Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 238 of 356
Found at i:78273714 original size:25 final size:24
Alignment explanation
Indices: 78273670--78273717 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
78273660 TTTTTCTATG
*
78273670 CTTCTTATTTTTAACTAAAAAAAC
1 CTTCTTACTTTTAACTAAAAAAAC
78273694 CTTCTTACTTTTAACTAAAAAAAC
1 CTTCTTACTTTTAACTAAAAAAAC
78273718 TTTGGCCTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (24 bp):
CTTCTTACTTTTAACTAAAAAAAC
Found at i:78274674 original size:21 final size:21
Alignment explanation
Indices: 78274609--78274674 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 21
78274599 TAACCAACCA
*
78274609 AATAAATTCAGTATCTAACAT
1 AATAAATTCAATATCTAACAT
* *
78274630 AATAAATTCAACAAGCTTAAAACAT
1 AATAAATTCAA-TATC-T--AACAT
78274655 AATAAATTCAATATCTAACA
1 AATAAATTCAATATCTAACA
78274675 AATTCAAGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 14 0.39
22 2 0.06
23 2 0.06
24 2 0.06
25 16 0.44
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.29
Consensus pattern (21 bp):
AATAAATTCAATATCTAACAT
Found at i:78274675 original size:32 final size:32
Alignment explanation
Indices: 78274648--78274708 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
78274638 CAACAAGCTT
* *
78274648 AAAACATAATAAATTCAATATCTAACAAATTC
1 AAAACATAATAAATTCAAAATCCAACAAATTC
* *
78274680 AAGACATAATAATTTCAAAATCCAACAAA
1 AAAACATAATAAATTCAAAATCCAACAAA
78274709 CTAAAATTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.57, C:0.16, G:0.02, T:0.25
Consensus pattern (32 bp):
AAAACATAATAAATTCAAAATCCAACAAATTC
Found at i:78274894 original size:12 final size:12
Alignment explanation
Indices: 78274877--78274901 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78274867 TAGCAGATCA
78274877 TTCTCTTTCTTC
1 TTCTCTTTCTTC
78274889 TTCTCTTTCTTC
1 TTCTCTTTCTTC
78274901 T
1 T
78274902 CGCTCCGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
TTCTCTTTCTTC
Found at i:78278188 original size:17 final size:17
Alignment explanation
Indices: 78278168--78278203 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
78278158 TAGTTGATAG
78278168 AATTACAGCAAACAACA
1 AATTACAGCAAACAACA
* *
78278185 AATTGCAGCAAACAGCA
1 AATTACAGCAAACAACA
78278202 AA
1 AA
78278204 CAGAGGAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.56, C:0.22, G:0.11, T:0.11
Consensus pattern (17 bp):
AATTACAGCAAACAACA
Found at i:78283669 original size:22 final size:22
Alignment explanation
Indices: 78283644--78283687 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
78283634 TAATTGTATG
78283644 TATTAATTA-AAATGTATTTAAT
1 TATT-ATTACAAATGTATTTAAT
* *
78283666 TATTTTTACAAATTTATTTAAT
1 TATTATTACAAATGTATTTAAT
78283688 GTTTCACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTATTACAAATGTATTTAAT
Found at i:78284304 original size:28 final size:29
Alignment explanation
Indices: 78284250--78284305 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
78284240 TCTAATGTTT
**
78284250 TTTTAGATATATTTAAGTTAAATTAAATA
1 TTTTAGATATATTTAAAATAAATTAAATA
78284279 TTTTAGAGTAT-TTTAAAATAAA-TAAAT
1 TTTTAGA-TATATTTAAAATAAATTAAAT
78284306 TAAACAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 16 0.67
30 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (29 bp):
TTTTAGATATATTTAAAATAAATTAAATA
Found at i:78285120 original size:3 final size:3
Alignment explanation
Indices: 78285107--78285135 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
78285097 TATTCTTTAC
78285107 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
78285136 AGTGAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:78285654 original size:17 final size:17
Alignment explanation
Indices: 78285632--78285668 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
78285622 CTTGTAACAC
78285632 TTTAAAAGTTTCATTAT
1 TTTAAAAGTTTCATTAT
78285649 TTTAAAAGTTTCATTAT
1 TTTAAAAGTTTCATTAT
78285666 TTT
1 TTT
78285669 GTTTACTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTAAAAGTTTCATTAT
Found at i:78293976 original size:22 final size:22
Alignment explanation
Indices: 78293951--78293996 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
78293941 TTTCAGGGTT
78293951 TAATTTTTATCTCCATTTTTTG
1 TAATTTTTATCTCCATTTTTTG
78293973 TAATTTTTATCTCCATTTTTTG
1 TAATTTTTATCTCCATTTTTTG
78293995 TA
1 TA
78293997 CTCTTCGTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.20, C:0.13, G:0.04, T:0.63
Consensus pattern (22 bp):
TAATTTTTATCTCCATTTTTTG
Found at i:78298167 original size:38 final size:37
Alignment explanation
Indices: 78298114--78298195 Score: 121
Period size: 38 Copynumber: 2.2 Consensus size: 37
78298104 TGAGAGCAGA
78298114 AATGTAATGGCAATAAC-AAGAGTGATTATCCGAAAAG
1 AATGTAATGGCAATAACGAA-AGTGATTATCCGAAAAG
* *
78298151 AATTGTAATGGCAATAACGAAAGTGATTATCGGAAAAT
1 AA-TGTAATGGCAATAACGAAAGTGATTATCCGAAAAG
78298189 AATGTAA
1 AATGTAA
78298196 ATAAAGAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
37 7 0.17
38 32 0.78
39 2 0.05
ACGTcount: A:0.46, C:0.09, G:0.21, T:0.24
Consensus pattern (37 bp):
AATGTAATGGCAATAACGAAAGTGATTATCCGAAAAG
Found at i:78305115 original size:15 final size:15
Alignment explanation
Indices: 78305091--78305124 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
78305081 TTTCTTACGC
78305091 ACAT-AGGGACTCAA
1 ACATAAGGGACTCAA
78305105 ACATAAGGGACTCAA
1 ACATAAGGGACTCAA
78305120 ACATA
1 ACATA
78305125 GAACCTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.47, C:0.21, G:0.18, T:0.15
Consensus pattern (15 bp):
ACATAAGGGACTCAA
Found at i:78308683 original size:50 final size:50
Alignment explanation
Indices: 78308602--78308712 Score: 147
Period size: 50 Copynumber: 2.3 Consensus size: 50
78308592 CGGACTAGGG
* **
78308602 ACACGAGCA-TGTGCCCAGGCCGTGTAACTCACTGGTCACGATTTTGAAAC
1 ACACGAG-AGTGTGCCCAGGCCATGTAACTCACTGGTCACGATTTAAAAAC
* *
78308652 ACACGAGAGTGTGCCCAGGCCATGTACCTCACTGGTCATGATTTAAAAAC
1 ACACGAGAGTGTGCCCAGGCCATGTAACTCACTGGTCACGATTTAAAAAC
78308702 ACAC-AG-GTGTG
1 ACACGAGAGTGTG
78308713 TTCCAGGCTA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
48 5 0.09
49 3 0.05
50 47 0.85
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (50 bp):
ACACGAGAGTGTGCCCAGGCCATGTAACTCACTGGTCACGATTTAAAAAC
Found at i:78319130 original size:40 final size:40
Alignment explanation
Indices: 78319075--78319157 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
78319065 AGAAGTTTGA
78319075 TATTCATCCAATCAATATACCTTGCATGTAAGTGAAATTT
1 TATTCATCCAATCAATATACCTTGCATGTAAGTGAAATTT
78319115 TATTCATCCAATCAATATACCTTGCATGTAAGTGAAATTT
1 TATTCATCCAATCAATATACCTTGCATGTAAGTGAAATTT
78319155 TAT
1 TAT
78319158 CTCGTTTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.39
Consensus pattern (40 bp):
TATTCATCCAATCAATATACCTTGCATGTAAGTGAAATTT
Found at i:78320364 original size:13 final size:14
Alignment explanation
Indices: 78320346--78320374 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78320336 ATATTCAAAA
78320346 CATACC-AAATCAT
1 CATACCAAAATCAT
78320359 CATACCAAAATCAT
1 CATACCAAAATCAT
78320373 CA
1 CA
78320375 AACTCAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (14 bp):
CATACCAAAATCAT
Found at i:78322916 original size:25 final size:25
Alignment explanation
Indices: 78322882--78322933 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
78322872 AGAAAGGTGA
78322882 ATGTATGTAATTCATTTCATGCTAT
1 ATGTATGTAATTCATTTCATGCTAT
78322907 ATGTATGTAATTCATTTCATGCTAT
1 ATGTATGTAATTCATTTCATGCTAT
78322932 AT
1 AT
78322934 ACCATGTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.48
Consensus pattern (25 bp):
ATGTATGTAATTCATTTCATGCTAT
Found at i:78324526 original size:19 final size:18
Alignment explanation
Indices: 78324479--78324527 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
78324469 GTGACCCCTA
*
78324479 TTTTCAAAATTTTTTAATT
1 TTTTTAAAA-TTTTTAATT
*
78324498 TTTTTAAAATTTTTAGTT
1 TTTTTAAAATTTTTAATT
*
78324516 TTGTTTCAAATT
1 TT-TTTAAAATT
78324528 AGTCCTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (18 bp):
TTTTTAAAATTTTTAATT
Found at i:78324826 original size:34 final size:34
Alignment explanation
Indices: 78324781--78324934 Score: 200
Period size: 34 Copynumber: 4.5 Consensus size: 34
78324771 CATGCGAACT
* *
78324781 CCCATGTTATATAGTATGATGTAGTATGCAAACC
1 CCCATGTTATATAGTATGACGTAGTATGTAAACC
* * *
78324815 CTCATGTTATATAGTATGGCGTAGTATGTGAACC
1 CCCATGTTATATAGTATGACGTAGTATGTAAACC
* * *
78324849 CCCATGTTATATAGTATGACATAGTATGTGAATC
1 CCCATGTTATATAGTATGACGTAGTATGTAAACC
* *
78324883 CCCATGTTATATAGTATGAAGTAGTATGTGAACC
1 CCCATGTTATATAGTATGACGTAGTATGTAAACC
* *
78324917 CCCATGCTATATAATATG
1 CCCATGTTATATAGTATG
78324935 TGATTTATGT
Statistics
Matches: 106, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 106 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (34 bp):
CCCATGTTATATAGTATGACGTAGTATGTAAACC
Found at i:78324890 original size:68 final size:68
Alignment explanation
Indices: 78324776--78324934 Score: 221
Period size: 68 Copynumber: 2.3 Consensus size: 68
78324766 TTTAGCATGC
* ** **
78324776 GAACTCCCATGTTATATAGTATGATGTAGTATGCAAACCCTCATGTTATATAGTATGGCGTAGTA
1 GAACCCCCATGTTATATAGTATGACATAGTATGCAAACCCTCATGTTATATAGTATGAAGTAGTA
78324841 TGT
66 TGT
* *
78324844 GAACCCCCATGTTATATAGTATGACATAGTATGTGAATCCC-CATGTTATATAGTATGAAGTAGT
1 GAACCCCCATGTTATATAGTATGACATAGTATG-CAAACCCTCATGTTATATAGTATGAAGTAGT
78324908 ATGT
65 ATGT
* *
78324912 GAACCCCCATGCTATATAATATG
1 GAACCCCCATGTTATATAGTATG
78324935 TGATTTATGT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
68 76 0.94
69 5 0.06
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (68 bp):
GAACCCCCATGTTATATAGTATGACATAGTATGCAAACCCTCATGTTATATAGTATGAAGTAGTA
TGT
Found at i:78326830 original size:15 final size:15
Alignment explanation
Indices: 78326810--78326890 Score: 58
Period size: 15 Copynumber: 5.4 Consensus size: 15
78326800 GATAGACGGT
78326810 TGTGTCGCCCAGCCG
1 TGTGTCGCCCAGCCG
* ** *
78326825 TGTGTCTCATA-CGG
1 TGTGTCGCCCAGCCG
78326839 TCGTGTCGCCCAGCCG
1 T-GTGTCGCCCAGCCG
* * *
78326855 TGTGTCTCACA-CGG
1 TGTGTCGCCCAGCCG
*
78326869 TCGTGTCACCCAGCCG
1 T-GTGTCGCCCAGCCG
78326885 TGTGTC
1 TGTGTC
78326891 TCACACGACC
Statistics
Matches: 48, Mismatches: 14, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
14 6 0.12
15 36 0.75
16 6 0.12
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.26
Consensus pattern (15 bp):
TGTGTCGCCCAGCCG
Found at i:78326845 original size:30 final size:30
Alignment explanation
Indices: 78326805--78326897 Score: 159
Period size: 30 Copynumber: 3.1 Consensus size: 30
78326795 CAAACGATAG
* *
78326805 ACGGTTGTGTCGCCCAGCCGTGTGTCTCAT
1 ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
78326835 ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
1 ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
*
78326865 ACGGTCGTGTCACCCAGCCGTGTGTCTCAC
1 ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
78326895 ACG
1 ACG
78326898 ACCAAGTCAC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.12, C:0.34, G:0.29, T:0.25
Consensus pattern (30 bp):
ACGGTCGTGTCGCCCAGCCGTGTGTCTCAC
Found at i:78328866 original size:18 final size:18
Alignment explanation
Indices: 78328843--78328881 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
78328833 GAGATTCCAA
78328843 AAATATAAAATTTATAAG
1 AAATATAAAATTTATAAG
78328861 AAATATAAAATTTATAAG
1 AAATATAAAATTTATAAG
78328879 AAA
1 AAA
78328882 ATGGACTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (18 bp):
AAATATAAAATTTATAAG
Found at i:78339042 original size:40 final size:40
Alignment explanation
Indices: 78338998--78339247 Score: 358
Period size: 40 Copynumber: 6.3 Consensus size: 40
78338988 GGACTAAGAT
* * * **
78338998 CCGAAGGCCTTTGTGCGAGATACAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
78339038 CCGAAGGCATTCGTGCGGGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
78339078 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
78339118 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
78339158 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
78339198 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
78339237 CCGAAGGCATT
1 CCGAAGGCATT
78339248 TGAACGAGGA
Statistics
Matches: 193, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 34 0.18
40 159 0.82
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:78339159 original size:120 final size:119
Alignment explanation
Indices: 78338945--78339247 Score: 356
Period size: 120 Copynumber: 2.5 Consensus size: 119
78338935 TTGAATGCTG
* * * * * * * * * *
78338945 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCTGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
* *
78339009 TGTGCGAGATACAAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAAA
64 CGTGCGAGATACAAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
** * *
78339065 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* ** * *
78339130 GTGCGAGTTATTAAATCCGGGTTACGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACAAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
78339185 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
78339248 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 34 0.22
120 118 0.76
121 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:78340736 original size:29 final size:29
Alignment explanation
Indices: 78340673--78340740 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
78340663 TAATCAACCG
78340673 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
78340702 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
78340731 CGCACACTTA
1 CGCACACTTA
78340741 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:78340883 original size:29 final size:29
Alignment explanation
Indices: 78340849--78340920 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
78340839 ATCAACCGCG
* * *
78340849 CACACTTAGTGCCATGCACTTTAAACTCA
1 CACACTTAGTGCCATACAATTTAAACCCA
** *
78340878 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATACAATTTAAACCCA
78340907 CACACTTAGTGCCA
1 CACACTTAGTGCCA
78340921 ATCTCATGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATACAATTTAAACCCA
Found at i:78352903 original size:32 final size:32
Alignment explanation
Indices: 78352843--78352904 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
78352833 TAAATTTTGG
* *
78352843 TGTGTGGCCTACACGACCCAAATTGCCTAGCC
1 TGTGTGGCCCACACGACCCAAATGGCCTAGCC
*
78352875 TGTGTGGCCCACATG-CCCAAAATGGCCTAG
1 TGTGTGGCCCACACGACCC-AAATGGCCTAG
78352905 ACCGTATGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 3 0.12
32 23 0.88
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (32 bp):
TGTGTGGCCCACACGACCCAAATGGCCTAGCC
Found at i:78362151 original size:22 final size:22
Alignment explanation
Indices: 78362103--78362145 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
78362093 CCTTTTTAAG
78362103 AAAATATAATAAAACACTTGGA
1 AAAATATAATAAAACACTTGGA
*
78362125 AAAATAATAATAAAGCACTTG
1 AAAAT-ATAATAAAACACTTG
78362146 ATAAATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.23
Consensus pattern (22 bp):
AAAATATAATAAAACACTTGGA
Found at i:78372381 original size:26 final size:26
Alignment explanation
Indices: 78372352--78372458 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
78372342 TGGTACAAAT
78372352 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
78372378 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78372404 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78372429 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78372455 TGAT
1 TGAT
78372459 GCGCATTTCA
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 23 0.31
26 51 0.69
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78372424 original size:51 final size:52
Alignment explanation
Indices: 78372352--78372458 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
78372342 TGGTACAAAT
78372352 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
* * *
78372404 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
78372455 TGAT
1 TGAT
78372459 GCGCATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 45 0.87
52 7 0.13
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
Found at i:78374117 original size:27 final size:27
Alignment explanation
Indices: 78374077--78374217 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
78374067 AGGAAGCGTC
*
78374077 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
78374104 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
78374130 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
78374158 CTGGTGCCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
78374185 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
78374212 CTGGTG
1 CTGGTG
78374218 ACTTCATCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 10 0.10
27 85 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:78374156 original size:54 final size:54
Alignment explanation
Indices: 78374074--78374217 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
78374064 TAGAGGAAGC
*
78374074 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
78374128 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
* * *
78374182 GTTCTGGTGGCTCTGCCACAA-TATTTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
78374218 ACTTCATCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
Found at i:78374229 original size:81 final size:79
Alignment explanation
Indices: 78374077--78374235 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 79
78374067 AGGAAGCGTC
* *
78374077 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGCCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
78374142 GCCACAATTATCTGAT
66 -CCACAA-TATCTGAT
* * * *
78374158 CTGGTGCCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATTTGTATCTGGTGACT
1 CTGGTGCCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
78374221 -TCATCACAATATCTG
64 ATC--CACAATATCTG
78374236 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
79 1 0.01
80 16 0.24
81 51 0.75
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (79 bp):
CTGGTGCCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
CCACAATATCTGAT
Found at i:78380480 original size:26 final size:26
Alignment explanation
Indices: 78380451--78380558 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
78380441 TGGTACAAAT
*
78380451 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
78380477 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78380503 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
78380529 TGATAATGGTTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
78380555 TGAT
1 TGAT
78380559 GAGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78382219 original size:27 final size:27
Alignment explanation
Indices: 78382179--78382318 Score: 146
Period size: 27 Copynumber: 5.2 Consensus size: 27
78382169 AGGAAGCGTC
78382179 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
78382206 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
78382232 CCTGGTGGCTATGCCATAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* * *
78382260 CTGGTGCCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
78382287 CTAGTGGCT-TACCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
78382313 CTGGTG
1 CTGGTG
78382319 ACTTCGTCAC
Statistics
Matches: 94, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
25 6 0.06
26 16 0.17
27 69 0.73
28 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:78382258 original size:54 final size:54
Alignment explanation
Indices: 78382176--78382318 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
78382166 TGGAGGAAGC
*
78382176 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
*
78382230 GTCCTGGTGGCTATGCCATAATTATCTGATCTGGTGCCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
* * *
78382284 GTTCTAGTGGCT-TACCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
78382319 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
52 6 0.07
53 14 0.17
54 62 0.76
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
Found at i:78385557 original size:21 final size:20
Alignment explanation
Indices: 78385533--78385573 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
78385523 ACTTGTATAA
78385533 CTATCATCAAACATTCAAAAT
1 CTATCATCAAACA-TCAAAAT
78385554 CTATCATCAAACATCAAAAT
1 CTATCATCAAACATCAAAAT
78385574 ACATGCTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (20 bp):
CTATCATCAAACATCAAAAT
Found at i:78387036 original size:16 final size:17
Alignment explanation
Indices: 78387015--78387047 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
78387005 TGGTACTTCT
*
78387015 TATAAT-TTTTTTAAAA
1 TATAATCTTTTATAAAA
78387031 TATAATCTTTTATAAAA
1 TATAATCTTTTATAAAA
78387048 AAAATTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (17 bp):
TATAATCTTTTATAAAA
Found at i:78387080 original size:20 final size:20
Alignment explanation
Indices: 78387056--78387110 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
78387046 AAAAAATTCA
78387056 ATTTTTATATTTTCTTAA-T
1 ATTTTTATATTTTCTTAATT
* *
78387075 AGTTTTATAATTT-TTAATT
1 ATTTTTATATTTTCTTAATT
78387094 ATATTTTA-ATTTTCTTA
1 AT-TTTTATATTTTCTTA
78387111 CAATTTATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 4 0.14
19 17 0.59
20 8 0.28
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (20 bp):
ATTTTTATATTTTCTTAATT
Found at i:78395295 original size:28 final size:28
Alignment explanation
Indices: 78395205--78395382 Score: 261
Period size: 28 Copynumber: 6.4 Consensus size: 28
78395195 ATATTAAGTC
**
78395205 CGCACACTCGGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
78395232 CGCACACTTCGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
78395259 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
78395287 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
78395315 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78395343 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
78395372 CGCACACTTAG
1 CGCACACTTAG
78395383 CGCCAATCTC
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 47 0.34
28 77 0.55
29 16 0.11
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78398319 original size:6 final size:6
Alignment explanation
Indices: 78398308--78398341 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
78398298 GTGTTAAATC
*
78398308 TTTATT TTTATT ATTATCT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTAT-T TTTATT TTTATT TTT
78398342 TCTTTTCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:78398332 original size:19 final size:18
Alignment explanation
Indices: 78398308--78398347 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
78398298 GTGTTAAATC
78398308 TTTATTTTTATTATTATCT
1 TTTATTTTTATT-TTATCT
*
78398327 TTTATTTTTATTTTTTCT
1 TTTATTTTTATTTTATCT
78398345 TTT
1 TTT
78398348 CTCTCTTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTATTTTTATTTTATCT
Found at i:78399326 original size:47 final size:47
Alignment explanation
Indices: 78399273--78399402 Score: 242
Period size: 47 Copynumber: 2.8 Consensus size: 47
78399263 TGACTCCTAA
*
78399273 TCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACAT
1 TCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACAT
*
78399320 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 TCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACAT
78399367 TCATCACATCGGCTATTAGGCCTTATCACATATATA
1 TCATCACATCGGCTATTAGGCCTTATCACATATATA
78399403 TACACTGTCT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 80 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.32
Consensus pattern (47 bp):
TCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACAT
Found at i:78402356 original size:5 final size:5
Alignment explanation
Indices: 78402346--78402371 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
78402336 TGTGAATGTG
78402346 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
78402372 CACAGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:78402740 original size:29 final size:29
Alignment explanation
Indices: 78402707--78402762 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
78402697 ACCTTGACAC
* * *
78402707 GAACTCTTAATGAACAAGTTCTTCATCGT
1 GAACTCTCAACGAACAAGTTCTCCATCGT
78402736 GAACTCTCAACGAACAAGTTCTCCATC
1 GAACTCTCAACGAACAAGTTCTCCATC
78402763 TCTTCCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (29 bp):
GAACTCTCAACGAACAAGTTCTCCATCGT
Found at i:78409340 original size:17 final size:18
Alignment explanation
Indices: 78409311--78409347 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
78409301 AATTGGACTT
78409311 TTTTTAATAATTTTTTAA
1 TTTTTAATAATTTTTTAA
78409329 TTTTTAAT-ATTTTTTAA
1 TTTTTAATAATTTTTTAA
78409346 TT
1 TT
78409348 GAATCTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTAATAATTTTTTAA
Found at i:78414973 original size:32 final size:32
Alignment explanation
Indices: 78414934--78415000 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
78414924 TTTCATTCTT
*
78414934 CTTTCATTATATGTTATTATTGTTTTGATTAA
1 CTTTCATTATATGTTATTATTGTTCTGATTAA
78414966 CTTTCATTATATGTTATTATTGTTCTGATTAA
1 CTTTCATTATATGTTATTATTGTTCTGATTAA
78414998 CTT
1 CTT
78415001 ATTTTACTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.58
Consensus pattern (32 bp):
CTTTCATTATATGTTATTATTGTTCTGATTAA
Found at i:78417976 original size:18 final size:19
Alignment explanation
Indices: 78417950--78418001 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
78417940 AGTAAAGTTT
*
78417950 ATATTAAAATCCTTGAAGG
1 ATATTAAAATCCTTGAAGC
* *
78417969 AT-TTAAAATGCTAGAAGC
1 ATATTAAAATCCTTGAAGC
*
78417987 ATATTAAAATTCTTG
1 ATATTAAAATCCTTG
78418002 GGAAATTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (19 bp):
ATATTAAAATCCTTGAAGC
Found at i:78418785 original size:10 final size:12
Alignment explanation
Indices: 78418755--78418780 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78418745 ACTTTTTATA
78418755 AATAAAATAGTT
1 AATAAAATAGTT
78418767 AATAAAATAGTT
1 AATAAAATAGTT
78418779 AA
1 AA
78418781 AAATATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATAAAATAGTT
Found at i:78424233 original size:16 final size:16
Alignment explanation
Indices: 78424189--78424235 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
78424179 TGATATAAAA
* *
78424189 TATAATTTATAATAAT
1 TATAATTAAAAATAAT
78424205 TATACATTTAAAAATAAT
1 TATA-A-TTAAAAATAAT
78424223 TATAATTAAAAAT
1 TATAATTAAAAAT
78424236 TAAAATTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 2 0.07
18 13 0.48
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAATTAAAAATAAT
Found at i:78429710 original size:16 final size:16
Alignment explanation
Indices: 78429674--78429704 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78429664 TACTATAACA
78429674 AAATAGAATTATAATT
1 AAATAGAATTATAATT
*
78429690 AAATAGAGTTATAAT
1 AAATAGAATTATAAT
78429705 AGAATAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (16 bp):
AAATAGAATTATAATT
Found at i:78429900 original size:25 final size:26
Alignment explanation
Indices: 78429872--78429923 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
78429862 GATAATTATT
*
78429872 ATTATTATT-ATTAAATTTTAATAAA
1 ATTATTATTAAATAAATTTTAATAAA
*
78429897 ATTATTATTAAATATATTTTAATAAA
1 ATTATTATTAAATAAATTTTAATAAA
78429923 A
1 A
78429924 ATAAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTATTATTAAATAAATTTTAATAAA
Found at i:78429934 original size:26 final size:25
Alignment explanation
Indices: 78429885--78429940 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
78429875 ATTATTATTA
* ** *
78429885 AATTTTAATAAAATTATTATTAAAT
1 AATTTTAATAAAAATAAAAATAAAT
78429910 ATATTTTAATAAAAATAAAAATAAAT
1 A-ATTTTAATAAAAATAAAAATAAAT
78429936 AATTT
1 AATTT
78429941 AATCATATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
AATTTTAATAAAAATAAAAATAAAT
Found at i:78429962 original size:61 final size:57
Alignment explanation
Indices: 78429886--78430025 Score: 156
Period size: 61 Copynumber: 2.4 Consensus size: 57
78429876 TTATTATTAA
* * * *
78429886 ATTTTAATAAAATTATTATTAAATA-TATTTTAATAAAAATAAAAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAATACAATTTT-AT-AAAAT---AATAAATAATTTAATAAC
* *
78429947 ATTTTAACATAATTATTATTAAATACAATTTTATAAAATAATACATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATACAATTTTATAAAATAATAAATAATTTAATAAC
*
78430004 ATTCTCAATATAATTATTATTA
1 ATT-TTAATATAATTATTATTA
78430026 TATTAATTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
57 18 0.26
58 16 0.23
60 5 0.07
61 25 0.36
62 5 0.07
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTAAATACAATTTTATAAAATAATAAATAATTTAATAAC
Found at i:78430062 original size:23 final size:21
Alignment explanation
Indices: 78430031--78430073 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
78430021 TATTATATTA
78430031 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
78430054 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
78430074 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:78433469 original size:27 final size:27
Alignment explanation
Indices: 78433439--78433497 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
78433429 AAAGAAAATT
*
78433439 TTAGATACAGCTTGTGATTAAAAAAAA
1 TTAGATACAACTTGTGATTAAAAAAAA
*
78433466 TTAGATACAACTTGTGATTAAAAAAAT
1 TTAGATACAACTTGTGATTAAAAAAAA
78433493 TTAGA
1 TTAGA
78433498 CACTGAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (27 bp):
TTAGATACAACTTGTGATTAAAAAAAA
Found at i:78443024 original size:40 final size:40
Alignment explanation
Indices: 78442924--78443187 Score: 284
Period size: 40 Copynumber: 6.6 Consensus size: 40
78442914 GCTCCTCGTT
* * * *
78442924 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
78442964 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78443003 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78443043 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
78443083 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
78443123 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
78443164 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
78443188 GCAGCATTCA
Statistics
Matches: 196, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 142 0.72
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78450590 original size:40 final size:40
Alignment explanation
Indices: 78450490--78450754 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
78450480 GCTCCTCGTT
* * * *
78450490 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
78450530 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78450569 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78450609 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
78450649 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
78450689 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
78450730 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
78450755 CAACATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78450714 original size:80 final size:80
Alignment explanation
Indices: 78450457--78450754 Score: 254
Period size: 80 Copynumber: 3.7 Consensus size: 80
78450447 AAATCACGTA
* * ** * * *
78450457 CCTTTGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
78450519 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
78450535 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
78450598 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
78450615 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
78450679 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
78450695 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
78450755 CAACATTCAA
Statistics
Matches: 181, Mismatches: 27, Indels: 22
0.79 0.12 0.10
Matches are distributed among these distances:
77 1 0.01
78 11 0.06
79 50 0.28
80 106 0.59
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:78450763 original size:41 final size:41
Alignment explanation
Indices: 78450686--78450763 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
78450676 TTTGTATCTC
* * *
78450686 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGAAACATTCACTTA
78450727 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAACATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGA-AACATTCA
78450764 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 16 0.50
41 16 0.50
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGAAACATTCACTTA
Found at i:78456077 original size:15 final size:15
Alignment explanation
Indices: 78456059--78456087 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
78456049 TTTATTTTTC
78456059 TTATATTTTTATGGT
1 TTATATTTTTATGGT
78456074 TTATATTTTTATGG
1 TTATATTTTTATGG
78456088 AATGATTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.66
Consensus pattern (15 bp):
TTATATTTTTATGGT
Found at i:78459221 original size:93 final size:93
Alignment explanation
Indices: 78459062--78459232 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
78459052 GGATGGTTGA
* * *
78459062 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
78459127 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
78459155 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
78459220 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78459233 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78459235 original size:46 final size:46
Alignment explanation
Indices: 78459068--78459237 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
78459058 TTGAGCATCT
* * *
78459068 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
* * *
78459114 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CC
78459161 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
*
78459207 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78459238 GGGGCAGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 58 0.55
47 28 0.27
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
Found at i:78462030 original size:19 final size:19
Alignment explanation
Indices: 78462003--78462060 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
78461993 ATCAACAAAT
*
78462003 AATTTAAAAATTATAAAAA
1 AATTCAAAAATTATAAAAA
78462022 AATTC-AAAATTAT-AAAA
1 AATTCAAAAATTATAAAAA
78462039 AATTCATAAAATT-TCAAAAA
1 AATTCA-AAAATTAT-AAAAA
78462059 AA
1 AA
78462061 AGAGAAAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
17 9 0.26
18 9 0.26
19 10 0.29
20 6 0.18
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
AATTCAAAAATTATAAAAA
Found at i:78462040 original size:17 final size:18
Alignment explanation
Indices: 78462009--78462044 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
78461999 AAATAATTTA
78462009 AAAATTATAAAAAAATTC
1 AAAATTATAAAAAAATTC
78462027 AAAATTAT-AAAAAATTC
1 AAAATTATAAAAAAATTC
78462044 A
1 A
78462045 TAAAATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAATTATAAAAAAATTC
Found at i:78475124 original size:48 final size:48
Alignment explanation
Indices: 78475053--78475344 Score: 403
Period size: 48 Copynumber: 6.1 Consensus size: 48
78475043 TAAAGTACCA
* *
78475053 ATGCCATGTCCTC-GACATGGTCTTACA-T-GAATCCACATATCATCACTG
1 ATGCCATGTCC-CAGACATGGTCTTACACTGGCA--CACATATCATCACCG
**
78475101 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
78475149 ATGCCATGT-CCAGACATGTTCTTACACTGGCACACATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* **
78475196 ATGCCATGTCCCAGACATGGTCTTACACTGACACACATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* * *
78475244 ATGCCATGTCCCAGACATGTTCTTACATTGGCACACATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
78475292 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
78475340 ATGCC
1 ATGCC
78475345 TAAACCCTAA
Statistics
Matches: 216, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
47 44 0.20
48 169 0.78
49 1 0.00
50 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
Found at i:78475231 original size:95 final size:96
Alignment explanation
Indices: 78475053--78475344 Score: 457
Period size: 96 Copynumber: 3.1 Consensus size: 96
78475043 TAAAGTACCA
* * **
78475053 ATGCCATGTCCTC-GACATGGTCTTACA-T-GAATCCACATATCATCACTGATGCCATGTCCCAG
1 ATGCCATGTCC-CAGACATGTTCTTACACTGGCA--CACATATCATCACCAATGCCATGTCCCAG
78475115 ACATGGTCTTACACTGGCACACATATCATTGCCG
63 ACATGGTCTTACACTGGCACACATATCATTGCCG
78475149 ATGCCATGT-CCAGACATGTTCTTACACTGGCACACATATCATCACCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGTTCTTACACTGGCACACATATCATCACCAATGCCATGTCCCAGACA
*
78475213 TGGTCTTACACTGACACACATATCATTGCCG
66 TGGTCTTACACTGGCACACATATCATTGCCG
*
78475244 ATGCCATGTCCCAGACATGTTCTTACATTGGCACACATATCATCACCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGTTCTTACACTGGCACACATATCATCACCAATGCCATGTCCCAGACA
* *
78475309 TGGTCTTACACTGGCACACATATCATCGCTG
66 TGGTCTTACACTGGCACACATATCATTGCCG
78475340 ATGCC
1 ATGCC
78475345 TAAACCCTAA
Statistics
Matches: 183, Mismatches: 9, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
94 1 0.01
95 83 0.45
96 97 0.53
97 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGTTCTTACACTGGCACACATATCATCACCAATGCCATGTCCCAGACA
TGGTCTTACACTGGCACACATATCATTGCCG
Found at i:78479943 original size:59 final size:59
Alignment explanation
Indices: 78479873--78479991 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
78479863 TCTCTCTGAG
78479873 TCAGATTTAGGAACTCTCTTCTATGGGTATCCTCATAACTAGTCCCCACATACTTCCCC
1 TCAGATTTAGGAACTCTCTTCTATGGGTATCCTCATAACTAGTCCCCACATACTTCCCC
78479932 TCAGATTTAGGAACTCTCTTCTATGGGTATCCTCATAACTAGTCCCCACATACTTCCCC
1 TCAGATTTAGGAACTCTCTTCTATGGGTATCCTCATAACTAGTCCCCACATACTTCCCC
78479991 T
1 T
78479992 AGAAAGCAGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.33
Consensus pattern (59 bp):
TCAGATTTAGGAACTCTCTTCTATGGGTATCCTCATAACTAGTCCCCACATACTTCCCC
Found at i:78482403 original size:32 final size:31
Alignment explanation
Indices: 78482367--78482435 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 31
78482357 ACCATATATA
78482367 CAAAATGATTATAATGCTATACATGCCATAC
1 CAAAATGATTATAATGCTATACATGCCATAC
78482398 TCAAAATGATTATAATGCTATACATGCCATAC
1 -CAAAATGATTATAATGCTATACATGCCATAC
78482430 CAAAAT
1 CAAAAT
78482436 ACACAAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 6 0.16
32 31 0.84
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (31 bp):
CAAAATGATTATAATGCTATACATGCCATAC
Found at i:78484212 original size:15 final size:15
Alignment explanation
Indices: 78484124--78484212 Score: 76
Period size: 15 Copynumber: 6.0 Consensus size: 15
78484114 CAAAGATAAC
*
78484124 AAGAAACCCGA-ATA
1 AAGAAACCCAAGATA
*
78484138 AAGAAATCCAAGATA
1 AAGAAACCCAAGATA
*
78484153 GAGAAACCCGAA-ATA
1 AAGAAACCC-AAGATA
*
78484168 AAGAAATCC-AGAATA
1 AAGAAACCCAAG-ATA
* * *
78484183 AAGAGATCCAGGATA
1 AAGAAACCCAAGATA
78484198 AAGAAACCCAAGATA
1 AAGAAACCCAAGATA
78484213 CGATACTATG
Statistics
Matches: 59, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
13 1 0.02
14 9 0.15
15 46 0.78
16 3 0.05
ACGTcount: A:0.56, C:0.17, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAAGATA
Found at i:78487191 original size:93 final size:93
Alignment explanation
Indices: 78487080--78487254 Score: 262
Period size: 93 Copynumber: 1.9 Consensus size: 93
78487070 CGCCCATAAG
* * *
78487080 CGAACTCGGACTCAACTCAATGAGCTAGGGCGT-TCGCATCCATAAATGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTAGGACATAT-GCATCCATAAATGAACTCGGACTCAACTC
78487144 AACGAGCTCGAATGCCCAGTTACATCTCA
65 AACGAGCTCGAATGCCCAGTTACATCTCA
* * *
78487173 CGAACTCGGACTCAACTCAACGAGTTCGGACATATGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTAGGACATATGCATCCATAAATGAACTCGGACTCAACTCA
* *
78487238 ACGAGTTCGGATGCCCA
66 ACGAGCTCGAATGCCCA
78487255 AATATCCCAG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTAGGACATATGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGAATGCCCAGTTACATCTCA
Found at i:78487241 original size:46 final size:45
Alignment explanation
Indices: 78487073--78487248 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
78487063 TGTAACCCGC
* * * *
78487073 CCATAAGCGAACTCGGACTCAACTCAATGAGCTAGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATT-GCAT
** * *
78487119 CCATAAATGAACTCGGACTCAACTCAACGAGCTCGAATGCCCAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCG---G-ACA-TTGCAT
* *
78487169 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATATGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACAT-TGCAT
* *
78487212 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
78487249 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 1 0.01
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 26 0.24
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTGCAT
Found at i:78487267 original size:46 final size:46
Alignment explanation
Indices: 78487126--78487267 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 46
78487116 CATCCATAAA
* * * *
78487126 TGAACTCGGACTCAACTCAACGAGCTCGAATGCCCAGTTACATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCCAG
* *
78487173 CGAACTCGGACTCAACTCAACGAGTTCGGA----CATATGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--CAG
*
78487219 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCCAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCCAG
78487265 TGA
1 TGA
78487268 CATATCACTT
Statistics
Matches: 77, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
41 2 0.03
43 5 0.06
45 1 0.01
46 34 0.44
47 27 0.35
48 4 0.05
50 4 0.05
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCCAG
Found at i:78489013 original size:17 final size:18
Alignment explanation
Indices: 78488981--78489014 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
78488971 TGTTGTCTGT
*
78488981 CCGTGTGGGTCCACATGC
1 CCGTGTGGGCCCACATGC
78488999 CCGTGT-GGCCCACATG
1 CCGTGTGGGCCCACATG
78489015 ACCCAATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.35, G:0.32, T:0.21
Consensus pattern (18 bp):
CCGTGTGGGCCCACATGC
Found at i:78496352 original size:17 final size:16
Alignment explanation
Indices: 78496319--78496353 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
78496309 TTTAAAAAGG
*
78496319 TTTTTTATATAGTGAT
1 TTTTTTATATAGCGAT
78496335 TTTTTTATATAAGCGAT
1 TTTTTTATAT-AGCGAT
78496352 TT
1 TT
78496354 ATTAAGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.60
Consensus pattern (16 bp):
TTTTTTATATAGCGAT
Found at i:78496436 original size:15 final size:15
Alignment explanation
Indices: 78496412--78496442 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
78496402 AGGTATTGGG
*
78496412 ACCTCGTTTCTATAA
1 ACCTCATTTCTATAA
78496427 ACCTCATTTCTATAA
1 ACCTCATTTCTATAA
78496442 A
1 A
78496443 TTGAGCCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (15 bp):
ACCTCATTTCTATAA
Found at i:78504658 original size:17 final size:17
Alignment explanation
Indices: 78504636--78504672 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
78504626 TCGAGGGTCC
*
78504636 AATCAAGGGACGTTTTA
1 AATCAACGGACGTTTTA
*
78504653 AATCAACGGATGTTTTA
1 AATCAACGGACGTTTTA
78504670 AAT
1 AAT
78504673 TATCTCAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (17 bp):
AATCAACGGACGTTTTA
Found at i:78509631 original size:8 final size:8
Alignment explanation
Indices: 78509620--78509644 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
78509610 AATAAAAAAA
78509620 ATTAATAT
1 ATTAATAT
78509628 ATTAATAT
1 ATTAATAT
78509636 ATTAATAT
1 ATTAATAT
78509644 A
1 A
78509645 AAAATTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTAATAT
Found at i:78509871 original size:17 final size:17
Alignment explanation
Indices: 78509851--78509894 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
78509841 TTTTAAAGTT
*
78509851 TTTATTTTTTTTATAAA
1 TTTATTTTTTTTAAAAA
*
78509868 TTTATATTTTTTAAAAA
1 TTTATTTTTTTTAAAAA
78509885 TTATATTTTT
1 TT-TATTTTT
78509895 ATGCTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTATTTTTTTTAAAAA
Found at i:78509877 original size:16 final size:17
Alignment explanation
Indices: 78509858--78509896 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
78509848 GTTTTTATTT
*
78509858 TTTTTAT-AAATTTATA
1 TTTTTATAAAAATTATA
78509874 TTTTT-TAAAAATTATA
1 TTTTTATAAAAATTATA
78509890 TTTTTAT
1 TTTTTAT
78509897 GCTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 18 0.90
17 1 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTTATAAAAATTATA
Found at i:78513636 original size:31 final size:31
Alignment explanation
Indices: 78513598--78513691 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
78513588 GTCAATCAAT
** *
78513598 TGATATATTCTTATGTATATTTTGTATGTTA
1 TGATATATTAGTATGTATATTATGTATGTTA
* *
78513629 TGATATATTAGTATGTTTATTATGTTTGTTA
1 TGATATATTAGTATGTATATTATGTATGTTA
* *
78513660 TGATATATTAGTGTGTATGTTATGATATGTTA
1 TGATATATTAGTATGTATATTATG-TATGTTA
78513692 GTATGTATAG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 47 0.89
32 6 0.11
ACGTcount: A:0.27, C:0.01, G:0.17, T:0.55
Consensus pattern (31 bp):
TGATATATTAGTATGTATATTATGTATGTTA
Found at i:78513681 original size:22 final size:22
Alignment explanation
Indices: 78513649--78513707 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
78513639 GTATGTTTAT
*
78513649 TATGTTTGTTATGATATATTAG
1 TATGTATGTTATGATATATTAG
* *
78513671 TGTGTATGTTATGATATGTTAG
1 TATGTATGTTATGATATATTAG
78513693 TATGTATAG-TATGAT
1 TATGTAT-GTTATGAT
78513708 TTTTTTTTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (22 bp):
TATGTATGTTATGATATATTAG
Found at i:78524078 original size:40 final size:40
Alignment explanation
Indices: 78523770--78524077 Score: 526
Period size: 40 Copynumber: 7.7 Consensus size: 40
78523760 GCAAACACAT
* * *
78523770 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
78523810 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
78523850 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
78523890 TTGCTTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
78523930 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
78523970 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
78524010 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
78524050 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
78524078 TCCAATGCTC
Statistics
Matches: 254, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 254 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:78538260 original size:19 final size:19
Alignment explanation
Indices: 78538232--78538269 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
78538222 AAGAAAGGGA
78538232 AAAAAATTTATTTTACTAT
1 AAAAAATTTATTTTACTAT
*
78538251 AAAAATTTTATTTTACTAT
1 AAAAAATTTATTTTACTAT
78538270 TTACAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
AAAAAATTTATTTTACTAT
Found at i:78542889 original size:25 final size:26
Alignment explanation
Indices: 78542850--78542900 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
78542840 GAATTTTTTA
*
78542850 AAATTATTATAATTTTTTAAAAATAT
1 AAATTATTAGAATTTTTTAAAAATAT
*
78542876 AAATT-TTAGAATTTTTTATAAATAT
1 AAATTATTAGAATTTTTTAAAAATAT
78542901 TTTGAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (26 bp):
AAATTATTAGAATTTTTTAAAAATAT
Found at i:78543185 original size:85 final size:85
Alignment explanation
Indices: 78543042--78543216 Score: 341
Period size: 85 Copynumber: 2.1 Consensus size: 85
78543032 TCAAATTGTA
78543042 AAATTCAACTTGATTCGAACTAGAAACTCGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
1 AAATTCAACTTGATTCGAACTAGAAACTCGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
78543107 AACTTGATTTGATTAACTCG
66 AACTTGATTTGATTAACTCG
*
78543127 AAATTCAACTTGATTCGAACTAGAAACTTGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
1 AAATTCAACTTGATTCGAACTAGAAACTCGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
78543192 AACTTGATTTGATTAACTCG
66 AACTTGATTTGATTAACTCG
78543212 AAATT
1 AAATT
78543217 TAATTTTTTT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (85 bp):
AAATTCAACTTGATTCGAACTAGAAACTCGAATTACTTATTCGAGTTGACTCAAATAACTTGAAT
AACTTGATTTGATTAACTCG
Found at i:78543958 original size:12 final size:12
Alignment explanation
Indices: 78543937--78543971 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
78543927 AGACTGACCC
*
78543937 TATTAATTTTTA
1 TATTATTTTTTA
78543949 TATTATTTTTTA
1 TATTATTTTTTA
*
78543961 TATAATTTTTT
1 TATTATTTTTT
78543972 TAAAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TATTATTTTTTA
Found at i:78548467 original size:5 final size:5
Alignment explanation
Indices: 78548451--78548495 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
78548441 ACCTAATCTA
* *
78548451 AAAATG AAAAG ATAAG AAAAG ACAAG AGAAAG AAAAG AAAAG AAA
1 AAAA-G AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAA
78548496 CCTAATTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
5 26 0.76
6 8 0.24
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.04
Consensus pattern (5 bp):
AAAAG
Found at i:78549229 original size:5 final size:5
Alignment explanation
Indices: 78549208--78549271 Score: 94
Period size: 5 Copynumber: 12.6 Consensus size: 5
78549198 TTAAGATTTT
*
78549208 TATTA TAATA TATTA T-TATA TTATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TAT-TA -TATTA TATTA TATTA TATTA TATTA TATTA
78549259 TATTA TATTA TAT
1 TATTA TATTA TAT
78549272 ATAAAACAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
4 1 0.02
5 49 0.91
6 3 0.06
7 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:78556109 original size:13 final size:13
Alignment explanation
Indices: 78556076--78556130 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
78556066 TAGCCTATTC
78556076 TAAATTAAT-AAAA
1 TAAA-TAATAAAAA
78556089 TAAA-AATAAAAA
1 TAAATAATAAAAA
*
78556101 TAAATAATAAAAC
1 TAAATAATAAAAA
*
78556114 TAAATAAAACAAAA
1 TAAATAATA-AAAA
78556128 TAA
1 TAA
78556131 TATCTTCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 3 0.08
12 8 0.22
13 19 0.53
14 6 0.17
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.22
Consensus pattern (13 bp):
TAAATAATAAAAA
Found at i:78566758 original size:13 final size:13
Alignment explanation
Indices: 78566719--78566758 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
78566709 TAATTAATAA
*
78566719 AATAAAAATAAAT
1 AATAAAACTAAAT
78566732 AATAAAACT--A-
1 AATAAAACTAAAT
78566742 AATAAAACTAAAT
1 AATAAAACTAAAT
78566755 AATA
1 AATA
78566759 TCTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 9 0.39
11 1 0.04
12 1 0.04
13 12 0.52
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (13 bp):
AATAAAACTAAAT
Found at i:78568117 original size:106 final size:105
Alignment explanation
Indices: 78567922--78568119 Score: 247
Period size: 106 Copynumber: 1.9 Consensus size: 105
78567912 CCTCGTTCAC
* * * * *
78567922 TTCTCCCATGTCCGTGTATGTATGTCCACCCCGTGTTGTTTTGTAAGTCTTGACCATGAGGAGTG
1 TTCTCCCACGTCCGTGTATGGATGTCCACCCCATGTTATTTTGTAAGTCTTGACCACGAGGAGTG
*
78567987 AACACAGGTGTGTCGCACGACCGTGTTCTGCTTCATTCCT
66 AACACAGGCGTGTCGCACGACCGTGTTCTGCTTCATTCCT
*
78568027 TTCTCCCACG-CCAGTGTATGGATGTCCACGCCCATGTTATTTTGTCAGTCTTGACCACG-GGTA
1 TTCTCCCACGTCC-GTGTATGGATGTCCAC-CCCATGTTATTTTGTAAGTCTTGACCACGAGG-A
* ** * *
78568090 GTGAGCATGGGCGTGTCTCACGTCCGTGTT
63 GTGAACACAGGCGTGTCGCACGACCGTGTT
78568120 GTTTTCTTAG
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
104 2 0.03
105 26 0.33
106 50 0.64
ACGTcount: A:0.16, C:0.26, G:0.25, T:0.33
Consensus pattern (105 bp):
TTCTCCCACGTCCGTGTATGGATGTCCACCCCATGTTATTTTGTAAGTCTTGACCACGAGGAGTG
AACACAGGCGTGTCGCACGACCGTGTTCTGCTTCATTCCT
Found at i:78570341 original size:549 final size:546
Alignment explanation
Indices: 78569237--78570885 Score: 2702
Period size: 549 Copynumber: 3.0 Consensus size: 546
78569227 CATTGGTACT
* *
78569237 AGCCCCTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATGACACAAGGAATCGTAAAAC
1 AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
* *
78569302 TCCTTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTACATTTAAC
66 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
* * *
78569367 TCCACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTATAAGCTCCTTTAAGAATTTGGCTGT
131 TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
*
78569432 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAACTTGATATGTAATTTTTTTAATAATTGAA
196 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAATTGATATGTAATTTTTTTAATAATTGAA
* *
78569497 GGAATTTACCGAATTGTTC--GT-C-TCTTTCCTTGTTGCATTAGGGTATGGCACTCGTGGTTTG
261 GGAATTTACCGAATTGTTCTTGTGCGTCTTTTCTTGTTGCATTAGGGTATGGCACCCGTGGTTTG
78569558 TACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCACTAT
326 TACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCAC-AT
* *
78569623 TCCTTGCCTTGGTTCTGGTTCAAGTTCAACTAACCCTTCCTCATCTTGAATGGTAATTGCATTGA
390 TCCTTGCCTTGGTTCTGGTTCAGGTTCAACTAACCCTTCATCATCTTGAATGGTAATTGCATTGA
* * *
78569688 GCTGTTCCCTTAGGTTAGATTCAATGTTACTTGGCAGGCTACCTTGTGGTCA-TTCAGAAATCAA
455 GCTGTTCCCTTAGGTTAGATTCAGTGTTACTCGGTAGGCTACCTTGTGGT-AGTTCAGAAATCAA
*
78569752 TTTGGTGAGTTGGCCTATCTGAGTTTAG
519 TTTGGTGAGTTGGCCTATCTGAGTTTCG
78569780 AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
1 AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
78569845 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
66 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
*
78569910 TCAACATGCGACGCCTCATCCAACTTTCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
131 TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
* * *
78569975 GTTTGGCATCTGCAAAAGAGCTTCAATAAACGGTAAGTTGATATGT-ATTTTTTTAATAATTAAA
196 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAATTGATATGTAATTTTTTTAATAATTGAA
* * * *
78570039 GGAATTTATCAAATTGTTCGTATGTGCAGTCTTTTCTTGTCGCATTAGGGTATGACACCCGTGGT
261 GGAATTTACCGAATTGTTC-T-TGTGC-GTCTTTTCTTGTTGCATTAGGGTATGGCACCCGTGGT
*
78570104 TTGTACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACAAT
323 TTGTACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCA-
* *
78570169 CGTTCCTTGCCTTGGTTTTGGTTCAGGTTCAACTAACCCTTCATCATCTTGAATGGTAATTGCAT
387 CATTCCTTGCCTTGGTTCTGGTTCAGGTTCAACTAACCCTTCATCATCTTGAATGGTAATTGCAT
* * *
78570234 TGAGCTATTCCCTTAGGTTAGATTTAGTGTTACTCGGTAGGCTACCTTGTGGTAGTTTAGAAATC
452 TGAGCTGTTCCCTTAGGTTAGATTCAGTGTTACTCGGTAGGCTACCTTGTGGTAGTTCAGAAATC
78570299 AATTTGGTGAGTTGGCCTATCTGAGTTTCG
517 AATTTGGTGAGTTGGCCTATCTGAGTTTCG
* *
78570329 AGCCCTTAAATCAGCCAAAGCATTATTAACATCTAAACTACCAATTACATAAGGAATCGTAAAAC
1 AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
*
78570394 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGTTGAGCAAACTGCATTTAAC
66 TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
78570459 TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
131 TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
* *
78570524 ATTTGGCATCTGCGAAAGAGCTTCAATAAATGGTAAATTGATATGTAATTTTTTTAATAATTGAA
196 GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAATTGATATGTAATTTTTTTAATAATTGAA
* * *
78570589 GGAATTTACCGAATTGTTCATTTGTGCGGTCTTTTCTTTTTGTATTAGGGTATGGCACCTGTGGT
261 GGAATTTACCGAATTGTTC--TTGTGC-GTCTTTTCTTGTTGCATTAGGGTATGGCACCCGTGGT
* * * * *
78570654 TTATACTCTTTACTTACCGATTGTTGCTCACTATGGCCTGCCTCACCTTTACCTTTACTTACCAC
323 TTGTACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCA-
*
78570719 CA-TCACTTGCCTTGGTTCTGATTCAGGTTCAACTAACCCTTCCA-CATCTTGAATGGTAATTGC
387 CATTC-CTTGCCTTGGTTCTGGTTCAGGTTCAACTAACCCTT-CATCATCTTGAATGGTAATTGC
* * * *
78570782 ATTGAGTTGTTCCCTTGGGTTAGATTCAGTGTTACTCGGTAGACTACCTTGTGGTCGTTCAGAAA
450 ATTGAGCTGTTCCCTTAGGTTAGATTCAGTGTTACTCGGTAGGCTACCTTGTGGTAGTTCAGAAA
78570847 TCAATTTGGTGAGTTGGCCTATCTGAGTTTCG
515 TCAATTTGGTGAGTTGGCCTATCTGAGTTTCG
78570879 AGCCCTT
1 AGCCCTT
78570886 GGATCGACGC
Statistics
Matches: 1029, Mismatches: 64, Indels: 19
0.93 0.06 0.02
Matches are distributed among these distances:
542 34 0.03
543 231 0.22
546 2 0.00
547 1 0.00
548 1 0.00
549 476 0.46
550 281 0.27
551 3 0.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (546 bp):
AGCCCTTAAATCAGCCAAAGCATTATTAACTTCTAAACTACCAATTACACAAGGAATCGTAAAAC
TCCCTAGATCTTTTAATTTGTTGGCCAGCTTATTCTGTAGTATGGCTGAGCAAACTGCATTTAAC
TCAACATGCGACGCCTCATCCAACTTCCGCTTATTTGTTAAAAGCTCCTTTAAGAATTTGGCTGC
GTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAATTGATATGTAATTTTTTTAATAATTGAA
GGAATTTACCGAATTGTTCTTGTGCGTCTTTTCTTGTTGCATTAGGGTATGGCACCCGTGGTTTG
TACTCTTTACTTACCGGTTGTTGCTCACTGTGGACTACCTCACCTTTACCTTTACTTACCACATT
CCTTGCCTTGGTTCTGGTTCAGGTTCAACTAACCCTTCATCATCTTGAATGGTAATTGCATTGAG
CTGTTCCCTTAGGTTAGATTCAGTGTTACTCGGTAGGCTACCTTGTGGTAGTTCAGAAATCAATT
TGGTGAGTTGGCCTATCTGAGTTTCG
Found at i:78583315 original size:5 final size:6
Alignment explanation
Indices: 78583277--78583322 Score: 65
Period size: 6 Copynumber: 7.3 Consensus size: 6
78583267 TAATTTAATT
*
78583277 AATAAA AATAAA AATCTAAA ACTAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AA--TAAA AATAAA AATAAA AATAAA AATAAA AA
78583323 ACATATAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 31 0.86
8 5 0.14
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:78583323 original size:20 final size:20
Alignment explanation
Indices: 78583277--78583316 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
78583267 TAATTTAATT
**
78583277 AATAAAAATAAAAATCTAAA
1 AATAAAAATAAAAATAAAAA
*
78583297 ACTAAAAATAAAAATAAAAA
1 AATAAAAATAAAAATAAAAA
78583317 TAAAAAACAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (20 bp):
AATAAAAATAAAAATAAAAA
Found at i:78583356 original size:9 final size:9
Alignment explanation
Indices: 78583342--78583400 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
78583332 TTTGTACAAA
78583342 TAATTCGGT
1 TAATTCGGT
*
78583351 TAATTCAGT
1 TAATTCGGT
*
78583360 TAATTTGAG-
1 TAATTCG-GT
78583369 TAATTCAGG-
1 TAATTC-GGT
* *
78583378 TAGTTCGGG
1 TAATTCGGT
78583387 TAATTCGGT
1 TAATTCGGT
78583396 TAATT
1 TAATT
78583401 TTATACTTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
8 2 0.05
9 36 0.90
10 2 0.05
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:78583372 original size:18 final size:18
Alignment explanation
Indices: 78583351--78583401 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
78583341 ATAATTCGGT
78583351 TAATTCAGTTAATTTGAG
1 TAATTCAGTTAATTTGAG
* * * *
78583369 TAATTCAGGTAGTTCGGG
1 TAATTCAGTTAATTTGAG
*
78583387 TAATTCGGTTAATTT
1 TAATTCAGTTAATTT
78583402 TATACTTATT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (18 bp):
TAATTCAGTTAATTTGAG
Found at i:78597043 original size:24 final size:24
Alignment explanation
Indices: 78596998--78597043 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
78596988 ATTTATTAGT
*
78596998 ATAATATATTTAGCATTTATTAAC
1 ATAATATATTTAGCATTGATTAAC
78597022 ATAATATATTT-GACATTGATTA
1 ATAATATATTTAG-CATTGATTA
78597044 GAATTAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (24 bp):
ATAATATATTTAGCATTGATTAAC
Found at i:78599169 original size:131 final size:131
Alignment explanation
Indices: 78598922--78599332 Score: 465
Period size: 131 Copynumber: 3.2 Consensus size: 131
78598912 TATTGTTTAC
* * * * * *
78598922 TTTATATATCATGAATAATCTTATTT-AGCTAGTTGATTT-ATATCGTTACTCCAAATAGCTTGC
1 TTTA-ATATCATGAACAATCTTATTTGAGTTAGTTGATTTAATATCGCTACTCCAAACAGCTCGT
* * * *
78598985 TGATTTAAGATCGCAGCTGATATCT-TTAAGGTTTGCTGATTTAAAATTACAACCTAAGTTCATT
65 TGATTTAAAATCGCAGCTGATAT-TGTTAAGGTTCGTTGATTTAAAATCACAACCTAAGTTCATT
*
78599049 CAA
129 CGA
* *
78599052 TTTAATACCATGAACAATCTTATTTGAGTTAGTTGATTTAATATCGCTACTCCAAACAACTCGTT
1 TTTAATATCATGAACAATCTTATTTGAGTTAGTTGATTTAATATCGCTACTCCAAACAGCTCGTT
* * * *
78599117 GATTTAAAATCGTAG-TCGATATTGTTAAGGTTCGTT-AGTTTAATATCGCAACCTAAGCTCATT
66 GATTTAAAATCGCAGCT-GATATTGTTAAGGTTCGTTGA-TTTAAAATCACAACCTAAGTTCATT
78599180 CGA
129 CGA
* * * * *
78599183 TTTAATATCGTGAACTATCTTATTTGAGTTAGTTGATTTAATATTGCTACTCC-AACTGTTCGTT
1 TTTAATATCATGAACAATCTTATTTGAGTTAGTTGATTTAATATCGCTACTCCAAACAGCTCGTT
* * ** * * * *
78599247 TATTTAATATCGCAGCTGATAACGTTAAGGTTCGTTGATCTAAAATCCCAATCTAAGTTCATTTG
66 GATTTAAAATCGCAGCTGATATTGTTAAGGTTCGTTGATTTAAAATCACAACCTAAGTTCATTCG
78599312 A
131 A
*
78599313 TTCAATATCATGAACAATCT
1 TTTAATATCATGAACAATCT
78599333 CAATTGTGTT
Statistics
Matches: 236, Mismatches: 38, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
129 19 0.08
130 95 0.40
131 122 0.52
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (131 bp):
TTTAATATCATGAACAATCTTATTTGAGTTAGTTGATTTAATATCGCTACTCCAAACAGCTCGTT
GATTTAAAATCGCAGCTGATATTGTTAAGGTTCGTTGATTTAAAATCACAACCTAAGTTCATTCG
A
Found at i:78599223 original size:64 final size:64
Alignment explanation
Indices: 78599034--78599226 Score: 151
Period size: 64 Copynumber: 3.0 Consensus size: 64
78599024 TTTAAAATTA
* * * *
78599034 CAACCTAAGTTCATTCAATTTAATACCATGAACAATCTTATTTGAGTTAGTTGATTTAATATCG
1 CAACCTAAGCTCATTCGATTTAATATCGTGAACAATCTTATTTGAGTTAGTTGATTTAATATCG
* * * * * * * * * * *
78599098 CTACTCCAAACAACTCGTT-GATTTAAAATCGT-AGTCGATATT-GTTAAGGTTCGTT-AGTTTA
1 C-A-ACC-TA-AGCTCATTCGATTTAATATCGTGA-ACAATCTTATTTGA-GTTAGTTGA-TTTA
78599159 ATATCG
59 ATATCG
*
78599165 CAACCTAAGCTCATTCGATTTAATATCGTGAACTATCTTATTTGAGTTAGTTGATTTAATAT
1 CAACCTAAGCTCATTCGATTTAATATCGTGAACAATCTTATTTGAGTTAGTTGATTTAATAT
78599227 TGCTACTCCA
Statistics
Matches: 92, Mismatches: 26, Indels: 22
0.66 0.19 0.16
Matches are distributed among these distances:
63 6 0.07
64 33 0.36
65 8 0.09
66 8 0.09
67 32 0.35
68 5 0.05
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (64 bp):
CAACCTAAGCTCATTCGATTTAATATCGTGAACAATCTTATTTGAGTTAGTTGATTTAATATCG
Found at i:78610357 original size:115 final size:115
Alignment explanation
Indices: 78610216--78610457 Score: 475
Period size: 115 Copynumber: 2.1 Consensus size: 115
78610206 TATTAATCAG
*
78610216 TCTAATTTATTTGTTTATTTCATTTTCAGATTTATTTAAGAAATTTGAAAAGAAAAAGTACTCAA
1 TCTAATTAATTTGTTTATTTCATTTTCAGATTTATTTAAGAAATTTGAAAAGAAAAAGTACTCAA
78610281 ATGTGGATGATTTTTGTTAGAAACAATTTCTAAAAATAAAATTCAAGATA
66 ATGTGGATGATTTTTGTTAGAAACAATTTCTAAAAATAAAATTCAAGATA
78610331 TCTAATTAATTTGTTTATTTCATTTTCAGATTTATTTAAGAAATTTGAAAAGAAAAAGTACTCAA
1 TCTAATTAATTTGTTTATTTCATTTTCAGATTTATTTAAGAAATTTGAAAAGAAAAAGTACTCAA
78610396 ATGTGGATGATTTTTGTTAGAAACAATTTCTAAAAATAAAATTCAAGATA
66 ATGTGGATGATTTTTGTTAGAAACAATTTCTAAAAATAAAATTCAAGATA
78610446 TCTAATTAATTT
1 TCTAATTAATTT
78610458 TTAAATCATA
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 126 1.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (115 bp):
TCTAATTAATTTGTTTATTTCATTTTCAGATTTATTTAAGAAATTTGAAAAGAAAAAGTACTCAA
ATGTGGATGATTTTTGTTAGAAACAATTTCTAAAAATAAAATTCAAGATA
Found at i:78611633 original size:27 final size:26
Alignment explanation
Indices: 78611603--78611677 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 26
78611593 AATTTTAGGT
*
78611603 AGATAATTATT-GTTATTAAATTTAATA
1 AGATAATTATTAGATA-T-AATTTAATA
*
78611630 AGATTATTATTAGATATAATTTAATA
1 AGATAATTATTAGATATAATTTAATA
78611656 A-A-AA-TATT--ATATAATTTAATA
1 AGATAATTATTAGATATAATTTAATA
78611677 A
1 A
78611678 TATTCTTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
21 14 0.32
23 4 0.09
24 1 0.02
25 1 0.02
26 10 0.23
27 11 0.25
28 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (26 bp):
AGATAATTATTAGATATAATTTAATA
Found at i:78611681 original size:18 final size:19
Alignment explanation
Indices: 78611643--78611681 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
78611633 TTATTATTAG
78611643 ATATAATTTAATAAAAATATT
1 ATATAATTTAAT--AAATATT
78611664 ATATAATTTAAT-AATATT
1 ATATAATTTAATAAATATT
78611682 CTTAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
21 12 0.67
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTAATAAATATT
Found at i:78616428 original size:38 final size:38
Alignment explanation
Indices: 78616386--78616462 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
78616376 TTCATAGTAT
* *
78616386 TAGCTTTTACAGAGATAGCATTGATTTTTCACATATCA
1 TAGCTTTTACAGAGATAGCATTGAGTTTCCACATATCA
78616424 TAGCTTTTACAGAGATAGCATTGAGTTTCCACATATCA
1 TAGCTTTTACAGAGATAGCATTGAGTTTCCACATATCA
78616462 T
1 T
78616463 TTAATACATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (38 bp):
TAGCTTTTACAGAGATAGCATTGAGTTTCCACATATCA
Found at i:78629929 original size:22 final size:24
Alignment explanation
Indices: 78629884--78629930 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
78629874 AGACATAAAA
* *
78629884 ATTTTATGTTAAAATAGTTGTTAT
1 ATTTTATGTTAAAATAGCTATTAT
78629908 ATTTT-TGTT-AAATAGCTATTAT
1 ATTTTATGTTAAAATAGCTATTAT
78629930 A
1 A
78629931 CGCAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 12 0.57
23 4 0.19
24 5 0.24
ACGTcount: A:0.34, C:0.02, G:0.11, T:0.53
Consensus pattern (24 bp):
ATTTTATGTTAAAATAGCTATTAT
Found at i:78629945 original size:25 final size:27
Alignment explanation
Indices: 78629916--78629968 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
78629906 ATATTTTTGT
78629916 TAAA-TAGCT-ATTATACGCAAATATA
1 TAAATTAGCTAATTATACGCAAATATA
** *
78629941 TAAATTATTTAATTATACGCATATATA
1 TAAATTAGCTAATTATACGCAAATATA
78629968 T
1 T
78629969 TATCATAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.17
26 3 0.13
27 16 0.70
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (27 bp):
TAAATTAGCTAATTATACGCAAATATA
Found at i:78642422 original size:89 final size:89
Alignment explanation
Indices: 78642328--78642507 Score: 351
Period size: 89 Copynumber: 2.0 Consensus size: 89
78642318 CCGTAAAAAC
78642328 AAAATCTTGAAAATACTAAAGATTTAAATTTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
1 AAAATCTTGAAAATACTAAAGATTTAAATTTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
*
78642393 ATTATTTTAGAGATTTAAAAAATT
66 ATCATTTTAGAGATTTAAAAAATT
78642417 AAAATCTTGAAAATACTAAAGATTTAAATTTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
1 AAAATCTTGAAAATACTAAAGATTTAAATTTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
78642482 ATCATTTTAGAGATTTAAAAAATT
66 ATCATTTTAGAGATTTAAAAAATT
78642506 AA
1 AA
78642508 TTTTAAAAAA
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.49, C:0.06, G:0.07, T:0.38
Consensus pattern (89 bp):
AAAATCTTGAAAATACTAAAGATTTAAATTTTTTGAGTTAATCAAATAAATTCATATTCAATAAA
ATCATTTTAGAGATTTAAAAAATT
Found at i:78646478 original size:43 final size:43
Alignment explanation
Indices: 78646384--78646550 Score: 162
Period size: 43 Copynumber: 3.9 Consensus size: 43
78646374 GGTTACTGAG
* * * *
78646384 ATGTGATTTCATGTAAGAACATGTCTGGGATATTGGCGTTGTA
1 ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCGTA
* *
78646427 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTA
1 ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCG-TA
* * * * *
78646471 AT-CGATTACGTATAAGACTC-TGTCTAGGATAGTGGCATCG-A
1 ATGTGATTACATGTAAGAC-CATGTCTGGGATATTGGCATCGTA
* *
78646512 TATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCAT
78646551 TGTACGAGTT
Statistics
Matches: 100, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 86 0.86
44 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCGTA
Found at i:78652929 original size:74 final size:74
Alignment explanation
Indices: 78652808--78652955 Score: 269
Period size: 74 Copynumber: 2.0 Consensus size: 74
78652798 CATCTGTTCT
78652808 TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCCATTATCAGGGGTTG
1 TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCCATTATCAGGGGTTG
78652873 GTACAGTGG
66 GTACAGTGG
* *
78652882 TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCTATTATCATGGGTTG
1 TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCCATTATCAGGGGTTG
*
78652947 GTATAGTGG
66 GTACAGTGG
78652956 CAAATCTAAG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.23, C:0.09, G:0.30, T:0.37
Consensus pattern (74 bp):
TTGTTAAGGGACTAGACTTGTTGGGTCAAGTGATTGTGTAAATCTTAGTCCATTATCAGGGGTTG
GTACAGTGG
Found at i:78659034 original size:40 final size:40
Alignment explanation
Indices: 78658979--78659057 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
78658969 AAAGGTTGGT
* *
78658979 TGTATAATCATCTTTTGTTAGCAAGTATCATTAAACATAG
1 TGTATAATCATCTTTTGTTAACAACTATCATTAAACATAG
*
78659019 TGTATGATCATCTTTTGTTAACAACTATCATTAAACATA
1 TGTATAATCATCTTTTGTTAACAACTATCATTAAACATA
78659058 TAAGTTTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (40 bp):
TGTATAATCATCTTTTGTTAACAACTATCATTAAACATAG
Found at i:78659807 original size:20 final size:20
Alignment explanation
Indices: 78659782--78659826 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
78659772 AGGGACTAAA
* *
78659782 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
78659802 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
78659822 ATGAA
1 ATGAA
78659827 TACTTGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:78670331 original size:47 final size:47
Alignment explanation
Indices: 78670253--78670632 Score: 607
Period size: 47 Copynumber: 8.1 Consensus size: 47
78670243 CCCTTCGGGA
* * * * * * *
78670253 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78670300 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78670347 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78670394 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78670441 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78670488 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78670535 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78670582 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78670629 CTTA
1 CTTA
78670633 CTATCATTTC
Statistics
Matches: 315, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 315 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78676913 original size:137 final size:137
Alignment explanation
Indices: 78676717--78677256 Score: 789
Period size: 137 Copynumber: 3.9 Consensus size: 137
78676707 GCTTTAATCC
* * * ** * *
78676717 ACTCTACTGTATCTTCAA-AGAGATAAGATTTGTGATTTATAGATTCAATCTGTTTCACTACAAC
1 ACTCTACTGCAACTT-AAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAAC
* * *
78676781 TCCAGGGAAATAAGACTTGCTATCTCCAGTCCGCTCCGCTGCAACTTTAGGGAGATAAGACTTGT
65 TCCAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAAGGAGATAAGACTTGT
78676846 TTTGATCT
130 TTTGATCT
*
78676854 ACTCTACTGCAACTTAAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAATT
1 ACTCTACTGCAACTTAAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACT
* * *
78676919 CCAGGGAAATAAGACTTGCTATCTTCAGCCCGCTCCGCTGCAACTTC-AGAGAAATAAGACTTAT
66 CCAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAAG-GAGATAAGACTTGT
78676983 TTTGATCT
130 TTTGATCT
* * * *
78676991 GCTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCATTGCAACT
1 ACTCTACTGCAACTTAAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACT
* *
78677056 CCAGGGAAATAAGATTTGCTATCTTCAGTCCGCTCCTCTGCAACTTCAAGGAGATAAGACTTGTT
66 CCAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAAGGAGATAAGACTTGTT
78677121 TTGATCT
131 TTGATCT
* * * *
78677128 GCTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTGCAATT
1 ACTCTACTGCAACTTAAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACT
* * *
78677193 CCAGGGAAATAAGACTTGCTATCTTCAG-CCTGCTCCACTGCAACCTCAAGGAGATACGACTTGT
66 CCAGGGAAATAAGACTTGCTATCTTCAGTCC-GCTCCGCTGCAACTTCAAGGAGATAAGACTTGT
78677257 AACTTTAACC
Statistics
Matches: 369, Mismatches: 30, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
136 5 0.01
137 362 0.98
138 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (137 bp):
ACTCTACTGCAACTTAAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAACT
CCAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAAGGAGATAAGACTTGTT
TTGATCT
Found at i:78677100 original size:45 final size:45
Alignment explanation
Indices: 78676777--78677255 Score: 190
Period size: 45 Copynumber: 10.5 Consensus size: 45
78676767 TGTTTCACTA
* * * *
78676777 CAACTCCAGGGAAATAAGACTTGCTATCTCCAGTCCGCTCCGCTG
1 CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCTCTG
* * * *
78676822 CAACTTTAGGGAGATAAGACTTG-T-T-TTGA-TCTACT-CTACTG
1 CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCT-CTG
* * * * * * *
78676863 CAACTTAAGAGAGATAAGA-TCTGCAATTTATAGCTTCAATCTGTTCCACTA
1 CAACTTCAGGGAAATAAGACT-TGC----TAT--CTTCAGTCTGCTCCTCTG
* * *
78676914 CAA-TTCCAGGGAAATAAGACTTGCTATCTTCAGCCCGCTCCGCTG
1 CAACTT-CAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCTCTG
* * *
78676959 CAACTTCAGAGAAATAAGAC-T--TATTTTGA-TCTGCT-CTACTG
1 CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCT-CTG
* * * *
78677000 CAACTTCAGAGAGATAAGA-TCTGCAATTTATAGCTTCAATCTGTTCCAT-TG
1 CAACTTCAGGGAAATAAGACT-TGC----TAT--CTTCAGTCTGCTCC-TCTG
* * *
78677051 CAACTCCAGGGAAATAAGATTTGCTATCTTCAGTCCGCTCCTCTG
1 CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCTCTG
* * *
78677096 CAACTTCAAGGAGATAAGACTTG-T-T-TTGA-TCTGCT-CTACTG
1 CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCT-CTG
* * * * *
78677137 CAACTTCAGAGAGATAAGA-TCTGCAATTTATAGCTTCAATCTGTTCCACTG
1 CAACTTCAGGGAAATAAGACT-TGC----TAT--CTTCAGTCTGCTCCTCTG
* *
78677188 CAA-TTCCAGGGAAATAAGACTTGCTATCTTCAGCCTGCTCCACTG
1 CAACTT-CAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCTCTG
* * * *
78677233 CAACCTCAAGGAGATACGACTTG
1 CAACTTCAGGGAAATAAGACTTG
78677256 TAACTTTAAC
Statistics
Matches: 326, Mismatches: 60, Indels: 96
0.68 0.12 0.20
Matches are distributed among these distances:
40 6 0.02
41 78 0.24
42 12 0.04
43 2 0.01
44 4 0.01
45 112 0.34
46 5 0.02
47 11 0.03
48 3 0.01
50 13 0.04
51 73 0.22
52 6 0.02
53 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
CAACTTCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCTCTG
Found at i:78677207 original size:274 final size:275
Alignment explanation
Indices: 78676673--78677236 Score: 869
Period size: 274 Copynumber: 2.0 Consensus size: 275
78676663 TCTTCAATGT
* ** * *
78676673 GCTCCACTGCAACTTCAGAGAGATAAGGTTTATAGCTTTAATCCACTCTACTGTATCTTCAAAGA
1 GCTCCACTGCAACTTCAGAGAAATAAGACTTATA--TTTAATCCACTCTACTGCAACTTCAAAGA
* ** *
78676738 GATAAGATTTGTGATTTATAGATTCAATCTGTTTCACTACAACTCCAGGGAAATAAGACTTGCTA
64 GATAAGATCTGCAATTTATAGATTCAATCTGTTCCACTACAACTCCAGGGAAATAAGACTTGCTA
* *
78676803 TCTCCAGTCCGCTCCGCTGCAACTTTAGGGAGATAAGACTTGTTTTGATCTACTCTACTGCAACT
129 TCTCCAGTCCGCTCCGCTGCAACTTCAAGGAGATAAGACTTGTTTTGATCTACTCTACTGCAACT
78676868 TAAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAATTCCAGGGAAATAAGA
194 TAAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAATTCCAGGGAAATAAGA
78676933 CTTGCTATCTTCAGCCC
259 CTTGCTATCTTCAGCCC
* * ** *
78676950 GCTCCGCTGCAACTTCAGAGAAATAAGACTTAT-TTTGATCTGCTCTACTGCAACTTCAGAGAGA
1 GCTCCACTGCAACTTCAGAGAAATAAGACTTATATTTAATCCACTCTACTGCAACTTCAAAGAGA
* * * *
78677014 TAAGATCTGCAATTTATAGCTTCAATCTGTTCCATTGCAACTCCAGGGAAATAAGATTTGCTATC
66 TAAGATCTGCAATTTATAGATTCAATCTGTTCCACTACAACTCCAGGGAAATAAGACTTGCTATC
* * * *
78677079 TTCAGTCCGCTCCTCTGCAACTTCAAGGAGATAAGACTTGTTTTGATCTGCTCTACTGCAACTTC
131 TCCAGTCCGCTCCGCTGCAACTTCAAGGAGATAAGACTTGTTTTGATCTACTCTACTGCAACTTA
*
78677144 AGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTGCAATTCCAGGGAAATAAGACT
196 AGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAATTCCAGGGAAATAAGACT
*
78677209 TGCTATCTTCAGCCT
261 TGCTATCTTCAGCCC
78677224 GCTCCACTGCAAC
1 GCTCCACTGCAAC
78677237 CTCAAGGAGA
Statistics
Matches: 260, Mismatches: 27, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
274 231 0.89
277 29 0.11
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (275 bp):
GCTCCACTGCAACTTCAGAGAAATAAGACTTATATTTAATCCACTCTACTGCAACTTCAAAGAGA
TAAGATCTGCAATTTATAGATTCAATCTGTTCCACTACAACTCCAGGGAAATAAGACTTGCTATC
TCCAGTCCGCTCCGCTGCAACTTCAAGGAGATAAGACTTGTTTTGATCTACTCTACTGCAACTTA
AGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAATTCCAGGGAAATAAGACT
TGCTATCTTCAGCCC
Found at i:78677363 original size:133 final size:133
Alignment explanation
Indices: 78677213--78677479 Score: 363
Period size: 133 Copynumber: 2.0 Consensus size: 133
78677203 AAGACTTGCT
* * * *
78677213 ATCTTCAGCCTGCTCCACTGCAACCTCAAGGAGATACGACTTGTAACTTTAACCTACTCCACCGT
1 ATCTTCAGCCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGCAACTTCAACCTACTCCACCGC
* *
78677278 ATCTACAGGGAGATAAGGTTAGCGGCTTCGATCTACTTCACTGCAACTTAAAGAAGACAAGATTC
66 ATCTACAGAGAGATAAGGTTAGCGGCTTCAATCTACTTCACTGCAACTTAAAGAAGACAAGATTC
78677343 GCC
131 GCC
* * * * **
78677346 ATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCAACTTCAACTTACTCTATTGC
1 ATCTTCAGCCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGCAACTTCAACCTACTCCACCGC
* * * * * * *
78677411 ATCTTCAGAGAGATAAGGTTAGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATTT
66 ATCTACAGAGAGATAAGGTTAGCGGCTTCAATCTACTTCACTGCAACTTAAAGAAGACAAGATTC
78677476 GCC
131 GCC
78677479 A
1 A
78677480 AAATTCGTAA
Statistics
Matches: 115, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
133 115 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (133 bp):
ATCTTCAGCCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGCAACTTCAACCTACTCCACCGC
ATCTACAGAGAGATAAGGTTAGCGGCTTCAATCTACTTCACTGCAACTTAAAGAAGACAAGATTC
GCC
Found at i:78682564 original size:27 final size:27
Alignment explanation
Indices: 78682533--78682710 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
78682523 TAAATTGTAC
78682533 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78682560 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * * *
78682586 ATGCACTAAGTGTGTGAATTGGCCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78682614 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78682642 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78682669 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78682696 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78682711 GACTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 103 0.82
28 22 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78682701 original size:82 final size:81
Alignment explanation
Indices: 78682530--78682710 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
78682520 GATTAAATTG
* *
78682530 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
* *
78682595 GTGTGTGAATTGGCCA
66 GTGTGCGAATTGACCA
* * ** *
78682611 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78682675 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78682693 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78682711 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78695709 original size:19 final size:20
Alignment explanation
Indices: 78695672--78695709 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
78695662 ATAAGGTGGT
78695672 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
78695692 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
78695710 TGGTGGTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:78708309 original size:13 final size:13
Alignment explanation
Indices: 78708291--78708316 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78708281 ATTTGCATAC
78708291 TGTCTTCAACAGG
1 TGTCTTCAACAGG
78708304 TGTCTTCAACAGG
1 TGTCTTCAACAGG
78708317 CTCGCAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Done.