Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 239 of 356
Found at i:78708384 original size:25 final size:25
Alignment explanation
Indices: 78708356--78708410 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
78708346 GATAAGCTCA
*
78708356 CAGCTCTCACTTCTCGCTAAGCTTG
1 CAGCTCTCACATCTCGCTAAGCTTG
* * *
78708381 CAGCTTTGACATCTTGCTAAGCTTG
1 CAGCTCTCACATCTCGCTAAGCTTG
78708406 CAGCT
1 CAGCT
78708411 TGCACATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (25 bp):
CAGCTCTCACATCTCGCTAAGCTTG
Found at i:78708411 original size:25 final size:27
Alignment explanation
Indices: 78708366--78708437 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 27
78708356 CAGCTCTCAC
*
78708366 TTCTCGCTAAGCTTGCAGCTTTG-ACA
1 TTCTTGCTAAGCTTGCAGCTTTGCACA
78708392 -TCTTGCTAAGCTTGCAGC-TTGCACA
1 TTCTTGCTAAGCTTGCAGCTTTGCACA
* * *
78708417 TTTTTACTGAGCTTGCAGCTT
1 TTCTTGCTAAGCTTGCAGCTT
78708438 ACACATTGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
24 3 0.08
25 20 0.51
26 15 0.38
27 1 0.03
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.38
Consensus pattern (27 bp):
TTCTTGCTAAGCTTGCAGCTTTGCACA
Found at i:78708436 original size:26 final size:26
Alignment explanation
Indices: 78708372--78708444 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
78708362 TCACTTCTCG
*
78708372 CTAAGCTTGCAGCTTTG-ACA-TCTTG
1 CTAAGCTTGCAGC-TTGCACATTCTTA
*
78708397 CTAAGCTTGCAGCTTGCACATTTTTA
1 CTAAGCTTGCAGCTTGCACATTCTTA
* *
78708423 CTGAGCTTGCAGCTTACACATT
1 CTAAGCTTGCAGCTTGCACATT
78708445 GGAAAGCTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 3 0.07
25 16 0.38
26 23 0.55
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (26 bp):
CTAAGCTTGCAGCTTGCACATTCTTA
Found at i:78711237 original size:21 final size:20
Alignment explanation
Indices: 78711200--78711243 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
78711190 AAAAAGAAAT
*
78711200 AGAAAAAGAAAAAGAGAGTG
1 AGAAAAACAAAAAGAGAGTG
* *
78711220 AGAAACAACAAAACGAGATTG
1 AGAAA-AACAAAAAGAGAGTG
78711241 AGA
1 AGA
78711244 CTGAAAAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.61, C:0.07, G:0.25, T:0.07
Consensus pattern (20 bp):
AGAAAAACAAAAAGAGAGTG
Found at i:78722261 original size:18 final size:18
Alignment explanation
Indices: 78722240--78722276 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
78722230 TTATAGACCA
78722240 ACTTAACATTACATAGAG
1 ACTTAACATTACATAGAG
*
78722258 ACTTAACATTATATAGAG
1 ACTTAACATTACATAGAG
78722276 A
1 A
78722277 ACTCATCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (18 bp):
ACTTAACATTACATAGAG
Found at i:78723837 original size:28 final size:27
Alignment explanation
Indices: 78723776--78723845 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 27
78723766 AATGAGATTG
78723776 GCACTAAGTGTGCGAGTTTAATTGCATA
1 GCACTAAGTGTGCGAGTTTAATT-CATA
* *
78723804 GTACTAAGTGTGCGAGTTTGATT-ATTAA
1 GCACTAAGTGTGCGAGTTTAATTCA-T-A
78723832 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78723846 GACTTACTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 1 0.03
28 35 0.95
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTTAATTCATA
Found at i:78728146 original size:46 final size:45
Alignment explanation
Indices: 78727998--78728166 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 45
78727988 TGTGTGAGTT
*
78727998 AGTGTAAGACATGTCTGGGACATGCATCAGGCACATTATGA-G-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGC-C-TTAAGACGAAGCC
* * * * * * * *
78728044 AGTGCAAGACCATTTTTGGGACATGGCATCAGCATTGAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTAAGACGA-AGCC
* * *
78728092 AGTTTAAGACATGTTTGGGACATGCATCGGCCTCAAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGACG-AAGCC
*
78728138 AGTGTAAGACATGTCTAGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
78728167 ACTGCGAGAT
Statistics
Matches: 96, Mismatches: 21, Indels: 12
0.74 0.16 0.09
Matches are distributed among these distances:
45 4 0.04
46 50 0.52
47 28 0.29
48 14 0.15
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGACGAAGCC
Found at i:78738575 original size:46 final size:46
Alignment explanation
Indices: 78738525--78738743 Score: 246
Period size: 46 Copynumber: 4.7 Consensus size: 46
78738515 TGGTTGAGCA
*
78738525 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
78738571 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
78738617 TTCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * **
78738662 CATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
78738710 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78738744 GGGGCGCGTT
Statistics
Matches: 147, Mismatches: 19, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
43 6 0.04
45 4 0.03
46 103 0.70
47 26 0.18
48 3 0.02
50 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:78746201 original size:46 final size:46
Alignment explanation
Indices: 78746151--78746462 Score: 305
Period size: 46 Copynumber: 6.7 Consensus size: 46
78746141 TGGTTGAGCA
* *
78746151 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
78746197 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
78746244 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
78746290 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
78746336 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
78746383 TCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
78746429 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
78746463 GGGCGGGTTA
Statistics
Matches: 218, Mismatches: 32, Indels: 32
0.77 0.11 0.11
Matches are distributed among these distances:
43 13 0.06
45 7 0.03
46 125 0.57
47 57 0.26
48 6 0.03
50 10 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:78746307 original size:93 final size:93
Alignment explanation
Indices: 78746148--78746318 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
78746138 GGATGGTTGA
* *
78746148 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
78746213 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
78746241 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
78746305 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
78746319 ACTTATGGAT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78746407 original size:139 final size:139
Alignment explanation
Indices: 78746152--78746462 Score: 568
Period size: 139 Copynumber: 2.2 Consensus size: 139
78746142 GGTTGAGCAT
* *
78746152 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAG
*
78746217 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGA
66 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGA
78746282 TGCGAACGC
131 TGCGAACGC
*
78746291 TCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAG
*
78746356 TTCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGA
66 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGA
78746421 TGCGAACGC
131 TGCGAACGC
*
78746430 CCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
78746463 GGGCGGGTTA
Statistics
Matches: 165, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 165 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (139 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAG
TCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGA
TGCGAACGC
Found at i:78748060 original size:6 final size:6
Alignment explanation
Indices: 78748049--78748094 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
78748039 TAGACACCTA
* * *
78748049 TTATTT TTATTT TT-TAT TTATTT TTA-CT TTATTT TTATCT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
78748095 ATATGTTGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
5 8 0.25
6 24 0.75
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:78748071 original size:17 final size:16
Alignment explanation
Indices: 78748049--78748096 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
78748039 TAGACACCTA
*
78748049 TTATTTTTATTTTTTAT
1 TTATTTTTATTTATT-T
78748066 TTATTTTTACTTTATTT
1 TTATTTTTA-TTTATTT
*
78748083 TTATCTTTATTTAT
1 TTATTTTTATTTAT
78748097 ATGTTGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 5 0.18
17 18 0.64
18 5 0.18
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTTATTTATTT
Found at i:78748084 original size:12 final size:11
Alignment explanation
Indices: 78748054--78748094 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
78748044 ACCTATTATT
78748054 TTTATTTTTTA-
1 TTTA-TTTTTAC
78748065 TTTATTTTTAC
1 TTTATTTTTAC
78748076 TTTATTTTTATC
1 TTTATTTTTA-C
78748088 TTTATTT
1 TTTATTT
78748095 ATATGTTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 6 0.21
11 14 0.50
12 8 0.29
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTATTTTTAC
Found at i:78751410 original size:6 final size:6
Alignment explanation
Indices: 78751385--78751459 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
78751375 AGTGTGAAAG
** **
78751385 AAAGCAA AAAGAGA ATAAGAA AAAGAA AAATGAA ATTGAA AAAGAA AGTGAA
1 AAAG-AA AAAGA-A A-AAGAA AAAGAA AAA-GAA AAAGAA AAAGAA AAAGAA
* *
78751437 AAAGAA AAAGAG AAGGAA AAAGA
1 AAAGAA AAAGAA AAAGAA AAAGA
78751460 GATCGAGATC
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
6 37 0.70
7 12 0.23
8 4 0.08
ACGTcount: A:0.71, C:0.01, G:0.21, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:78751516 original size:42 final size:41
Alignment explanation
Indices: 78751407--78751519 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 41
78751397 GAATAAGAAA
*
78751407 AAGAAAAATGAAATTGAAAAAGAAAGTGAAAAAGAAAAAGAG
1 AAGAAAAA-GAAATTGAAAAAGAGAGTGAAAAAGAAAAAGAG
* * * ** ***
78751449 AAGGAAAAAGAGATCGAGATCGAGAGTGAAAAAGAATGTGAG
1 AA-GAAAAAGAAATTGAAAAAGAGAGTGAAAAAGAAAAAGAG
78751491 AAGAAAAAGAAAATTGAAAAAGAGAGTGA
1 AAGAAAAAG-AAATTGAAAAAGAGAGTGA
78751520 GTATGAAGAA
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
41 7 0.13
42 42 0.76
43 6 0.11
ACGTcount: A:0.61, C:0.02, G:0.27, T:0.11
Consensus pattern (41 bp):
AAGAAAAAGAAATTGAAAAAGAGAGTGAAAAAGAAAAAGAG
Found at i:78751520 original size:30 final size:32
Alignment explanation
Indices: 78751475--78751534 Score: 81
Period size: 30 Copynumber: 1.9 Consensus size: 32
78751465 AGATCGAGAG
78751475 TGAAAAAGAATGTGAG-AAGAA-AAAGAAAAT
1 TGAAAAAGAATGTGAGTAAGAAGAAAGAAAAT
*
78751505 TGAAAAAGAGA-GTGAGTATGAAGAAAGAAA
1 TGAAAAAGA-ATGTGAGTAAGAAGAAAGAAA
78751535 GAAAAATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 14 0.54
31 5 0.19
32 7 0.27
ACGTcount: A:0.60, C:0.00, G:0.27, T:0.13
Consensus pattern (32 bp):
TGAAAAAGAATGTGAGTAAGAAGAAAGAAAAT
Found at i:78753550 original size:20 final size:21
Alignment explanation
Indices: 78753527--78753572 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
78753517 AACTCCAACC
78753527 AGCTCACTTGAGCTCG-TTTT
1 AGCTCACTTGAGCTCGATTTT
***
78753547 AGCTTGTTTGAGCTCGATTTT
1 AGCTCACTTGAGCTCGATTTT
78753568 AGCTC
1 AGCTC
78753573 GTTCCAGCTC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (21 bp):
AGCTCACTTGAGCTCGATTTT
Found at i:78753573 original size:11 final size:10
Alignment explanation
Indices: 78753537--78753575 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
78753527 AGCTCACTTG
78753537 AGCTCGTTTT
1 AGCTCGTTTT
* *
78753547 AGCTTGTTTG
1 AGCTCGTTTT
78753557 AGCTCGATTTT
1 AGCTCG-TTTT
78753568 AGCTCGTT
1 AGCTCGTT
78753576 CCAGCTCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.13, C:0.18, G:0.23, T:0.46
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:78753581 original size:21 final size:21
Alignment explanation
Indices: 78753537--78753586 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
78753527 AGCTCACTTG
* **
78753537 AGCTCG-TTTTAGCTTGTTTG
1 AGCTCGATTTTAGCTCGTTCC
78753557 AGCTCGATTTTAGCTCGTTCC
1 AGCTCGATTTTAGCTCGTTCC
78753578 AGCTC-ATTT
1 AGCTCGATTT
78753587 CTTTTCCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.44
Consensus pattern (21 bp):
AGCTCGATTTTAGCTCGTTCC
Found at i:78759831 original size:46 final size:45
Alignment explanation
Indices: 78759667--78759842 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 45
78759657 TGTAACCCGC
* * * *
78759667 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAC-ATTACAT
* * * * *
78759713 CCATGAGTGAACTCGAACTCAACTCAACAAGTTCAGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTACAT
* * *
78759763 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATT-ACAT
* *
78759806 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
78759843 TGCCCAAACA
Statistics
Matches: 102, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 57 0.56
47 24 0.24
48 2 0.02
49 3 0.03
50 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTACAT
Found at i:78759839 original size:93 final size:93
Alignment explanation
Indices: 78759674--78759846 Score: 247
Period size: 93 Copynumber: 1.9 Consensus size: 93
78759664 CGCCCATAAG
* * * ** *
78759674 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTTCATCCATGAGTGAACTCGAACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
78759739 ACAAGTTCAGATGCCTAGTTACATCTCA
66 ACAAGTTCAGATGCCTAGTTACATCTCA
* *
78759767 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
** *
78759832 ATGAGTTCGGATGCC
66 ACAAGTTCAGATGCC
78759847 CAAACATCCT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACAAGTTCAGATGCCTAGTTACATCTCA
Found at i:78762265 original size:15 final size:15
Alignment explanation
Indices: 78762241--78762318 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
78762231 AGGAAACCGA
78762241 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
78762256 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
78762270 AATAAAGAATTCC-AG
1 -ATAAAGAAATCCAAG
* *
78762285 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
78762301 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
78762316 ATA
1 ATA
78762319 TGATACTATG
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
14 2 0.04
15 49 0.94
16 1 0.02
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:78762274 original size:30 final size:30
Alignment explanation
Indices: 78762239--78762318 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
78762229 CAAGGAAACC
*
78762239 GAATAAAGAAATCCAAGATAGAGAAATCCA
1 GAATAAAGAAATCCAAGATAAAGAAATCCA
* *
78762269 GAATAAAGAATTCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAATCCA
* *
78762299 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
78762319 TGATACTATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 2 0.05
30 38 0.90
31 2 0.05
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAATCCA
Found at i:78765246 original size:19 final size:20
Alignment explanation
Indices: 78765213--78765252 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
78765203 ACTAAGGTAA
78765213 AAATTTTATGTTAATTCTTG
1 AAATTTTATGTTAATTCTTG
*
78765233 AAATTTTA-GTTAATTTTTG
1 AAATTTTATGTTAATTCTTG
78765252 A
1 A
78765253 GTTAGTTACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.55
Consensus pattern (20 bp):
AAATTTTATGTTAATTCTTG
Found at i:78766749 original size:40 final size:40
Alignment explanation
Indices: 78766694--78767371 Score: 1059
Period size: 40 Copynumber: 16.9 Consensus size: 40
78766684 GAGCATTTGA
* *
78766694 ATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
78766734 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78766774 ATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78766814 ATATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78766854 ATATATCCGGGCTAAGACCCGAAGGCATTGGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
78766894 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78766934 ATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78766974 ATATATATCTGGGCTAAGACCCGAAGGCATTTGTGTGAGTTG
1 --ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * *
78767016 ATATATCCGGGCTAAGACCCGCAGGCCTTTGTACGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78767056 ATATATCCGGGCTAAGACCCGTAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
78767096 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78767136 ACATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCGAGTTG
1 --ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78767178 ATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78767218 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78767258 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78767298 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * *
78767338 CTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
78767372 TTGTGGTAAT
Statistics
Matches: 592, Mismatches: 42, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
40 518 0.88
42 74 0.12
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:78767084 original size:162 final size:160
Alignment explanation
Indices: 78766694--78767371 Score: 1070
Period size: 162 Copynumber: 4.2 Consensus size: 160
78766684 GAGCATTTGA
*
78766694 ATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
*
78766759 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTGATATATCCGG
66 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
*
78766824 GCTAAGACCCGAAGGCATTTGTACGAGTTG
131 GCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78766854 ATATATCCGGGCTAAGACCCGAAGGCATTGGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* *
78766919 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTGATATATATCT
66 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG--ATATATCC
*
78766984 GGGCTAAGACCCGAAGGCATTTGTGTGAGTTG
129 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * *
78767016 ATATATCCGGGCTAAGACCCGCAGGCCTTTGTACGAGTTGATATATCCGGGCTAAGACCCGTAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* *
78767081 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCC
66 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG--ATATATCC
* *
78767146 GGGCTAAGACCCGCAGGCCTTTGTGCGAGTTG
129 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78767178 ATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * *
78767243 CAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGATATATCCG
66 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATATATCCG
*
78767307 GGCTAAGACCCGAAGGCATTCGTGCGAGTTG
130 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * * *
78767338 CTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGC
78767372 TTGTGGTAAT
Statistics
Matches: 481, Mismatches: 34, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
160 182 0.38
162 296 0.62
163 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (160 bp):
ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
GCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:78774703 original size:40 final size:40
Alignment explanation
Indices: 78774648--78775325 Score: 1032
Period size: 40 Copynumber: 16.9 Consensus size: 40
78774638 GAGCATTTGA
* **
78774648 ATATATCCGGGCTAAGACCCGCAGGCATTCATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78774688 ATATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * *
78774728 ATATATCTGGGCTAAGACCCGCAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
78774768 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78774808 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
78774848 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78774888 ATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78774928 ATATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 --ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78774970 ATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78775010 ATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78775050 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGGGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78775090 ACATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCGAGTTG
1 --ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * *
78775132 ATATATCCGAGCTAAGACCCGCAGGCCTTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78775172 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78775212 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
78775252 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * * *
78775292 CTATGCCCAGGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
78775326 TTGTGGTAAT
Statistics
Matches: 589, Mismatches: 45, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
40 515 0.87
42 74 0.13
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:78775019 original size:162 final size:160
Alignment explanation
Indices: 78774648--78775325 Score: 1043
Period size: 162 Copynumber: 4.2 Consensus size: 160
78774638 GAGCATTTGA
** *
78774648 ATATATCCGGGCTAAGACCCGCAGGCATTCATGCGAGTTGATATATCCAGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* *
78774713 CATTTGTGCGAGTTGATATATCTGGGCTAAGACCCGCAGGCATTCGTGCGAGTTGATATATCCGG
66 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
78774778 GCTAAGACCCGAAGGCATTTGTGCGAGTTG
131 GCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78774808 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* *
78774873 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTCGTGCGAGTTGATATATATCT
66 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG--ATATATCC
78774938 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
129 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78774970 ATATATCCGGGCTAAGACCCGCAGGCCTTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * *
78775035 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGGGAGTTGACATATATCC
66 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG--ATATATCC
* *
78775100 GGGCTAAGACCCGCAGGCCTTTGTGCGAGTTG
129 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
78775132 ATATATCCGAGCTAAGACCCGCAGGCCTTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * *
78775197 CAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGATATATCCG
66 CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATATATCCG
*
78775261 GGCTAAGACCCGAAGGCATTCGTGCGAGTTG
130 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * * * *
78775292 CTATGCCCAGGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGC
78775326 TTGTGGTAAT
Statistics
Matches: 477, Mismatches: 38, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
160 176 0.37
162 298 0.62
163 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (160 bp):
ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
GCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:78777337 original size:93 final size:93
Alignment explanation
Indices: 78777224--78777397 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
78777214 CCGCCCATAA
* * * *
78777224 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATGAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
78777289 AACAAGTTCGGATGCCTAGTTACATCTC
66 AACAAGTTCAGATGCCTAGTTACATCTC
* *
78777317 ACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAATTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
78777382 AACGAGTTCAGATGCC
66 AACAAGTTCAGATGCC
78777398 CAAACATCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
ACGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
AACAAGTTCAGATGCCTAGTTACATCTC
Found at i:78777385 original size:46 final size:44
Alignment explanation
Indices: 78777226--78777390 Score: 163
Period size: 46 Copynumber: 3.6 Consensus size: 44
78777216 GCCCATAAAC
* * * *
78777226 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATTGCATCCAT-AAT
* * * *
78777272 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT-C-TCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCATCCATAAT
78777319 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAATT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAA-T
78777365 GAACTCGGACTCAACTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
78777391 AGATGCCCAA
Statistics
Matches: 98, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 52 0.53
47 28 0.29
48 1 0.01
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAT
Found at i:78782387 original size:22 final size:22
Alignment explanation
Indices: 78782362--78782410 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
78782352 CTCGAAGCGA
*
78782362 AAGGAGTTTTTGGAACTCAAAG
1 AAGGAGTTTTTGGAACTCAAAC
78782384 AAGGAGTTTTTGGAACTCAAAC
1 AAGGAGTTTTTGGAACTCAAAC
78782406 AAGGA
1 AAGGA
78782411 AATATAACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.10, G:0.27, T:0.24
Consensus pattern (22 bp):
AAGGAGTTTTTGGAACTCAAAC
Found at i:78786543 original size:43 final size:42
Alignment explanation
Indices: 78786466--78786714 Score: 290
Period size: 43 Copynumber: 5.8 Consensus size: 42
78786456 CGCCGGTAAA
* * * *
78786466 TTTAGCGGCGTTTTTCTGAAAAAAGCGCCTCTAAAGACCAGGTCT
1 TTTAGCGGCG-CTTT-TAAAAAAAACGCCGCTAAAGACCAGG-CT
* *
78786511 TTTCA-CGGCGCCTTTAAAAAAAACGCTGCTAAAGACCAGCGCT
1 TTT-AGCGGCGCTTTTAAAAAAAACGCCGCTAAAGACCAG-GCT
* *
78786554 TTTAGTGGCGGCTTTT-AAAAAAACGCCGCGAAAGACC-GCGCT
1 TTTAGCGGC-GCTTTTAAAAAAAACGCCGCTAAAGACCAG-GCT
*
78786596 TTTAGCGGCGCTTTTAAAAAAAAACGCCGCGAAAGACCAGGGCT
1 TTTAGCGGCGCTTTT-AAAAAAAACGCCGCTAAAGACCA-GGCT
78786640 TTTAGCGGCGCTTTTAAAAAAAATC-CCGCTAAAGACCAGGGCT
1 TTTAGCGGCGCTTTTAAAAAAAA-CGCCGCTAAAGACCA-GGCT
78786683 TTTAGCGGCGCTTTTAAAAAAAACGCCGCTAA
1 TTTAGCGGCGCTTTTAAAAAAAACGCCGCTAA
78786715 TTTGCCCAGT
Statistics
Matches: 182, Mismatches: 12, Indels: 22
0.84 0.06 0.10
Matches are distributed among these distances:
41 6 0.03
42 15 0.08
43 124 0.68
44 27 0.15
45 9 0.05
46 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTAAAAAAAACGCCGCTAAAGACCAGGCT
Found at i:78786636 original size:129 final size:130
Alignment explanation
Indices: 78786466--78786711 Score: 338
Period size: 129 Copynumber: 1.9 Consensus size: 130
78786456 CGCCGGTAAA
* ** * * * *
78786466 TTTAGCGGCGTTTTTCTGAAAAAAGCGCCTCTAAAGACCAGGTCTTTTCA-CGGCGCCTTTAAAA
1 TTTAGCGGCGCTTTTCAAAAAAAAACGCCGCGAAAGACCAGGGCTTTT-AGCGGCGCCTTTAAAA
* *
78786530 AAAA-CGCTGCTAAAGACCAGCGCTTTTAGTGGCGGCTTTT-AAAAAAACGCCGCGAAAGACCGC
65 AAAATC-CCGCTAAAGACCAGCGCTTTTAGCGGC-GCTTTTAAAAAAAACGCCGCGAAAGACCGC
78786593 GCT
128 GCT
*
78786596 TTTAGCGGCGCTTTT-AAAAAAAAACGCCGCGAAAGACCAGGGCTTTTAGCGGCGCTTTTAAAAA
1 TTTAGCGGCGCTTTTCAAAAAAAAACGCCGCGAAAGACCAGGGCTTTTAGCGGCGCCTTTAAAAA
*
78786660 AAATCCCGCTAAAGACCAGGGCTTTTAGCGGCGCTTTTAAAAAAAACGCCGC
66 AAATCCCGCTAAAGACCAGCGCTTTTAGCGGCGCTTTTAAAAAAAACGCCGC
78786712 TAATTTGCCC
Statistics
Matches: 102, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
128 7 0.07
129 80 0.78
130 15 0.15
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (130 bp):
TTTAGCGGCGCTTTTCAAAAAAAAACGCCGCGAAAGACCAGGGCTTTTAGCGGCGCCTTTAAAAA
AAATCCCGCTAAAGACCAGCGCTTTTAGCGGCGCTTTTAAAAAAAACGCCGCGAAAGACCGCGCT
Found at i:78787033 original size:21 final size:21
Alignment explanation
Indices: 78787008--78787055 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
78786998 TTCTGCTCTG
78787008 CTCCGCCTCCC-TCACTGCTGC
1 CTCCGCCTCCCGT-ACTGCTGC
78787029 CTCCGCCTCCCGTACTGCTGC
1 CTCCGCCTCCCGTACTGCTGC
78787050 CTCCGC
1 CTCCGC
78787056 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.04, C:0.56, G:0.17, T:0.23
Consensus pattern (21 bp):
CTCCGCCTCCCGTACTGCTGC
Found at i:78792342 original size:7 final size:7
Alignment explanation
Indices: 78792332--78792384 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
78792322 AATTCAAAAT
78792332 TAAACCC
1 TAAACCC
78792339 TAAACCC
1 TAAACCC
* *
78792346 TAAGCCT
1 TAAACCC
*
78792353 TAGACCC
1 TAAACCC
78792360 TAAACCC
1 TAAACCC
* *
78792367 TATACCT
1 TAAACCC
*
78792374 TGAACCC
1 TAAACCC
78792381 TAAA
1 TAAA
78792385 ACACTAAAAA
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.38, C:0.36, G:0.06, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:78792361 original size:21 final size:21
Alignment explanation
Indices: 78792334--78792384 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
78792324 TTCAAAATTA
78792334 AACCCTAAACCCTA-AGCCTT-
1 AACCCTAAACCCTATA-CCTTG
78792354 AGACCCTAAACCCTATACCTTG
1 A-ACCCTAAACCCTATACCTTG
78792376 AACCCTAAA
1 AACCCTAAA
78792385 ACACTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.04
21 25 0.89
22 2 0.07
ACGTcount: A:0.37, C:0.37, G:0.06, T:0.20
Consensus pattern (21 bp):
AACCCTAAACCCTATACCTTG
Found at i:78792542 original size:7 final size:7
Alignment explanation
Indices: 78792480--78792543 Score: 58
Period size: 7 Copynumber: 9.1 Consensus size: 7
78792470 CTAAGACTCT
78792480 AACCCTA
1 AACCCTA
* *
78792487 TACCATA
1 AACCCTA
78792494 AACCCTA
1 AACCCTA
78792501 AACGCC-A
1 AAC-CCTA
78792508 AACCCTA
1 AACCCTA
*
78792515 AACCCCA
1 AACCCTA
**
78792522 AATACTA
1 AACCCTA
*
78792529 GACCCTA
1 AACCCTA
78792536 AACCCTA
1 AACCCTA
78792543 A
1 A
78792544 TTAACCCCTA
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
6 2 0.05
7 39 0.91
8 2 0.05
ACGTcount: A:0.44, C:0.39, G:0.03, T:0.14
Consensus pattern (7 bp):
AACCCTA
Found at i:78792962 original size:14 final size:13
Alignment explanation
Indices: 78792916--78792977 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 13
78792906 ACCTCAAACT
*
78792916 CTAAATCATAAAAC
1 CTAAATCAT-AACC
*
78792930 ATAAATCATCAACC
1 CTAAATCAT-AACC
78792944 CTAAATCATAACC
1 CTAAATCATAACC
*
78792957 CTTAAACCCATAACCC
1 C-TAAA-TCATAA-CC
78792973 CTAAA
1 CTAAA
78792978 CCTATAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 5 0.12
14 23 0.57
15 9 0.22
16 3 0.08
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (13 bp):
CTAAATCATAACC
Found at i:78792970 original size:15 final size:15
Alignment explanation
Indices: 78792950--78792984 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
78792940 AACCCTAAAT
*
78792950 CATAACCCTTAAACC
1 CATAACCCCTAAACC
78792965 CATAACCCCTAAACC
1 CATAACCCCTAAACC
*
78792980 TATAA
1 CATAA
78792985 AAATATTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAACCCCTAAACC
Found at i:78793610 original size:74 final size:74
Alignment explanation
Indices: 78793527--78793685 Score: 291
Period size: 74 Copynumber: 2.1 Consensus size: 74
78793517 ATTTTTGGGG
*
78793527 AAACGCCGCTACTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTCAACATTTTAGCGGCG
1 AAACGCCGCTACTGCCAAAGGAGCACATATAAAACGACGCCGTTTTCCTCAACATTTTAGCGGCG
78793592 TTTTTTCAA
66 TTTTTTCAA
* *
78793601 AAACACCGCTACTGCCAAAGGAGCACATATAAAACGACGCCGTTTTCCTCAACATTTTAGTGGCG
1 AAACGCCGCTACTGCCAAAGGAGCACATATAAAACGACGCCGTTTTCCTCAACATTTTAGCGGCG
78793666 TTTTTTCAA
66 TTTTTTCAA
78793675 AAACGCCGCTA
1 AAACGCCGCTA
78793686 AAGTTTGATC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 81 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (74 bp):
AAACGCCGCTACTGCCAAAGGAGCACATATAAAACGACGCCGTTTTCCTCAACATTTTAGCGGCG
TTTTTTCAA
Found at i:78793704 original size:114 final size:114
Alignment explanation
Indices: 78793586--78794142 Score: 796
Period size: 114 Copynumber: 4.9 Consensus size: 114
78793576 CAACATTTTA
*** * * *
78793586 GCGGCGTTTTTTCAAAAACACCGCTACTGCCAAAGGAGCACATATAAAACGACGCCGTTTTCCTC
1 GCGGCGTTTTTGGGAAAACGCCGCTATTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
78793651 AACATTTTAGTGGCGTTTTTTCAAAAACGCCGCTAAAGTTTGATCTTCT
66 AACATTTTAGTGGCGTTTTTTCAAAAACGCCGCTAAAGTTTGATCTTCT
* *
78793700 GCGGCGTTTTTGGGAAAACGCTGTTATTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
1 GCGGCGTTTTTGGGAAAACGCCGCTATTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
** *
78793765 AACATTTTAGCAGTGTTTTTTCAAAAACGCCGCTAAAGTTTGATCTTCT
66 AACATTTTAGTGGCGTTTTTTCAAAAACGCCGCTAAAGTTTGATCTTCT
* *
78793814 ACGGCGTTTTTGGGAAAACGCCGCTATTACCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
1 GCGGCGTTTTTGGGAAAACGCCGCTATTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
* *
78793879 AACATTTTAGCGGCGTTTTTTCAAAAACGCCGCTAAAGTTTGATCTTTT
66 AACATTTTAGTGGCGTTTTTTCAAAAACGCCGCTAAAGTTTGATCTTCT
*
78793928 GCGGCGTTTTTAGGAAAACGCCGCTATTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
1 GCGGCGTTTTTGGGAAAACGCCGCTATTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
* *
78793993 AACATTTTAGTGGCGTTTTGTTGAAAAACGCCGCGAAAG-TTGATCTAT-T
66 AACATTTTAGTGGCGTTTT-TTCAAAAACGCCGCTAAAGTTTGATCT-TCT
* * * * * * * * * * *
78794042 GCGGTGTTTTCGTGAAAACGCCGCTACTGACAATGAAGCTCATATAAAATGACGTCGTTCTCCTT
1 GCGGCGTTTTTGGGAAAACGCCGCTATTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
78794107 AACATTTTAGTGGCG-TTTTTCTAAGAAACGCCGCTA
66 AACATTTTAGTGGCGTTTTTTC-AA-AAACGCCGCTA
78794143 GAGGTCCTCC
Statistics
Matches: 401, Mismatches: 38, Indels: 8
0.90 0.09 0.02
Matches are distributed among these distances:
112 2 0.00
113 5 0.01
114 376 0.94
115 18 0.04
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (114 bp):
GCGGCGTTTTTGGGAAAACGCCGCTATTGCCAAAGGAGCACATATAAAACGACGTCGTTTTCCTC
AACATTTTAGTGGCGTTTTTTCAAAAACGCCGCTAAAGTTTGATCTTCT
Found at i:78794279 original size:154 final size:149
Alignment explanation
Indices: 78793998--78794379 Score: 381
Period size: 153 Copynumber: 2.5 Consensus size: 149
78793988 TCCTCAACAT
* * * *
78793998 TTTAGTGGCGTTTTGTTGAAAAACGCCGCGAAAGTTGATCTATTGCGGTGTTTTCGTG-AAAACG
1 TTTAGCGGCGTTTT-TTGAAAAACGCCGCTAAAGTTGATCTATTGCGGCGTTTTTG-GAAAAACG
* * * *
78794062 CCGCTACTGACAATGAAGCTCATATAAAATGACGTCGTTCTCCTTAACATTTTAGTGGCGTTTTT
64 -C-C-ACT-AAAATGAAGCTCATATAAAACGACGTCGTTCTCATTAACATTTTAGCGGCGTTTTT
* * * *
78794127 CTAAGAAACGCCGCTAGAGGTCC-TCC
125 C-AAAAAACACCGCTAAAGG-CCGACC
*
78794153 TTTAGCGGCGTTGTTTTGAAAAATGCCGCTAAAGTTTGATCTATTGCGGCGTTTTTGGAAAAACG
1 TTTAGCGGCGTT-TTTTGAAAAACGCCGCTAAAG-TTGATCTATTGCGGCGTTTTTGGAAAAACG
* * * * *
78794218 CCACTAAAATGTTAAGCTCATGTAAAACGATGTCGTTTTGATTAACCTTTTAGCGGCGTTTTTCA
64 CCACTAAAATG--AAGCTCATATAAAACGACGTCGTTCTCATTAACATTTTAGCGGCGTTTTTCA
*
78794283 AAAAACACCGGTAAAGGCCGACC
127 AAAAACACCGCTAAAGGCCGACC
* ** * * * *
78794306 TATAGCGGCGCTTTTTCAAAAAACACCGCTAAAGGTCGAACTATTGCGGCGTTTTTTGAAAAACG
1 TTTAGCGGCG-TTTTTTGAAAAACGCCGCTAAA-GTTGATCTATTGCGGCGTTTTTGGAAAAACG
*
78794371 CCGCTAAAA
64 CCACTAAAA
78794380 CTCCGTCTAT
Statistics
Matches: 191, Mismatches: 28, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
152 7 0.04
153 79 0.41
154 47 0.25
155 30 0.16
156 28 0.15
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (149 bp):
TTTAGCGGCGTTTTTTGAAAAACGCCGCTAAAGTTGATCTATTGCGGCGTTTTTGGAAAAACGCC
ACTAAAATGAAGCTCATATAAAACGACGTCGTTCTCATTAACATTTTAGCGGCGTTTTTCAAAAA
ACACCGCTAAAGGCCGACC
Found at i:78794324 original size:41 final size:40
Alignment explanation
Indices: 78794268--78794378 Score: 150
Period size: 41 Copynumber: 2.8 Consensus size: 40
78794258 ATTAACCTTT
* *
78794268 TAGCGGCGTTTTTCAAAAAACACCGGTAAAGGCCGACCTA
1 TAGCGGCGTTTTTCAAAAAACACCGCTAAAGGCCGAACTA
*
78794308 TAGCGGCGCTTTTTCAAAAAACACCGCTAAAGGTCGAACTA
1 TAGCGGCG-TTTTTCAAAAAACACCGCTAAAGGCCGAACTA
* ** *
78794349 TTGCGGCGTTTTTTGAAAAACGCCGCTAAA
1 TAGCGGCGTTTTTCAAAAAACACCGCTAAA
78794379 ACTCCGTCTA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
40 27 0.43
41 36 0.57
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (40 bp):
TAGCGGCGTTTTTCAAAAAACACCGCTAAAGGCCGAACTA
Found at i:78795504 original size:56 final size:56
Alignment explanation
Indices: 78795418--78795537 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
78795408 ACAAGGGATG
78795418 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
78795474 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78795530 ATGGGCAA
1 ATGGGCAA
78795538 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:78798328 original size:39 final size:40
Alignment explanation
Indices: 78798124--78798346 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
78798114 TTGAATGCTG
* * * * * *
78798124 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
78798164 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
78798204 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
78798244 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
78798284 TCCGGGTTATGTCCCGAAGGCATT-ATGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
78798323 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
78798347 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 34 0.21
40 118 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:78798366 original size:79 final size:80
Alignment explanation
Indices: 78798199--78798381 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
78798189 GTGCGAGATA
* * * *
78798199 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
78798264 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
78798279 TTAAATCCGGGTTATGTCCCGAAGGCATT-ATGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
78798343 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
78798358 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
78798382 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:78814326 original size:16 final size:16
Alignment explanation
Indices: 78814302--78814332 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78814292 CATCTTCACT
78814302 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
78814318 TACTTACTTACTTAA
1 TACTCACTTACTTAA
78814333 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:78814338 original size:20 final size:20
Alignment explanation
Indices: 78814299--78814338 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
78814289 AAACATCTTC
* *
78814299 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
78814319 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
78814339 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:78814726 original size:55 final size:53
Alignment explanation
Indices: 78814584--78814775 Score: 174
Period size: 55 Copynumber: 3.5 Consensus size: 53
78814574 TTACCACTGT
*
78814584 CATGTC-TCGACATGGTCTTACATGGTATCGTTGCCTTATGAACTCACCAATGC
1 CATGTCTTC-ACATGGTCTTACATGGTATCATTGCCTTATGAACTCACCAATGC
** ** * * * * *
78814637 CATACCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCAATGC
1 CATGTCTTCACATGGTCTTACATGGTATCATTGCCTTAT-G-AACTCACCAATGC
* *
78814692 CATGTCTTCACATGGTCTTACATGGTATCATTGCCTTA-GAAACCTTACCAATTTC
1 CATGTCTTCACATGGTCTTACATGGTATCATTGCCTTATG-AA-CTCACCAA-TGC
**
78814747 CAT-TCCTTGGCATGGTCTTACATGGTATC
1 CATGT-CTTCACATGGTCTTACATGGTATC
78814776 CTTAAACCCT
Statistics
Matches: 112, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
53 33 0.29
54 10 0.09
55 69 0.62
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
CATGTCTTCACATGGTCTTACATGGTATCATTGCCTTATGAACTCACCAATGC
Found at i:78825061 original size:38 final size:38
Alignment explanation
Indices: 78825010--78825089 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
78825000 AATAAGTTAG
78825010 TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
1 TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
78825048 TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
1 TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
78825086 TCAT
1 TCAT
78825090 CATTTAACAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.40
Consensus pattern (38 bp):
TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
Found at i:78832055 original size:19 final size:18
Alignment explanation
Indices: 78832004--78832058 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 18
78831994 GTTCATCAAA
78832004 ATTTTA-AAAAAATAATT
1 ATTTTATAAAAAATAATT
78832021 ATTTTAT---AAATGAATT
1 ATTTTATAAAAAAT-AATT
*
78832037 GTTTTATAAAAAATAAATT
1 ATTTTATAAAAAAT-AATT
78832056 ATT
1 ATT
78832059 ATTTTTCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 4 0.13
16 10 0.33
17 6 0.20
19 10 0.33
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (18 bp):
ATTTTATAAAAAATAATT
Found at i:78835940 original size:27 final size:26
Alignment explanation
Indices: 78835909--78836068 Score: 151
Period size: 27 Copynumber: 6.0 Consensus size: 26
78835899 GGTCACACGG
*
78835909 TGATTAGCAAAATTACCAAAATACTCC
1 TGATTTGCAAAATTACCAAAATAC-CC
** *
78835936 TGATTTGTGAAATTACCGAAATACCC
1 TGATTTGCAAAATTACCAAAATACCC
* *
78835962 TCGATGTGTAAAATTACCAAAATTACCC
1 T-GATTTGCAAAATTACCAAAA-TACCC
* *
78835990 TGATTTGGAAAATTACTAAAATACCC
1 TGATTTGCAAAATTACCAAAATACCC
* * *
78836016 TTAATTTGGAAAATTACAAAAATACCCC
1 -TGATTTGCAAAATTACCAAAATA-CCC
*
78836044 TGATTTACAAAATTA-CAGAAATACC
1 TGATTTGCAAAATTACCA-AAATACC
78836069 ATTGGTTTGT
Statistics
Matches: 112, Mismatches: 16, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
26 11 0.10
27 92 0.82
28 9 0.08
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (26 bp):
TGATTTGCAAAATTACCAAAATACCC
Found at i:78836082 original size:27 final size:27
Alignment explanation
Indices: 78835917--78836106 Score: 147
Period size: 27 Copynumber: 7.0 Consensus size: 27
78835907 GGTGATTAGC
78835917 AAAATTACCA-AAATACTCC-TGATTTGT
1 AAAATTA-CAGAAATAC-CCTTGATTTGT
* * * *
78835944 GAAATTACCGAAATACCCTCGATGTGT
1 AAAATTACAGAAATACCCTTGATTTGT
*
78835971 AAAATTACCA-AAATTACCC-TGATTTGG
1 AAAATTA-CAGAAA-TACCCTTGATTTGT
* *
78835998 AAAATTACTA-AAATACCCTTAATTTGG
1 AAAATTAC-AGAAATACCCTTGATTTGT
* * **
78836025 AAAATTACAAAAATACCCCTGATTTAC
1 AAAATTACAGAAATACCCTTGATTTGT
* *
78836052 AAAATTACAGAAATACCATTGGTTTGT
1 AAAATTACAGAAATACCCTTGATTTGT
** * *
78836079 AAAATTATTGAAATATCCTTGGTTTGT
1 AAAATTACAGAAATACCCTTGATTTGT
78836106 A
1 A
78836107 GATTTACCAA
Statistics
Matches: 132, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
26 10 0.08
27 116 0.88
28 6 0.05
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGATTTGT
Found at i:78836083 original size:54 final size:54
Alignment explanation
Indices: 78835917--78836085 Score: 180
Period size: 54 Copynumber: 3.1 Consensus size: 54
78835907 GGTGATTAGC
* * ** * * *
78835917 AAAATTACCAAAATACTCCTGATTTGTGAAATTACCGAAATACCCTCGATGTGT
1 AAAATTACAAAAATACCCCTGATTTGCAAAATTACAGAAATACCCTTGATTTGT
* * * *
78835971 AAAATTACCAAAATTA-CCCTGATTTGGAAAATTACTA-AAATACCCTTAATTTGG
1 AAAATTA-CAAAAATACCCCTGATTTGCAAAATTAC-AGAAATACCCTTGATTTGT
* * *
78836025 AAAATTACAAAAATACCCCTGATTTACAAAATTACAGAAATACCATTGGTTTGT
1 AAAATTACAAAAATACCCCTGATTTGCAAAATTACAGAAATACCCTTGATTTGT
78836079 AAAATTA
1 AAAATTA
78836086 TTGAAATATC
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
53 8 0.09
54 80 0.85
55 6 0.06
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (54 bp):
AAAATTACAAAAATACCCCTGATTTGCAAAATTACAGAAATACCCTTGATTTGT
Found at i:78836400 original size:41 final size:41
Alignment explanation
Indices: 78836355--78836473 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
78836345 GAAGAAATTG
* *
78836355 AGGATCGCATGGTTGCTTGACGACCGTGGATCCATCGATTT
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
*
78836396 AGGATCGCATGGTTGCTTGATGACCGTGGATCCACCGATTA
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
* *
78836437 AGGATGGCATAGTTGCTTGACGACCGTGGATCCACCG
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
78836474 GTGGCTTTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (41 bp):
AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
Found at i:78839560 original size:27 final size:27
Alignment explanation
Indices: 78839530--78839628 Score: 126
Period size: 27 Copynumber: 3.7 Consensus size: 27
78839520 CTCATATCTG
* * *
78839530 TAGGCTAGTATTATTGAAATGCCCCTA
1 TAGGGTAGAATTACTGAAATGCCCCTA
** *
78839557 TAGGGTAGAATTACTGAAATATCCTTA
1 TAGGGTAGAATTACTGAAATGCCCCTA
* *
78839584 TAGGATAGAATTACTGAAATGCCCCTG
1 TAGGGTAGAATTACTGAAATGCCCCTA
78839611 TAGGGTAGAATTACTGAA
1 TAGGGTAGAATTACTGAA
78839629 TACCCTTGGT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATGCCCCTA
Found at i:78839659 original size:27 final size:27
Alignment explanation
Indices: 78839627--78839921 Score: 240
Period size: 27 Copynumber: 10.9 Consensus size: 27
78839617 AGAATTACTG
* **
78839627 AATACCCTTGGTTTACAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* *
78839654 AATA-CCTTCGATTAGCAAAATTACCAA
1 AATACCCTT-GATTTGTAAAATTACCAA
* * *
78839681 AATATCCTTGGTTTGTAAAATTACCAT
1 AATACCCTTGATTTGTAAAATTACCAA
* *
78839708 AATGCCCTTGGTTTGTAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * * * *
78839735 AATACCATTAATTTTTGAAATTACCGA
1 AATACCCTTGATTTGTAAAATTACCAA
* *
78839762 AATAACCTCGATTTGTAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* **
78839789 AATA-CCTCTGATTTGGAAAATTACTGA
1 AATACCCT-TGATTTGTAAAATTACCAA
*
78839816 AATACCCTTGATTTGGAAAATTA-CAGA
1 AATACCCTTGATTTGTAAAATTACCA-A
** **
78839843 AATGTCCTTGATTTACAAAATTA-CAGA
1 AATACCCTTGATTTGTAAAATTACCA-A
**
78839870 AATACCCTTGACTTTCAAAAATTA-CAGA
1 AATACCCTTGA-TTTGTAAAATTACCA-A
* *
78839898 AATACCATTGGTTTGTAAAATTAC
1 AATACCCTTGATTTGTAAAATTAC
78839922 TGAGATAACC
Statistics
Matches: 219, Mismatches: 42, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
26 7 0.03
27 182 0.83
28 30 0.14
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.33
Consensus pattern (27 bp):
AATACCCTTGATTTGTAAAATTACCAA
Found at i:78840251 original size:41 final size:41
Alignment explanation
Indices: 78840199--78840322 Score: 185
Period size: 41 Copynumber: 3.0 Consensus size: 41
78840189 GAGGAAAAAA
* *
78840199 TTGAAGATCGCATGGTTGCTTGATGACCGTGGATCCACCGG
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGG
* * * *
78840240 TTGAGGATCGCATGGTTACTTGACAACTGTGGATCCACCGA
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGG
*
78840281 TTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGG
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGG
78840322 T
1 T
78840323 GGCTTTTAAG
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (41 bp):
TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGG
Found at i:78840514 original size:22 final size:22
Alignment explanation
Indices: 78840462--78840526 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
78840452 GCCAATTATT
* *
78840462 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
78840484 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
78840506 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
78840527 ATGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:78842220 original size:16 final size:16
Alignment explanation
Indices: 78842199--78842231 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
78842189 AACTCTATGA
78842199 GTAGAATGATACATTG
1 GTAGAATGATACATTG
78842215 GTAGAATGATACATTG
1 GTAGAATGATACATTG
78842231 G
1 G
78842232 ACTGGACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (16 bp):
GTAGAATGATACATTG
Found at i:78844108 original size:26 final size:26
Alignment explanation
Indices: 78844072--78844124 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
78844062 TCGATATCGA
78844072 TAGCCAAGCTATGGTCTTACATGATG
1 TAGCCAAGCTATGGTCTTACATGATG
78844098 TAGCCAAGCTATGGTCTTACATGATG
1 TAGCCAAGCTATGGTCTTACATGATG
78844124 T
1 T
78844125 CCCATATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
TAGCCAAGCTATGGTCTTACATGATG
Found at i:78853592 original size:18 final size:20
Alignment explanation
Indices: 78853556--78853602 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
78853546 AGTTGTAAGT
78853556 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
78853576 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
78853595 ATGATATA
1 AT-ATATA
78853603 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:78854072 original size:50 final size:50
Alignment explanation
Indices: 78853953--78854386 Score: 426
Period size: 50 Copynumber: 8.6 Consensus size: 50
78853943 GTTGTGAGAA
* * * *
78853953 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* *
78854005 CACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
78854055 CCCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAGTTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGT
* * *
78854106 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
78854156 CACATGTTTAGTACTAAGTGCAAGCTACTACGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
** * * * * *
78854206 TGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCG-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT
* * * * * * *
78854257 CACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
78854307 CACATATGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
78854357 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
78854387 TGCATACCAG
Statistics
Matches: 314, Mismatches: 60, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
48 3 0.01
49 5 0.02
50 197 0.63
51 78 0.25
52 31 0.10
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:78854141 original size:101 final size:101
Alignment explanation
Indices: 78853953--78854388 Score: 450
Period size: 101 Copynumber: 4.3 Consensus size: 101
78853943 GTTGTGAGAA
* * * * * * * *
78853953 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGACAGTTTTAGGCCACGTGTTTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAG--ATATGTCACGTGTGTAGT
78854017 ACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
64 ACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
78854055 CCCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAGTTTTGATCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAGATATG-TCACGTGTGTAGTA
* *
78854119 CTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
65 CTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * ** *
78854156 CACATGTTTAGTACTAAGTGCAAGCTACTACGTGTAC-CGGATTGATAGGTTGCATGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAGATATGTCACGTGTGTAGTAC
* * * * *
78854220 TAAGTGCAGGCTACTATGTGTACCCG-TTAACTTCGAT
66 TAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT
* * * * * *
78854257 CACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTA-TCAGATGGATAAGTCACATATGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAGATATGTCACGTGTGTAGTAC
* * *
78854321 TAAGTGCAGGCTACTACATGTACCAGATTGATAAGT
66 TAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
78854357 CGCATGTGTAGTACTAAGTGCAGGCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
78854389 CATACCAGAG
Statistics
Matches: 276, Mismatches: 51, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
99 1 0.00
100 70 0.25
101 166 0.60
102 38 0.14
103 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (101 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAGATATGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:78854233 original size:151 final size:151
Alignment explanation
Indices: 78853957--78854394 Score: 615
Period size: 151 Copynumber: 2.9 Consensus size: 151
78853947 TGAGAACACA
* * * * * * *
78853957 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGCCACGTGTTTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA-TG-GTTAGGTCACATGTTTAGTACTAA
* *
78854022 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCCCATGTGTAGTACTAAGTGCAGGCTACTATG
64 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
* ** *
78854087 CGTACTCGATAGTTTTGATCACG
129 CGTACCCGATAACTTCGATCACG
*
78854110 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTTTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACATGTTTAGTACTAAGT
* * * *
78854175 GCAAGCTACTACGTGTACCGGATTGATAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGTG
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
*
78854240 TACCCGTTAACTTCGATCACG
131 TACCCGATAACTTCGATCACG
* * * * *
78854261 TGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGATAAGTCACATATGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACATGTTTAGTACTAAGT
* * *
78854326 GCAGGCTACTACATGTACCAGATTGATAAGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCA
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
78854391 TACC
131 TACC
78854395 AGAGAGCTTC
Statistics
Matches: 253, Mismatches: 32, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
151 219 0.87
152 1 0.00
153 33 0.13
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACATGTTTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACCCGATAACTTCGATCACG
Found at i:78858654 original size:41 final size:41
Alignment explanation
Indices: 78858582--78858663 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
78858572 CCACAAGAAA
* * * *
78858582 TTGTGGAATCTATTGTTGTTTAATCTTTGGTTCAATGATCT
1 TTGTGGAATCTATTGTTATTCAACCTCTGGTTCAATGATCT
* *
78858623 TTGTGGAATCTATTGTTATTCAACCTCTGGTTTAGTGATCT
1 TTGTGGAATCTATTGTTATTCAACCTCTGGTTCAATGATCT
78858664 GTTGCTGTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.20, C:0.12, G:0.20, T:0.49
Consensus pattern (41 bp):
TTGTGGAATCTATTGTTATTCAACCTCTGGTTCAATGATCT
Found at i:78865092 original size:81 final size:81
Alignment explanation
Indices: 78864905--78865110 Score: 270
Period size: 81 Copynumber: 2.5 Consensus size: 81
78864895 TTAGTTTACC
** * *
78864905 AAATTACCAAAATACCAT-TGGTTTACAAAATTACTAAAATACCCCTGGTTTGTAAGATTACTAA
1 AAATTACCAAAATACC-TCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAA
* *
78864969 AATACACTTTGTTTATA
65 AATACACCTGGTTTATA
* *
78864986 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
* *
78865051 ATACCCCTGGTTTGTA
66 ATACACCTGGTTTATA
* * * *
78865067 AAATTATCAAAATACCTCTGATTTGTGAAATTACTGAAATACCC
1 AAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCC
78865111 TCGACCTGTA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
81 108 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
ATACACCTGGTTTATA
Found at i:78865163 original size:27 final size:27
Alignment explanation
Indices: 78864905--78865182 Score: 238
Period size: 27 Copynumber: 10.3 Consensus size: 27
78864895 TTAGTTTACC
** * **
78864905 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
78864932 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * ** *
78864959 AGATTACTAAAATACACTTTG-TTTATA
1 AAATTACCAAAATAC-CCCTGATTTGTA
*
78864986 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
78865013 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
78865040 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
78865067 AAATTATCAAAATACCTCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** **
78865094 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *** *
78865121 AAACTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
78865148 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
78865175 GAATTACC
1 AAATTACC
78865183 GTTTTACCCT
Statistics
Matches: 211, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.03
27 198 0.94
28 7 0.03
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:78865190 original size:27 final size:27
Alignment explanation
Indices: 78865163--78865434 Score: 294
Period size: 27 Copynumber: 10.1 Consensus size: 27
78865153 ACCAAAGTAC
*
78865163 CCCT-GATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
78865189 CCCTCAATTTACAGAATTATTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
78865216 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
78865243 CCCTCAATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** *
78865270 CCCTCGATTTTTAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * **
78865297 CCCTTGATTAACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * **
78865324 CCCTCAATTTACAAAATTATTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
78865351 CCCTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
78865378 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
78865405 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
78865432 CCC
1 CCC
78865435 CTAGGGTGTT
Statistics
Matches: 203, Mismatches: 42, Indels: 1
0.83 0.17 0.00
Matches are distributed among these distances:
26 4 0.02
27 199 0.98
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:78865207 original size:54 final size:54
Alignment explanation
Indices: 78865163--78865434 Score: 366
Period size: 54 Copynumber: 5.1 Consensus size: 54
78865153 ACCAAAGTAC
* * * *
78865163 CCCT-GATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTATTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTA
* *
78865216 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTA
* * * * *
78865270 CCCTCGATTTTTAGAATTATCGTTTTACCCTTGATTAACAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTA
* * * **
78865324 CCCTCAATTTACAAAATTATTGTTTTACCCTCGATTTACAAAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTA
* * *
78865378 CCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTA
78865432 CCC
1 CCC
78865435 CTAGGGTGTT
Statistics
Matches: 195, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
53 4 0.02
54 191 0.98
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTA
Found at i:78865715 original size:27 final size:26
Alignment explanation
Indices: 78865671--78865722 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
78865661 CTCGCTACAA
*
78865671 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
78865698 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
78865723 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:78865760 original size:67 final size:68
Alignment explanation
Indices: 78865652--78865791 Score: 201
Period size: 67 Copynumber: 2.1 Consensus size: 68
78865642 GAGGAAGCGT
* * *
78865652 TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCAC-ATATATCTGTTCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCACAATATATCTGTTCTGGTGACCTAGCCACA
78865716 ATA
66 ATA
* * * *
78865719 TCTGGCAGCCTCGTTGCAATCTGGTGGCTTCGCCACATATATATCTGTTCTGGTGGCCTAGCCAC
1 TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCACA-ATATATCTGTTCTGGTGACCTAGCCAC
78865784 AATA
65 AATA
78865788 TCTG
1 TCTG
78865792 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
67 33 0.52
69 31 0.48
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.31
Consensus pattern (68 bp):
TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCACAATATATCTGTTCTGGTGACCTAGCCACA
ATA
Found at i:78865782 original size:29 final size:27
Alignment explanation
Indices: 78865759--78865818 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
78865749 CGCCACATAT
78865759 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
* * * *
78865785 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
78865812 ATATCTG
1 ATATCTG
78865819 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGGCCTAGCCACA
Found at i:78865972 original size:31 final size:31
Alignment explanation
Indices: 78865937--78866015 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
78865927 TTGCATTCAC
*
78865937 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
*
78865968 ATTCTGATTTTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
*
78865999 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
78866016 AGTTCTGATA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTG
Found at i:78865976 original size:6 final size:6
Alignment explanation
Indices: 78865937--78866024 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
78865927 TTGCATTCAC
* * *
78865937 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
78865986 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
78866025 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:78870222 original size:23 final size:24
Alignment explanation
Indices: 78870196--78870248 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
78870186 AGCCCAGATA
* *
78870196 AGCTTACCGATA-GGCTCTTTATG
1 AGCTTACCGAAATGGCTCTGTATG
* *
78870219 AGCTTCCCGAAATGGCTCTGTGTG
1 AGCTTACCGAAATGGCTCTGTATG
78870243 AGCTTA
1 AGCTTA
78870249 TCGCTACAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.32
Consensus pattern (24 bp):
AGCTTACCGAAATGGCTCTGTATG
Found at i:78879374 original size:40 final size:40
Alignment explanation
Indices: 78879316--78879573 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
78879306 AAGCCAAGTA
* * * * *
78879316 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
78879355 CCTTCAGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78879395 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
78879435 CCTTTGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78879475 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
78879515 CCTTCGGGACTTAGCCCGGA-ACCAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
78879555 CCTTCGGGACATAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78879574 TTATCATCCA
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.06
40 185 0.94
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78887591 original size:39 final size:40
Alignment explanation
Indices: 78887455--78887670 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 40
78887445 AAGCGAAGTA
* * * * *
78887455 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
78887494 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
78887534 CCTTCGGGACTTAGCCCGGATATAGTAACTCAAAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78887574 CC-TCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
78887613 CCTTCGGGACTTAGCCCGGA-ACCAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
78887653 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78887671 TTATCATCCA
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 62 0.40
40 93 0.60
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78887652 original size:79 final size:80
Alignment explanation
Indices: 78887490--78887670 Score: 253
Period size: 79 Copynumber: 2.3 Consensus size: 80
78887480 TACTTGCTCG
* *
78887490 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
78887555 ATAGTAACTCAAAAA
66 ACAGTAACTCAAAAA
78887570 AATGCC-TCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
* ***
78887633 ACCAGTCACT-AGCGCA
66 A-CAGTAACTCA-AAAA
78887649 AATGCCTTC-GGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
78887671 TTATCATCCA
Statistics
Matches: 91, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
78 2 0.02
79 81 0.89
80 8 0.09
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ACAGTAACTCAAAAA
Found at i:78906059 original size:20 final size:20
Alignment explanation
Indices: 78906034--78906071 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
78906024 GAATAAATCA
78906034 AAAACTTTAG-AAAATTTTAC
1 AAAAC-TTAGAAAAATTTTAC
78906054 AAAACTTAGAAAAATTTT
1 AAAACTTAGAAAAATTTT
78906072 CATAAAACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
AAAACTTAGAAAAATTTTAC
Found at i:78918571 original size:48 final size:48
Alignment explanation
Indices: 78918511--78918826 Score: 207
Period size: 48 Copynumber: 6.6 Consensus size: 48
78918501 TATGTGTGCT
78918511 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCC
* * * * ** *
78918559 AATGTAAGACCATGTTTGGAACATGACATCGGAAATGTAA-A-GAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA--TAATATGAGAGCC
* * * *
78918607 AGTGTAAGACCATGTATGGGACATGGCATC-GACATTGATATATG-CA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-T-A-ATATGAGAGCC
* * * * * *
78918655 AGTGTAAGACCATGTTTGGAACATGGCATCGACCA-CATCATAAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAAT-ATGAGAGCC
* * * * *** *
78918703 AGTGTAAAACCAT-TCTGGGACATGGCATCGACCTTGAGGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCC
* * * * * * *
78918750 AGTGTAAGGCCATGTCTAGGACATGGTATCAGCC-TCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-AATATGAGAGCC
* *
78918798 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
78918827 TAGTAATTCA
Statistics
Matches: 204, Mismatches: 51, Indels: 26
0.73 0.18 0.09
Matches are distributed among these distances:
45 2 0.01
46 3 0.01
47 39 0.19
48 151 0.74
49 5 0.02
50 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAATATGAGAGCC
Found at i:78918706 original size:96 final size:97
Alignment explanation
Indices: 78918511--78918739 Score: 251
Period size: 96 Copynumber: 2.4 Consensus size: 97
78918501 TATGTGTGCT
* *
78918511 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-T-AATATGAGAGCCAATGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACATTGAATATGACAGCCAATGTAAGACCATGT
* *
78918574 TTGGAACATGACATCGGAAATGTAAAGAGAGTC
65 TTGGAACATGACATCGGAAATATAAAGAGAGCC
* * *
78918607 AGTGTAAGACCATGTATGGGACATGGCATCGACATTGATATATG-CA-CTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA-ATATGACAGCCAATGTAAGACCATGT
*
78918670 TTGGAACATGGCATC-GACCACATCAT-AA-A-AGCC
65 TTGGAACATGACATCGGA--A-AT-ATAAAGAGAGCC
* *
78918703 AGTGTAAAACCAT-TCTGGGACATGGCATCGACCTTGA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA
78918740 GGCGAGAGCT
Statistics
Matches: 115, Mismatches: 11, Indels: 15
0.82 0.08 0.11
Matches are distributed among these distances:
95 27 0.23
96 74 0.64
97 4 0.03
98 9 0.08
99 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAATATGACAGCCAATGTAAGACCATGTT
TGGAACATGACATCGGAAATATAAAGAGAGCC
Found at i:78924090 original size:38 final size:38
Alignment explanation
Indices: 78924039--78924114 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
78924029 TATATTTTTG
78924039 AGATTGTGAGACTTCATAGAGTACCTTTGTCAATTATT
1 AGATTGTGAGACTTCATAGAGTACCTTTGTCAATTATT
*
78924077 AGATTGTGAGACTTCATGGAGTACCTTTGTCAATTATT
1 AGATTGTGAGACTTCATAGAGTACCTTTGTCAATTATT
78924115 TCGGATGGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (38 bp):
AGATTGTGAGACTTCATAGAGTACCTTTGTCAATTATT
Found at i:78924654 original size:45 final size:45
Alignment explanation
Indices: 78924590--78924680 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
78924580 AAAAAAAGTC
* * *
78924590 CTTAGATTTGGTAAGAAAGGGAAATTAAGTCCATGTTTTGTTGGA
1 CTTAGATTTGGTAAGAAAGGAAAATTAAGTCAACGTTTTGTTGGA
78924635 CTTAGATTTGGTAAGAAAGGAAAATTAAGTCAACGTTTTGTTGGA
1 CTTAGATTTGGTAAGAAAGGAAAATTAAGTCAACGTTTTGTTGGA
78924680 C
1 C
78924681 CTTATGAGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (45 bp):
CTTAGATTTGGTAAGAAAGGAAAATTAAGTCAACGTTTTGTTGGA
Found at i:78926311 original size:48 final size:48
Alignment explanation
Indices: 78926247--78926351 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
78926237 CCATCTCTGG
*
78926247 ACATGGCATCGGCCACAAT-ATGAGAGCCAGCGTAAGACAATGTTTGGA
1 ACATGGCATCGACCAC-ATCATGAGAGCCAGCGTAAGACAATGTTTGGA
* *
78926295 ACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACCATGTTTGGA
1 ACATGGCATCGACCACATCATGAGAGCCAGCGTAAGACAATGTTTGGA
78926343 ACATGGCAT
1 ACATGGCAT
78926352 TAGCAATTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
47 2 0.04
48 51 0.96
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.20
Consensus pattern (48 bp):
ACATGGCATCGACCACATCATGAGAGCCAGCGTAAGACAATGTTTGGA
Found at i:78929842 original size:20 final size:20
Alignment explanation
Indices: 78929805--78929841 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
78929795 GACTAAACCA
*
78929805 AAAACTTTAGAAAATTTTAC
1 AAAACTTTAAAAAATTTTAC
78929825 AAAAC-TTAAAAAATTTT
1 AAAACTTTAAAAAATTTT
78929842 TCATTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (20 bp):
AAAACTTTAAAAAATTTTAC
Found at i:78932660 original size:42 final size:42
Alignment explanation
Indices: 78932613--78932807 Score: 140
Period size: 43 Copynumber: 4.6 Consensus size: 42
78932603 TAAGATGCCA
* *
78932613 ATGCCATATCCTAGATATGGTCTTACATG-GGATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAGG-TCACATATCG
* * * *
78932655 ATGCCAATAGCCCAGCTATGGTCTTACACGATGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAGGTCACATATCG
* * * * * * *
78932698 ATGCCATGTCCCAGATATGGTCTTATACAAAGTCTCATTTTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAGGTCACA-TATCG
* * * ** * ** * **
78932741 AAGCCATGTCTCAGACGTGGTCTTAAACGAAATCGCATGCCG
1 ATGCCATATCCCAGATATGGTCTTACACGAGGTCACATATCG
78932783 ATGCCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
78932808 TATGGAATCT
Statistics
Matches: 120, Mismatches: 30, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
42 53 0.44
43 66 0.55
44 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAGGTCACATATCG
Found at i:78936250 original size:43 final size:43
Alignment explanation
Indices: 78936189--78936291 Score: 170
Period size: 43 Copynumber: 2.4 Consensus size: 43
78936179 TTTTATCCTA
78936189 GAAAGAAGAATTTAAAAAGAGGAGAAGATAATCTTAGGTTGTC
1 GAAAGAAGAATTTAAAAAGAGGAGAAGATAATCTTAGGTTGTC
* * *
78936232 GAAAGAAGAATTTAAAAAGAGGAGAGGATAATCTTTGGTTGTT
1 GAAAGAAGAATTTAAAAAGAGGAGAAGATAATCTTAGGTTGTC
*
78936275 GAAAAAAGAATTTAAAA
1 GAAAGAAGAATTTAAAA
78936292 TGATGAAGAG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.49, C:0.03, G:0.24, T:0.24
Consensus pattern (43 bp):
GAAAGAAGAATTTAAAAAGAGGAGAAGATAATCTTAGGTTGTC
Found at i:78938336 original size:27 final size:27
Alignment explanation
Indices: 78938305--78938482 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
78938295 TAAATTGTAC
78938305 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78938332 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78938358 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78938386 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78938414 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
78938441 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78938468 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78938483 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78938473 original size:82 final size:81
Alignment explanation
Indices: 78938302--78938482 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
78938292 GATTAAATTG
* *
78938302 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78938367 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78938383 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
78938447 AAGTGTGC-AAGTTGATTA
64 AAGTGTGCGAA-TTGACCA
* *
78938465 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78938483 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78946522 original size:27 final size:27
Alignment explanation
Indices: 78946491--78946668 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78946481 TAAATTGTAC
78946491 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78946518 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78946544 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78946572 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78946600 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78946627 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78946654 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78946669 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78946605 original size:82 final size:81
Alignment explanation
Indices: 78946492--78946647 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78946482 AAATTGTACA
* *
78946492 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
78946556 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78946573 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
78946638 TGCGAGTTGA
65 TGCGAATTGA
78946648 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78946659 original size:82 final size:81
Alignment explanation
Indices: 78946488--78946668 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
78946478 GATTAAATTG
* *
78946488 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78946553 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78946569 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78946633 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78946651 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78946669 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78951412 original size:38 final size:37
Alignment explanation
Indices: 78951364--78951446 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
78951354 CACTTGGTGT
* *
78951364 GTCACATTTGCTTCCG-ATAGATTCAATGAGGCGTTGGTC
1 GTCAC-TTTGCTTCCGCATAG--CCAATGAGACGTTGGTC
* *
78951403 GTCACTTTGCTTCGGCTTAGCCAATGAGACGTTGGTC
1 GTCACTTTGCTTCCGCATAGCCAATGAGACGTTGGTC
78951440 GTCACTT
1 GTCACTT
78951447 ATTCACTTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
37 22 0.56
38 9 0.23
39 8 0.21
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (37 bp):
GTCACTTTGCTTCCGCATAGCCAATGAGACGTTGGTC
Found at i:78960619 original size:3 final size:3
Alignment explanation
Indices: 78960611--78960648 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
78960601 AGATATTTAC
78960611 TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA TCTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
78960649 ATTGAGATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.12
3 25 0.78
4 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:78960806 original size:17 final size:17
Alignment explanation
Indices: 78960781--78960815 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
78960771 TGAAAGAAAT
* *
78960781 AAAATAAAACAAAAAGA
1 AAAAGAAAAAAAAAAGA
78960798 AAAAGAAAAAAAAAAGA
1 AAAAGAAAAAAAAAAGA
78960815 A
1 A
78960816 GGTGCAGTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.86, C:0.03, G:0.09, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAAAAAAAGA
Found at i:78974460 original size:24 final size:24
Alignment explanation
Indices: 78974432--78974526 Score: 109
Period size: 24 Copynumber: 3.9 Consensus size: 24
78974422 AGCTTATTGC
* *
78974432 TCAGCTAAATAGAGCCTACCGTTT
1 TCAGCTCAATAGAGCTTACCGTTT
*
78974456 TCAGCTCAATAGAGCTTACCATTT
1 TCAGCTCAATAGAGCTTACCGTTT
* *
78974480 TCTGCTCAATAGAGCTTACTGTTT
1 TCAGCTCAATAGAGCTTACCGTTT
**
78974504 ATCAGCTCAGGAGGAGCTTACCG
1 -TCAGCTCAATA-GAGCTTACCG
78974527 ACCAAGACTC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
24 42 0.71
25 8 0.14
26 9 0.15
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (24 bp):
TCAGCTCAATAGAGCTTACCGTTT
Found at i:78980552 original size:49 final size:47
Alignment explanation
Indices: 78980394--78980742 Score: 536
Period size: 47 Copynumber: 7.3 Consensus size: 47
78980384 TCAGAGACAA
78980394 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * * *
78980441 ACTTTCACATTCATCATATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
78980488 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
78980537 ACTTTCGCATTCATCACATTGGCCATTCGGCCTTATCAGATATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATC--ACATATATAC
*
78980586 ACTTTTACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
78980635 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
78980682 ACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
78980729 ACTTTCACATTCAT
1 ACTTTCACATTCAT
78980743 TCAAATATAC
Statistics
Matches: 279, Mismatches: 17, Indels: 12
0.91 0.06 0.04
Matches are distributed among these distances:
47 147 0.53
49 131 0.47
51 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.35
Consensus pattern (47 bp):
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
Found at i:78984652 original size:40 final size:40
Alignment explanation
Indices: 78984612--78985112 Score: 778
Period size: 40 Copynumber: 12.7 Consensus size: 40
78984602 TGATTACTCT
* ** * * *
78984612 TCGGGACCTAGCTAGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* ** ** *
78984652 TTGGGGTTTAGCATGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
78984692 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
78984732 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
78984772 TCGGGACTTAGCCCGGATGTACCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
78984812 TCGGGACTTAGCCCGGATGTATCACTAGCACG-ATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
78984851 TCGGGACTTAGCCCGGATGTATCACTAGCACGAATGCTTC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
78984891 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCT-C
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
78984930 TC-GGACTTAGCCCAGATA-CTCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
78984968 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
78985008 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
78985048 TCGGGACTTAGCCCGGATATA-CACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
78985087 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
78985113 CTCAATTCTC
Statistics
Matches: 429, Mismatches: 27, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
37 17 0.04
38 18 0.04
39 96 0.22
40 298 0.69
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:78984869 original size:23 final size:22
Alignment explanation
Indices: 78984725--78984908 Score: 61
Period size: 17 Copynumber: 9.1 Consensus size: 22
78984715 ACTAGCACGA
78984725 ATGCTCCTCGGGACTTAGCCCGG
1 ATGCT-CTCGGGACTTAGCCCGG
* * * *
78984748 AT-ATATC---AC-TAGCACGA
1 ATGCTCTCGGGACTTAGCCCGG
78984765 ATGCTCCTCGGGACTTAGCCCGG
1 ATGCT-CTCGGGACTTAGCCCGG
* *
78984788 ATG-TAC-C---AC-TAGCACGA
1 ATGCT-CTCGGGACTTAGCCCGG
78984805 ATGCTCCTCGGGACTTAGCCCGG
1 ATGCT-CTCGGGACTTAGCCCGG
* *
78984828 ATG-TATC---AC-TAGCAC-G
1 ATGCTCTCGGGACTTAGCCCGG
78984844 ATGCTCCTCGGGACTTAGCCCGG
1 ATGCT-CTCGGGACTTAGCCCGG
* * *
78984867 ATG-TATC---AC-TAGCACGA
1 ATGCTCTCGGGACTTAGCCCGG
78984884 ATGCTTCTCGGGACTTAGCCCGG
1 ATGC-TCTCGGGACTTAGCCCGG
78984907 AT
1 AT
78984909 ATATCACTAG
Statistics
Matches: 112, Mismatches: 24, Indels: 50
0.60 0.13 0.27
Matches are distributed among these distances:
16 4 0.04
17 32 0.29
18 13 0.12
19 6 0.05
21 9 0.08
22 16 0.14
23 32 0.29
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (22 bp):
ATGCTCTCGGGACTTAGCCCGG
Found at i:78985036 original size:236 final size:239
Alignment explanation
Indices: 78984612--78985112 Score: 814
Period size: 236 Copynumber: 2.1 Consensus size: 239
78984602 TGATTACTCT
* ** * * * ** **
78984612 TCGGGACCTAGCTAGGATATAACACCAGCACGAATGC-TCTTTGGGGTTTAGCATGGATATATCA
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTTC-TCGGGACTTAGCCCGGATATATCA
*
78984676 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTT
65 CTAGCACGAATGCTCTTCGGAACTTAGCCCAGATACATCACTAGCACGAATGCTCCTCGGGACTT
*
78984741 AGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATGTACCACTAGCACGAA
130 AGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATACCACTAGCACGAA
*
78984806 TGCTCCTCGGGACTTAGCCCGGATGTATCACTAGCACG-ATGCTCC
195 TGCTCCTCGGGACTTAGCCCGGATATA-CACTAGCACGAATGCTCC
*
78984851 TCGGGACTTAGCCCGGATGTATCACTAGCACGAATGCTTCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTTCTCGGGACTTAGCCCGGATATATCAC
78984916 TAGCACGAATGCTC-TCGG-ACTTAGCCCAGATAC-TCACTAGCACGAATGCTCCTCGGGACTTA
66 TAGCACGAATGCTCTTCGGAACTTAGCCCAGATACATCACTAGCACGAATGCTCCTCGGGACTTA
*
78984978 GCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
131 GCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATACCACTAGCACGAAT
78985043 GCTCCTCGGGACTTAGCCCGGATATACACTAGCACGAATGCTCC
196 GCTCCTCGGGACTTAGCCCGGATATACACTAGCACGAATGCTCC
78985087 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
78985113 CTCAATTCTC
Statistics
Matches: 244, Mismatches: 16, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
235 10 0.04
236 149 0.61
237 14 0.06
238 4 0.02
239 65 0.27
240 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (239 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTTCTCGGGACTTAGCCCGGATATATCAC
TAGCACGAATGCTCTTCGGAACTTAGCCCAGATACATCACTAGCACGAATGCTCCTCGGGACTTA
GCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATACCACTAGCACGAAT
GCTCCTCGGGACTTAGCCCGGATATACACTAGCACGAATGCTCC
Found at i:78988572 original size:49 final size:47
Alignment explanation
Indices: 78988420--78988896 Score: 713
Period size: 47 Copynumber: 10.0 Consensus size: 47
78988410 ATGATAGTAA
*
78988420 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
78988467 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
78988514 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
78988563 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
78988610 GACCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
78988659 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* *
78988708 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
78988755 GGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
78988802 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* * * * *
78988851 GG-CTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 GGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
78988897 AGTCCCGAAG
Statistics
Matches: 399, Mismatches: 24, Indels: 14
0.91 0.05 0.03
Matches are distributed among these distances:
47 222 0.56
48 2 0.01
49 175 0.44
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
Found at i:78988591 original size:96 final size:96
Alignment explanation
Indices: 78988417--78988898 Score: 769
Period size: 96 Copynumber: 5.0 Consensus size: 96
78988407 GAAATGATAG
*
78988417 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
78988480 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
78988511 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
78988576 ATGTGATGAATGTGAAAGTGTATATATGAGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
78988607 T-AGGACCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCC
1 TAAGG-CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCC
78988671 GATGTGATGAATGTGAAAGTGTATATATATGTGA
65 GATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
78988705 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
78988768 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
78988799 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGG-CTGAGTGGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCT-AATGGCC
* * * *
78988863 AACGTGATGGATGTGAAAGTGTATAAATGTGA
65 GATGTGATGAATGTGAAAGTGTATATATGTGA
78988895 TAAG
1 TAAG
78988899 TCCCGAAGGG
Statistics
Matches: 361, Mismatches: 18, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
94 82 0.23
95 5 0.01
96 230 0.64
98 41 0.11
99 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:78989073 original size:37 final size:37
Alignment explanation
Indices: 78989017--78989095 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
78989007 CCGAGCTCTA
* * *
78989017 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78989054 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78989091 AAGAC
1 AAGAC
78989096 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78991007 original size:43 final size:43
Alignment explanation
Indices: 78990959--78991116 Score: 208
Period size: 43 Copynumber: 3.4 Consensus size: 43
78990949 TTGGTTTTCA
78990959 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
78991002 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAT-A------A-----GTGTTCACGGTTGTGAGATTG
78991057 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
78991100 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
78991117 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 24
0.81 0.00 0.19
Matches are distributed among these distances:
43 58 0.56
44 1 0.01
48 1 0.01
50 1 0.01
54 1 0.01
55 41 0.40
ACGTcount: A:0.22, C:0.15, G:0.35, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:78991041 original size:12 final size:12
Alignment explanation
Indices: 78991024--78991050 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
78991014 CGGGCAATAA
78991024 GTGTTCACGGTT
1 GTGTTCACGGTT
78991036 GTGTTCACGGTT
1 GTGTTCACGGTT
78991048 GTG
1 GTG
78991051 AGATTGGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.37, T:0.41
Consensus pattern (12 bp):
GTGTTCACGGTT
Found at i:78991050 original size:55 final size:55
Alignment explanation
Indices: 78990981--78991093 Score: 226
Period size: 55 Copynumber: 2.1 Consensus size: 55
78990971 CGGGCAATAA
78990981 GTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTT
1 GTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTT
78991036 GTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTT
1 GTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTT
78991091 GTG
1 GTG
78991094 AGATTGGCAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.19, C:0.14, G:0.35, T:0.31
Consensus pattern (55 bp):
GTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTT
Found at i:78991133 original size:29 final size:29
Alignment explanation
Indices: 78991098--78991171 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
78991088 GTTGTGAGAT
* *
78991098 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
78991127 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
78991156 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78991172 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:78991530 original size:40 final size:40
Alignment explanation
Indices: 78991482--78991584 Score: 143
Period size: 40 Copynumber: 2.6 Consensus size: 40
78991472 TCGAATGATG
*
78991482 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* * *
78991522 TCCGGACTAAGTTTCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* * *
78991562 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGACTAAGTTCCGAAGAGCA
78991585 ATCATGTTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:78995516 original size:49 final size:47
Alignment explanation
Indices: 78995364--78995840 Score: 695
Period size: 47 Copynumber: 10.0 Consensus size: 47
78995354 ATGATAGTAA
*
78995364 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
78995411 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
78995458 GGCCTAATGGCCGATGTGATGAATTTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* *
78995507 GGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
78995554 GACCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
78995603 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* *
78995652 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
78995699 GGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
78995746 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* * * * *
78995795 GG-CTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 GGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
78995841 AGTCCCGAAG
Statistics
Matches: 395, Mismatches: 28, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
47 220 0.56
48 2 0.01
49 173 0.44
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
Found at i:78995535 original size:96 final size:96
Alignment explanation
Indices: 78995361--78995842 Score: 751
Period size: 96 Copynumber: 5.0 Consensus size: 96
78995351 GAAATGATAG
*
78995361 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
78995424 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* *
78995455 TAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTGTATATATATGTGATAGGGCTTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
78995520 ATGTGATGAATGTGAAAGTGTATATATGAGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
78995551 T-AGGACCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCC
1 TAAGG-CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCC
78995615 GATGTGATGAATGTGAAAGTGTATATATATGTGA
65 GATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
78995649 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
78995712 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
78995743 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGG-CTGAGTGGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCT-AATGGCC
* * * *
78995807 AACGTGATGGATGTGAAAGTGTATAAATGTGA
65 GATGTGATGAATGTGAAAGTGTATATATGTGA
78995839 TAAG
1 TAAG
78995843 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 22, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
94 81 0.23
95 5 0.01
96 227 0.64
98 41 0.11
99 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:78996017 original size:37 final size:37
Alignment explanation
Indices: 78995961--78996039 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
78995951 CCGAGCTCTA
* * *
78995961 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78995998 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78996035 AAGAC
1 AAGAC
78996040 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78998262 original size:47 final size:47
Alignment explanation
Indices: 78998184--78998689 Score: 778
Period size: 47 Copynumber: 10.6 Consensus size: 47
78998174 CCCTTCGGGA
* * * * * *
78998184 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78998231 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78998278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78998325 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78998372 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78998421 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78998468 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78998515 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78998564 CTTATCACATATATATACACTTTCAGATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78998613 CTTATCACATATATACACTTTCACATTCATCATATCGGTCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78998660 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
78998690 TCAAATATAC
Statistics
Matches: 430, Mismatches: 25, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 290 0.67
49 140 0.33
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78998413 original size:96 final size:94
Alignment explanation
Indices: 78998184--78998689 Score: 805
Period size: 96 Copynumber: 5.3 Consensus size: 94
78998174 CCCTTCGGGA
* * * * * * *
78998184 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
78998249 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
78998278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
78998343 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
78998372 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
* *
78998437 ACTTTCACATTCATCATATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
78998468 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATATAC
* *
78998533 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
78998564 CTTATCACATATATATACACTTTCAGATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
* * *
78998629 ACTTTCACATTCATCATATCGGTCATTAGGA
64 ACTTTCACATTCATCACATCGGCCATTAGGC
78998660 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
78998690 TCAAATATAC
Statistics
Matches: 383, Mismatches: 23, Indels: 12
0.92 0.06 0.03
Matches are distributed among these distances:
94 162 0.42
96 176 0.46
98 45 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:78998440 original size:143 final size:141
Alignment explanation
Indices: 78998184--78998689 Score: 787
Period size: 143 Copynumber: 3.5 Consensus size: 141
78998174 CCCTTCGGGA
* * * * * * * *
78998184 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
78998249 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
78998314 GGCCATTAGGC
131 GGCCATTAGGC
78998325 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
78998390 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCATA
64 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
78998455 TCGGCTATTAGGC
129 TCGGCCATTAGGC
*
78998468 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
78998533 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCAGATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
78998598 CATTGGCCATTCGGC
127 CATCGGCCATTAGGC
* * *
78998613 CTTATCACATATATACACTTTCACATTCATCATATCGGTCATTAGGACTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
78998678 TTTCACATTCAT
66 TTTCACATTCAT
78998690 TCAAATATAC
Statistics
Matches: 339, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
141 47 0.14
143 207 0.61
145 85 0.25
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:79003277 original size:10 final size:10
Alignment explanation
Indices: 79003262--79003310 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
79003252 CTCACTTGAA
79003262 CTCGTTTCAG
1 CTCGTTTCAG
*
79003272 CTCGTTTGAG
1 CTCGTTTCAG
79003282 CTCGACTTT-AG
1 CTCG--TTTCAG
79003293 CTCGTTTCAG
1 CTCGTTTCAG
*
79003303 CTCATTTC
1 CTCGTTTC
79003311 TTTTCTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 3 0.09
10 22 0.65
11 6 0.18
12 3 0.09
ACGTcount: A:0.12, C:0.29, G:0.18, T:0.41
Consensus pattern (10 bp):
CTCGTTTCAG
Found at i:79005158 original size:23 final size:22
Alignment explanation
Indices: 79005128--79005251 Score: 74
Period size: 23 Copynumber: 5.3 Consensus size: 22
79005118 GGACTCACCA
79005128 CAGCTCATAAGAGCTTACTGTTT
1 CAGCTCA-AAGAGCTTACTGTTT
** **
79005151 CAGCTCATTGGAGCTTACCAATTT
1 CAGCTCA-AAGAGCTTA-CTGTTT
* *
79005175 -AGCTCAAAAGAGCTTATTG-CT
1 CAGCTC-AAAGAGCTTACTGTTT
79005196 CAGCTCAACAGAGCTTACCAT-TTT
1 CAGCTCAA-AGAGCTTA-C-TGTTT
*
79005220 TAGCTCAATAGAGCTTACTGTTTAT
1 CAGCTCAA-AGAGCTTACTG-TT-T
79005245 CAGCTCA
1 CAGCTCA
79005252 GGAGGAGCTT
Statistics
Matches: 76, Mismatches: 15, Indels: 18
0.70 0.14 0.17
Matches are distributed among these distances:
21 3 0.04
22 14 0.18
23 28 0.37
24 24 0.32
25 7 0.09
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (22 bp):
CAGCTCAAAGAGCTTACTGTTT
Found at i:79005212 original size:45 final size:47
Alignment explanation
Indices: 79005129--79005240 Score: 138
Period size: 46 Copynumber: 2.4 Consensus size: 47
79005119 GACTCACCAC
* * ***
79005129 AGCTCATAAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCA-ATTT
1 AGCTCAAAAGAGCTTACTGTCTCAGCTCAACAGAGCTTACCATATTT
* *
79005175 AGCTCAAAAGAGCTTATTG-CTCAGCTCAACAGAGCTTACCATTTTT
1 AGCTCAAAAGAGCTTACTGTCTCAGCTCAACAGAGCTTACCATATTT
*
79005221 AGCTCAATAGAGCTTACTGT
1 AGCTCAAAAGAGCTTACTGT
79005241 TTATCAGCTC
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
45 18 0.33
46 37 0.67
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (47 bp):
AGCTCAAAAGAGCTTACTGTCTCAGCTCAACAGAGCTTACCATATTT
Found at i:79008398 original size:26 final size:26
Alignment explanation
Indices: 79008369--79008418 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
79008359 ATATTTTTAA
*
79008369 TATTTATATTATAAT-AATTATATATT
1 TATTTATA-TAAAATAAATTATATATT
*
79008395 TATTTTTATAAAATAAATTATATA
1 TATTTATATAAAATAAATTATATA
79008419 AATGTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TATTTATATAAAATAAATTATATATT
Done.