Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 240 of 356
Found at i:79008955 original size:3 final size:3
Alignment explanation
Indices: 79008947--79008991 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
79008937 TTTTTAAGTG
*
79008947 CCT CCT CCT CTT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
79008992 TCACTTAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (3 bp):
CCT
Found at i:79011175 original size:14 final size:15
Alignment explanation
Indices: 79011156--79011193 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
79011146 TTAAAGTTTT
79011156 TTTAAAAAAT-GGTA
1 TTTAAAAAATCGGTA
* *
79011170 TTTAAAATATCGTTA
1 TTTAAAAAATCGGTA
79011185 TTTAAAAAA
1 TTTAAAAAA
79011194 AATTTAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.39
Consensus pattern (15 bp):
TTTAAAAAATCGGTA
Found at i:79018361 original size:27 final size:27
Alignment explanation
Indices: 79018331--79018508 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
79018321 ATATTGAGCC
* *
79018331 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
79018358 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
79018385 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
79018413 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
79018440 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
79018467 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
79018494 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
79018509 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:79018470 original size:82 final size:81
Alignment explanation
Indices: 79018352--79018507 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
79018342 TGCTATATAA
* * * *
79018352 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
79018417 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
79018434 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
79018498 CCCTTAGTGC
65 CACTTAGTGC
79018508 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:79021471 original size:47 final size:47
Alignment explanation
Indices: 79021401--79021733 Score: 508
Period size: 47 Copynumber: 7.1 Consensus size: 47
79021391 GAAATGATAG
79021401 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
79021448 TAAGGCCTAATAGCCGATTTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
79021497 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79021542 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79021589 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79021636 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * * *
79021683 CGGGGCCGAGTGGCCAACGTTATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79021730 TAAG
1 TAAG
79021734 TCCCAAAGGG
Statistics
Matches: 264, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
45 44 0.17
47 174 0.66
49 46 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:79021908 original size:37 final size:37
Alignment explanation
Indices: 79021852--79021930 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
79021842 TCGAGCTCTA
* *
79021852 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
79021889 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
79021926 AAGAC
1 AAGAC
79021931 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:79023783 original size:27 final size:27
Alignment explanation
Indices: 79023753--79023903 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
79023743 ATATTGAGTC
* *
79023753 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
79023780 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
79023807 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
79023835 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
79023862 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
79023889 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79023904 GTACAATTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
27 83 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:79023845 original size:55 final size:54
Alignment explanation
Indices: 79023753--79023903 Score: 169
Period size: 55 Copynumber: 2.8 Consensus size: 54
79023743 ATATTGAGTC
* * *
79023753 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAAT
* ** ** *
79023807 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAAT
* **
79023862 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCT
79023904 GTACAATTTA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 37 0.45
55 45 0.55
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAAT
Found at i:79027161 original size:43 final size:43
Alignment explanation
Indices: 79027109--79027254 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
79027099 TTGGTTTTCA
79027109 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
79027152 GCAATAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
79027195 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
79027238 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
79027255 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:79027275 original size:29 final size:29
Alignment explanation
Indices: 79027240--79027309 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
79027230 TGAGATTGGC
* *
79027240 ACTAAGTGTGCGGGCTTGAAA-TGCATGGA
1 ACTAAGTGTGCGAG-TTGAAAGTACATGGA
* *
79027269 ACTAAGTGTGCGAGTTTAAAGTACATGGC
1 ACTAAGTGTGCGAGTTGAAAGTACATGGA
79027298 ACTAAGTGTGCG
1 ACTAAGTGTGCG
79027310 TGGTTGATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCGAGTTGAAAGTACATGGA
Found at i:79027743 original size:40 final size:40
Alignment explanation
Indices: 79027699--79028023 Score: 479
Period size: 40 Copynumber: 7.9 Consensus size: 40
79027689 GAGTTACTAA
*
79027699 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
79027739 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
79027779 ATCCGGGCTAAGTCCCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCC-GG----G---CTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
79027827 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
79027867 ATCCGGGCTAAGTCCCGAAGAGCATTCATGATAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
79027907 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
79027947 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
79027987 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
79028024 CGTGTATTCG
Statistics
Matches: 263, Mismatches: 14, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
40 220 0.84
41 2 0.01
43 1 0.00
45 1 0.00
47 2 0.01
48 37 0.14
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:79031034 original size:27 final size:27
Alignment explanation
Indices: 79031003--79031180 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
79030993 TAAATTGTAC
79031003 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
79031030 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79031056 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79031084 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
79031112 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79031139 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79031166 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79031181 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79031117 original size:82 final size:81
Alignment explanation
Indices: 79031004--79031159 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
79030994 AAATTGTACA
*
79031004 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
79031068 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79031085 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
79031150 TGCGAGTTGA
65 TGCGAATTGA
79031160 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79031171 original size:82 final size:81
Alignment explanation
Indices: 79031000--79031180 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
79030990 GATTAAATTG
*
79031000 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
79031065 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
79031081 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
79031145 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
79031163 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
79031181 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:79035562 original size:47 final size:47
Alignment explanation
Indices: 79035496--79035971 Score: 799
Period size: 47 Copynumber: 10.1 Consensus size: 47
79035486 GAAATGATAG
79035496 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
79035543 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
79035592 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
79035639 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79035686 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79035733 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
79035780 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79035827 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79035874 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
79035921 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
79035968 TAAG
1 TAAG
79035972 TCCCGAAGGG
Statistics
Matches: 408, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 361 0.88
49 47 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:79036145 original size:36 final size:36
Alignment explanation
Indices: 79036090--79036167 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 36
79036080 CCGAGCTCTA
* *
79036090 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGA-CCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
79036127 AAGACCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCGATAACTACGTGTGGAGATTATGTCCGGGT
79036163 AAGAC
1 AAGAC
79036168 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 32 0.86
37 5 0.14
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (36 bp):
AAGACCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:79037725 original size:17 final size:17
Alignment explanation
Indices: 79037705--79037737 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
79037695 TAGAATTGGG
*
79037705 TTGAGAAGTTAATTTAA
1 TTGAGAAATTAATTTAA
79037722 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
79037738 GTTAAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:79039139 original size:56 final size:56
Alignment explanation
Indices: 79038973--79039145 Score: 307
Period size: 56 Copynumber: 3.1 Consensus size: 56
79038963 ACAAGGGATG
79038973 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
79039029 ATGGGCAAAACATGTCATGAAACA---TGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
79039082 ATGGGCAAAACATATCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
79039138 ATGGGCAA
1 ATGGGCAA
79039146 TAAACTAATA
Statistics
Matches: 112, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
53 52 0.46
56 60 0.54
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:79040663 original size:47 final size:47
Alignment explanation
Indices: 79040609--79041062 Score: 639
Period size: 47 Copynumber: 9.6 Consensus size: 47
79040599 TATTTGAATA
*
79040609 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
79040656 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
79040705 AATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
79040752 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
79040801 AATGAGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
79040848 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATCTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
79040895 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
79040942 AATGTGAACA-TGCATATAT-TAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGT-GATAAGGCCGAATGGCCAATGTGATG
*
79040989 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
79041036 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
79041063 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 23, Indels: 16
0.91 0.06 0.04
Matches are distributed among these distances:
46 2 0.01
47 283 0.75
48 1 0.00
49 89 0.24
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:79043613 original size:40 final size:41
Alignment explanation
Indices: 79043343--79043698 Score: 340
Period size: 40 Copynumber: 8.9 Consensus size: 41
79043333 TCGAATGATG
* *
79043343 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGACTATA
* * * *
79043383 TCCGGACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGACTATA
* * * *
79043422 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACTATA
* * * *
79043462 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACTATA
* * *
79043502 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACTATA
* *
79043542 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACTATA
*
79043582 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACTATA
* ** * *
79043622 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTG-TTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACTATA
* * * *
79043662 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAC
79043699 GTGTATTCGG
Statistics
Matches: 275, Mismatches: 32, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.13
40 220 0.80
41 20 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACTATA
Found at i:79046540 original size:47 final size:47
Alignment explanation
Indices: 79046486--79047035 Score: 759
Period size: 47 Copynumber: 11.6 Consensus size: 47
79046476 TATTTGAATA
* *
79046486 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
79046533 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
79046582 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
79046631 AATGTGAAAGTGTATATATGTGATAAGGCTGAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
79046678 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
79046727 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
79046774 AATGAGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
79046821 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
79046868 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
79046915 AATGTGAACA-TGCATATATGAGATAAGGTCGAATGTCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
79046962 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
79047009 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
79047036 TCCCGAAGGG
Statistics
Matches: 464, Mismatches: 33, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 325 0.70
49 137 0.30
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:79050178 original size:35 final size:35
Alignment explanation
Indices: 79050132--79050269 Score: 134
Period size: 35 Copynumber: 3.9 Consensus size: 35
79050122 CAAGCCTGAC
* *
79050132 CTTTAGAAAAGGTTGGGATAGACCCGTCTAATGCAA
1 CTTTA-AAAAGGTTGGGATAGACCCATCTAAGGCAA
* * * * * **
79050168 TTTTAAAAAGGCTGGGAAAGATCTATCTAAGATAA
1 CTTTAAAAAGGTTGGGATAGACCCATCTAAGGCAA
79050203 CCTTT-AAAAGGTTGGGATAGACCCATCTAAGGCAA
1 -CTTTAAAAAGGTTGGGATAGACCCATCTAAGGCAA
* * * *
79050238 CCTTAGAAAGGTTGGGATAGACACGTCTAAGG
1 CTTTAAAAAGGTTGGGATAGACCCATCTAAGG
79050270 TAATTTTTTC
Statistics
Matches: 80, Mismatches: 20, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
34 3 0.04
35 70 0.88
36 7 0.09
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (35 bp):
CTTTAAAAAGGTTGGGATAGACCCATCTAAGGCAA
Found at i:79053987 original size:85 final size:85
Alignment explanation
Indices: 79053876--79054074 Score: 272
Period size: 85 Copynumber: 2.3 Consensus size: 85
79053866 CAATATCGAT
* * * * * * *
79053876 GCCTCTGTCCCAGATAGGGTCTTACACGAAATTAGATACGATGCCGATGTCTCAGACATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGCCCCAGACATGGTCTT
*
79053941 ATACATAAATCTCAAACGAG
66 ATACATAAATCTCAAACAAG
* * * *
79053961 GCTTGTGTGCCAGACACGGTCTTACACGGAATCAGATACAATGTCGATGCCCCAGACATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGCCCCAGACATGGTCTT
* *
79054026 ATACGTAAATCTCAATCAAG
66 ATACATAAATCTCAAACAAG
79054046 GCCTGTGTCCCAGACACGGTCTTACACGA
1 GCCTGTGTCCCAGACACGGTCTTACACGA
79054075 TATCTTAGAC
Statistics
Matches: 97, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (85 bp):
GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGCCCCAGACATGGTCTT
ATACATAAATCTCAAACAAG
Found at i:79054060 original size:43 final size:43
Alignment explanation
Indices: 79053923--79054069 Score: 122
Period size: 43 Copynumber: 3.4 Consensus size: 43
79053913 ACGATGCCGA
* * * * * *
79053923 TGTCTCAGACATGGTCTTATACATAAATCTCAAACGAGGCTTG
1 TGTCCCAGACACGGTCTTATACGTAAATCTCAATCAAGGCCTG
* * * * *
79053966 TGTGCCAGACACGGTCTTACACG-GAA--TCAGATACAATGTC-G
1 TGTCCCAGACACGGTCTTATACGTAAATCTCA-AT-CAAGGCCTG
* *
79054007 ATGCCCCAGACATGGTCTTATACGTAAATCTCAATCAAGGCCTG
1 -TGTCCCAGACACGGTCTTATACGTAAATCTCAATCAAGGCCTG
79054051 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
79054070 CACGATATCT
Statistics
Matches: 77, Mismatches: 20, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
40 3 0.04
41 2 0.03
42 24 0.31
43 42 0.55
44 3 0.04
45 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
TGTCCCAGACACGGTCTTATACGTAAATCTCAATCAAGGCCTG
Found at i:79061214 original size:42 final size:42
Alignment explanation
Indices: 79061105--79061348 Score: 124
Period size: 43 Copynumber: 5.7 Consensus size: 42
79061095 ATCAAGTACA
* * * * * *
79061105 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCA-ATATTG
1 ATGCCGATGTCCCAGACATAGTCTTACACG-AAATCAGATA-CG
** * ** *
79061148 ATGCCTCTGTCCCAGATAGGGTCTTCCACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATAGTCTTACACGAAATCAGATACG
* * *
79061190 ATGCCGATGTCTCAGACATAGTCTTATACATAAATCTCA-AT-CG
1 ATGCCGATGTCCCAGACATAGTCTTACAC-GAAA--TCAGATACG
* * * * *
79061233 AGGCCTG-TTTCCCATACACAGTCTTACACGAAATCAGATACA
1 ATGCC-GATGTCCCAGACATAGTCTTACACGAAATCAGATACG
* *
79061275 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCA-AT-CG
1 ATGCCGATGTCCCAGACATAGTCTTACACG-AAA--TCAGATACG
* **
79061318 AGGCCTG-TGTCCCAGACACGGTCTTACACGA
1 ATGCC-GATGTCCCAGACATAGTCTTACACGA
79061349 TATCTTAGAC
Statistics
Matches: 152, Mismatches: 37, Indels: 25
0.71 0.17 0.12
Matches are distributed among these distances:
40 3 0.02
41 3 0.02
42 54 0.36
43 80 0.53
44 6 0.04
45 6 0.04
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATAGTCTTACACGAAATCAGATACG
Found at i:79061246 original size:85 final size:85
Alignment explanation
Indices: 79061150--79061348 Score: 299
Period size: 85 Copynumber: 2.3 Consensus size: 85
79061140 CAATATTGAT
* * * * * *
79061150 GCCTCTGTCCCAGATAGGGTCTTCCACGAAATCAGATACGATGCCGATGTCTCAGACATAGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGTCCCAGACATAGTCTT
79061215 ATACATAAATCTCAATCGAG
66 ATACATAAATCTCAATCGAG
* * * *
79061235 GCCTGTTTCCCATACACAGTCTTACACGAAATCAGATACAATGCCGATGTCCCAGACATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGTCCCAGACATAGTCTT
*
79061300 ATACGTAAATCTCAATCGAG
66 ATACATAAATCTCAATCGAG
79061320 GCCTGTGTCCCAGACACGGTCTTACACGA
1 GCCTGTGTCCCAGACACGGTCTTACACGA
79061349 TATCTTAGAC
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 100 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (85 bp):
GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGTCCCAGACATAGTCTT
ATACATAAATCTCAATCGAG
Found at i:79061257 original size:43 final size:42
Alignment explanation
Indices: 79061197--79061343 Score: 129
Period size: 43 Copynumber: 3.5 Consensus size: 42
79061187 ACGATGCCGA
* *
79061197 TGTCTCAGACATAGTCTTATACATAAATCTCAATCGAGGCCTG
1 TGTCCCAGACACAGTCTTATAC-TAAATCTCAATCGAGGCCTG
* * * * * *
79061240 TTTCCCATACACAGTCTTACACGAAA--TCAGATACAATGCC-G
1 TGTCCCAGACACAGTCTTATACTAAATCTCA-AT-CGAGGCCTG
**
79061281 ATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTG
1 -TGTCCCAGACACAGTCTTATAC-TAAATCTCAATCGAGGCCTG
*
79061325 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACAGTCTTA
79061344 CACGATATCT
Statistics
Matches: 80, Mismatches: 17, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
40 3 0.04
41 3 0.04
42 25 0.31
43 43 0.54
44 3 0.04
45 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACACAGTCTTATACTAAATCTCAATCGAGGCCTG
Found at i:79069285 original size:47 final size:47
Alignment explanation
Indices: 79069207--79069708 Score: 752
Period size: 47 Copynumber: 10.6 Consensus size: 47
79069197 CCCTTCGGGA
* * * * * * *
79069207 CTTATCACATTTATACCCTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79069254 CCTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79069301 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79069348 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79069395 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79069444 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79069491 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79069538 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79069587 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79069636 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79069683 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
79069709 CACAATTATC
Statistics
Matches: 422, Mismatches: 29, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 284 0.67
49 138 0.33
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79069286 original size:25 final size:25
Alignment explanation
Indices: 79069258--79069335 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
79069248 CTCGGCCCTG
79069258 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
* ** *** *
79069283 TCACAT-CAGCCA-TTAGGC-CTCA
1 TCACATATATACACTTTCACATTCA
79069305 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
79069330 TCACAT
1 TCACAT
79069336 CGGCTATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 6 0.17
25 15 0.42
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:79069445 original size:96 final size:96
Alignment explanation
Indices: 79069207--79069708 Score: 777
Period size: 96 Copynumber: 5.3 Consensus size: 96
79069197 CCCTTCGGGA
* * * * * *
79069207 CTTATCACAT-T-TATACCCTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
79069270 ACTTTCACATTCATCACATCAGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
79069301 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
79069364 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79069395 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
79069460 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79069491 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
* *
79069554 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
79069587 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
79069652 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79069683 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
79069709 CACAATTATC
Statistics
Matches: 373, Mismatches: 27, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
93 1 0.00
94 138 0.37
96 190 0.51
98 44 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79069463 original size:143 final size:143
Alignment explanation
Indices: 79069207--79069708 Score: 805
Period size: 143 Copynumber: 3.5 Consensus size: 143
79069197 CCCTTCGGGA
* * * * * * * * *
79069207 CTTATCACATTTATACCCTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
** * *
79069270 ACTTTCACATTCATCACATCAGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
79069335 TCGGCTATTAGGC
131 TCGGCTATTAGGC
79069348 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
79069413 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
79069478 TCGGCTATTAGGC
131 TCGGCTATTAGGC
*
79069491 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
79069556 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* * *
79069621 CATTGGCCATTCGGC
129 CATCGGCTATTAGGC
79069636 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
79069701 A--TTCACAT
66 ACTTTCACAT
79069709 CACAATTATC
Statistics
Matches: 339, Mismatches: 18, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
141 46 0.14
143 192 0.57
145 101 0.30
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:79082369 original size:25 final size:25
Alignment explanation
Indices: 79082341--79082451 Score: 154
Period size: 25 Copynumber: 4.5 Consensus size: 25
79082331 AAACCTTGAT
* *
79082341 AATTTCCTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGATTA
79082366 AATTTGCTCTTAATAATTCC-AGTTA
1 AATTTGCTCTTAATAATTCCGA-TTA
79082391 AATTTGCTCTTAATAATTCCGATTA
1 AATTTGCTCTTAATAATTCCGATTA
* *
79082416 AATTTGCTTTTAATATTTCC-ATTA
1 AATTTGCTCTTAATAATTCCGATTA
*
79082440 AATTTGCCCTTA
1 AATTTGCTCTTA
79082452 TTGTTTCCGA
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
24 14 0.18
25 63 0.81
26 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.46
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGATTA
Found at i:79083345 original size:45 final size:45
Alignment explanation
Indices: 79083280--79083455 Score: 234
Period size: 45 Copynumber: 4.0 Consensus size: 45
79083270 TATCGTACAG
* **
79083280 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGTGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
79083325 TACTATTAGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
79083370 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGATGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
79083415 TGA-GA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
79083456 TGAATTCGGG
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
42 11 0.09
43 17 0.15
44 5 0.04
45 83 0.71
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:79086081 original size:28 final size:28
Alignment explanation
Indices: 79086043--79086196 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
79086033 TAAATTGTAC
79086043 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
79086071 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
**
79086099 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
79086127 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
79086155 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
79086182 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79086197 GACTTAATAT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 24 0.20
28 97 0.80
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:79094503 original size:37 final size:38
Alignment explanation
Indices: 79094390--79094546 Score: 187
Period size: 39 Copynumber: 4.1 Consensus size: 38
79094380 GCTCCTCGTT
* *
79094390 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAT-TCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAT-TAGTATCTCGCA
* *
79094429 CAAATGCCTTCCGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTT-CGGACTTAGCCCGGATTAGTATCTCGCA
79094468 CAAATGCCTTCGG-CTTAGCCCGGAATTA-TATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGG-ATTAGTATCTCGCA
* *
79094505 CAAATGCCTTCGGATTTAGTCCGGATTTAGTATC-CGCA
1 CAAATGCCTTCGGACTTAGCCCGGA-TTAGTATCTCGCA
79094543 CAAA
1 CAAA
79094547 GCTCTATCTT
Statistics
Matches: 104, Mismatches: 8, Indels: 13
0.83 0.06 0.10
Matches are distributed among these distances:
37 31 0.30
38 31 0.30
39 41 0.39
40 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAGCCCGGATTAGTATCTCGCA
Found at i:79094535 original size:76 final size:77
Alignment explanation
Indices: 79094390--79094546 Score: 189
Period size: 76 Copynumber: 2.1 Consensus size: 77
79094380 GCTCCTCGTT
*
79094390 CAAATGCCTTCGGGACATAGCCCGGTTATAGTATTCGCACAAATGCCTTCCGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTACTCGCACAAATGCCTTCCGGACTTAACCCGGA
79094455 TTAGTAACTCGCA
66 TTAGTAAC-CGCA
* * **
79094468 CAAATGCCTTC-GG-CTTAGCCCGGAATTATA-T-CTCGCACAAATGCCTT-CGGATTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGG--TTATAGTACTCGCACAAATGCCTTCCGGACTTAACCCG
*
79094528 GATTTAGTATCCGCA
64 GA-TTAGTAACCGCA
79094543 CAAA
1 CAAA
79094547 GCTCTATCTT
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
75 20 0.29
76 31 0.44
77 3 0.04
78 16 0.23
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTACTCGCACAAATGCCTTCCGGACTTAACCCGGA
TTAGTAACCGCA
Found at i:79096406 original size:10 final size:10
Alignment explanation
Indices: 79096390--79096447 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
79096380 CAACTCCGAC
79096390 CAGCTCAATT
1 CAGCTCAATT
* *
79096400 GAGCTCATTT
1 CAGCTCAATT
79096410 CAGCTCAA-T
1 CAGCTCAATT
79096419 CGAGCTCAATT
1 C-AGCTCAATT
*
79096430 TAGCTACAATT
1 CAGCT-CAATT
79096441 CAGCTCA
1 CAGCTCA
79096448 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:79096413 original size:20 final size:20
Alignment explanation
Indices: 79096390--79096450 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
79096380 CAACTCCGAC
79096390 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
79096410 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
79096431 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
79096451 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:79109874 original size:25 final size:24
Alignment explanation
Indices: 79109835--79109888 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
79109825 TAATTAGAAA
* *
79109835 TAAAAGATTAACAATTTAATAAAT
1 TAAAAGATTAACAATTAAAAAAAT
79109859 TGAAAA-ATTAATCAATTAAAAAAAT
1 T-AAAAGATTAA-CAATTAAAAAAAT
79109884 TAAAA
1 TAAAA
79109889 TTTTGGGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.30
Consensus pattern (24 bp):
TAAAAGATTAACAATTAAAAAAAT
Found at i:79111380 original size:21 final size:20
Alignment explanation
Indices: 79111335--79111380 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
79111325 GTTTTAAATG
* *
79111335 TTTTTTAGTCTTTAAATTGA
1 TTTTTTAGCCGTTAAATTGA
*
79111355 GTTTTTAGCCGTTAAATTGCA
1 TTTTTTAGCCGTTAAATTG-A
79111376 TTTTT
1 TTTTT
79111381 AAATAAAAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.57
Consensus pattern (20 bp):
TTTTTTAGCCGTTAAATTGA
Found at i:79111381 original size:20 final size:20
Alignment explanation
Indices: 79111336--79111373 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
79111326 TTTTAAATGT
* *
79111336 TTTTTAGTCTTTAAATTGAG
1 TTTTTAGCCGTTAAATTGAG
79111356 TTTTTAGCCGTTAAATTG
1 TTTTTAGCCGTTAAATTG
79111374 CATTTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.53
Consensus pattern (20 bp):
TTTTTAGCCGTTAAATTGAG
Found at i:79113838 original size:27 final size:27
Alignment explanation
Indices: 79113819--79113991 Score: 240
Period size: 27 Copynumber: 6.4 Consensus size: 27
79113809 ATTACCAAAG
* *
79113819 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
79113846 CACCATCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
79113873 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
79113900 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
79113927 TACCATCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
79113954 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
79113981 TACCCTCGATT
1 TACCCTCGATT
79113992 GTGAAATTAC
Statistics
Matches: 128, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 126 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:79113909 original size:81 final size:81
Alignment explanation
Indices: 79113795--79113991 Score: 322
Period size: 81 Copynumber: 2.4 Consensus size: 81
79113785 ACTAAAATGT
* ***
79113795 CCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTCACCATCGATTTAC
1 CCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCATCGATTTAC
79113860 AAAATTACCATTTTAC
66 AAAATTACCATTTTAC
* *
79113876 CCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCATCGATTTAC
1 CCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCATCGATTTAC
79113941 AAAATTACCATTTTAC
66 AAAATTACCATTTTAC
* *
79113957 CCTCAGTTTACAAAATTACCATTTTACCCTCGATT
1 CCTCAATTTATAAAATTACCATTTTACCCTCGATT
79113992 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (81 bp):
CCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCATCGATTTAC
AAAATTACCATTTTAC
Found at i:79114013 original size:27 final size:27
Alignment explanation
Indices: 79113990--79114118 Score: 120
Period size: 27 Copynumber: 4.8 Consensus size: 27
79113980 TTACCCTCGA
*
79113990 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTGAAATTACCGAAATACCCCTAGT
** *
79114016 AGGAT-AGAATTACCAAAATACCCCTAGT
1 TTG-TGA-AATTACCGAAATACCCCTAGT
* *
79114044 TTGTAAAATTACCGAAATACCACTAGT
1 TTGTGAAATTACCGAAATACCCCTAGT
* * *
79114071 TTGTGACATTACCGAAATACCTC-AAT
1 TTGTGAAATTACCGAAATACCCCTAGT
* *
79114097 TTGTAAAATTACCAAAATACCC
1 TTGTGAAATTACCGAAATACCC
79114119 TTGATTTACA
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
26 22 0.27
27 57 0.69
28 4 0.05
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.29
Consensus pattern (27 bp):
TTGTGAAATTACCGAAATACCCCTAGT
Found at i:79114064 original size:54 final size:53
Alignment explanation
Indices: 79113990--79114118 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 53
79113980 TTACCCTCGA
* * *
79113990 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGA-ATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCCTAGTAGG-T-GACATTACCAAAATACCCC-AAT
* ** * *
79114044 TTGTAAAATTACCGAAATACCACTAGTTTGTGACATTACCGAAATACCTCAAT
1 TTGTAAAATTACCGAAATACCCCTAGTAGGTGACATTACCAAAATACCCCAAT
*
79114097 TTGTAAAATTACCAAAATACCC
1 TTGTAAAATTACCGAAATACCC
79114119 TTGATTTACA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
53 24 0.38
54 36 0.57
55 3 0.05
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCGAAATACCCCTAGTAGGTGACATTACCAAAATACCCCAAT
Found at i:79114205 original size:27 final size:27
Alignment explanation
Indices: 79114100--79114208 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 27
79114090 CCTCAATTTG
** *
79114100 TAAAATTACCAAAATACCCTTGATTTA
1 TAAAATTATAAAAATACCCTTGGTTTA
* * * *
79114127 CAAAATTATAGAAATACCCTTGACTTTC
1 TAAAATTATAAAAATACCCTTG-GTTTA
*
79114155 TAAAAATTATAAAAATACCATTGGTTTA
1 T-AAAATTATAAAAATACCCTTGGTTTA
* *
79114183 TAAAATTACT-GAAATACCTTTGGTTT
1 TAAAATTA-TAAAAATACCCTTGGTTT
79114209 GTAGATTTAC
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
27 39 0.59
28 8 0.12
29 19 0.29
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (27 bp):
TAAAATTATAAAAATACCCTTGGTTTA
Found at i:79114218 original size:27 final size:27
Alignment explanation
Indices: 79114042--79114208 Score: 79
Period size: 27 Copynumber: 6.1 Consensus size: 27
79114032 AATACCCCTA
* * * *
79114042 GTTTGTAAAATTACCGAAATACCACTA
1 GTTTATAAAATTACTGAAATACCATTG
* * * * **
79114069 GTTTGTGACATTACCGAAATACC-TCA
1 GTTTATAAAATTACTGAAATACCATTG
* * ** *
79114095 ATTTGTAAAATTACCAAAATACCCTTG
1 GTTTATAAAATTACTGAAATACCATTG
* * *
79114122 ATTTACAAAATTA-TAGAAATACCCTTG
1 GTTTATAAAATTACT-GAAATACCATTG
* * *
79114149 ACTTTCTAAAAATTA-TAAAAATACCATTG
1 -GTTTAT-AAAATTACT-GAAATACCATTG
*
79114178 GTTTATAAAATTACTGAAATACCTTTG
1 GTTTATAAAATTACTGAAATACCATTG
79114205 GTTT
1 GTTT
79114209 GTAGATTTAC
Statistics
Matches: 112, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
26 20 0.18
27 65 0.58
28 8 0.07
29 19 0.17
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (27 bp):
GTTTATAAAATTACTGAAATACCATTG
Found at i:79114283 original size:27 final size:26
Alignment explanation
Indices: 79114249--79114326 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
79114239 AAATGACTAA
*
79114249 AATACCCCTAATATGTAAAATGACCGT
1 AATACCCCT-GTATGTAAAATGACCGT
* *
79114276 AA-AGCCCCTGTAAGGTAAAGTGACCGT
1 AATA-CCCCTGT-ATGTAAAATGACCGT
79114303 AATACCCCTGTATGATAAAATGAC
1 AATACCCCTGTATG-TAAAATGAC
79114327 GAATATGCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 4 0.10
27 37 0.88
28 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (26 bp):
AATACCCCTGTATGTAAAATGACCGT
Found at i:79115095 original size:16 final size:16
Alignment explanation
Indices: 79115074--79115104 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79115064 CAAATATGGG
*
79115074 CATGACATTTTGCATA
1 CATGACATGTTGCATA
79115090 CATGACATGTTGCAT
1 CATGACATGTTGCAT
79115105 GGGTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:79115176 original size:25 final size:25
Alignment explanation
Indices: 79115135--79115204 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
79115125 AGGAAGTGCT
* *
79115135 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
79115160 AAAAGGGCTTTGTCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
79115185 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
79115205 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:79115217 original size:24 final size:24
Alignment explanation
Indices: 79115134--79115229 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
79115124 GAGGAAGTGC
*
79115134 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* * *
79115159 GAAAAGGGCTTTGTCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
79115183 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
79115207 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
79115230 ATATGATAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
23 5 0.09
24 11 0.19
25 41 0.71
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:79125311 original size:55 final size:54
Alignment explanation
Indices: 79125197--79125313 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 54
79125187 CGCACAGCTA
* *
79125197 CTGACTTGCCCACACGGCTACAACACACACCCATGTGCTTTGGCCGTGGTCGAGT
1 CTGACTTGCCCACACGGCTAC-ACACACACCCATGTGATTTGGCCGTGGTCGAGC
* * * *
79125252 CTGACTTGGGCCACACGGCTAGC-CACACGCCCGTGTGATTTGGCCGTGTTC-AGGC
1 CTGACTT-GCCCACACGGCTA-CACACACACCCATGTGATTTGGCCGTGGTCGA-GC
79125307 CTGACTT
1 CTGACTT
79125314 ACAATTGTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
54 1 0.02
55 39 0.74
56 12 0.23
57 1 0.02
ACGTcount: A:0.17, C:0.33, G:0.26, T:0.23
Consensus pattern (54 bp):
CTGACTTGCCCACACGGCTACACACACACCCATGTGATTTGGCCGTGGTCGAGC
Found at i:79126489 original size:37 final size:37
Alignment explanation
Indices: 79126426--79126534 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
79126416 AGCTCAGACG
* *
79126426 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79126463 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79126500 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79126535 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79126793 original size:47 final size:47
Alignment explanation
Indices: 79126741--79126887 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
79126731 CATACATATT
* * * *
79126741 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
79126788 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
79126835 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
79126882 TCACAT
1 TCACAT
79126888 ACAATCCTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:79131146 original size:40 final size:40
Alignment explanation
Indices: 79131100--79131451 Score: 578
Period size: 40 Copynumber: 8.8 Consensus size: 40
79131090 GCAGCATGAT
* * *
79131100 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
79131140 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
79131180 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
79131220 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
79131260 TGCTCTTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
79131300 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
79131340 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
79131380 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
79131420 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
79131452 CTCAATTCTC
Statistics
Matches: 293, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 293 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:79132782 original size:37 final size:37
Alignment explanation
Indices: 79132719--79132827 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
79132709 AGCTCAGACG
* *
79132719 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79132756 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79132793 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79132828 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79133086 original size:47 final size:47
Alignment explanation
Indices: 79133034--79133180 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
79133024 CATACATATT
* * * *
79133034 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
79133081 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
79133128 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
79133175 TCACAT
1 TCACAT
79133181 ACAATCCTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:79137207 original size:25 final size:25
Alignment explanation
Indices: 79137170--79137221 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
79137160 AAGGAATTCG
79137170 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
79137195 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
79137220 CA
1 CA
79137222 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:79137441 original size:40 final size:40
Alignment explanation
Indices: 79137397--79137630 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
79137387 CCAGCATGAT
* * * *
79137397 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
79137437 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
79137477 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * ** *
79137517 TGTTCTTTGAAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
79137557 TGCTCTTTGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
79137597 TGCTCTTCGGGACTTAGCCCGGATATATCACTAG
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAG
79137631 TGTGACAGCC
Statistics
Matches: 171, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:79139324 original size:39 final size:40
Alignment explanation
Indices: 79139229--79139451 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
79139219 TTGGATGATG
*
79139229 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
79139267 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
79139308 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
79139347 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
79139386 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
79139425 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
79139452 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 92 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:79139412 original size:79 final size:79
Alignment explanation
Indices: 79139229--79139451 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 79
79139219 TTGGATGATG
* * * * *
79139229 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
79139291 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
*
79139308 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCATT
*
79139370 TGTGCGAGTTACTAAA
64 TGTGCGAGATACTAAA
* * *
79139386 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
79139451 G
65 G
79139452 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
78 45 0.36
79 57 0.46
80 22 0.18
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:79139473 original size:79 final size:79
Alignment explanation
Indices: 79139281--79139484 Score: 188
Period size: 79 Copynumber: 2.6 Consensus size: 79
79139271 GGACTAAGAT
** * *
79139281 CCGAAGGCATTTGTGCGAGAT-ACTAATTC-CGGGCTAAG-CCCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATCTC-GGTTAAGTCCCGAAGGCATTTGTGCGAGATAC
*
79139343 TAATTCCGGGCTAAGC
64 TAATACCGGGCTAAGC
** * *
79139359 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCTCGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
79139423 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
79139439 CCGAAGGCATTTGAACGAG-GAGCTATATC-CGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCTCGGTTAAGTCCCGAAGG
79139485 TACGTGATTT
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
77 1 0.01
78 35 0.33
79 47 0.44
80 24 0.22
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCTCGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:79140849 original size:40 final size:40
Alignment explanation
Indices: 79140805--79140970 Score: 269
Period size: 40 Copynumber: 4.2 Consensus size: 40
79140795 GGGTGTTACA
79140805 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
1 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
* *
79140845 ACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATC
1 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
* * *
79140885 AATAGCACGAATGCTCTACGAAACTTAGCCCGGATACATC
1 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
* *
79140925 ACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATC
1 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
79140965 ACTAGC
1 ACTAGC
79140971 CCGGATACTT
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 114 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
Found at i:79140940 original size:80 final size:80
Alignment explanation
Indices: 79140807--79140970 Score: 301
Period size: 80 Copynumber: 2.0 Consensus size: 80
79140797 GTGTTACAAC
* *
79140807 TAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
1 TAGCACGAATGCTCTACGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
79140872 GCCCGGATATATCAA
66 GCCCGGATATATCAA
79140887 TAGCACGAATGCTCTACGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
1 TAGCACGAATGCTCTACGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
*
79140952 GCCCGGATATATCAC
66 GCCCGGATATATCAA
79140967 TAGC
1 TAGC
79140971 CCGGATACTT
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
TAGCACGAATGCTCTACGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
GCCCGGATATATCAA
Found at i:79144345 original size:15 final size:15
Alignment explanation
Indices: 79144325--79144360 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
79144315 TGTTTATAAA
79144325 AAGTAAAAATTAACT
1 AAGTAAAAATTAACT
79144340 AAGT--AAATTAACT
1 AAGTAAAAATTAACT
79144353 AAG-AAAAA
1 AAGTAAAAA
79144361 CAAAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
13 12 0.63
14 3 0.16
15 4 0.21
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.22
Consensus pattern (15 bp):
AAGTAAAAATTAACT
Found at i:79146195 original size:36 final size:36
Alignment explanation
Indices: 79146148--79146220 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
79146138 ATTGTTCGAA
*
79146148 TTATTCTCAATTATTATCATGATAGTAAGAATAGAC
1 TTATTCTCAATTATTATCATGATAGCAAGAATAGAC
79146184 TTATTCTCAATTATTATCATGATAGCAAGAATAGAC
1 TTATTCTCAATTATTATCATGATAGCAAGAATAGAC
79146220 T
1 T
79146221 GAACGCTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.38
Consensus pattern (36 bp):
TTATTCTCAATTATTATCATGATAGCAAGAATAGAC
Found at i:79151107 original size:23 final size:23
Alignment explanation
Indices: 79151057--79151110 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
79151047 ATCGCAGTGT
*
79151057 AGCTACTAATAGTAACGCAACAA
1 AGCTGCTAATAGTAACGCAACAA
*
79151080 AGCTGCTAATTGTAACGCAGA-AA
1 AGCTGCTAATAGTAACGCA-ACAA
79151103 AGCTGCTA
1 AGCTGCTA
79151111 GTATATATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 27 0.96
24 1 0.04
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (23 bp):
AGCTGCTAATAGTAACGCAACAA
Found at i:79157095 original size:43 final size:42
Alignment explanation
Indices: 79157008--79157116 Score: 148
Period size: 43 Copynumber: 2.6 Consensus size: 42
79156998 TGAGATTACG
* *
79157008 TGTAAGACCATCTCTGGGATATGGCATCAATATGAGGATTCA
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGGATCCA
* * *
79157050 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGA-GATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATATGAGGAT-CCA
79157093 TGTAAGACCATATCTGGGATATGG
1 TGTAAGACCATATCTGGGATATGG
79157117 ACTTGGTATA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATATGAGGATCCA
Found at i:79166529 original size:14 final size:14
Alignment explanation
Indices: 79166507--79166544 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
79166497 TTAGAAACCA
*
79166507 CTAATGTGACAGCC
1 CTAAAGTGACAGCC
79166521 CTAAAGTGACAGCC
1 CTAAAGTGACAGCC
79166535 CTAAAGTGAC
1 CTAAAGTGAC
79166545 CCTAGTCGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.18
Consensus pattern (14 bp):
CTAAAGTGACAGCC
Found at i:79168319 original size:40 final size:41
Alignment explanation
Indices: 79168260--79168411 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
79168250 CATTTGAATG
* * *
79168260 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
79168300 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
79168340 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
79168380 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
79168412 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:79168423 original size:80 final size:80
Alignment explanation
Indices: 79168260--79168431 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
79168250 CATTTGAATG
* * * * *
79168260 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
79168325 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
79168340 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
79168404 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
79168420 ATATCC-GGCTAA
1 ATATCCGGGCTAA
79168432 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:79176406 original size:40 final size:41
Alignment explanation
Indices: 79176347--79176498 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
79176337 CATTTGAATG
* * *
79176347 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
79176387 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
79176427 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
79176467 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
79176499 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:79176510 original size:80 final size:80
Alignment explanation
Indices: 79176347--79176518 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
79176337 CATTTGAATG
* * * * *
79176347 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
79176412 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
79176427 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
79176491 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
79176507 ATATCC-GGCTAA
1 ATATCCGGGCTAA
79176519 ATTCTGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:79181322 original size:42 final size:42
Alignment explanation
Indices: 79181210--79181374 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
79181200 ATTAGGGTTA
* *
79181210 ATGAGACTACGTGTAAGACCATATTTAGGATATGGCATCAAT
1 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAAT
* *
79181252 ATGAGACTACGCGTAAGACCATATCTGGGATATGGCATCGAT
1 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAAT
* * * * ** * *
79181294 ATGAGACTTCGTGTAAGACCACAGCTGGGCTATTTACTTCGAT
1 ATGAGACTACGTGTAAGACCATATCTGGGATA-TGGCATCAAT
* * * *
79181337 ACGAGATTACATATAAGACCATATCTGGGATATGGCAT
1 ATGAGACTACGTGTAAGACCATATCTGGGATATGGCAT
79181375 TGGTACGGTA
Statistics
Matches: 99, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 68 0.69
43 31 0.31
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (42 bp):
ATGAGACTACGTGTAAGACCATATCTGGGATATGGCATCAAT
Found at i:79188633 original size:12 final size:12
Alignment explanation
Indices: 79188616--79188667 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
79188606 ATGTTTTGTT
*
79188616 ACACGGCCTGCC
1 ACACGGCCGGCC
*
79188628 ACACGGGCGGCC
1 ACACGGCCGGCC
*
79188640 ACACGGCCTGCC
1 ACACGGCCGGCC
*
79188652 ACACGGGCGGCC
1 ACACGGCCGGCC
79188664 ACAC
1 ACAC
79188668 CCCCGTGTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.19, C:0.46, G:0.31, T:0.04
Consensus pattern (12 bp):
ACACGGCCGGCC
Found at i:79188643 original size:24 final size:24
Alignment explanation
Indices: 79188616--79188667 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
79188606 ATGTTTTGTT
79188616 ACACGGCCTGCCACACGGGCGGCC
1 ACACGGCCTGCCACACGGGCGGCC
79188640 ACACGGCCTGCCACACGGGCGGCC
1 ACACGGCCTGCCACACGGGCGGCC
79188664 ACAC
1 ACAC
79188668 CCCCGTGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.46, G:0.31, T:0.04
Consensus pattern (24 bp):
ACACGGCCTGCCACACGGGCGGCC
Found at i:79193806 original size:20 final size:20
Alignment explanation
Indices: 79193781--79193826 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
79193771 ATTGGGCCTT
79193781 GCCCATATT-AACACAGTTG
1 GCCCATATTCAACACAGTTG
*
79193800 AGCCCAT-TTCAATACAGTTG
1 -GCCCATATTCAACACAGTTG
79193820 GCCCATA
1 GCCCATA
79193827 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:79193835 original size:19 final size:20
Alignment explanation
Indices: 79193793--79193836 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
79193783 CCATATTAAC
** *
79193793 ACAGTTGAGCCCATTTCAAT
1 ACAGTTGAGCCCATAACAAA
79193813 ACAGTTG-GCCCATAACAAA
1 ACAGTTGAGCCCATAACAAA
79193832 ACAGT
1 ACAGT
79193837 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (20 bp):
ACAGTTGAGCCCATAACAAA
Found at i:79215042 original size:40 final size:40
Alignment explanation
Indices: 79214987--79215197 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
79214977 ATTTGAATGA
*
79214987 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
79215027 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
79215067 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
79215107 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
79215147 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
79215187 TATCC-GGCTAA
1 TATCCGGGCTAA
79215198 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:79218872 original size:10 final size:10
Alignment explanation
Indices: 79218856--79218913 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
79218846 CAACTCCGAC
79218856 CAGCTCAATT
1 CAGCTCAATT
* *
79218866 GAGCTCATTT
1 CAGCTCAATT
79218876 CAGCTCAA-T
1 CAGCTCAATT
*
79218885 CGAGCTCTATT
1 C-AGCTCAATT
*
79218896 TAGCTACAATT
1 CAGCT-CAATT
79218907 CAGCTCA
1 CAGCTCA
79218914 TTTATTTTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
9 2 0.05
10 26 0.70
11 9 0.24
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:79218879 original size:20 final size:20
Alignment explanation
Indices: 79218856--79218916 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
79218846 CAACTCCGAC
79218856 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
79218876 CAGCTCAATCGAGCTCTATTT
1 CAGCTCAATTGAGCTC-ATTT
*
79218897 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
79218917 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:79222999 original size:27 final size:26
Alignment explanation
Indices: 79222941--79223003 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
79222931 ATAGCTGAAT
*
79222941 TTTAATATGTCTTAGTTCATACATGT
1 TTTAATATGTCTTAGTTCATACATGA
* * *
79222967 TGTTAATTTGTCTTAGTTTATTGCATGA
1 T-TTAATATGTCTTAGTTCA-TACATGA
79222995 TTTAA-ATGT
1 TTTAATATGT
79223004 GTCTTTGAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.13
27 20 0.67
28 6 0.20
ACGTcount: A:0.25, C:0.08, G:0.14, T:0.52
Consensus pattern (26 bp):
TTTAATATGTCTTAGTTCATACATGA
Found at i:79223090 original size:18 final size:20
Alignment explanation
Indices: 79223052--79223093 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
79223042 GTATAACTGA
*
79223052 ATTTATTGTGTCTCAATTTG
1 ATTTAATGTGTCTCAATTTG
79223072 ATTTAATGTGT-TC-ATTTG
1 ATTTAATGTGTCTCAATTTG
79223090 ATTT
1 ATTT
79223094 GTGCAGTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 2 0.10
20 10 0.48
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.57
Consensus pattern (20 bp):
ATTTAATGTGTCTCAATTTG
Found at i:79223757 original size:14 final size:14
Alignment explanation
Indices: 79223710--79223757 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
79223700 GTACGAATGG
*
79223710 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
79223724 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
79223738 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
79223752 ATTGGT
1 AATGGT
79223758 CGGTTTAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:79229724 original size:13 final size:13
Alignment explanation
Indices: 79229704--79229739 Score: 65
Period size: 12 Copynumber: 2.8 Consensus size: 13
79229694 AACCGTATGC
79229704 AATTTTTTTTTC-
1 AATTTTTTTTTCA
79229716 AATTTTTTTTTCA
1 AATTTTTTTTTCA
79229729 AATTTTTTTTT
1 AATTTTTTTTT
79229740 TGAACTCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (13 bp):
AATTTTTTTTTCA
Found at i:79230080 original size:21 final size:21
Alignment explanation
Indices: 79230054--79230116 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
79230044 TTGGTATTTG
79230054 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
79230075 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
79230096 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
79230117 ACGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:79235901 original size:24 final size:24
Alignment explanation
Indices: 79235874--79235942 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
79235864 AAAAAAAAGA
*
79235874 AACCAGCAGCTCATTAAATTCATC
1 AACCAGCAGCTCATTAAATCCATC
*
79235898 AACCAGTAGCTCATTAAATCCATC
1 AACCAGCAGCTCATTAAATCCATC
79235922 AACCAGCAGCTCATTAAATCC
1 AACCAGCAGCTCATTAAATCC
79235943 GTCCAGGCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.38, C:0.30, G:0.09, T:0.23
Consensus pattern (24 bp):
AACCAGCAGCTCATTAAATCCATC
Found at i:79239543 original size:46 final size:46
Alignment explanation
Indices: 79239476--79239645 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
79239466 AACCCGCCCC
* *
79239476 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
79239522 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * ** *
79239570 TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
79239615 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
79239646 AGATGCTCAA
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 56 0.56
47 26 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:79239589 original size:93 final size:93
Alignment explanation
Indices: 79239481--79239651 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
79239471 GCCCCTAAGT
* ** *
79239481 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79239546 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
* *
79239574 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79239639 CGAGTTCAGATGC
66 CGAGTTCAGATGC
79239652 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:79243803 original size:16 final size:18
Alignment explanation
Indices: 79243782--79243820 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
79243772 AAATCAGTCA
*
79243782 AAAAAGTCAAAA-T-AAT
1 AAAAAGACAAAATTCAAT
79243798 AAAAAGACAAAATTCAAT
1 AAAAAGACAAAATTCAAT
79243816 AAAAA
1 AAAAA
79243821 TTTAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 1 0.05
18 8 0.40
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (18 bp):
AAAAAGACAAAATTCAAT
Found at i:79248674 original size:56 final size:56
Alignment explanation
Indices: 79248569--79248675 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
79248559 ATTAATGCCG
* * * * *
79248569 TCCATGCATGGTGAATATCTCATTTAATTCATGTTTTGCTTCCCTTTAAATGTCGT
1 TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGTCGT
79248625 TCCATACATGG-GAACATCTCATTTAATTCATGTCTTTGCTGCACATTAAAT
1 TCCATACATGGTGAACATCTCATTTAATTCATGT-TTTGCTGCACATTAAAT
79248676 CAGCAAGCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 21 0.47
56 24 0.53
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (56 bp):
TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGTCGT
Found at i:79249324 original size:20 final size:20
Alignment explanation
Indices: 79249299--79249353 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
79249289 ACGAGTTAAA
* *
79249299 TTGAGCTTGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTAAC
*
79249319 TTGAGCACGAATGAGCTAAC
1 TTGAGCTCGAATGAGCTAAC
79249339 TTGAGCTCGAATGAG
1 TTGAGCTCGAATGAG
79249354 TTGAACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTAAC
Found at i:79251758 original size:26 final size:27
Alignment explanation
Indices: 79251721--79251772 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
79251711 CAATCACTCT
* *
79251721 TTTTTTTTAAATTTCG-ATTTTTTTTC
1 TTTTTTTAAAATTCCGAATTTTTTTTC
79251747 TTTTTTTAAAATTCCGAATTTTTTTT
1 TTTTTTTAAAATTCCGAATTTTTTTT
79251773 TCTTCATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.19, C:0.08, G:0.04, T:0.69
Consensus pattern (27 bp):
TTTTTTTAAAATTCCGAATTTTTTTTC
Found at i:79251784 original size:13 final size:13
Alignment explanation
Indices: 79251766--79251791 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79251756 AATTCCGAAT
79251766 TTTTTTTTCTTCA
1 TTTTTTTTCTTCA
79251779 TTTTTTTTCTTCA
1 TTTTTTTTCTTCA
79251792 ATACTAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTTTCTTCA
Found at i:79253230 original size:56 final size:55
Alignment explanation
Indices: 79253114--79253231 Score: 159
Period size: 55 Copynumber: 2.1 Consensus size: 55
79253104 TGCATGCTTT
* * * *
79253114 CATT-AATGCTGTCCATGCATGGTGAATATCTCATTTAATTCATGTTTTGCTTCC
1 CATTAAATGCTGTCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCA
*
79253168 CTTTAAATGCTGTTCCATACATGG-GAACATCTCATTTAATTCATGTCTTTGCTGCA
1 CATTAAATGCTG-TCCATACATGGTGAACATCTCATTTAATTCATGT-TTTGCTGCA
79253224 CATTAAAT
1 CATTAAAT
79253232 CAGCAAGCAG
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
54 3 0.05
55 28 0.51
56 24 0.44
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (55 bp):
CATTAAATGCTGTCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCA
Found at i:79253880 original size:20 final size:20
Alignment explanation
Indices: 79253855--79253909 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
79253845 ACGAGTTAAA
*
79253855 TTGAGCTTGAATGAGCTGAC
1 TTGAGCTTGAATGAGCTAAC
*
79253875 TTGAGCATGAATGAGCTAAC
1 TTGAGCTTGAATGAGCTAAC
*
79253895 TTGAGCTCGAATGAG
1 TTGAGCTTGAATGAG
79253910 TTGAACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (20 bp):
TTGAGCTTGAATGAGCTAAC
Found at i:79256261 original size:12 final size:12
Alignment explanation
Indices: 79256246--79256276 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
79256236 TTCTTTTTGC
79256246 TTTTCAAAGGCT
1 TTTTCAAAGGCT
79256258 TTTTCAAAGGCT
1 TTTTCAAAGGCT
*
79256270 ATTTCAA
1 TTTTCAA
79256277 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:79257290 original size:17 final size:17
Alignment explanation
Indices: 79257256--79257294 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
79257246 CATTAAACAC
79257256 TTTTTTTTTCAAATTTT
1 TTTTTTTTTCAAATTTT
*
79257273 TTTTTCTTTTCGAATTTT
1 TTTTT-TTTTCAAATTTT
79257291 TTTT
1 TTTT
79257295 GAATTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTTTTTTCAAATTTT
Found at i:79260478 original size:30 final size:30
Alignment explanation
Indices: 79260444--79260540 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
79260434 AGCTCACTCC
79260444 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
79260474 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
79260504 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
79260534 TAGCTCA
1 TAGCTCA
79260541 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:79262096 original size:12 final size:13
Alignment explanation
Indices: 79262065--79262101 Score: 56
Period size: 13 Copynumber: 2.7 Consensus size: 13
79262055 GTTCGTAACG
79262065 AAAAAAAAGGAAATC
1 AAAAAAAA--AAATC
79262080 AAAAAAAAAAATC
1 AAAAAAAAAAATC
79262093 AAAAAAAAA
1 AAAAAAAAA
79262102 TTTTTTGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 14 0.64
15 8 0.36
ACGTcount: A:0.84, C:0.05, G:0.05, T:0.05
Consensus pattern (13 bp):
AAAAAAAAAAATC
Found at i:79262207 original size:21 final size:21
Alignment explanation
Indices: 79262168--79262227 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
79262158 ATTGGATTTA
* *
79262168 AAAAAAAAAGAGAAGAAATTC-
1 AAAAAAAAAGA-AAAAAAATCG
*
79262189 AAAAAAAAATAAAAAAAATCG
1 AAAAAAAAAGAAAAAAAATCG
*
79262210 AAAAAAAAGGAAAAAAAA
1 AAAAAAAAAGAAAAAAAA
79262228 AGTGAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 7 0.21
21 26 0.79
ACGTcount: A:0.80, C:0.03, G:0.10, T:0.07
Consensus pattern (21 bp):
AAAAAAAAAGAAAAAAAATCG
Found at i:79262213 original size:11 final size:10
Alignment explanation
Indices: 79262190--79262240 Score: 59
Period size: 11 Copynumber: 4.9 Consensus size: 10
79262180 AAGAAATTCA
79262190 AAAAAAAAT-
1 AAAAAAAATG
79262199 AAAAAAAATCG
1 AAAAAAAAT-G
*
79262210 AAAAAAAAGG
1 AAAAAAAATG
79262220 AAAAAAAAAGTG
1 -AAAAAAAA-TG
79262232 AAAAAAAAT
1 AAAAAAAAT
79262241 CGAGTTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
9 9 0.25
10 2 0.06
11 24 0.67
12 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.10, T:0.08
Consensus pattern (10 bp):
AAAAAAAATG
Found at i:79264100 original size:37 final size:37
Alignment explanation
Indices: 79264049--79264119 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
79264039 CATTCTTGTA
79264049 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
79264086 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAA
79264120 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:79264119 original size:6 final size:6
Alignment explanation
Indices: 79264059--79264108 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
79264049 AAGAGAAAAC
*
79264059 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
79264108 A
1 A
79264109 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:79266404 original size:30 final size:30
Alignment explanation
Indices: 79266368--79266464 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
79266358 ATCTCACTCC
79266368 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
79266398 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
79266428 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
79266458 TAGCTCA
1 TAGCTCA
79266465 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:79268836 original size:30 final size:30
Alignment explanation
Indices: 79268802--79268898 Score: 72
Period size: 30 Copynumber: 3.2 Consensus size: 30
79268792 TAAACTAAAA
79268802 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * * *
79268832 TGAGCTGAGGC-TAAACTCCTAATCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* * *
79268862 TGAACTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
79268892 TGAGCTA
1 TGAGCTA
79268899 GGAGTGAGCT
Statistics
Matches: 46, Mismatches: 18, Indels: 6
0.66 0.26 0.09
Matches are distributed among these distances:
29 2 0.04
30 38 0.83
31 6 0.13
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:79269828 original size:40 final size:40
Alignment explanation
Indices: 79269772--79269850 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
79269762 TTAATTTATT
*
79269772 TAAACTCATCTTAGTTAATAATTGAGTTGCTGGACTTTAA
1 TAAACTCATCTCAGTTAATAATTGAGTTGCTGGACTTTAA
* * *
79269812 TAAACTTATCTCAGTTAATTATTGATTTGCTGGACTTTA
1 TAAACTCATCTCAGTTAATAATTGAGTTGCTGGACTTTA
79269851 TTTTTATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (40 bp):
TAAACTCATCTCAGTTAATAATTGAGTTGCTGGACTTTAA
Found at i:79270053 original size:12 final size:11
Alignment explanation
Indices: 79270019--79270053 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
79270009 ATTAAGTTTA
*
79270019 GTGTGTTTAAT
1 GTGTTTTTAAT
79270030 GTGTTTTTAAT
1 GTGTTTTTAAT
79270041 GTGTTTGTTAAT
1 GTGTTT-TTAAT
79270053 G
1 G
79270054 CTTGTAGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.17, C:0.00, G:0.26, T:0.57
Consensus pattern (11 bp):
GTGTTTTTAAT
Found at i:79270254 original size:43 final size:43
Alignment explanation
Indices: 79270207--79270295 Score: 142
Period size: 43 Copynumber: 2.1 Consensus size: 43
79270197 TATGAACAAA
* *
79270207 ATTGCTAGTGTCTATTCGGCTGCCAAGAGGGAATTTAAAGCTT
1 ATTGCTAGTGTCTATTCGGCTGCCAAGAGAGAATTTAAAACTT
* *
79270250 ATTGCTTGTGTCTATTTGGCTGCCAAGAGAGAATTTAAAACTT
1 ATTGCTAGTGTCTATTCGGCTGCCAAGAGAGAATTTAAAACTT
79270293 ATT
1 ATT
79270296 CTAAAAACTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (43 bp):
ATTGCTAGTGTCTATTCGGCTGCCAAGAGAGAATTTAAAACTT
Found at i:79271186 original size:12 final size:11
Alignment explanation
Indices: 79271160--79271208 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
79271150 CTCCCATGCT
79271160 AGGAAACTTCA
1 AGGAAACTTCA
*
79271171 AGGAAGCTTCCA
1 AGGAAACTT-CA
79271183 AGG--ACGTTCA
1 AGGAAAC-TTCA
79271193 A-GAAACTTCA
1 AGGAAACTTCA
79271203 AGGAAA
1 AGGAAA
79271209 TTTCTAGCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
9 1 0.03
10 9 0.29
11 16 0.52
12 5 0.16
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.16
Consensus pattern (11 bp):
AGGAAACTTCA
Found at i:79271192 original size:22 final size:20
Alignment explanation
Indices: 79271167--79271206 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
79271157 GCTAGGAAAC
*
79271167 TTCAAGGAAGCTTCCAAGGACG
1 TTCAA-GAAACTT-CAAGGACG
79271189 TTCAAGAAACTTCAAGGA
1 TTCAAGAAACTTCAAGGA
79271207 AATTTCTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 6 0.35
22 5 0.29
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (20 bp):
TTCAAGAAACTTCAAGGACG
Found at i:79271278 original size:27 final size:27
Alignment explanation
Indices: 79271243--79271294 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
79271233 TTGCTGTCCA
*
79271243 TTCATCACCCTTAATTGCCTATTCGAC
1 TTCAGCACCCTTAATTGCCTATTCGAC
79271270 TTCAGCACCCTTAATTGCCTATTCG
1 TTCAGCACCCTTAATTGCCTATTCG
79271295 GCTATCCCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.37
Consensus pattern (27 bp):
TTCAGCACCCTTAATTGCCTATTCGAC
Found at i:79272006 original size:17 final size:19
Alignment explanation
Indices: 79271986--79272022 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
79271976 CATGATATTG
79271986 TAAAAAAA-T-TTGAAGTT
1 TAAAAAAAGTGTTGAAGTT
79272003 TAAAAAAAGTGTTGAAGTT
1 TAAAAAAAGTGTTGAAGTT
79272022 T
1 T
79272023 TGTATTCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 1 0.06
19 9 0.50
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (19 bp):
TAAAAAAAGTGTTGAAGTT
Found at i:79273647 original size:20 final size:20
Alignment explanation
Indices: 79273594--79273647 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
79273584 GCTGAAAGTA
*
79273594 AGCTCAGTTGAGCTCAAACG
1 AGCTGAGTTGAGCTCAAACG
**** *
79273614 AGCTGAAACAAGCTCAAATG
1 AGCTGAGTTGAGCTCAAACG
79273634 AGCTGAGTTGAGCT
1 AGCTGAGTTGAGCT
79273648 GGACGGTGCT
Statistics
Matches: 24, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.20
Consensus pattern (20 bp):
AGCTGAGTTGAGCTCAAACG
Found at i:79275318 original size:11 final size:12
Alignment explanation
Indices: 79275288--79275319 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
79275278 TTTCACTCTT
79275288 CTCTTTTTCAAA
1 CTCTTTTTCAAA
79275300 CTCTTTTTCAAA
1 CTCTTTTTCAAA
*
79275312 TTCTTTTT
1 CTCTTTTT
79275320 TCGCTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (12 bp):
CTCTTTTTCAAA
Found at i:79275331 original size:27 final size:27
Alignment explanation
Indices: 79275301--79275362 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
79275291 TTTTTCAAAC
*
79275301 TCTTTTTCAAATTCTT-TTTTC-GCTTTT
1 TCTTTTTC-AATT-TTCTTTTCTGCATTT
*
79275328 TCTTTTTCAATTTTCTTTTCTTCATTT
1 TCTTTTTCAATTTTCTTTTCTGCATTT
79275355 TCTTTTTC
1 TCTTTTTC
79275363 TCTCACTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 9 0.29
27 20 0.65
ACGTcount: A:0.10, C:0.19, G:0.02, T:0.69
Consensus pattern (27 bp):
TCTTTTTCAATTTTCTTTTCTGCATTT
Found at i:79275354 original size:14 final size:14
Alignment explanation
Indices: 79275303--79275361 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
79275293 TTTCAAACTC
*
79275303 TTTTTCAA-ATTCT
1 TTTTTCAATTTTCT
**
79275316 TTTTTCGCTTTT-T
1 TTTTTCAATTTTCT
79275329 CTTTTTCAATTTTCT
1 -TTTTTCAATTTTCT
79275344 TTTCTTC-ATTTTCT
1 TTT-TTCAATTTTCT
79275358 TTTT
1 TTTT
79275362 CTCTCACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
13 8 0.22
14 25 0.68
15 4 0.11
ACGTcount: A:0.10, C:0.17, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTTCAATTTTCT
Found at i:79275424 original size:6 final size:6
Alignment explanation
Indices: 79275323--79275411 Score: 56
Period size: 6 Copynumber: 14.7 Consensus size: 6
79275313 TCTTTTTTCG
* * * **
79275323 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
** * *
79275374 -GATTT CTTTTT CTTTTT CGTTTT CTTTTT -GTTTT CTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
79275412 CAATTTCTTT
Statistics
Matches: 60, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
5 7 0.12
6 41 0.68
7 9 0.15
8 3 0.05
ACGTcount: A:0.06, C:0.18, G:0.03, T:0.73
Consensus pattern (6 bp):
CTTTTT
Found at i:79276614 original size:12 final size:12
Alignment explanation
Indices: 79276599--79276630 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
79276589 CCAACTCAAA
79276599 TTTTTTTTTGA-
1 TTTTTTTTTGAC
79276610 TTTTTTTTTGAC
1 TTTTTTTTTGAC
79276622 TTTTTTTTT
1 TTTTTTTTT
79276631 ACATTACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.84
Consensus pattern (12 bp):
TTTTTTTTTGAC
Found at i:79278095 original size:20 final size:20
Alignment explanation
Indices: 79278042--79278095 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
79278032 GCTGAAAGTA
*
79278042 AGCTCAGTTGAGCTCAAACG
1 AGCTGAGTTGAGCTCAAACG
**** *
79278062 AGCTGAAACAAGCTCAAATG
1 AGCTGAGTTGAGCTCAAACG
79278082 AGCTGAGTTGAGCT
1 AGCTGAGTTGAGCT
79278096 GGACGGTGCT
Statistics
Matches: 24, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.20
Consensus pattern (20 bp):
AGCTGAGTTGAGCTCAAACG
Done.