAAA-AT-ATAA
1 ATAAGATGAATTAAAACATCATAA
76662911 A-AAGATGAA-TAAAA
1 ATAAGATGAATTAAAA
76662925 GAAGAAATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 5 0.16
21 7 0.22
22 9 0.28
23 4 0.12
24 7 0.22
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (24 bp):
ATAAGATGAATTAAAACATCATAA
Found at i:76669020 original size:30 final size:29
Alignment explanation
Indices: 76668984--76669047 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
76668974 ATGAATCAAA
76668984 AGCTTTGGCACCAAGTGTGCGATTTAAACT
1 AGCTTTGGCACCAAGTGTGCGATTT-AACT
*
76669014 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACCAAGTGTGCGATTTAACT
76669043 AGCTT
1 AGCTT
76669048 CAGCTACTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACCAAGTGTGCGATTTAACT
Found at i:76673390 original size:12 final size:12
Alignment explanation
Indices: 76673373--76673403 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
76673363 ATGGAATATT
76673373 TCAAAATCACCA
1 TCAAAATCACCA
76673385 TCAAAATCACCA
1 TCAAAATCACCA
76673397 TCAAAAT
1 TCAAAAT
76673404 AAAAAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (12 bp):
TCAAAATCACCA
Found at i:76673614 original size:11 final size:11
Alignment explanation
Indices: 76673600--76673624 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76673590 TTTAATTTAA
76673600 TTATAATTAGT
1 TTATAATTAGT
76673611 TTATAATTAGT
1 TTATAATTAGT
76673622 TTA
1 TTA
76673625 CCATTTTGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (11 bp):
TTATAATTAGT
Found at i:76677221 original size:27 final size:27
Alignment explanation
Indices: 76677191--76677461 Score: 318
Period size: 27 Copynumber: 10.2 Consensus size: 27
76677181 ATTACGAAAG
*
76677191 TACCATCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76677218 TACCCTCGATTTATAGAATTACTC-TTT
1 TACCCTCGATTTACAGAATTAC-CGTTT
*
76677245 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76677272 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76677299 TACCCTCGATTTAAAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76677326 TACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76677353 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
76677380 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76677407 TACCCTCGATTTATAGAATTACC----
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76677430 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
76677457 TACCC
1 TACCC
76677462 CTAGGGTGTT
Statistics
Matches: 212, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
23 22 0.10
27 189 0.89
28 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:76677741 original size:27 final size:26
Alignment explanation
Indices: 76677697--76677748 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76677687 CTCGCTGCAA
*
76677697 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
76677724 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
76677749 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:76678002 original size:6 final size:6
Alignment explanation
Indices: 76677965--76678095 Score: 72
Period size: 6 Copynumber: 21.3 Consensus size: 6
76677955 TTGCATTCAC
* * * *
76677965 ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
76678014 -TCACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TCACCTG ATTCTA
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
76678064 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
76678096 AATGTTTCAT
Statistics
Matches: 93, Mismatches: 21, Indels: 22
0.68 0.15 0.16
Matches are distributed among these distances:
5 5 0.05
6 76 0.82
7 9 0.10
8 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:76678028 original size:37 final size:37
Alignment explanation
Indices: 76677987--76678074 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
76677977 ATTCTGTTAC
*
76677987 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
* * *
76678024 CTGATTCTGGTTCTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
*
76678061 CTAATTCTGATTCT
1 CTGATTCTGATTCT
76678075 CATTTTGATT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
Found at i:76678030 original size:19 final size:19
Alignment explanation
Indices: 76677999--76678069 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
76677989 GATACTGATT
76677999 CTGATTCTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
* * *
76678018 CTAATTCTGATTCTGGT--T
1 CTGATTCTAATTCT-GTCAC
*
76678036 CTGATTCTGATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
76678055 CTGATTCTAATTCTG
1 CTGATTCTAATTCTG
76678070 ATTCTCATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.05
18 13 0.30
19 26 0.60
20 2 0.05
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (19 bp):
CTGATTCTAATTCTGTCAC
Found at i:76678059 original size:31 final size:31
Alignment explanation
Indices: 76677965--76678074 Score: 103
Period size: 31 Copynumber: 3.4 Consensus size: 31
76677955 TTGCATTCAC
* * * *
76677965 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
*
76677996 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCA-C-----CTGATTCTG
* *
76678033 GTTCTGATTCTGATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
76678064 ATTCTGATTCT
1 ATTCTGATTCT
76678075 CATTTTGATT
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
31 35 0.55
32 1 0.02
36 1 0.02
37 27 0.42
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:76678084 original size:37 final size:36
Alignment explanation
Indices: 76677965--76678086 Score: 128
Period size: 37 Copynumber: 3.4 Consensus size: 36
76677955 TTGCATTCAC
* *
76677965 ATTCTAATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCT-ATTTTGATTCTGTCACCTGATTCTGATTCTG
*
76678002 ATTCTA-----ATTCTGTCACCTAATTCTGATTCTG
1 ATTCTATTTTGATTCTGTCACCTGATTCTGATTCTG
* * *
76678033 GTTCTGATTCTGATTCTGTCACCTGATTCTAATTCTG
1 ATTCT-ATTTTGATTCTGTCACCTGATTCTGATTCTG
76678070 ATTCTCATTTTGATTCT
1 ATTCT-ATTTTGATTCT
76678087 AGTTCTGATA
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
31 26 0.37
32 1 0.01
36 1 0.01
37 42 0.60
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (36 bp):
ATTCTATTTTGATTCTGTCACCTGATTCTGATTCTG
Found at i:76679116 original size:30 final size:30
Alignment explanation
Indices: 76679080--76679141 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
76679070 AAGTTCTAGT
* *
76679080 TGAAGTGTGATAGTGATAGTAGGATGAGAG
1 TGAAGTGTGATAGTGATAGTACGATCAGAG
76679110 TGAAGTGTGATAGTGATAGTACGATCAGAG
1 TGAAGTGTGATAGTGATAGTACGATCAGAG
76679140 TG
1 TG
76679142 CGCAGCGGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.32, C:0.03, G:0.37, T:0.27
Consensus pattern (30 bp):
TGAAGTGTGATAGTGATAGTACGATCAGAG
Found at i:76680324 original size:27 final size:27
Alignment explanation
Indices: 76680294--76680620 Score: 338
Period size: 27 Copynumber: 12.2 Consensus size: 27
76680284 ATTACCAAAG
* * *
76680294 TACCCTCAATTTACAGAAGTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76680321 TACCCTTGATTTTACAGAATTACTGTTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
**
76680349 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
***
76680376 T-CCCTC-ATTTTACAGAATTATTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
76680402 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76680429 TACCTTCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76680456 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
76680483 TACCCTCGATTTGCAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
76680510 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
76680537 TACCCTCAATTTATAGAAATACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
76680564 TACCCTCGAGTTACA-AA-TACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
76680589 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
76680616 TACCC
1 TACCC
76680621 CGAGGGTGTT
Statistics
Matches: 257, Mismatches: 37, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
25 20 0.08
26 27 0.11
27 186 0.72
28 24 0.09
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:76680969 original size:27 final size:26
Alignment explanation
Indices: 76680931--76680990 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
76680921 ACACACATAT
* *
76680931 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
76680957 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
76680984 ATATCTG
1 ATATCTG
76680991 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:76681151 original size:6 final size:6
Alignment explanation
Indices: 76681109--76681205 Score: 81
Period size: 6 Copynumber: 15.8 Consensus size: 6
76681099 TTGCATTCAC
* * *
76681109 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
76681158 ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG GTTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
76681206 AGTTTTGATA
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
5 3 0.04
6 60 0.85
7 6 0.08
8 2 0.03
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:76681170 original size:43 final size:43
Alignment explanation
Indices: 76681103--76681205 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
76681093 TTGGGATTGC
* * *
76681103 ATTCACATTCTGATTTTGATTCTGTTACCTGATACTAATTCTG
1 ATTCTCATTCTGATTCTGATTCTGTCACCTGATACTAATTCTG
* * *
76681146 ATTCTGATTCTGATTCTGATTCTGTCACCTGATTCTGATTCTG
1 ATTCTCATTCTGATTCTGATTCTGTCACCTGATACTAATTCTG
* *
76681189 GTTCTCATTTTGATTCT
1 ATTCTCATTCTGATTCT
76681206 AGTTTTGATA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (43 bp):
ATTCTCATTCTGATTCTGATTCTGTCACCTGATACTAATTCTG
Found at i:76684909 original size:19 final size:19
Alignment explanation
Indices: 76684885--76684923 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
76684875 TGAGTATGTA
76684885 TGTGCCATAACATGTTTGC
1 TGTGCCATAACATGTTTGC
76684904 TGTGCCATAACATGTTTGC
1 TGTGCCATAACATGTTTGC
76684923 T
1 T
76684924 TATTAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (19 bp):
TGTGCCATAACATGTTTGC
Found at i:76702369 original size:13 final size:13
Alignment explanation
Indices: 76702351--76702380 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
76702341 TATGACACGT
76702351 AATATGCGTACAA
1 AATATGCGTACAA
76702364 AATATGCGTACAA
1 AATATGCGTACAA
76702377 AATA
1 AATA
76702381 ATCGGTCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.23
Consensus pattern (13 bp):
AATATGCGTACAA
Found at i:76706531 original size:40 final size:39
Alignment explanation
Indices: 76706441--76706625 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
76706431 TCGAACGATG
* * * * *
76706441 TCCGAGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
76706481 TCTGGACTAAGATTCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76706521 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
76706560 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
*
76706601 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
76706626 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 36 0.30
40 72 0.60
41 12 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76706647 original size:79 final size:79
Alignment explanation
Indices: 76706496--76706648 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 79
76706486 ACTAAGATTC
* **
76706496 GAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
76706561 CCGGGTTAAGTCCT
66 CCGGGTTAAGTCCT
* *
76706575 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
*
76706638 TATCC-GGTTAA
63 AATCCGGGTTAA
76706649 ATTCCGAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAGTCCT
Found at i:76713244 original size:357 final size:353
Alignment explanation
Indices: 76712566--76713208 Score: 916
Period size: 357 Copynumber: 1.8 Consensus size: 353
76712556 TGGGGGAGAG
* *
76712566 TTGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAA
1 TTGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTCTCGGAACCGCTAAACCGAGTCACCAA
* * * * *
76712631 ATTATTTGAATGTGATATTTATTGTCTAAAATATGTGATTATGAATGTGTGAAAGTTTTAGGCTT
66 ATTATTTGAATGTGATAATTATTGCCTAAAATATGTGAATATAAATGTGTGAAAGTTTTAAGCTT
* * * *
76712696 CAATTTAGTAAATTGCATGTGAATTTAGTCAAAAGGACTTAAGGGTGACATTTTTGAAATGTGAT
131 CAATTTAGTAAATTGCATGTGAATTTAGTCAAAAGGACTTAAGGGAGAAAATTTAGAAATGTGAT
* *
76712761 AGTCTAATGTACAAGGACCTAATAGTGCATGTAATCAAAAGGGGGACTTGCATGTCAATTTTCCC
196 AGGCAAATG-ACAAGGACCTAATAGTGCATGTAATCAAAAGGGGGACTTGCATGTCAATTTTCCC
* * * * *
76712826 CCCTAATATGTAGTGGCCGGCCATGAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCAT
260 CCCTAATATCTAGTGGCCGGCCATGAGCAGGGGTGGAAAACATGTCATGG---AAAACATGTCAT
76712891 AAACATGTTGGGGTAATGCATTATGTAAGGAT
322 AAACATGTTGGGGTAATGCATTATGTAAGGAT
*
76712923 TTGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTCTCGGAACCGCTAGACCGAGTCACCAA
1 TTGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTCTCGGAACCGCTAAACCGAGTCACCAA
76712988 ATTATTTGAATGTGATAATTATTGCCTAAAATATGTGAATATAAATGTGTGAAAGTTTTAAGCTT
66 ATTATTTGAATGTGATAATTATTGCCTAAAATATGTGAATATAAATGTGTGAAAGTTTTAAGCTT
* * ** * * * *
76713053 CGATTTAGTTAATTGCATGTGAATTTAGTTGATAGGACTTATGTGAGAAAATTTAGAAATGTGCT
131 CAATTTAGTAAATTGCATGTGAATTTAGTCAAAAGGACTTAAGGGAGAAAATTTAGAAATGTGAT
*
76713118 AGGCAAATG-CAAGTGGCCTAATAGTGCATGTAATC-AAAGGGTGGACTTGCATGTCAA-TTTCC
196 AGGCAAATGACAAG-GACCTAATAGTGCATGTAATCAAAAGGG-GGACTTGCATGTCAATTTTCC
*
76713180 CCCATTTAAGTA-CTAGTGGCCGGCCATGA
259 CCC--CTAA-TATCTAGTGGCCGGCCATGA
76713209 CAAGGGATGA
Statistics
Matches: 256, Mismatches: 25, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
355 18 0.07
356 35 0.14
357 201 0.79
358 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.30
Consensus pattern (353 bp):
TTGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTCTCGGAACCGCTAAACCGAGTCACCAA
ATTATTTGAATGTGATAATTATTGCCTAAAATATGTGAATATAAATGTGTGAAAGTTTTAAGCTT
CAATTTAGTAAATTGCATGTGAATTTAGTCAAAAGGACTTAAGGGAGAAAATTTAGAAATGTGAT
AGGCAAATGACAAGGACCTAATAGTGCATGTAATCAAAAGGGGGACTTGCATGTCAATTTTCCCC
CCTAATATCTAGTGGCCGGCCATGAGCAGGGGTGGAAAACATGTCATGGAAAACATGTCATAAAC
ATGTTGGGGTAATGCATTATGTAAGGAT
Found at i:76713283 original size:56 final size:55
Alignment explanation
Indices: 76713218--76713332 Score: 212
Period size: 56 Copynumber: 2.1 Consensus size: 55
76713208 ACAAGGGATG
76713218 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAAT-AAATAAGAAGC
*
76713274 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAATAAGAAGC
76713329 ATGG
1 ATGG
76713333 CAATAAACTA
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
55 15 0.26
56 43 0.74
ACGTcount: A:0.44, C:0.09, G:0.23, T:0.23
Consensus pattern (55 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAATAAGAAGC
Found at i:76714677 original size:80 final size:79
Alignment explanation
Indices: 76714458--76714682 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 79
76714448 TCGAATGATG
* * * * *
76714458 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCATT
*
76714522 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
* * *
76714538 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTCCTA-AATCCGGGTTAAGTCCCAAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGT-CCGAAGGCAT
*
76714600 TTGTGCGAGTTACTAAA
63 TTGTGCGAGATACTAAA
* *
76714617 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCTGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCC-GAAGGCATTT
76714682 G
65 G
76714683 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
78 2 0.02
79 61 0.50
80 54 0.44
81 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:76714689 original size:40 final size:40
Alignment explanation
Indices: 76714458--76714682 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
76714448 TCGAATGATG
* * * *
76714458 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
76714498 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76714538 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTCCTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
* *
76714577 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76714617 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76714658 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76714683 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
38 3 0.02
39 30 0.19
40 114 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76720564 original size:56 final size:56
Alignment explanation
Indices: 76720478--76720597 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
76720468 ACAAGGGATG
76720478 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
76720534 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76720590 ATGGGCAA
1 ATGGGCAA
76720598 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:76721929 original size:80 final size:80
Alignment explanation
Indices: 76721729--76721949 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 80
76721719 ATGATGTCTT
* * * * *
76721729 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGT
*
76721792 GCGAGATACTAATTCCG
64 GCGAGATACTAAATCCG
*
76721809 GGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGT
* *
76721871 GCGAGTTACTAAATCTG
64 GCGAGATACTAAATCCG
* *
76721888 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
76721950 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 12, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
78 2 0.02
79 60 0.49
80 55 0.45
81 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGATACTAAATCCG
Found at i:76721956 original size:40 final size:40
Alignment explanation
Indices: 76721729--76721949 Score: 272
Period size: 40 Copynumber: 5.5 Consensus size: 40
76721719 ATGATGTCTT
* * * *
76721729 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * *
76721769 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
76721809 GGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAATCCG
* *
76721848 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
76721888 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
76721928 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
76721950 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 112 0.70
41 13 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:76721956 original size:80 final size:79
Alignment explanation
Indices: 76721732--76721982 Score: 262
Period size: 79 Copynumber: 3.2 Consensus size: 79
76721722 ATGTCTTGGC
* * * * *
76721732 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* * *
76721795 AGATACTAATTCCGGGC
64 AG-TACTAAATCTGGGT
*
76721812 TAAG-CCCGAAGGCA-TTGATGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCG
76721874 AGTTACTAAATCTGGGT
64 AG-TACTAAATCTGGGT
* **
76721891 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
76721956 TAGCTATATCT-GGT
66 TA-CTAAATCTGGGT
* *
76721970 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
76721983 TACGTGATTT
Statistics
Matches: 146, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
78 2 0.01
79 76 0.52
80 63 0.43
81 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TACTAAATCTGGGT
Found at i:76722641 original size:13 final size:13
Alignment explanation
Indices: 76722623--76722649 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76722613 TAAAAGGGCT
76722623 AGTTGAATCATGG
1 AGTTGAATCATGG
76722636 AGTTGAATCATGG
1 AGTTGAATCATGG
76722649 A
1 A
76722650 AACTATGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (13 bp):
AGTTGAATCATGG
Found at i:76724901 original size:40 final size:40
Alignment explanation
Indices: 76724706--76724887 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
76724696 AATGATGTCT
* * * **
76724706 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* *
76724746 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
*
76724786 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
* *
76724825 GGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
76724865 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
76724888 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:76724909 original size:79 final size:79
Alignment explanation
Indices: 76724750--76724920 Score: 208
Period size: 79 Copynumber: 2.2 Consensus size: 79
76724740 ATATTCGGAC
* **
76724750 TAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGT
1 TAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGT
76724815 TACTAAATCCGGGT
66 TACTAAATCCGGGT
* *
76724829 TAAG-TCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACG
1 TAAGATCC-GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACG
*
76724892 AG-TAGCTATATCC-GGT
63 AGTTA-CTAAATCCGGGT
76724908 TAA-ATTCCGAAGG
1 TAAGA-TCCGAAGG
76724921 TACGTGATTC
Statistics
Matches: 80, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
78 5 0.06
79 48 0.60
80 27 0.34
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGT
TACTAAATCCGGGT
Found at i:76738319 original size:20 final size:20
Alignment explanation
Indices: 76738280--76738366 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
76738270 GATATGATAT
*
76738280 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
* *
76738300 ACATAATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
*
76738320 ACATGATATGTATGAAATGA
1 ACATGATATGTATGAAATGC
76738340 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
76738360 ACATGAT
1 ACATGAT
76738367 GTATTCATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 57 0.97
21 2 0.03
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:76738521 original size:25 final size:26
Alignment explanation
Indices: 76738416--76738551 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
76738406 GAGGAAGTGT
*
76738416 AAAAGGGCTTATGCCCCAGTTCATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76738442 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76738468 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
76738494 AAAAGGGCTT-TGTCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76738519 AAAAGGGCTT-TTCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
76738542 AAAAGAGGCT
1 AAAAG-GGCT
76738552 AGGCCTCCAA
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 27 0.27
26 60 0.61
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76738748 original size:42 final size:42
Alignment explanation
Indices: 76738683--76738774 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
76738673 TAATCTCCCA
* ** *
76738683 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
* *
76738725 AAATGGGCTTGCATACGTCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
76738767 AAATGGGC
1 AAATGGGC
76738775 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:76738839 original size:31 final size:31
Alignment explanation
Indices: 76738798--76738907 Score: 166
Period size: 31 Copynumber: 3.5 Consensus size: 31
76738788 CGTTTACAGT
* * *
76738798 AAAGGGTTCGGCCTAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76738829 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
76738860 AAAGGTTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
76738891 AAAGACTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
76738908 AACCGTTAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:76741543 original size:28 final size:27
Alignment explanation
Indices: 76741501--76741611 Score: 109
Period size: 27 Copynumber: 4.1 Consensus size: 27
76741491 GGAGGAAGCG
*
76741501 TTCTAGTGGCCATGCCACAAATATCTGT
1 TTCTAGTGGCTATGCCAC-AATATCTGT
*
76741529 TTCTGGTGGCTATGCCACAAATATCTG-
1 TTCTAGTGGCTATGCCAC-AATATCTGT
* *
76741556 TTCTAATGGCTCTGCCACAATATCTGT
1 TTCTAGTGGCTATGCCACAATATCTGT
* * * *
76741583 ATCT-GCTGACTCTGTCACAATATCTGT
1 TTCTAG-TGGCTATGCCACAATATCTGT
76741610 TT
1 TT
76741612 TGGCAGCCGT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
26 8 0.11
27 38 0.54
28 25 0.35
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (27 bp):
TTCTAGTGGCTATGCCACAATATCTGT
Found at i:76741602 original size:54 final size:54
Alignment explanation
Indices: 76741500--76741610 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
76741490 TGGAGGAAGC
* * * *
76741500 GTTCTAGTGGCCATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTAATGGCCATGCCACAAATATCTGTATCTGCTGACTATGCCAC-AATATCT
* *
76741555 GTTCTAATGGCTC-TGCCAC-AATATCTGTATCTGCTGACTCTGTCACAATATCT
1 GTTCTAATGGC-CATGCCACAAATATCTGTATCTGCTGACTATGCCACAATATCT
76741608 GTT
1 GTT
76741611 TTGGCAGCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 10 0.20
54 22 0.45
55 16 0.33
56 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
GTTCTAATGGCCATGCCACAAATATCTGTATCTGCTGACTATGCCACAATATCT
Found at i:76748108 original size:43 final size:43
Alignment explanation
Indices: 76747943--76748110 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 43
76747933 ATATCGTACA
* * * *
76747943 ATGCCAACGTCCCAGACGTTGTCTTACATGCTG-TCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AGATCACATATCG
* * * * *
76747986 AGGTC-ACTGTCCTAGACAAGGTCTTACACGA-ATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAGATCACATATCG
*
76748027 ATGCCAATGTCCCAGACATGGTCTTACACGTAG-TCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AGATCACATATCG
* ** *
76748070 ATGCCAACGTCTCAGATGTGGTCTTACACGAGAACACATAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGAGATCACATAT
76748111 AGGAAATCCT
Statistics
Matches: 98, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
41 25 0.26
42 18 0.18
43 55 0.56
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAGATCACATATCG
Found at i:76753735 original size:38 final size:38
Alignment explanation
Indices: 76753675--76753981 Score: 420
Period size: 38 Copynumber: 8.1 Consensus size: 38
76753665 ATATTTGATG
* ** * *
76753675 TATATCTGGGTTAAATCTCGCAGGCTTCGTGCTAGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
** *
76753713 TATATCTAGGTTTTATCCCGCAGGCTTCGTGCTTGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
*
76753751 TATATCCGGGTTTTATCCCGCAGGTTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
76753789 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
76753827 TATATCCGGG-TTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* * *
76753864 TATATCCGGG-TATATCCCGCAGGCTTTGTGCCGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* ** *
76753901 TATCTTTGGGTTTTATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
** * *
76753939 TATATCCGGGTTAAATCCTGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
76753977 TATAT
1 TATAT
76753982 TCGAGCTTAA
Statistics
Matches: 242, Mismatches: 26, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
37 68 0.28
38 174 0.72
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.38
Consensus pattern (38 bp):
TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
Found at i:76753965 original size:150 final size:152
Alignment explanation
Indices: 76753675--76754011 Score: 435
Period size: 150 Copynumber: 2.2 Consensus size: 152
76753665 ATATTTGATG
* * * *
76753675 TATATCTGGGTTAAATCTCGCAGGCTTCGTGCTAGTATTATATCTAGGTTTTATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCTAGGGTATATCCCGCAGGCTT
** * **
76753740 CGTGCTTGTATTATATCCGGGTTTTATCCCGCAGGTTTCGTGCTGGTATTATATCCGGGTTTTAT
66 CGTGCCGGTATTATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
*
76753805 CCCGCAGGCTTCGTGCTGGTAT
131 CCCGCAGGCTTAGTGCTGGTAT
* * *
76753827 TATATCCGGGTT-TATCCCGCAGGCTTCGTGCTGGTATTATATC-CGGGTATATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCTAGGGTATATCCCGCAGGCTT
* * ** *
76753890 TGTGCCGGTATTATCTTTGGGTTTTATCCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
66 CGTGCCGGTATTATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
*
76753955 CCTGCAGGCTTAGTGCTGGTAT
131 CCCGCAGGCTTAGTGCTGGTAT
* * * *
76753977 TATATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCT
1 TATATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCT
76754012 GGTGACTGGG
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
150 99 0.63
151 31 0.20
152 12 0.08
153 16 0.10
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.38
Consensus pattern (152 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCTAGGGTATATCCCGCAGGCTT
CGTGCCGGTATTATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
CCCGCAGGCTTAGTGCTGGTAT
Found at i:76758957 original size:40 final size:40
Alignment explanation
Indices: 76758883--76759104 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
76758873 AACCCAAGTA
* *
76758883 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
76758922 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
76758962 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
76759002 CCTTCGGGACTTAGCCTGGATATAGTTAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
76759042 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
76759082 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
76759105 CATTCGAATA
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 152 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:76767066 original size:43 final size:43
Alignment explanation
Indices: 76767018--76767180 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
76767008 ATCGAGATGT
* *
76767018 GATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * *
76767061 GATTACGTGTAATACCATGTCTCGGACATTGGCATCGTA-TGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * * ** *
76767103 TAATTTCGTGTAAGACTTTGTCTGGGACAATGGCATCG-ATATGTA
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TG-A
* * *
76767148 -TTTACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
76767181 TGTACGAGTT
Statistics
Matches: 97, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
42 10 0.10
43 84 0.87
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:76769169 original size:67 final size:68
Alignment explanation
Indices: 76769009--76769251 Score: 290
Period size: 68 Copynumber: 3.6 Consensus size: 68
76768999 CCTGCAAGAA
* * *
76769009 TGTAAGACCATAGCTGGACTATGGCAACGTATGAAGTCCGCCAGGACAGTAAACATGACATCATA
1 TGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCCACCAGGACAGTAAACATGACATCATA
76769074 TAG
66 TAG
* * * * * * ** *
76769077 TGTAAGACCATAGTTGGGCTGTGGCAACATATGAATTCTACTAGGACCGTTTACATGA-ATTATA
1 TGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCCACCAGGACAGTAAACATGACATCATA
76769141 TAG
66 TAG
* ** * * * * *
76769144 TGTAAGACCATAGCTGGGTTATGGCAACGCATGATGTCCGCCAGGATAGTAAACGTGGCATCATA
1 TGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCCACCAGGACAGTAAACATGACATCATA
76769209 TAG
66 TAG
*
76769212 TGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCA
1 TGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCCA
76769252 TTAGGACATT
Statistics
Matches: 139, Mismatches: 35, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
67 50 0.36
68 89 0.64
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (68 bp):
TGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCCACCAGGACAGTAAACATGACATCATA
TAG
Found at i:76769257 original size:135 final size:135
Alignment explanation
Indices: 76769009--76769258 Score: 383
Period size: 135 Copynumber: 1.9 Consensus size: 135
76768999 CCTGCAAGAA
*
76769009 TGTAAGACCATAGCTGGACTATGGCAACGTATGAAGTCCGCCAGGACAGTAAACATGACATCATA
1 TGTAAGACCATAGCTGGACTATGGCAACGCATGAAGTCCGCCAGGACAGTAAACATGACATCATA
* * * * *
76769074 TAGTGTAAGACCATAGTTGGGCTGTGGCAACATATGAATTCTACTAGGACCGTTTACATGAATTA
66 TAGTGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCACTAGGACCGTTTACATGAATTA
76769139 TATAG
131 TATAG
** * * * *
76769144 TGTAAGACCATAGCTGGGTTATGGCAACGCATGATGTCCGCCAGGATAGTAAACGTGGCATCATA
1 TGTAAGACCATAGCTGGACTATGGCAACGCATGAAGTCCGCCAGGACAGTAAACATGACATCATA
*
76769209 TAGTGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCATTAGGAC
66 TAGTGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCACTAGGAC
76769259 ATTGAACTAG
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
135 102 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (135 bp):
TGTAAGACCATAGCTGGACTATGGCAACGCATGAAGTCCGCCAGGACAGTAAACATGACATCATA
TAGTGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCACTAGGACCGTTTACATGAATTA
TATAG
Found at i:76772665 original size:22 final size:22
Alignment explanation
Indices: 76772640--76772687 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
76772630 CATGATTTTT
76772640 TCAAAATGACATACTTAAAGGA
1 TCAAAATGACATACTTAAAGGA
*
76772662 TCAAAATTACATACTTAAAGGA
1 TCAAAATGACATACTTAAAGGA
76772684 -CAAA
1 TCAAA
76772688 TGGACTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.52, C:0.15, G:0.10, T:0.23
Consensus pattern (22 bp):
TCAAAATGACATACTTAAAGGA
Found at i:76774222 original size:6 final size:6
Alignment explanation
Indices: 76774211--76774409 Score: 205
Period size: 6 Copynumber: 32.8 Consensus size: 6
76774201 AACCAAAATG
*
76774211 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
76774259 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
76774308 AGAATC AGTAAT- AGAATC AGAATC AGAATC AGAATC AGAATC AGTATT
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* *
76774356 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
76774405 AGAAT
1 AGAAT
76774410 GTGAATGCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 32
0.78 0.07 0.15
Matches are distributed among these distances:
5 12 0.07
6 137 0.84
7 11 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:76774348 original size:97 final size:97
Alignment explanation
Indices: 76774211--76774409 Score: 357
Period size: 97 Copynumber: 2.1 Consensus size: 97
76774201 AACCAAAATG
76774211 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
76774276 CAGAATCAGAATTAGGTGACAGAATCAGAATC
66 CAGAATCAGAATTAGGTGACAGAATCAGAATC
*
76774308 AGAATCAGTAAT-AGAATCAG-AATCAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGA
1 AGAATCAG-AATCAGAATCAGTAA-CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGA
76774371 ATCAGAATCAGAATTAGGTGACAGAATCAGAATC
64 ATCAGAATCAGAATTAGGTGACAGAATCAGAATC
76774405 AGAAT
1 AGAAT
76774410 GTGAATGCAA
Statistics
Matches: 99, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
96 2 0.02
97 94 0.95
98 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (97 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGACAGAATCAGAATC
Found at i:76774561 original size:26 final size:25
Alignment explanation
Indices: 76774527--76774596 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 25
76774517 AGCATGTCTG
76774527 CCAGAACAGATATTGTGACAGAGTA
1 CCAGAACAGATATTGTGACAGAGTA
* *
76774552 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAG-TA
*
76774579 CCAGAATCAGATAATGTG
1 CCAGAA-CAGATATTGTG
76774597 GCAAACCCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
25 5 0.13
26 18 0.46
27 16 0.41
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (25 bp):
CCAGAACAGATATTGTGACAGAGTA
Found at i:76774589 original size:27 final size:26
Alignment explanation
Indices: 76774527--76774599 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
76774517 AGCATGTCTG
* *
76774527 CCAGAA-CAGATATTGTGACAGAGTA
1 CCAGAATCAGATATTGTGGCAGAGCA
76774552 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATATTGTGGCAGAG-CA
*
76774579 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATATTGTGGCA
76774600 AACCCACCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.02
25 4 0.10
26 16 0.39
27 18 0.44
28 2 0.05
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (26 bp):
CCAGAATCAGATATTGTGGCAGAGCA
Found at i:76774606 original size:27 final size:27
Alignment explanation
Indices: 76774551--76774607 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
76774541 GTGACAGAGT
* * *
76774551 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGATACAGATAATGTGGCAAACCC
76774578 ACCAGA-ATCAGATAATGTGGCAAACCC
1 ACCAGATA-CAGATAATGTGGCAAACCC
76774605 ACC
1 ACC
76774608 TGACAGAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (27 bp):
ACCAGATACAGATAATGTGGCAAACCC
Found at i:76774812 original size:22 final size:22
Alignment explanation
Indices: 76774764--76774822 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
76774754 GTAAATACGT
*
76774764 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
76774786 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
76774808 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
76774823 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:76774975 original size:27 final size:26
Alignment explanation
Indices: 76774910--76774992 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
76774900 TCGATCGGTC
* * *
76774910 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
76774936 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
76774963 AACAAATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
76774990 AAC
1 AAC
76774993 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.14
27 43 0.86
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:76775222 original size:27 final size:27
Alignment explanation
Indices: 76775192--76775360 Score: 110
Period size: 27 Copynumber: 6.3 Consensus size: 27
76775182 GGGCAAAATG
* *
76775192 GTAATTTTACCCCACAAAGGTATCTCA
1 GTAATTTTACCCTACAAGGGTATCTCA
* * *
76775219 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATCTCA
*
76775246 GT-ATTTCTACCCTACAAGGGTATTTC-
1 GTAATTT-TACCCTACAAGGGTATCTCA
* * * **
76775272 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTTTACCCTACAAGGGTATCTCA
* * * * *
76775300 GTAATTCTATCCTATAGGGGTATTTC-
1 GTAATTTTACCCTACAAGGGTATCTCA
* * * *
76775326 GAAAATTCTACCCTATAAGGGTATTTCA
1 G-TAATTTTACCCTACAAGGGTATCTCA
76775354 GTAATTT
1 GTAATTT
76775361 CACAATCAAG
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.04
27 108 0.92
28 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATCTCA
Found at i:76775257 original size:54 final size:53
Alignment explanation
Indices: 76775195--76775356 Score: 155
Period size: 54 Copynumber: 3.0 Consensus size: 53
76775185 CAAAATGGTA
76775195 ATTTTACCCCACAAAGGTATCTC-AGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTTACCCCACAAAGGTATCTCGA-TAATTCTACCCTACAGGGGTATTTCAGT
* * * **
76775248 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGT
1 ATTT-TACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGT
* * * * ** * * * *
76775302 AATTCTATCCTATAGGGGTATTTCGAAAATTCTACCCTATAAGGGTATTTCAGT
1 -ATTTTACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGT
76775356 A
1 A
76775357 ATTTCACAAT
Statistics
Matches: 92, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
53 5 0.05
54 83 0.90
55 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (53 bp):
ATTTTACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGT
Found at i:76775358 original size:54 final size:54
Alignment explanation
Indices: 76775221--76775359 Score: 197
Period size: 54 Copynumber: 2.6 Consensus size: 54
76775211 GTATCTCAGT
* *
76775221 AATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGAT
1 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAA
** * * *
76775275 AATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAGGGGTATTTCGAA
1 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAA
* *
76775329 AATTCTACCCTATAAGGGTATTTCAGTAATT
1 AATTCTACCCTACAGGGGTATTTCAGTAATT
76775360 TCACAATCAA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 74 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (54 bp):
AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAA
Found at i:76775400 original size:27 final size:27
Alignment explanation
Indices: 76775364--76775746 Score: 439
Period size: 27 Copynumber: 14.2 Consensus size: 27
76775354 GTAATTTCAC
* *
76775364 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
76775391 AATCGAGGGTAAAACGATAATTTTGCA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76775418 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
76775445 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76775472 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
76775499 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76775526 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
76775553 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76775580 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
76775607 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
76775634 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
76775661 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76775688 AATCGAGGGTAAAACGGTAATTCAGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76775715 AATCAAGGGTAAAACGGTAATTCTGCA
1 AATCGAGGGTAAAACGGTAATTCTGTA
76775742 AATCG
1 AATCG
76775747 GGAGTACTTT
Statistics
Matches: 303, Mismatches: 47, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 298 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:76775508 original size:108 final size:108
Alignment explanation
Indices: 76775354--76775743 Score: 552
Period size: 108 Copynumber: 3.6 Consensus size: 108
76775344 GGGTATTTCA
* * * *
76775354 GTAATTTCAC-AATCAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTTTGC
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-GAGTAATTCTGC
* * *
76775417 AAACTGAGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAACG
65 AAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * * *
76775461 GTAATTTTACAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAGAGTAATTCTGCA
*
76775526 AACTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
66 AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
76775569 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAGAGTAATTCTGCA
*
76775634 AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
66 AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
76775677 GTAATTTTAAAAATCGAGGGTAAAACGGTAATTCAGTAAATCAAGGGTAAAACG-GTAATTCTGC
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-GAGTAATTCTGC
76775741 AAA
65 AAA
76775744 TCGGGAGTAC
Statistics
Matches: 257, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
107 10 0.04
108 247 0.96
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (108 bp):
GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAGAGTAATTCTGCA
AACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:76775745 original size:54 final size:54
Alignment explanation
Indices: 76775364--76775746 Score: 484
Period size: 54 Copynumber: 7.1 Consensus size: 54
76775354 GTAATTTCAC
* * *
76775364 AATCAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGCA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGCA
* * * *
76775418 AA-CTGAGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACA
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGCA
* * ** *
76775472 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGCA
* *
76775526 AA-CTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACA
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGCA
* * ** * *
76775580 AATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGCA
* **
76775634 AA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAA
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGCA
* * *
76775688 AATCGAGGGTAAAACGGTAATTCAGTAAATCAAGGGTAAAACGGTAATTCTGCA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGCA
76775742 AATCG
1 AATCG
76775747 GGAGTACTTT
Statistics
Matches: 282, Mismatches: 41, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
53 3 0.01
54 276 0.98
55 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGCA
Found at i:76775790 original size:81 final size:81
Alignment explanation
Indices: 76775477--76775779 Score: 281
Period size: 81 Copynumber: 3.7 Consensus size: 81
76775467 TTACAAATCG
* * * * ** *
76775477 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAA-CTGAGGGTAAAAC
1 AGGGTAAAACGGTAATTCTGCAAATCGAGGGTAAAATGGTAATTTTAAAAATC-GAGGGCAAAAC
* ** *
76775541 GGTAATTTTGTAAA-TCG
65 AGTAATTCAGTAAACT-A
* * * * * * * *
76775558 AGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATA
1 AGGGTAAAACGGTAATTCTGCAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGCAAAACA
* *
76775623 GTAATTCTGTAAACTG
66 GTAATTCAGTAAACTA
* * *
76775639 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACG
1 AGGGTAAAACGGTAATTCTGCAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGCAAAACA
76775704 GTAATTCAGTAAA-TCA
66 GTAATTCAGTAAACT-A
*** * *
76775720 AGGGTAAAACGGTAATTCTGCAAATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGGCA
1 AGGGTAAAACGGTAATTCTGCAAATCGAGG-GTAAAATGGTAATTTTAAAAATCGAGGGCA
76775780 TTTCAGTAAT
Statistics
Matches: 189, Mismatches: 29, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
80 3 0.02
81 185 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
AGGGTAAAACGGTAATTCTGCAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGCAAAACA
GTAATTCAGTAAACTA
Found at i:76776713 original size:27 final size:27
Alignment explanation
Indices: 76776618--76776713 Score: 131
Period size: 27 Copynumber: 3.6 Consensus size: 27
76776608 TAGGCCCACA
* * * *
76776618 ATTTTGGTAATTTTAC-AAACTAGGGGC
1 ATTTTGGTAATTTTTCTAATCGA-GGGT
*
76776645 ATTTTGGTAATTTTGCTAATCGAGGGT
1 ATTTTGGTAATTTTTCTAATCGAGGGT
76776672 ATTTTGGTAATTTTTCTAATCGAGGGT
1 ATTTTGGTAATTTTTCTAATCGAGGGT
76776699 ATTTTGGTAATTTTT
1 ATTTTGGTAATTTTT
76776714 TAAACCAAGG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 59 0.94
28 4 0.06
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.47
Consensus pattern (27 bp):
ATTTTGGTAATTTTTCTAATCGAGGGT
Found at i:76776724 original size:27 final size:27
Alignment explanation
Indices: 76776618--76776755 Score: 111
Period size: 27 Copynumber: 5.1 Consensus size: 27
76776608 TAGGCCCACA
** * * *
76776618 ATTTTGGTAATTTTACAAACTAGGGGC
1 ATTTTGGTAATTTTTTAAACCAAGGGT
* * *
76776645 ATTTTGGTAATTTTGCT-AATCGAGGGT
1 ATTTTGGTAATTTT-TTAAACCAAGGGT
* *
76776672 ATTTTGGTAATTTTTCT-AATCGAGGGT
1 ATTTTGGTAATTTTT-TAAACCAAGGGT
76776699 ATTTTGGTAATTTTTTAAACCAAGGGT
1 ATTTTGGTAATTTTTTAAACCAAGGGT
** * *
76776726 A-TTCAGTAGTTTTGTAAACCAAGGGT
1 ATTTTGGTAATTTTTTAAACCAAGGGT
76776752 ATTT
1 ATTT
76776756 CAGTAATTCT
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 23 0.25
27 70 0.75
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.43
Consensus pattern (27 bp):
ATTTTGGTAATTTTTTAAACCAAGGGT
Found at i:76776725 original size:54 final size:54
Alignment explanation
Indices: 76776618--76776728 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 54
76776608 TAGGCCCACA
* * *
76776618 ATTTTGGTAATTTTACAAACTAGGGGCATTTTGGTAATTTTGCTAATCGAGGGT
1 ATTTTGGTAATTTTACAAACGAGGGGCATTTTGGTAATTTTGCTAACCAAGGGT
* * * *
76776672 ATTTTGGTAATTTTTCTAATCGA-GGGTATTTTGGTAATTTT-TTAAACCAAGGGT
1 ATTTTGGTAATTTTAC-AAACGAGGGGCATTTTGGTAATTTTGCT-AACCAAGGGT
76776726 ATT
1 ATT
76776729 CAGTAGTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
53 1 0.02
54 43 0.90
55 4 0.08
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (54 bp):
ATTTTGGTAATTTTACAAACGAGGGGCATTTTGGTAATTTTGCTAACCAAGGGT
Found at i:76776743 original size:26 final size:27
Alignment explanation
Indices: 76776694--76776760 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 27
76776684 TTTCTAATCG
** * *
76776694 AGGGTATTTTGGTAATTTTTTAAACCA
1 AGGGTATTTCAGTAGTTTTGTAAACCA
76776721 AGGGTA-TTCAGTAGTTTTGTAAACCA
1 AGGGTATTTCAGTAGTTTTGTAAACCA
76776747 AGGGTATTTCAGTA
1 AGGGTATTTCAGTA
76776761 ATTCTACCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 22 0.63
27 13 0.37
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAGTTTTGTAAACCA
Found at i:76776782 original size:27 final size:27
Alignment explanation
Indices: 76776752--76776825 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
76776742 AACCAAGGGT
76776752 ATTTCAGTAATTCTACCCTATAGGGGC
1 ATTTCAGTAATTCTACCCTATAGGGGC
* *
76776779 ATTTCAGTAATTTTACCCTATAGGGGT
1 ATTTCAGTAATTCTACCCTATAGGGGC
* *
76776806 ATTTCAGTAATACTAGCCTA
1 ATTTCAGTAATTCTACCCTA
76776826 CAGATATGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTATAGGGGC
Found at i:76797185 original size:13 final size:13
Alignment explanation
Indices: 76797157--76797193 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
76797147 TCAATATTTA
*
76797157 AATTTACATCATTC
1 AATTT-CATGATTC
76797171 AATTTCATGATTC
1 AATTTCATGATTC
76797184 AATTTCATGA
1 AATTTCATGA
76797194 CCAAAACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.43
Consensus pattern (13 bp):
AATTTCATGATTC
Found at i:76799581 original size:17 final size:17
Alignment explanation
Indices: 76799559--76799591 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76799549 CACTAAAATG
*
76799559 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
76799576 AAAATGCAATGACAAT
1 AAAATGCAATGACAAT
76799592 GTATATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:76809219 original size:30 final size:30
Alignment explanation
Indices: 76809184--76809244 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76809174 TCCTTAACTC
76809184 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
76809214 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
76809244 A
1 A
76809245 GGCTCAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:76811662 original size:20 final size:20
Alignment explanation
Indices: 76811637--76811677 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
76811627 GTGACATTTC
76811637 TCACCAAATAGATAGTGGCG
1 TCACCAAATAGATAGTGGCG
76811657 TCACCAAATAGATAGTGGCG
1 TCACCAAATAGATAGTGGCG
76811677 T
1 T
76811678 AAAATCTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (20 bp):
TCACCAAATAGATAGTGGCG
Found at i:76821080 original size:27 final size:27
Alignment explanation
Indices: 76821044--76821508 Score: 469
Period size: 27 Copynumber: 17.3 Consensus size: 27
76821034 TTACACTACA
*
76821044 AGGGAATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
76821071 GGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
76821098 AGGGTATTTC-AGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
76821125 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
76821152 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
76821179 AGGGT-CTTCTGGTAATTTTACAAATTG
1 AGGGTATTTC-GATAATTTTACAAATCG
* * * * * *
76821206 AAGGTGTTTCGAAAATTTCAAAAATAG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
76821233 GGGGTATTTCAATAGTTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
** *
76821260 AGGGTATTTTAATAA-TTT-CATAATTG
1 AGGGTATTTCGATAATTTTACA-AATCG
* *
76821286 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
76821313 AGGGTGTTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
76821340 AGGGTGTTTTGATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
76821366 -GGGATATTTTGATAATTTTACAAATTG
1 AGGG-TATTTCGATAATTTTACAAATCG
76821393 AGGGTATTTC-AGTAATTTTAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
76821419 AGGGTATTTTGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
76821446 AGGGTATTTCAATAATTTCACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
76821473 GGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
76821500 AGGGTATTT
1 AGGGTATTT
76821509 TAGTAATTTC
Statistics
Matches: 367, Mismatches: 58, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
25 5 0.01
26 67 0.18
27 287 0.78
28 8 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:76821339 original size:80 final size:81
Alignment explanation
Indices: 76821044--76821517 Score: 521
Period size: 81 Copynumber: 5.9 Consensus size: 81
76821034 TTACACTACA
* * *
76821044 AGGGAATTTCGATAATTTTACAAATCGGGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTA
76821109 GTAATTTTACAAATTG
66 GTAATTTTACAAATTG
* * * * *
76821125 AGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTCTTCTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTA
76821190 GTAATTTTACAAATTG
66 GTAATTTTACAAATTG
* * * * * * * * * *
76821206 AAGGTGTTTCGAAAATTTCAAAAATAGGGGGTATTTCAATAGTTTTACAAATCGAGGGTATTTTA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTA
*
76821271 ATAA-TTT-CATAATTG
66 GTAATTTTACA-AATTG
* * * *
76821286 AGGGTATTTTGGTAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCGAGGGTGTTTT-
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTA
* *
76821350 GATAATTTCAC-AATCG
66 G-TAATTTTACAAATTG
* * *
76821366 -GGGATATTTTGATAATTTTACAAATTGAGGGTATTTC-AGTAATTTTAC-AATCGAGGGTATTT
1 AGGG-TATTTCGATAATTTTACAAATCGAGGGTGTTTCGA-TAATTTTACAAATCGAGGGTATTT
* **
76821428 TGGTAATTTTACAAATCA
64 TAGTAATTTTACAAATTG
* * * * * * *
76821446 AGGGTATTTCAATAATTTCACAAATTGGGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTTA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTA
76821511 GTAATTT
66 GTAATTT
76821518 CTCTTTATTA
Statistics
Matches: 329, Mismatches: 53, Indels: 22
0.81 0.13 0.05
Matches are distributed among these distances:
79 28 0.09
80 146 0.44
81 154 0.47
82 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTA
GTAATTTTACAAATTG
Found at i:76825088 original size:28 final size:27
Alignment explanation
Indices: 76825014--76825091 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
76825004 TCTGGTACTA
* * *
76825014 ATTCTATAATGGACTTAGGCCCACCTG
1 ATTCTGTAATGGGCTTAGGCCCACCAG
*
76825041 ATTCTGTAATGGGATTAGGCCCACCAG
1 ATTCTGTAATGGGCTTAGGCCCACCAG
*
76825068 ATTCTGTTAATGGGCTAAGGCCCA
1 ATTCTG-TAATGGGCTTAGGCCCA
76825092 GTTTGTTTCT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 29 0.66
28 15 0.34
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (27 bp):
ATTCTGTAATGGGCTTAGGCCCACCAG
Found at i:76827773 original size:27 final size:27
Alignment explanation
Indices: 76827743--76827828 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
76827733 GCATCTGGTA
76827743 CTGATTCTGTAATAGGCTTAGGCCCAC
1 CTGATTCTGTAATAGGCTTAGGCCCAC
* * *
76827770 CTGATTCTGTAATTGGATTAGGCACAC
1 CTGATTCTGTAATAGGCTTAGGCCCAC
* * *
76827797 CAGATTCTGTTAATGGGCTAAGG-CCAC
1 CTGATTCTG-TAATAGGCTTAGGCCCAC
76827824 CTGAT
1 CTGAT
76827829 ACGGTGTCTG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 39 0.80
28 10 0.20
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTAATAGGCTTAGGCCCAC
Found at i:76836038 original size:15 final size:15
Alignment explanation
Indices: 76836018--76836048 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76836008 AAATATGAAA
76836018 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
76836033 GATATGTTTTGTATT
1 GATATGTTTTGGATT
76836048 G
1 G
76836049 GAATTTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:76836660 original size:45 final size:45
Alignment explanation
Indices: 76836596--76836685 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
76836586 GGAATTATGC
*
76836596 TATGTGTTTTCGTGTAAGACCATGTCTGGGATATTGGCAACGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCAACGATA
* * *
76836641 TATGTGTTTTCGTGTAAGACCATGTTTGGGACGTTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCAACGATA
76836686 CGTTGTTACA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.37
Consensus pattern (45 bp):
TATGTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCAACGATA
Found at i:76837571 original size:25 final size:25
Alignment explanation
Indices: 76837543--76837612 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
76837533 CTCTTTTAAT
*
76837543 AACTGGGGCAAAGCTCTTTTC-GATA
1 AACTGGGGCAAAGCCCTTTTCAG-TA
76837568 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
76837593 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76837613 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 41 0.98
26 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGTA
Found at i:76837879 original size:27 final size:26
Alignment explanation
Indices: 76837846--76837950 Score: 138
Period size: 27 Copynumber: 3.9 Consensus size: 26
76837836 GGTGTCTCAC
76837846 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTC-G
* * *
76837873 TATTTCTACCCTACAAGGATATTTCG
1 TAATTCTACCCTACAGGGGTATTTCG
* *
76837899 ATAATTCTACCCGACAGGGGTATTGCGG
1 -TAATTCTACCCTACAGGGGTATTTC-G
76837927 TAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
76837951 TGATATTTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 1 0.02
27 64 0.97
28 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (26 bp):
TAATTCTACCCTACAGGGGTATTTCG
Found at i:76837883 original size:54 final size:54
Alignment explanation
Indices: 76837821--76837948 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 54
76837811 CAAAATGGTA
* * * *
76837821 ATTT-TACCCCACAAGGGTGTCTC-ACTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATCTCGA-TAATTCTACCCGACAGGGGTATTGCAGT
* * *
76837874 ATTTCTACCCTACAAGGATATTTCGATAATTCTACCCGACAGGGGTATTGCGGT
1 ATTTCTACCCTACAAGGGTATCTCGATAATTCTACCCGACAGGGGTATTGCAGT
* *
76837928 AATTCTACCCTACAGGGGTAT
1 ATTTCTACCCTACAAGGGTAT
76837949 TTTGATATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.06
54 58 0.92
55 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATCTCGATAATTCTACCCGACAGGGGTATTGCAGT
Found at i:76837950 original size:54 final size:54
Alignment explanation
Indices: 76837846--76837955 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
76837836 GGTGTCTCAC
* * *
76837846 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGATATTTCGA
1 TAATTCTACCCGACAGGGGTATTGCAGTAATTCTACCCTACAAGGATATTTCGA
* * * *
76837900 TAATTCTACCCGACAGGGGTATTGCGGTAATTCTACCCTACAGGGGTATTTTGA
1 TAATTCTACCCGACAGGGGTATTGCAGTAATTCTACCCTACAAGGATATTTCGA
76837954 TA
1 TA
76837956 TTTTACAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (54 bp):
TAATTCTACCCGACAGGGGTATTGCAGTAATTCTACCCTACAAGGATATTTCGA
Found at i:76838010 original size:27 final size:27
Alignment explanation
Indices: 76837980--76838093 Score: 93
Period size: 27 Copynumber: 4.2 Consensus size: 27
76837970 AGTATTTCAA
** *
76837980 TAATTTCACAAATTAGGGGTATTTTGG
1 TAATTTCACAAACCAAGGGTATTTTGG
* *
76838007 TAATTTTACAAGCCAAGGGTATTTTGG
1 TAATTTCACAAACCAAGGGTATTTTGG
* *** * *
76838034 TAATTTTATTGATCGAGGGTATTTTGG
1 TAATTTCACAAACCAAGGGTATTTTGG
*** *
76838061 TAATTTTGTAAACCAAGGGTATTTTAG
1 TAATTTCACAAACCAAGGGTATTTTGG
76838088 TAATTT
1 TAATTT
76838094 TGTAAATCGA
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
TAATTTCACAAACCAAGGGTATTTTGG
Found at i:76838094 original size:27 final size:27
Alignment explanation
Indices: 76837996--76838108 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 27
76837986 CACAAATTAG
* *
76837996 GGGTATTTTGGTAATTTTACAAGCCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
** * *
76838023 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
76838050 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
76838077 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
76838104 GGGTA
1 GGGTA
76838109 AAACGGTAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.27, C:0.06, G:0.25, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:76838107 original size:81 final size:81
Alignment explanation
Indices: 76838031--76838262 Score: 257
Period size: 81 Copynumber: 2.9 Consensus size: 81
76838021 AAGGGTATTT
* ** * * *
76838031 TGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTG
1 TGGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTGTAAATCGAGGGTATTTTAGTAATTTTG
76838096 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* ** *** * * *
76838112 CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAATAATTCTA
1 TGGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTGTAAATCGAGGGTATTTTAGTAATTTTG
*
76838177 TAAATTGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * ** * * *
76838193 TGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTGG
1 TGGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTGTAAATCGAGGGTATTTTAGTAATTTTG
76838258 TAAAT
66 TAAAT
76838263 TAAAGTATTC
Statistics
Matches: 119, Mismatches: 32, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
81 119 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.37
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTGTAAATCGAGGGTATTTTAGTAATTTTG
TAAATCGAGGGTAAAA
Found at i:76838117 original size:27 final size:27
Alignment explanation
Indices: 76838087--76838216 Score: 188
Period size: 27 Copynumber: 4.8 Consensus size: 27
76838077 GGGTATTTTA
* *
76838087 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
76838114 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
76838141 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
76838168 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
76838195 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
76838217 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:76838223 original size:27 final size:27
Alignment explanation
Indices: 76838031--76838243 Score: 183
Period size: 27 Copynumber: 7.9 Consensus size: 27
76838021 AAGGGTATTT
* ** ***
76838031 TGGTAATTTTATTGATCGAGGGTATTT
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* * ***
76838058 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTGTAAATCGAGGGTAAAA
*
76838085 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* * *
76838112 CGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
76838139 TGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
** * * *
76838166 TAATAATTCTATAAATTGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* ***
76838193 TGGTAATTCTGTAAATCGAGGGTACTT
1 TGGTAATTTTGTAAATCGAGGGTAAAA
** *
76838220 TGGTAATTTTACAAATTGAGGGTA
1 TGGTAATTTTGTAAATCGAGGGTA
76838244 TTTCAGTAAT
Statistics
Matches: 152, Mismatches: 34, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (27 bp):
TGGTAATTTTGTAAATCGAGGGTAAAA
Found at i:76838227 original size:54 final size:54
Alignment explanation
Indices: 76838087--76838243 Score: 224
Period size: 54 Copynumber: 2.9 Consensus size: 54
76838077 GGGTATTTTA
* *
76838087 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATG
**
76838141 GTAATTTTGTAAATCGAGGGTAAAATAATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATG
* *** * *
76838195 GTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGGTA
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTA
76838244 TTTCAGTAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATG
Found at i:76838261 original size:54 final size:53
Alignment explanation
Indices: 76837955--76838262 Score: 177
Period size: 54 Copynumber: 5.7 Consensus size: 53
76837945 GTATTTTGAT
* * *** * *
76837955 ATTTTACAAATCGAGAGTATTTCAATAATTTCACAAAT-TAGGGGTATTTTGGTA
1 ATTTTACAAATCGAGGGTATTT-AGTAATTTTGTAAATCGA-GGGTAATTTGGTA
** * * * ** *
76838009 ATTTTACAAGCCAAGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTA
1 ATTTTACAAATCGAGGGTA-TTTAGTAATTTTGTAAATCGAGGGTAATTTGGTA
** * * ***
76838063 ATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTA
1 ATTTTACAAATCGAGGGTA-TTTAGTAATTTTGTAAATCGAGGGTAATTTGGTA
* * ** * ** **
76838117 ATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAATA
1 ATTTTACAAATCGAGGGT-ATTTAGTAATTTTGTAAATCGAGGGTAATTTGGTA
* * * ** * * *
76838171 ATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTACTTTGGTA
1 ATTTTACAAATCGAGGGT-ATTTAGTAATTTTGTAAATCGAGGGTAATTTGGTA
* *
76838225 ATTTTACAAATTGAGGGTATTTCAGTAATTTGGTAAAT
1 ATTTTACAAATCGAGGGTATTT-AGTAATTTTGTAAAT
76838263 TAAAGTATTC
Statistics
Matches: 204, Mismatches: 46, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
53 2 0.01
54 197 0.97
55 5 0.02
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.37
Consensus pattern (53 bp):
ATTTTACAAATCGAGGGTATTTAGTAATTTTGTAAATCGAGGGTAATTTGGTA
Found at i:76841765 original size:15 final size:15
Alignment explanation
Indices: 76841745--76841775 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76841735 TTGAAACCAG
76841745 TGATGTTTCAAATGC
1 TGATGTTTCAAATGC
76841760 TGATGTTTCAAATGC
1 TGATGTTTCAAATGC
76841775 T
1 T
76841776 ACAAATGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (15 bp):
TGATGTTTCAAATGC
Found at i:76843915 original size:24 final size:24
Alignment explanation
Indices: 76843883--76843930 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
76843873 GGATGAAGAA
76843883 AGTGAAGAAGTCATGGTTCTGGTG
1 AGTGAAGAAGTCATGGTTCTGGTG
76843907 AGTGAAGAAGTCATGGTTCTGGTG
1 AGTGAAGAAGTCATGGTTCTGGTG
76843931 GAAGTCGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.38, T:0.29
Consensus pattern (24 bp):
AGTGAAGAAGTCATGGTTCTGGTG
Found at i:76848747 original size:43 final size:43
Alignment explanation
Indices: 76848699--76848853 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 43
76848689 GTTGTTCTCA
* *
76848699 TGTAAGACCATGTCTAGGACGTTGGCATCGATAAATGATTACG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATATGATTACG
* * *
76848742 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATT-CG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATATGATTACG
* * * *
76848783 TGCAAGACCCTGTCTGGGTTA-G-TGGCATCGATATGTGATTACA
1 TGTAAGACCATGTCTGGG--ACGTTGGCATCGATATATGATTACG
* *
76848826 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
76848854 TGTACGATAT
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 26 0.28
42 16 0.17
43 50 0.54
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATATGATTACG
Found at i:76854896 original size:46 final size:47
Alignment explanation
Indices: 76854790--76854911 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 47
76854780 TGTCTTCGAC
** * *
76854790 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTATT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTATT
*
76854840 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGA-T
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCT-ATT
*
76854886 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
76854912 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
46 33 0.52
47 1 0.02
50 30 0.47
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTATT
Found at i:76855587 original size:12 final size:12
Alignment explanation
Indices: 76855570--76855595 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76855560 TGAACCCTAA
76855570 CTTAAATTATTG
1 CTTAAATTATTG
76855582 CTTAAATTATTG
1 CTTAAATTATTG
76855594 CT
1 CT
76855596 AGCATAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.50
Consensus pattern (12 bp):
CTTAAATTATTG
Found at i:76859296 original size:47 final size:48
Alignment explanation
Indices: 76859229--76859446 Score: 179
Period size: 47 Copynumber: 4.6 Consensus size: 48
76859219 ATTATGGGCT
* * *
76859229 AGTGTAAGA-CATGTCCGGGACAT-GCATCAGCTAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGA-AATGAGAGTC
* * * *
76859275 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATCGAAACGAGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTA-CGAAATGAGAGTC
* * * *
76859323 AGTGTAAGACAAT-CCTGGGACAT-GCAT-AGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCA-GCTACGAAATGAGAGTC
*
76859369 AGTGTAAGACCATGTCTGGGACATGGCATC-GAC-ATGAAAT-ATGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTACGAAATGA-GAGTC
* *
76859415 TAGTGTGAGACCGTGTCTGGGACATGGCATCA
1 -AGTGTAAGACCATGTCTGGGACATGGCATCA
76859447 ACATCTTACC
Statistics
Matches: 137, Mismatches: 22, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
46 37 0.27
47 69 0.50
48 30 0.22
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAAATGAGAGTC
Found at i:76859378 original size:46 final size:47
Alignment explanation
Indices: 76859229--76859393 Score: 128
Period size: 46 Copynumber: 3.5 Consensus size: 47
76859219 ATTATGGGCT
* * *
76859229 AGTGTAAGAC-ATGTCC-GGGACATGCATCA-GCTAC-ATTATGAGAGCC
1 AGTGTAAGACAATG-CCTGGGACATGCAT-AGGCTACGA-AATGATAGTC
* * * * *
76859275 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATCGAAACGAGT-GTT
1 AGTGTAAGACAATGCCTGGGACAT-GCATAGGCTA-CGAAATGA-TAGTC
*
76859323 AGTGTAAGACAAT-CCTGGGACATGCATAGGCTACGAGATGATAGTC
1 AGTGTAAGACAATGCCTGGGACATGCATAGGCTACGAAATGATAGTC
* *
76859369 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACAATGCCTGGGACATG
76859394 GCATCGACAT
Statistics
Matches: 94, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
45 1 0.01
46 38 0.40
47 31 0.33
48 23 0.24
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACAATGCCTGGGACATGCATAGGCTACGAAATGATAGTC
Found at i:76859435 original size:94 final size:96
Alignment explanation
Indices: 76859221--76859446 Score: 259
Period size: 94 Copynumber: 2.4 Consensus size: 96
76859211 TATGGGTTAT
* * *
76859221 TATGGGCTAGTGTAAGA-CATGTCCGGGACATGCATCAGCTACATTATGAGAGCCAGTGTAAGAC
1 TATGAGCTAGTGTAAGACCATGTCTGGGACATGCATCAGCTACATGATGAGAGCCAGTGTAAGAC
*
76859285 CATGTCTGGGACATGGCATCGGCATCGAAAC
66 CATGTCTGGGACATGGCATCGACATCGAAAC
* * * * * * *
76859316 GA-GTGTTAGTGTAAGACAAT-CCTGGGACATGCAT-AGGCTACGA-GATGATAGTCAGTGTAAG
1 TATGAGCTAGTGTAAGACCATGTCTGGGACATGCATCA-GCTAC-ATGATGAGAGCCAGTGTAAG
76859377 ACCATGTCTGGGACATGGCATCGACAT-GAAA-
64 ACCATGTCTGGGACATGGCATCGACATCGAAAC
* *
76859408 TATGAGCTAGTGTGAGACCGTGTCTGGGACATGGCATCA
1 TATGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCA
76859447 ACATCTTACC
Statistics
Matches: 107, Mismatches: 17, Indels: 13
0.78 0.12 0.09
Matches are distributed among these distances:
92 1 0.01
93 18 0.17
94 79 0.74
95 8 0.07
96 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (96 bp):
TATGAGCTAGTGTAAGACCATGTCTGGGACATGCATCAGCTACATGATGAGAGCCAGTGTAAGAC
CATGTCTGGGACATGGCATCGACATCGAAAC
Found at i:76886911 original size:48 final size:48
Alignment explanation
Indices: 76886838--76887209 Score: 374
Period size: 48 Copynumber: 7.7 Consensus size: 48
76886828 TGTGGGCCAA
* * *
76886838 TGTAAGACCATGTTTGGAATATGGCATCGGCATTAATATGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * * * * *
76886886 TGTAAGACCATATCTGGGACCTGGCATCGGGC-TCGATATGTGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATC-GGCATCAATATGAGAGCTAG
* * * *
76886934 TATAAGACCATGTTTGGAACATGGCATCAGCATTAATATGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * * * *
76886982 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATATGTGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * * *
76887030 TGTAAGACTATGTTTGGAACATGGCATCGGCGTTAATATGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
* * *
76887078 TGTAAGACTATGTTTAGGACATGGCATCGG-ACTCCACATCTG-G-GCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCA-T-CA-ATATGAGAGCTAG
* * * * *
76887126 TTTAAGACCATGTTTGGAACATGGCATCGACACTGATATATGAGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGGCA-TCA-ATATGAGAGCTAG
* *
76887176 TGTAAGACCATGTCTAGGACATGGCATCGGCATC
1 TGTAAGACCATGTTTGGGACATGGCATCGGCATC
76887210 TTACCCTTTG
Statistics
Matches: 260, Mismatches: 56, Indels: 15
0.79 0.17 0.05
Matches are distributed among these distances:
47 2 0.01
48 213 0.82
49 10 0.04
50 35 0.13
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGGCATCGGCATCAATATGAGAGCTAG
Found at i:76886990 original size:96 final size:96
Alignment explanation
Indices: 76886826--76887205 Score: 526
Period size: 96 Copynumber: 3.9 Consensus size: 96
76886816 ATATTAGGGT
* * *
76886826 TATGTGGGCCAATGTAAGACCATGTTTGGAATATGGCATCGGCATTAATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAA
* * * *
76886891 GACCATATCTGGGACCTGGCATCGGGCTCGA
66 GACCATGTCTAGGACATGGCATCGGACTCGA
* *
76886922 TATGTGAGCCAGTATAAGACCATGTTTGGAACATGGCATCAGCATTAATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAA
*
76886987 GACCATGTCTAGGACATGGCATCGGCCTCGA
66 GACCATGTCTAGGACATGGCATCGGACTCGA
* * *
76887018 TATGTGAGCTAGTGTAAGACTATGTTTGGAACATGGCATCGGCGTTAATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAA
* * *
76887083 GACTATGTTTAGGACATGGCATCGGACTCCA
66 GACCATGTCTAGGACATGGCATCGGACTCGA
* * * * * * * *
76887114 CATCTGGGCTAGTTTAAGACCATGTTTGGAACATGGCATCGACACTGATATATGAGAGCCAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA-TTA-ATATGAGAGCTAGTGT
76887179 AAGACCATGTCTAGGACATGGCATCGG
64 AAGACCATGTCTAGGACATGGCATCGG
76887206 CATCTTACCC
Statistics
Matches: 253, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
96 211 0.83
97 2 0.01
98 40 0.16
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAA
GACCATGTCTAGGACATGGCATCGGACTCGA
Found at i:76895748 original size:19 final size:18
Alignment explanation
Indices: 76895724--76895791 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 18
76895714 TTATGTGTTA
76895724 AAAATTCTAAAAAATAATT
1 AAAATTCTAAAAAA-AATT
*
76895743 AAAATT-TTAAAAAAATT
1 AAAATTCTAAAAAAAATT
*
76895760 AAAAATTC-AAAAGAAATTT
1 -AAAATTCTAAAA-AAAATT
*
76895779 AAAATTATAAAAA
1 AAAATTCTAAAAA
76895792 CTAAAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
17 4 0.10
18 22 0.54
19 15 0.37
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.29
Consensus pattern (18 bp):
AAAATTCTAAAAAAAATT
Found at i:76896227 original size:19 final size:20
Alignment explanation
Indices: 76896203--76896245 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
76896193 AAAATAGATT
* *
76896203 AATAATTTT-TTAGTTTTTA
1 AATAATTTTATGAGTTTTAA
76896222 AATAATTTTATGAGTTTTAA
1 AATAATTTTATGAGTTTTAA
76896242 AATA
1 AATA
76896246 TTTGGGAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
AATAATTTTATGAGTTTTAA
Found at i:76900757 original size:4 final size:4
Alignment explanation
Indices: 76900748--76900793 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
76900738 TACAAACTAT
*
76900748 TTTA TTTA TTCT- TTTA TTTA TTTA TTTA TTTA TTCA TTTA -TTA TTT
1 TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
76900794 CTTCAACCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 4 0.11
4 32 0.86
5 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:76901368 original size:30 final size:27
Alignment explanation
Indices: 76901305--76901369 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
76901295 TTCTTGATTT
*
76901305 ATATTATAAAAATATTATTTAATTAAA
1 ATATTATAAAAATATTATTAAATTAAA
* *
76901332 ATATTATAAATTATATTAATTAAAGTTAAG
1 ATATTATAAA-AATATT-ATTAAA-TTAAA
76901362 ATATTATA
1 ATATTATA
76901370 TTATAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 10 0.31
28 5 0.16
29 5 0.16
30 12 0.38
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (27 bp):
ATATTATAAAAATATTATTAAATTAAA
Found at i:76901723 original size:16 final size:16
Alignment explanation
Indices: 76901685--76901726 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
76901675 AGTGTATTAT
76901685 TATT-ATTATTAATTTA
1 TATTAATTA-TAATTTA
*
76901701 T-TAAATTATAATTTA
1 TATTAATTATAATTTA
76901716 TATTAATTATA
1 TATTAATTATA
76901727 TTATGAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTAATTATAATTTA
Found at i:76902036 original size:16 final size:16
Alignment explanation
Indices: 76902005--76902035 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76901995 ACATGGGAAG
76902005 GAAAGAAAGAAGAAAA
1 GAAAGAAAGAAGAAAA
76902021 GAAAGAAA-AAGAAAA
1 GAAAGAAAGAAGAAAA
76902036 ATTAAGGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
GAAAGAAAGAAGAAAA
Found at i:76902497 original size:21 final size:21
Alignment explanation
Indices: 76902473--76902533 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
76902463 GTCATATTTG
76902473 AGGCACCTTGTGTGTCGTATC
1 AGGCACCTTGTGTGTCGTATC
* *
76902494 AGGCACCTCGTGTGTCGTTTC
1 AGGCACCTTGTGTGTCGTATC
*
76902515 AGGCA-CTTATGTGTCGTAT
1 AGGCACCTTGTGTGTCGTAT
76902534 ACTGATCAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 11 0.31
21 24 0.69
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.34
Consensus pattern (21 bp):
AGGCACCTTGTGTGTCGTATC
Found at i:76907337 original size:3 final size:3
Alignment explanation
Indices: 76907322--76907508 Score: 131
Period size: 3 Copynumber: 62.3 Consensus size: 3
76907312 AAATTTAATC
76907322 TAT TAT T-T CTAT TAT TAT TA- TAT T-T CTAT GTAT TA- TAT T-T CTAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT -TAT
* * * * *
76907366 T-T GTATT TAT GTAT TAA TAT CAT TAT TTT TTT TAT T-T T-T TA- CAT
1 TAT -TA-T TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
76907410 TAT TAT TAT TAT CAT TAT TAT TAC TAT TAG TAC TAT TAT TAT TTT CTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
*
76907459 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
76907508 T
1 T
76907509 GTGTATTTAT
Statistics
Matches: 148, Mismatches: 20, Indels: 32
0.74 0.10 0.16
Matches are distributed among these distances:
2 13 0.09
3 118 0.80
4 16 0.11
5 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:76911782 original size:27 final size:27
Alignment explanation
Indices: 76911744--76911798 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
76911734 CCTCGATTTG
*
76911744 TAAAATTACCAAAATACCCTTGTAGTA
1 TAAAATGACCAAAATACCCTTGTAGTA
76911771 TAAAATGACCAAAATACCCTTGTAGTA
1 TAAAATGACCAAAATACCCTTGTAGTA
76911798 T
1 T
76911799 TTATTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAAATGACCAAAATACCCTTGTAGTA
Found at i:76912696 original size:32 final size:32
Alignment explanation
Indices: 76912655--76912727 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 32
76912645 TGAAATAGGT
* * *
76912655 TAGGCCCAACTGATATTGGTTTTGATATGGGC
1 TAGGCCCAACTGATATTGATTCTGAGATGGGC
*
76912687 TAGGGCCAACTGATATTGATTCTGAGATGGGC
1 TAGGCCCAACTGATATTGATTCTGAGATGGGC
76912719 TAGGCCCAA
1 TAGGCCCAA
76912728 TTGAGACTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (32 bp):
TAGGCCCAACTGATATTGATTCTGAGATGGGC
Found at i:76914419 original size:24 final size:24
Alignment explanation
Indices: 76914386--76914557 Score: 116
Period size: 24 Copynumber: 6.8 Consensus size: 24
76914376 AAAACGACTC
*
76914386 AAAATGAATAATAATAAAAAGTTT
1 AAAATAAATAATAATAAAAAGTTT
* *
76914410 CAAATAAATAATATATGAAAAA-CTT
1 AAAATAAATAATA-AT-AAAAAGTTT
* * * *
76914435 AAAATTATTCATAATGAAACAGTTT
1 AAAATAAATAATAAT-AAAAAGTTT
* * *
76914460 AATATAAACAATGTATAAAAA-TTT
1 AAAATAAATAAT-AATAAAAAGTTT
*
76914484 AAAATAGATAATACATATAAAATAGTTT
1 AAAATAAATAAT--A-ATAAAA-AGTTT
76914512 AAAATAAATAATAA-ATAAAAGATATT
1 AAAATAAATAATAATA-AAAAG-T-TT
76914538 AAAATAAATAATATATAAAA
1 AAAATAAATAATA-ATAAAA
76914558 TGAAGCTAAA
Statistics
Matches: 113, Mismatches: 22, Indels: 23
0.72 0.14 0.15
Matches are distributed among these distances:
24 33 0.29
25 31 0.27
26 29 0.26
27 5 0.04
28 15 0.13
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAATAAATAATAATAAAAAGTTT
Found at i:76914430 original size:26 final size:25
Alignment explanation
Indices: 76914386--76914557 Score: 138
Period size: 26 Copynumber: 6.8 Consensus size: 25
76914376 AAAACGACTC
*
76914386 AAAATGAATAATA-ATAAAAAGTTT
1 AAAATAAATAATATATAAAAAGTTT
* *
76914410 CAAATAAATAATATATGAAAAA-CTT
1 AAAATAAATAATATAT-AAAAAGTTT
* * * *
76914435 AAAATTATTCATA-ATGAAACAGTTT
1 AAAATAAATAATATAT-AAAAAGTTT
* * *
76914460 AATATAAACAATGTATAAAAA-TTT
1 AAAATAAATAATATATAAAAAGTTT
*
76914484 AAAATAGATAATACATATAAAATAGTTT
1 AAAATAAATAAT--ATATAAAA-AGTTT
*
76914512 AAAATAAATAATAAAT-AAAAGATATT
1 AAAATAAATAATATATAAAAAG-T-TT
76914538 AAAATAAATAATATATAAAA
1 AAAATAAATAATATATAAAA
76914558 TGAAGCTAAA
Statistics
Matches: 114, Mismatches: 23, Indels: 19
0.73 0.15 0.12
Matches are distributed among these distances:
24 32 0.28
25 30 0.26
26 34 0.30
27 4 0.04
28 14 0.12
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.30
Consensus pattern (25 bp):
AAAATAAATAATATATAAAAAGTTT
Found at i:76916229 original size:134 final size:139
Alignment explanation
Indices: 76916072--76916434 Score: 459
Period size: 134 Copynumber: 2.6 Consensus size: 139
76916062 GATCCGTAAC
* * * * * *
76916072 TTGTAGCTTTAATCTGCTCCACTATAACTTCAGCGAAATGAGATTTGCTATCTTCAGTCTGCTCC
1 TTGTAGCTTCAATCTGTTCCACTATAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
*
76916137 ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTGCTCCACTGC-A-A-G-ACA-AGATC
66 ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACAGGAACAGAGATC
76916197 CGCCATAAA
131 CGCCATAAA
* * * *
76916206 TTGTAGCTTCAATCTGTTCCACTACAACTTTAGGGAAATAAGATTCGCTGTTTTCAGTCTGATCC
1 TTGTAGCTTCAATCTGTTCCACTATAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* *
76916271 ACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATGA
66 ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA---CAGGAACA-GA
*
76916336 GATCCGCCATAAT
127 GATCCGCCATAAA
* * *
76916349 TTGTAGCTTCAATTTGTTCTACTGTAACTTCAGGGAAATAAGATTCGCTGTCTTC-GATCTGCTC
1 TTGTAGCTTCAATCTGTTCCACTATAACTTCAGGGAAATAAGATTCGCTGTCTTCAG-TCTGCTC
* * *
76916413 CACAGGAACTTCAAGGAGATAA
65 CACTGCAACTTCAGGGAGATAA
76916435 AATCTACAAC
Statistics
Matches: 194, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
134 102 0.53
135 1 0.01
139 1 0.01
140 1 0.01
141 2 0.01
142 1 0.01
143 86 0.44
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (139 bp):
TTGTAGCTTCAATCTGTTCCACTATAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACAGGAACAGAGATC
CGCCATAAA
Found at i:76916456 original size:143 final size:143
Alignment explanation
Indices: 76916192--76916481 Score: 350
Period size: 143 Copynumber: 2.0 Consensus size: 143
76916182 CTGCAAGACA
*
76916192 AGATCCGCCATAAATTGTAGCTTCAATCTGTTCCACTACAACTTTAGGGAAATAAGATTCGCTGT
1 AGATCCGCCATAAATTGTAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTGT
* * * * * ****
76916257 TTTCAGTCTGATCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
66 CTTCAGTCTGATCCACAGCAACTTCAAGGAGATAAAGCTGACAACTTCAATCTGCTCCACTGCAA
76916322 CTTCAGGAAGATG
131 CTTCAGGAAGATG
* * * **
76916335 AGATCCGCCATAATTTGTAGCTTCAATTTGTTCTACTGTAACTTCAGGGAAATAAGATTCGCTGT
1 AGATCCGCCATAAATTGTAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTGT
* * * * *
76916400 CTTC-GATCTGCTCCACAGGAACTTCAAGGAGATAAAATCT-ACAACTTTAATTTGCTCCACTGC
66 CTTCAG-TCTGATCCACAGCAACTTCAAGGAGAT-AAAGCTGACAACTTCAATCTGCTCCACTGC
* *
76916463 TACTTCAGGGAGATG
129 AACTTCAGGAAGATG
76916478 AGAT
1 AGAT
76916482 TCGCTATCTT
Statistics
Matches: 123, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
142 1 0.01
143 118 0.96
144 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (143 bp):
AGATCCGCCATAAATTGTAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTGT
CTTCAGTCTGATCCACAGCAACTTCAAGGAGATAAAGCTGACAACTTCAATCTGCTCCACTGCAA
CTTCAGGAAGATG
Done.