Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 242 of 356
Found at i:79572972 original size:15 final size:16
Alignment explanation
Indices: 79572952--79572983 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
79572942 AGAAAATGAA
79572952 AAAGAAAAAGAA-ATG
1 AAAGAAAAAGAAGATG
79572967 AAAGAAAAAGAAGATG
1 AAAGAAAAAGAAGATG
79572983 A
1 A
79572984 GTGTGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAGATG
Found at i:79573098 original size:17 final size:18
Alignment explanation
Indices: 79573066--79573099 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79573056 AAAAGAGAGT
*
79573066 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
79573084 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
79573100 GGAGTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:79574388 original size:20 final size:20
Alignment explanation
Indices: 79574365--79574418 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
79574355 AGTTTTTCCC
*
79574365 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
79574385 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
79574405 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
79574419 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:79574400 original size:30 final size:30
Alignment explanation
Indices: 79574365--79574438 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
79574355 AGTTTTTCCC
79574365 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
79574395 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
79574425 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
79574439 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:79574428 original size:20 final size:20
Alignment explanation
Indices: 79574365--79574429 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
79574355 AGTTTTTCCC
* * * *
79574365 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
79574385 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
79574404 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
79574425 AGCTC
1 AGCTC
79574430 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:79581372 original size:20 final size:20
Alignment explanation
Indices: 79581349--79581395 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
79581339 GGGTTTAGAT
**
79581349 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCAAG
* *
79581369 TGAGTTGACTTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
79581389 TGAGCTG
1 TGAGCTG
79581396 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:79582839 original size:19 final size:19
Alignment explanation
Indices: 79582815--79582854 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
79582805 AGCTCCCATG
79582815 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
79582834 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
79582853 TA
1 TA
79582855 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:79586002 original size:11 final size:11
Alignment explanation
Indices: 79585986--79586035 Score: 66
Period size: 11 Copynumber: 4.6 Consensus size: 11
79585976 TATACAAGTT
79585986 AAAAAAAATCA
1 AAAAAAAATCA
**
79585997 AAAAAAAATTG
1 AAAAAAAATCA
79586008 AAAAAAAAT-A
1 AAAAAAAATCA
*
79586018 AAAAAAAATCG
1 AAAAAAAATCA
79586029 AAAAAAA
1 AAAAAAA
79586036 GAGTGATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 9 0.26
11 25 0.74
ACGTcount: A:0.82, C:0.04, G:0.04, T:0.10
Consensus pattern (11 bp):
AAAAAAAATCA
Found at i:79586011 original size:21 final size:21
Alignment explanation
Indices: 79585986--79586035 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
79585976 TATACAAGTT
*
79585986 AAAAAAAATCAAAAAAAAATTG
1 AAAAAAAAT-AAAAAAAAATCG
79586008 AAAAAAAATAAAAAAAAATCG
1 AAAAAAAATAAAAAAAAATCG
79586029 AAAAAAA
1 AAAAAAA
79586036 GAGTGATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.82, C:0.04, G:0.04, T:0.10
Consensus pattern (21 bp):
AAAAAAAATAAAAAAAAATCG
Found at i:79593668 original size:13 final size:13
Alignment explanation
Indices: 79593650--79593674 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79593640 AGGTCATCAT
79593650 GGTGTGAACACAA
1 GGTGTGAACACAA
79593663 GGTGTGAACACA
1 GGTGTGAACACA
79593675 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:79594187 original size:10 final size:10
Alignment explanation
Indices: 79594174--79594211 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
79594164 TTGTAGCTAA
79594174 ATTGAGCTCG
1 ATTGAGCTCG
79594184 ATTGAGCT-G
1 ATTGAGCTCG
79594193 ACTTGAGCTCG
1 A-TTGAGCTCG
*
79594204 AGTGAGCT
1 ATTGAGCT
79594212 GGAAACGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (10 bp):
ATTGAGCTCG
Found at i:79594191 original size:20 final size:20
Alignment explanation
Indices: 79594151--79594211 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
79594141 ACCAATAAAA
79594151 TAAA-TGAGCT-GAATTGTAGC
1 TAAATTGAGCTCG-ATTG-AGC
79594171 TAAATTGAGCTCGATTGAGC
1 TAAATTGAGCTCGATTGAGC
* * *
79594191 TGACTTGAGCTCGAGTGAGC
1 TAAATTGAGCTCGATTGAGC
79594211 T
1 T
79594212 GGAAACGAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 25 0.69
21 10 0.28
22 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (20 bp):
TAAATTGAGCTCGATTGAGC
Found at i:79594212 original size:20 final size:20
Alignment explanation
Indices: 79594175--79594212 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
79594165 TGTAGCTAAA
*
79594175 TTGAGCTCGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
79594195 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
79594213 GAAACGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:79597013 original size:12 final size:13
Alignment explanation
Indices: 79596986--79597033 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 13
79596976 TATGCAATTT
79596986 TTTTTCTTTTCAAA
1 TTTTT-TTTTCAAA
79597000 TTTTTTTTTC-AA
1 TTTTTTTTTCAAA
*
79597012 TTTTTTTTTCGAAC
1 TTTTTTTTTC-AAA
79597026 TTTTTTTT
1 TTTTTTTT
79597034 ACGTACCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 12 0.39
13 5 0.16
14 14 0.45
ACGTcount: A:0.15, C:0.10, G:0.02, T:0.73
Consensus pattern (13 bp):
TTTTTTTTTCAAA
Found at i:79598410 original size:24 final size:23
Alignment explanation
Indices: 79598374--79598427 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
79598364 ATTAAGACCT
*
79598374 AATTAACTAATTTAACTAACAGCA
1 AATTAAATAATTTAA-TAACAGCA
* * **
79598398 AATTAAATGATTTTATTCCAGCA
1 AATTAAATAATTTAATAACAGCA
79598421 AATTAAA
1 AATTAAA
79598428 CGTAAAAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (23 bp):
AATTAAATAATTTAATAACAGCA
Found at i:79598476 original size:10 final size:10
Alignment explanation
Indices: 79598461--79598487 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
79598451 TAAGTTGAAG
79598461 TTGAGCTGAT
1 TTGAGCTGAT
79598471 TTGAGCTGAT
1 TTGAGCTGAT
79598481 TTGAGCT
1 TTGAGCT
79598488 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:79601696 original size:13 final size:13
Alignment explanation
Indices: 79601678--79601702 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79601668 TGGTCATCAT
79601678 GGTGTGAACACAA
1 GGTGTGAACACAA
79601691 GGTGTGAACACA
1 GGTGTGAACACA
79601703 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:79602205 original size:30 final size:30
Alignment explanation
Indices: 79602107--79602207 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
79602097 AGTTTAAACT
*
79602107 AAAATGAGCTAAGCTTTAGCTCGTGAGCT-
1 AAAATGAGCTAAGGTTTAGCTCGTGAGCTG
* * * * * * *
79602136 AAAGTTGAGCTGAGGCTAAACTCCTAAGCTG
1 AAA-ATGAGCTAAGGTTTAGCTCGTGAGCTG
** *
79602167 AAGTTGAGCTAAGGTTTAGCTCGTGAGTTG
1 AAAATGAGCTAAGGTTTAGCTCGTGAGCTG
79602197 AAAATGAGCTA
1 AAAATGAGCTA
79602208 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 18, Indels: 3
0.71 0.25 0.04
Matches are distributed among these distances:
29 3 0.06
30 47 0.90
31 2 0.04
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (30 bp):
AAAATGAGCTAAGGTTTAGCTCGTGAGCTG
Found at i:79611014 original size:20 final size:21
Alignment explanation
Indices: 79610972--79611016 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
79610962 AGCTCCGTCC
* *
79610972 AGCTCAAATCCAGCTTATTTG
1 AGCTCAAATCCAACTTATCTG
*
79610993 AGCTC-AATCCAACTTGTCTG
1 AGCTCAAATCCAACTTATCTG
79611013 AGCT
1 AGCT
79611017 AAACCGAGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (21 bp):
AGCTCAAATCCAACTTATCTG
Found at i:79611128 original size:30 final size:30
Alignment explanation
Indices: 79611052--79611137 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
79611042 TTCAGCTCAC
79611052 GAGCTAAACCTTAGCTCAACTTTAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTTAG
* *
79611082 GAG-TATAATCTCAGCTCAACTTTAGCTTAAG
1 GAGCTA-AACCTTAGCTCAACTTTAGCTT-AG
* *
79611113 G-GCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
79611138 CAAACCCGAT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
29 10 0.21
30 33 0.69
31 5 0.10
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTTAG
Found at i:79615750 original size:14 final size:14
Alignment explanation
Indices: 79615728--79615772 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
79615718 TTAAAGAAGC
79615728 AACTCATTAAATTA
1 AACTCATTAAATTA
*
79615742 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
79615755 AACTCATTTAATTA
1 AACTCATTAAATTA
79615769 AACT
1 AACT
79615773 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:79615810 original size:22 final size:22
Alignment explanation
Indices: 79615784--79615853 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
79615774 AGATGAGTTG
79615784 TATTAATGACCAGCAACTCATT
1 TATTAATGACCAGCAACTCATT
* *
79615806 TATTAA--ACTA--AGA-TGAGTT
1 TATTAATGACCAGCA-ACTCA-TT
79615825 GTATTAATGACCAGCAACTCATT
1 -TATTAATGACCAGCAACTCATT
79615848 TATTAA
1 TATTAA
79615854 ACTAAGAGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 9 0.25
22 15 0.42
23 3 0.08
24 3 0.08
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (22 bp):
TATTAATGACCAGCAACTCATT
Found at i:79615816 original size:42 final size:42
Alignment explanation
Indices: 79615755--79615860 Score: 203
Period size: 42 Copynumber: 2.5 Consensus size: 42
79615745 TCATTAAATA
79615755 AACTCATTTAATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTT-ATTAAACTAAGATGAGTTGTATTAATGACCAGC
79615798 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
79615840 AACTCATTTATTAAACTAAGA
1 AACTCATTTATTAAACTAAGA
79615861 GGCTTAAATG
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 54 0.86
43 9 0.14
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (42 bp):
AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
Found at i:79627524 original size:30 final size:29
Alignment explanation
Indices: 79627430--79627526 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 29
79627420 TTAAACAAAA
*
79627430 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
* * * * * * *
79627460 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCT-AAAT
79627490 TGAGCTAAGGTTTAGCTCGTGAGCTAAAT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAT
79627519 ATGAGCTA
1 -TGAGCTA
79627527 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
29 3 0.06
30 45 0.90
31 2 0.04
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (29 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAT
Found at i:79628081 original size:14 final size:14
Alignment explanation
Indices: 79628059--79628103 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
79628049 TTAAAGAAGC
79628059 AACTCATTAAATTA
1 AACTCATTAAATTA
*
79628073 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
79628086 AACTCATTTAATTA
1 AACTCATTAAATTA
79628100 AACT
1 AACT
79628104 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:79629343 original size:30 final size:30
Alignment explanation
Indices: 79629248--79629344 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
79629238 AGCTCACTCC
* * *
79629248 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGGTAAAGCT
* * * **
79629278 TAGCTCAACTTCAGCTTAGGA-GTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGGTAAAG-CT
*
79629308 CAGCTCAACTTTAGCTCACGAGGTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGGTAAAGCT
79629338 TAGCTCA
1 TAGCTCA
79629345 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 2 0.04
30 39 0.80
31 8 0.16
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGGTAAAGCT
Found at i:79635871 original size:11 final size:11
Alignment explanation
Indices: 79635855--79635892 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
79635845 TATACAAGTA
79635855 AAAAAAATTCG
1 AAAAAAATTCG
*
79635866 AAAAAAATTCAA
1 AAAAAAATTC-G
79635878 AAAAAAATTCG
1 AAAAAAATTCG
79635889 AAAA
1 AAAA
79635893 GAAAAAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.71, C:0.08, G:0.05, T:0.16
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:79635871 original size:12 final size:12
Alignment explanation
Indices: 79635854--79635897 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
79635844 TTATACAAGT
79635854 AAAAAAAATTCG
1 AAAAAAAATTCG
*
79635866 -AAAAAAATTCA
1 AAAAAAAATTCG
79635877 AAAAAAAATTCG
1 AAAAAAAATTCG
79635889 AAAAGAAAA
1 AAAA-AAAA
79635898 AAATCTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 10 0.36
12 14 0.50
13 4 0.14
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:79636832 original size:9 final size:10
Alignment explanation
Indices: 79636818--79636881 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 10
79636808 TCTTATAAAG
79636818 AGAAAAG-AA
1 AGAAAAGAAA
79636827 AGAAAAGAAA
1 AGAAAAGAAA
79636837 AGAAAAAGCAAA
1 AG-AAAAG-AAA
**
79636849 AGATGA-AAA
1 AGAAAAGAAA
79636858 AGAAAATGAAA
1 AGAAAA-GAAA
79636869 TA-AAAAGAAA
1 -AGAAAAGAAA
79636879 AGA
1 AGA
79636882 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
9 15 0.34
10 9 0.20
11 14 0.32
12 6 0.14
ACGTcount: A:0.75, C:0.02, G:0.19, T:0.05
Consensus pattern (10 bp):
AGAAAAGAAA
Found at i:79636849 original size:6 final size:5
Alignment explanation
Indices: 79636818--79636881 Score: 53
Period size: 5 Copynumber: 12.6 Consensus size: 5
79636808 TCTTATAAAG
**
79636818 AGAAA AG-AA AGAAA AGAAA AGAAAA AGCAAA AGATG A-AAA AGAAA ATGAAA
1 AGAAA AGAAA AGAAA AGAAA AG-AAA AG-AAA AGAAA AGAAA AGAAA A-GAAA
79636869 TA-AAA AGAAA AGA
1 -AGAAA AGAAA AGA
79636882 GAGGCAAGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
4 7 0.15
5 26 0.54
6 14 0.29
7 1 0.02
ACGTcount: A:0.75, C:0.02, G:0.19, T:0.05
Consensus pattern (5 bp):
AGAAA
Found at i:79636961 original size:11 final size:12
Alignment explanation
Indices: 79636932--79636959 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
79636922 AGAGAACTTA
79636932 AAAAAGCCTTTG
1 AAAAAGCCTTTG
79636944 AAAAAGCCTTTG
1 AAAAAGCCTTTG
79636956 AAAA
1 AAAA
79636960 GCAAAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21
Consensus pattern (12 bp):
AAAAAGCCTTTG
Found at i:79636970 original size:12 final size:12
Alignment explanation
Indices: 79636962--79636986 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79636952 TTTGAAAAGC
79636962 AAAAAGAAAATG
1 AAAAAGAAAATG
79636974 AAAAAGAAAATG
1 AAAAAGAAAATG
79636986 A
1 A
79636987 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:79636983 original size:18 final size:18
Alignment explanation
Indices: 79636956--79637011 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
79636946 AAAGCCTTTG
79636956 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
79636975 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
79636993 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
79637010 AA
1 AA
79637012 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:79636996 original size:30 final size:31
Alignment explanation
Indices: 79636962--79637043 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
79636952 TTTGAAAAGC
*
79636962 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
79636992 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
79637022 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
79637044 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:79646030 original size:13 final size:12
Alignment explanation
Indices: 79645999--79646088 Score: 63
Period size: 13 Copynumber: 6.7 Consensus size: 12
79645989 GGTCACCTTT
79645999 TTTTTTTTTGCTCGA
1 TTTTTTTTT--TC-A
79646014 TTTTTTTTTTCA
1 TTTTTTTTTTCA
*
79646026 CTTTTTTTTTTGAA
1 -TTTTTTTTTT-CA
79646040 TTTTTTTTTCAATCA
1 TTTTTTTTT---TCA
*
79646055 ATTTTTTTTTCGAA
1 TTTTTTTTTTC--A
*
79646069 TTTTTTTTTTGA
1 TTTTTTTTTTCA
79646081 TTTTTTTT
1 TTTTTTTT
79646089 GTTACTCCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
12 12 0.19
13 21 0.33
14 11 0.17
15 18 0.29
16 1 0.02
ACGTcount: A:0.12, C:0.08, G:0.06, T:0.74
Consensus pattern (12 bp):
TTTTTTTTTTCA
Found at i:79646046 original size:29 final size:29
Alignment explanation
Indices: 79646014--79646078 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
79646004 TTTTGCTCGA
* *
79646014 TTTTTTTTT--TCACTTTTTTTTTTGAAT
1 TTTTTTTTTAATCAATTTTTTTTTCGAAT
*
79646041 TTTTTTTTCAATCAATTTTTTTTTCGAAT
1 TTTTTTTTTAATCAATTTTTTTTTCGAAT
79646070 TTTTTTTTT
1 TTTTTTTTT
79646079 GATTTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 8 0.25
29 24 0.75
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.75
Consensus pattern (29 bp):
TTTTTTTTTAATCAATTTTTTTTTCGAAT
Found at i:79646083 original size:12 final size:12
Alignment explanation
Indices: 79646012--79646088 Score: 64
Period size: 13 Copynumber: 5.8 Consensus size: 12
79646002 TTTTTTGCTC
79646012 GATTTTTTTTTT
1 GATTTTTTTTTT
*
79646024 CACTTTTTTTTTT
1 GA-TTTTTTTTTT
79646037 GAATTTTTTTTTCAAT
1 G-ATTTTTTTTT---T
* *
79646053 CAATTTTTTTTTC
1 -GATTTTTTTTTT
79646066 GAATTTTTTTTTT
1 G-ATTTTTTTTTT
79646079 GATTTTTTTT
1 GATTTTTTTT
79646089 GTTACTCCAA
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
12 10 0.19
13 30 0.58
14 1 0.02
16 11 0.21
ACGTcount: A:0.14, C:0.06, G:0.05, T:0.74
Consensus pattern (12 bp):
GATTTTTTTTTT
Found at i:79646088 original size:29 final size:29
Alignment explanation
Indices: 79645996--79646088 Score: 77
Period size: 28 Copynumber: 3.3 Consensus size: 29
79645986 TTTGGTCACC
*
79645996 TTTTTTTTTTTTGCTCG-ATTTTTTTTTTCA
1 TTTTTTTTTTTT--TCGAATTTTTTTTTTAA
* *
79646026 --CTTTTTTTTTT-GAATTTTTTTTTCAA
1 TTTTTTTTTTTTTCGAATTTTTTTTTTAA
*** *
79646052 TCAATTTTTTTTTCGAATTTTTTTTTTGA
1 TTTTTTTTTTTTTCGAATTTTTTTTTTAA
79646081 TTTTTTTT
1 TTTTTTTT
79646089 GTTACTCCAA
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
25 1 0.02
26 12 0.24
28 18 0.37
29 18 0.37
ACGTcount: A:0.12, C:0.08, G:0.05, T:0.75
Consensus pattern (29 bp):
TTTTTTTTTTTTTCGAATTTTTTTTTTAA
Found at i:79654072 original size:10 final size:10
Alignment explanation
Indices: 79654057--79654118 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
79654047 TTTGAACCGT
*
79654057 TACCAATTCG
1 TACCAATTCA
*
79654067 TACCAAATACCA
1 TACC-AAT-TCA
*
79654079 TACCATTTCA
1 TACCAATTCA
79654089 TACCAATTCCA
1 TACCAATT-CA
* *
79654100 TACCATTTCG
1 TACCAATTCA
79654110 TACCAATTC
1 TACCAATTC
79654119 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:79654102 original size:21 final size:21
Alignment explanation
Indices: 79654057--79654119 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
79654047 TTTGAACCGT
* *
79654057 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
79654079 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
79654100 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
79654120 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:79659181 original size:30 final size:30
Alignment explanation
Indices: 79659147--79659243 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
79659137 TAAACTAAAA
*
79659147 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
79659177 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
79659207 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
79659236 ATGAGCTA
1 -TGAGCTA
79659244 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:79659749 original size:20 final size:20
Alignment explanation
Indices: 79659724--79659769 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
79659714 GCTCGTTTCT
79659724 AGCTCACTCGAGCTCAAGTC
1 AGCTCACTCGAGCTCAAGTC
* *
79659744 AGCTCATTCGAGCTCAATTC
1 AGCTCACTCGAGCTCAAGTC
79659764 AGCTCA
1 AGCTCA
79659770 ATCTTAACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (20 bp):
AGCTCACTCGAGCTCAAGTC
Found at i:79659767 original size:10 final size:10
Alignment explanation
Indices: 79659734--79659771 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
79659724 AGCTCACTCG
*
79659734 AGCTCAAGTC
1 AGCTCAATTC
79659744 AGCTC-ATTC
1 AGCTCAATTC
79659753 GAGCTCAATTC
1 -AGCTCAATTC
79659764 AGCTCAAT
1 AGCTCAAT
79659772 CTTAACCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 3 0.12
10 18 0.72
11 4 0.16
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:79662924 original size:12 final size:12
Alignment explanation
Indices: 79662909--79662939 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
79662899 TTCTTTTTGC
79662909 TTTTCAAAGGCT
1 TTTTCAAAGGCT
79662921 TTTTCAAAGGCT
1 TTTTCAAAGGCT
79662933 TTTTCAA
1 TTTTCAA
79662940 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:79662997 original size:5 final size:5
Alignment explanation
Indices: 79662987--79663045 Score: 57
Period size: 5 Copynumber: 11.0 Consensus size: 5
79662977 CTCTTGCCTC
*
79662987 TCTTT TCTTT T-TATT TCATTT TCTTCT TCTCTT GCTTTT TCTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTT-T TCT-TT TC-TTT TCTTT TCTTT
79663036 TCTTT TCTTT
1 TCTTT TCTTT
79663046 GTTTTCTCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
4 1 0.02
5 29 0.63
6 13 0.28
7 3 0.07
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (5 bp):
TCTTT
Found at i:79664009 original size:11 final size:11
Alignment explanation
Indices: 79663995--79664030 Score: 56
Period size: 10 Copynumber: 3.3 Consensus size: 11
79663985 TTTTTTTTCC
79663995 TTTTTTTTG-A
1 TTTTTTTTGAA
79664005 TTTTTTTTGAA
1 TTTTTTTTGAA
79664016 TTTTTTTCTGAA
1 TTTTTTT-TGAA
79664028 TTT
1 TTT
79664031 CTTCTCCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 9 0.38
11 8 0.33
12 7 0.29
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.75
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:79664013 original size:10 final size:10
Alignment explanation
Indices: 79663970--79664022 Score: 52
Period size: 10 Copynumber: 4.9 Consensus size: 10
79663960 TTTTTAACTC
79663970 GATTTTTTTT
1 GATTTTTTTT
79663980 GTCACTTTTTTTT
1 G--A-TTTTTTTT
**
79663993 CCTTTTTTTT
1 GATTTTTTTT
79664003 GATTTTTTTT
1 GATTTTTTTT
79664013 GAATTTTTTT
1 G-ATTTTTTT
79664023 CTGAATTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 18 0.51
11 8 0.23
12 1 0.03
13 8 0.23
ACGTcount: A:0.09, C:0.08, G:0.08, T:0.75
Consensus pattern (10 bp):
GATTTTTTTT
Found at i:79664623 original size:30 final size:30
Alignment explanation
Indices: 79664589--79664685 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
79664579 AGCTCACTCC
79664589 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
79664619 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
79664649 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
79664679 TAGCTCA
1 TAGCTCA
79664686 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:79666609 original size:37 final size:37
Alignment explanation
Indices: 79666558--79666628 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
79666548 CATTCTTGTA
79666558 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
79666595 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAA
79666629 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:79666628 original size:6 final size:6
Alignment explanation
Indices: 79666568--79666617 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
79666558 AAGAGAAAAC
*
79666568 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
79666617 A
1 A
79666618 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:79668907 original size:30 final size:30
Alignment explanation
Indices: 79668873--79668969 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
79668863 AGCTCACTCC
79668873 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
79668903 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
79668933 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
79668963 TAGCTCA
1 TAGCTCA
79668970 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:79671738 original size:15 final size:14
Alignment explanation
Indices: 79671718--79671762 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
79671708 ATTTTCATCA
79671718 TTTTCTTTTATTTCT
1 TTTTCTTTT-TTTCT
*
79671733 TTTTCTTTTTCTCT
1 TTTTCTTTTTTTCT
79671747 TATTTCTTTTTTTCT
1 T-TTTCTTTTTTTCT
79671762 T
1 T
79671763 CTCTCAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 5 0.19
15 22 0.81
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTTTTTTCT
Found at i:79671744 original size:21 final size:21
Alignment explanation
Indices: 79671718--79671766 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
79671708 ATTTTCATCA
*
79671718 TTTTCTTTTATTTCTTTTTCT
1 TTTTCTCTTATTTCTTTTTCT
79671739 TTTTCTCTTATTTCTTTTT-T
1 TTTTCTCTTATTTCTTTTTCT
*
79671759 TCTTCTCT
1 TTTTCTCT
79671767 CAATTTCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTCTCTTATTTCTTTTTCT
Found at i:79671772 original size:21 final size:21
Alignment explanation
Indices: 79671727--79671773 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
79671717 ATTTTCTTTT
* *
79671727 ATTTCTTTTTCTTTTTCTCTT
1 ATTTCTTTTTCTTCTTCTCTA
79671748 ATTTCTTTTT-TTCTTCTCTCA
1 ATTTCTTTTTCTTCTTCTCT-A
79671769 ATTTC
1 ATTTC
79671774 ATTCAAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTCTTTTTCTTCTTCTCTA
Found at i:79672719 original size:22 final size:21
Alignment explanation
Indices: 79672694--79672740 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
79672684 TATACTTCGA
*
79672694 TTTTTCGATTTTTTTTAATTTT
1 TTTTTCGA-TTTTTTCAATTTT
79672716 TTTTTCGATTTTTTCAATTTT
1 TTTTTCGATTTTTTCAATTTT
79672737 TTTT
1 TTTT
79672741 CAAATTTCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.13, C:0.06, G:0.04, T:0.77
Consensus pattern (21 bp):
TTTTTCGATTTTTTCAATTTT
Found at i:79672747 original size:12 final size:11
Alignment explanation
Indices: 79672694--79672743 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
79672684 TATACTTCGA
*
79672694 TTTTTCGATTT
1 TTTTTCAATTT
79672705 TTTTT-AATTTT
1 TTTTTCAA-TTT
*
79672716 TTTTTCGA--T
1 TTTTTCAATTT
79672725 TTTTTCAATTT
1 TTTTTCAATTT
79672736 TTTTTCAA
1 TTTTTCAA
79672744 ATTTCCTCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
9 8 0.25
10 1 0.03
11 22 0.69
12 1 0.03
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.72
Consensus pattern (11 bp):
TTTTTCAATTT
Found at i:79673692 original size:30 final size:30
Alignment explanation
Indices: 79673658--79673754 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
79673648 TAAACTAAAA
*
79673658 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
79673688 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
79673718 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
79673747 ATGAGCTA
1 -TGAGCTA
79673755 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:79675280 original size:30 final size:30
Alignment explanation
Indices: 79675246--79675342 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
79675236 TAAACTAAAA
*
79675246 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
79675276 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
79675306 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
79675335 ATGAGCTA
1 -TGAGCTA
79675343 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:79676650 original size:30 final size:31
Alignment explanation
Indices: 79676616--79676712 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
79676606 AGCTCACTCC
*
79676616 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
79676646 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
79676676 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
79676706 TAGCTCA
1 TAGCTCA
79676713 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:79677547 original size:30 final size:30
Alignment explanation
Indices: 79677452--79677548 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 30
79677442 AGCTCACTCC
* *
79677452 TAGCTC-ACTTTCAACTCACGAGCTAAA-CTT
1 TAGCTCAACTTT-AGCTCAGGAGCTAAAGC-T
* * * **
79677482 TAGCTCAACTTCAGTTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCAGGAGCTAAAG-CT
*
79677512 CAGCTCAACTTTAGCTCAGGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCAGGAGCTAAAGCT
79677542 TAGCTCA
1 TAGCTCA
79677549 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 14, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
29 2 0.04
30 39 0.80
31 8 0.16
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCAGGAGCTAAAGCT
Found at i:79679968 original size:27 final size:27
Alignment explanation
Indices: 79679909--79679971 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
79679899 TCTACCCTAC
*
79679909 AGGGGTATTTCGATAATTTTACACTAT
1 AGGGGTATTTCGATAATTTTACACAAT
* *
79679936 AAGGGTATTTCGGTAATTTTACA-AACT
1 AGGGGTATTTCGATAATTTTACACAA-T
79679963 AGGGGTATT
1 AGGGGTATT
79679972 AACGACACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTCGATAATTTTACACAAT
Found at i:79686916 original size:11 final size:12
Alignment explanation
Indices: 79686886--79686918 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
79686876 TTTCACTCTT
79686886 CTCTTTTTCAAA
1 CTCTTTTTCAAA
79686898 CTCTTTTTCAAA
1 CTCTTTTTCAAA
*
79686910 TTCTTTTTC
1 CTCTTTTTC
79686919 GCTTTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.58
Consensus pattern (12 bp):
CTCTTTTTCAAA
Found at i:79686926 original size:13 final size:13
Alignment explanation
Indices: 79686899--79686956 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
79686889 TTTTTCAAAC
*
79686899 TCTTTTTCAA-AT
1 TCTTTTTCAATTT
**
79686911 TCTTTTTCGCTTT
1 TCTTTTTCAATTT
79686924 TCTTTTTCAATTT
1 TCTTTTTCAATTT
79686937 TCTTTTCTTC-ATTT
1 TC-TTT-TTCAATTT
79686951 TCTTTT
1 TCTTTT
79686957 CTCTCACTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
12 9 0.24
13 17 0.45
14 9 0.24
15 3 0.08
ACGTcount: A:0.10, C:0.19, G:0.02, T:0.69
Consensus pattern (13 bp):
TCTTTTTCAATTT
Found at i:79686952 original size:14 final size:15
Alignment explanation
Indices: 79686921--79686958 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
79686911 TCTTTTTCGC
79686921 TTTTC-TTT-TTCAA
1 TTTTCTTTTCTTCAA
79686934 TTTTCTTTTCTTC-A
1 TTTTCTTTTCTTCAA
79686948 TTTTCTTTTCT
1 TTTTCTTTTCT
79686959 CTCACTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.22
14 15 0.65
15 3 0.13
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTTTTCTTCAA
Found at i:79686984 original size:18 final size:18
Alignment explanation
Indices: 79686963--79687021 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
79686953 TTTTCTCTCA
*
79686963 CTTTTTTGATTTCTTTTT
1 CTTTTTAGATTTCTTTTT
* *
79686981 CTTTTGAAATTTCTTTTT
1 CTTTTTAGATTTCTTTTT
* *
79686999 CTTTTTCGTTTTCTTTTT
1 CTTTTTAGATTTCTTTTT
*
79687017 GTTTT
1 CTTTT
79687022 CTTTCAATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.75
Consensus pattern (18 bp):
CTTTTTAGATTTCTTTTT
Found at i:79687020 original size:11 final size:12
Alignment explanation
Indices: 79686910--79687025 Score: 60
Period size: 12 Copynumber: 9.5 Consensus size: 12
79686900 CTTTTTCAAA
79686910 TTCTTTTTCGCTT
1 TTCTTTTTCG-TT
*
79686923 TTCTTTTTCAATT
1 TTCTTTTTC-GTT
*
79686936 TTCTTTTCTTCATT
1 TTC-TTT-TTCGTT
79686950 TTC-TTTTC-TCT
1 TTCTTTTTCGT-T
** * *
79686961 CACTTTTTTGAT
1 TTCTTTTTCGTT
79686973 TTCTTTTTC-TT
1 TTCTTTTTCGTT
*** *
79686984 TTGAAATTTCTTT
1 TT-CTTTTTCGTT
79686997 TTCTTTTTCGTT
1 TTCTTTTTCGTT
79687009 TTCTTTTT-GTT
1 TTCTTTTTCGTT
79687020 TTCTTT
1 TTCTTT
79687026 CAATTTCTTT
Statistics
Matches: 79, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
10 1 0.01
11 17 0.22
12 31 0.39
13 18 0.23
14 9 0.11
15 3 0.04
ACGTcount: A:0.07, C:0.17, G:0.04, T:0.72
Consensus pattern (12 bp):
TTCTTTTTCGTT
Found at i:79688122 original size:12 final size:12
Alignment explanation
Indices: 79688107--79688131 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79688097 TTTTTTTTGA
79688107 TTTTTTTGAATT
1 TTTTTTTGAATT
79688119 TTTTTTTGAATT
1 TTTTTTTGAATT
79688131 T
1 T
79688132 ATTCTCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (12 bp):
TTTTTTTGAATT
Found at i:79688225 original size:11 final size:11
Alignment explanation
Indices: 79688209--79688237 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
79688199 CCAACTCAAA
79688209 TTTTTTTTGA-
1 TTTTTTTTGAC
79688219 TTTTTTTTGAC
1 TTTTTTTTGAC
79688230 TTTTTTTT
1 TTTTTTTT
79688238 ACATTACGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (11 bp):
TTTTTTTTGAC
Found at i:79690263 original size:17 final size:18
Alignment explanation
Indices: 79690241--79690281 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
79690231 CATTTCTTTT
79690241 TCTTTTGAATCACTC-TC
1 TCTTTTGAATCACTCATC
**
79690258 TCTTTTTTATCACTCATC
1 TCTTTTGAATCACTCATC
79690276 T-TTTTG
1 TCTTTTG
79690282 TTTTTCTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (18 bp):
TCTTTTGAATCACTCATC
Found at i:79705842 original size:43 final size:44
Alignment explanation
Indices: 79705793--79705945 Score: 165
Period size: 43 Copynumber: 3.5 Consensus size: 44
79705783 CCCAGATGTA
* * *
79705793 GTCTTACATGTAATCAAATATCGATGAC-ACTGTCCCAGACAGG
1 GTCTTACACGAAATCAAATATCGATGCCAACTGTCCCAGACAGG
* *
79705836 GTCTTACACGAAATCAAATAT-GATGCCGA-TGTCCCAGACATG
1 GTCTTACACGAAATCAAATATCGATGCCAACTGTCCCAGACAGG
* *
79705878 GTCTTACACGTAAATCTCAA-ATCGATGCCAAC-GTCCCATAC-GTG
1 GTCTTACACG-AAATC-AAATATCGATGCCAACTGTCCCAGACAG-G
*
79705922 GTCTTACTCGAAATCAAATATCGA
1 GTCTTACACGAAATCAAATATCGA
79705946 AAATCCTATG
Statistics
Matches: 93, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
42 29 0.31
43 37 0.40
44 27 0.29
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (44 bp):
GTCTTACACGAAATCAAATATCGATGCCAACTGTCCCAGACAGG
Found at i:79705882 original size:42 final size:41
Alignment explanation
Indices: 79705793--79705942 Score: 149
Period size: 42 Copynumber: 3.5 Consensus size: 41
79705783 CCCAGATGTA
* * * *
79705793 GTCTTACATGTAATCAAATATCGATGACACTGTCCCAGACAGG
1 GTCTTACACGAAATCAAATAT-GATGCCA-TGTCCCAGACATG
79705836 GTCTTACACGAAATCAAATATGATGCCGATGTCCCAGACATG
1 GTCTTACACGAAATCAAATATGATGCC-ATGTCCCAGACATG
* * * *
79705878 GTCTTACACGTAAATCTCAAAT-CGATGCCAACGTCCCATACGTG
1 GTCTTACACG-AAA--TCAAATATGATGCC-ATGTCCCAGACATG
*
79705922 GTCTTACTCGAAATCAAATAT
1 GTCTTACACGAAATCAAATAT
79705943 CGAAAATCCT
Statistics
Matches: 91, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
41 6 0.07
42 27 0.30
43 26 0.29
44 26 0.29
45 6 0.07
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (41 bp):
GTCTTACACGAAATCAAATATGATGCCATGTCCCAGACATG
Found at i:79708921 original size:38 final size:37
Alignment explanation
Indices: 79708841--79708931 Score: 114
Period size: 37 Copynumber: 2.4 Consensus size: 37
79708831 TCCCCATTTA
* *
79708841 TGGTGTGTAGGGTGGATGGGCTTATTATGGTCCTATG
1 TGGTGTGTAGGGTGGTTGGGCTTATCATGGTCCTATG
*
79708878 TGGTGTGCAGGGTGGTTGGGTCTT-TCATGG-CTCTATTG
1 TGGTGTGTAGGGTGGTTGGG-CTTATCATGGTC-CTA-TG
79708916 TGGTGTGTAGGGTGGT
1 TGGTGTGTAGGGTGGT
79708932 CGAAGTGGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
36 1 0.02
37 26 0.55
38 20 0.43
ACGTcount: A:0.10, C:0.09, G:0.43, T:0.38
Consensus pattern (37 bp):
TGGTGTGTAGGGTGGTTGGGCTTATCATGGTCCTATG
Found at i:79716100 original size:27 final size:27
Alignment explanation
Indices: 79716070--79716127 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
79716060 AAAACATCAT
79716070 GAAA-CAAAAATATGAAGGGA-GCTTTAA
1 GAAACCAAAAA-ATGAA-GGATGCTTTAA
* *
79716097 GAAACCCAAAAATGGAGGATGCTTTAA
1 GAAACCAAAAAATGAAGGATGCTTTAA
79716124 GAAA
1 GAAA
79716128 ATCATAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 3 0.11
27 19 0.70
28 5 0.19
ACGTcount: A:0.50, C:0.10, G:0.22, T:0.17
Consensus pattern (27 bp):
GAAACCAAAAAATGAAGGATGCTTTAA
Found at i:79716344 original size:39 final size:40
Alignment explanation
Indices: 79716289--79716370 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 40
79716279 TAATAAACCC
* *
79716289 AAACATAGAGAAACTTCTACGAAATCCAAATATGTAGATT
1 AAACACAGAGAAACTTCTAAGAAATCCAAATATGTAGATT
*
79716329 AAACACAGA-AAACTTCTAAGAAATCCAAATATGTAGTTT
1 AAACACAGAGAAACTTCTAAGAAATCCAAATATGTAGATT
79716368 AAA
1 AAA
79716371 AATAGAAGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 31 0.79
40 8 0.21
ACGTcount: A:0.50, C:0.15, G:0.11, T:0.24
Consensus pattern (40 bp):
AAACACAGAGAAACTTCTAAGAAATCCAAATATGTAGATT
Found at i:79721716 original size:39 final size:40
Alignment explanation
Indices: 79721621--79721843 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
79721611 TTGAATGATG
*
79721621 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
79721659 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
79721700 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
79721739 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
79721778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
79721817 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
79721844 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:79721807 original size:79 final size:81
Alignment explanation
Indices: 79721621--79721843 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
79721611 TTGAATGATG
* * *
79721621 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
79721683 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
79721700 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
79721761 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
79721778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
79721842 TG
66 TG
79721844 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:79721865 original size:79 final size:79
Alignment explanation
Indices: 79721621--79721876 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
79721611 TTGAATGATG
* * * *
79721621 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
79721682 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
79721700 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
79721764 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
79721778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
79721841 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
79721858 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
79721877 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:79729831 original size:40 final size:39
Alignment explanation
Indices: 79729660--79729869 Score: 307
Period size: 39 Copynumber: 5.3 Consensus size: 39
79729650 TGACTAAGAT
79729660 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
79729699 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* *
79729738 CTGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
79729777 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
79729817 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
79729857 CCGAAGGCATTTG
1 CCGAAGGCATTTG
79729870 AACGAGAAGC
Statistics
Matches: 156, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 110 0.71
40 46 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:79729883 original size:40 final size:39
Alignment explanation
Indices: 79729609--79729888 Score: 204
Period size: 39 Copynumber: 7.1 Consensus size: 39
79729599 TGAATGATGT
* * * *
79729609 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-AACTATAA
* * *
79729648 CCTGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGA-ACTATA-A
*
79729688 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-ACTATA-A
* *
79729727 CCGGGCTAAG-CCTGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-ACTATA-A
* *
79729766 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-AACTATAA
*
79729804 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA--ACTATAA
* ** *
79729845 CCGGGCTATGTCCCGAAGGCATTTGAACGAGAAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAA-CTATAA
79729885 CCGG
1 CCGG
79729889 TTAAATTCCG
Statistics
Matches: 207, Mismatches: 20, Indels: 27
0.81 0.08 0.11
Matches are distributed among these distances:
39 125 0.60
40 73 0.35
41 9 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAACTATAA
Found at i:79740694 original size:11 final size:11
Alignment explanation
Indices: 79740678--79740705 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
79740668 TCAAAACAAA
79740678 AATTTATCCAT
1 AATTTATCCAT
79740689 AATTTATCCAT
1 AATTTATCCAT
79740700 AATTTA
1 AATTTA
79740706 ATTAAATAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTATCCAT
Found at i:79742126 original size:42 final size:42
Alignment explanation
Indices: 79742064--79742143 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
79742054 TGAAAAGTTT
* * * *
79742064 GTTAGGAAAACTGATGATAGATGGTTGGCATCTTTTCTGTTA
1 GTTAGGAAAACTGATCATAGATGGCTGACAGCTTTTCTGTTA
79742106 GTTAGGAAAATCT-ATCATAGATGGCTGACAGCTTTTCT
1 GTTAGGAAAA-CTGATCATAGATGGCTGACAGCTTTTCT
79742144 TGACTGTTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (42 bp):
GTTAGGAAAACTGATCATAGATGGCTGACAGCTTTTCTGTTA
Found at i:79751991 original size:24 final size:24
Alignment explanation
Indices: 79751963--79752040 Score: 122
Period size: 24 Copynumber: 3.2 Consensus size: 24
79751953 CACCTGTGAG
*
79751963 ATCTGTTCCTACTTCTCAGATGCC
1 ATCTGTTCCTACTTTTCAGATGCC
*
79751987 ATCTGTTCTTACTTTTCAGATGCC
1 ATCTGTTCCTACTTTTCAGATGCC
79752011 ATCTGTGT-CTACTTTTCAGATGCC
1 ATCTGT-TCCTACTTTTCAGATGCC
79752035 ATCTGT
1 ATCTGT
79752041 GTCTAGTGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
24 49 0.98
25 1 0.02
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (24 bp):
ATCTGTTCCTACTTTTCAGATGCC
Found at i:79760966 original size:31 final size:31
Alignment explanation
Indices: 79760928--79760989 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
79760918 ACAAGGAGAA
79760928 AGAATATGGTGAGAGTGGAGGAAGATTTTTT
1 AGAATATGGTGAGAGTGGAGGAAGATTTTTT
79760959 AGAATATGGTGAGAGTGGAGGAAGATTTTTT
1 AGAATATGGTGAGAGTGGAGGAAGATTTTTT
79760990 GGAAAATGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (31 bp):
AGAATATGGTGAGAGTGGAGGAAGATTTTTT
Found at i:79761734 original size:6 final size:6
Alignment explanation
Indices: 79761723--79761757 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
79761713 ACTTGCAAAG
79761723 AAAATA AAAATA AAAATA AAAATA AAAATTA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA-TA AAAA
79761758 AATTTAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:79762150 original size:13 final size:13
Alignment explanation
Indices: 79762121--79762161 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
79762111 TTGATGAGAT
*
79762121 AAAAATAAATATTG
1 AAAAATAAATA-AG
79762135 AAAAATAAATAAG
1 AAAAATAAATAAG
*
79762148 AAAAATAAAAAAG
1 AAAAATAAATAAG
79762161 A
1 A
79762162 TGACTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (13 bp):
AAAAATAAATAAG
Found at i:79765402 original size:39 final size:40
Alignment explanation
Indices: 79765296--79765459 Score: 217
Period size: 40 Copynumber: 4.1 Consensus size: 40
79765286 GGATGATAAT
* *
79765296 TCCGGGCTAAGTCCCGAACGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* *
79765335 TTCCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
* *
79765376 TCCGGGCTAAGT-CCGAAGACATTTGTGCGAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATA
* *
79765415 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
79765455 TCCGG
1 TCCGG
79765460 TTAAAGCCCG
Statistics
Matches: 110, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
39 36 0.33
40 73 0.66
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
Found at i:79765432 original size:79 final size:80
Alignment explanation
Indices: 79765296--79765459 Score: 219
Period size: 79 Copynumber: 2.1 Consensus size: 80
79765286 GGATGATAAT
* * *
79765296 TCCGGGCTAAGTCCCGAACGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAACGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
* *
79765361 GTGCGAGTTACTATA
66 GAGCGAGTGACTATA
79765376 TCCGGGCTAAGT-CCGAA-GACATTTGTGCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAACG-CATTTGTGC-AACTGACTAAT-TCCGGGCTAAGTCCCGAAGGCA
*
79765437 TTTGAGCGAGTGGCTATA
63 TTTGAGCGAGTGACTATA
79765455 TCCGG
1 TCCGG
79765460 TTAAAGCCCG
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
78 3 0.04
79 58 0.77
80 14 0.19
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAACGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
GAGCGAGTGACTATA
Found at i:79767138 original size:40 final size:39
Alignment explanation
Indices: 79767108--79767277 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 39
79767098 GGACTAAGAT
* * *
79767108 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
*
79767148 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
*
79767188 CCGAAGGCATTCGTGCGAGTTGATAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTT-ATAAATCCGGGTTAAGTC
* * * *
79767228 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
79767267 CCGAAGGCATT
1 CCGAAGGCATT
79767278 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.28
40 82 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTATAAATCCGGGTTAAGTC
Found at i:79767204 original size:80 final size:79
Alignment explanation
Indices: 79767055--79767277 Score: 234
Period size: 80 Copynumber: 2.8 Consensus size: 79
79767045 TTGAATGCTG
* * * ** * * * * *
79767055 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
79767119 TGTGCGAGAT-ACTAAA
64 CGTGCGAGATGA-TAAA
* * *
79767135 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
79767200 GTGCGAGTTGATAAA
65 GTGCGAGATGATAAA
* * *
79767215 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
79767278 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 35 0.29
80 81 0.67
81 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATGATAAA
Found at i:79767297 original size:79 final size:80
Alignment explanation
Indices: 79767131--79767312 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 80
79767121 TGCGAGATAC
* * *
79767131 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** **
79767196 ATTCGTGCGAGTTGA
66 ATTCGAACGAGGAGA
* * *
79767211 TAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
* *
79767275 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGA
* *
79767290 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
79767313 TACGTGATTT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGA
Found at i:79775065 original size:39 final size:39
Alignment explanation
Indices: 79775004--79775176 Score: 199
Period size: 39 Copynumber: 4.4 Consensus size: 39
79774994 ATATCCGGAC
* * *
79775004 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
* *
79775044 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
79775083 TAAGTCCCGAAGGCATTCGTGCGAGTTGA-TAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGTT-ACTAAATCCGGGT
* * * *
79775123 TACGTCCGAAGGCA-T-GTGTGAGTTACTAAAACCGGGC
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
*
79775160 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
79775177 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
36 1 0.01
37 21 0.18
38 10 0.09
39 45 0.38
40 39 0.33
41 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
Found at i:79775095 original size:79 final size:77
Alignment explanation
Indices: 79775010--79775178 Score: 223
Period size: 79 Copynumber: 2.2 Consensus size: 77
79775000 GGACTAAGAT
* *
79775010 CCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATTTGTGCGAGATGA-TAAATCCGGGTTAAGTCCGAAGGCA-T-GTGCGAGTTACTA
* *
79775074 AAGCCGGGTTAAGTC
63 AAACCGGGCTAAGTC
* * * *
79775089 CCGAAGGCATTCGTGCGAGTTGATAAATCCGGGTTACGTCCGAAGGCATGTGTGAGTTACTAAAA
1 CCGAAGGCATTTGTGCGAGATGATAAATCCGGGTTAAGTCCGAAGGCATGTGCGAGTTACTAAAA
*
79775154 CCGGGCTATGTC
66 CCGGGCTAAGTC
79775166 CCGAAGGCATTTG
1 CCGAAGGCATTTG
79775179 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
77 35 0.44
78 1 0.01
79 42 0.53
80 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATGATAAATCCGGGTTAAGTCCGAAGGCATGTGCGAGTTACTAAAA
CCGGGCTAAGTC
Found at i:79775196 original size:77 final size:79
Alignment explanation
Indices: 79775033--79775211 Score: 202
Period size: 77 Copynumber: 2.3 Consensus size: 79
79775023 TGCGAGATAC
* * *
79775033 TAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
** **
79775098 TTCGTGCGAGTTGA
66 TTCGAACGAGGAGA
* * *
79775112 TAAATCCGGGTTACGTCCGAAGGCA-T-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
* *
79775175 TTTGAACGAGGAGC
66 TTCGAACGAGGAGA
* *
79775189 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGT-CCGAAGG
79775212 TACGTGATTT
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
76 6 0.07
77 53 0.63
78 1 0.01
79 24 0.29
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (79 bp):
TAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
TTCGAACGAGGAGA
Found at i:79789554 original size:46 final size:46
Alignment explanation
Indices: 79789504--79789674 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
79789494 TGGTTGAGCA
79789504 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAATG
* * *
79789550 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAA--ATG
* * * * *
79789595 CATCCAAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAATG
* *
79789643 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
79789675 TAGGGGCGGG
Statistics
Matches: 103, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 56 0.54
47 27 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAATG
Found at i:79789660 original size:93 final size:93
Alignment explanation
Indices: 79789501--79789671 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
79789491 GGATGGTTGA
* *
79789501 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAATGCCCGAACTCGTTGAGT
79789566 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
79789594 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAATGCCCGAACTCGTTGAGT
79789659 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79789672 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79789938 original size:19 final size:20
Alignment explanation
Indices: 79789901--79789938 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79789891 ATAAGGTGGT
79789901 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
79789921 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
79789939 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:79795837 original size:14 final size:15
Alignment explanation
Indices: 79795820--79795849 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79795810 ACATTATTCA
79795820 AAAATAT-ATTTTAC
1 AAAATATAATTTTAC
79795834 AAAATATAATTTTAC
1 AAAATATAATTTTAC
79795849 A
1 A
79795850 TTTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATATAATTTTAC
Found at i:79797705 original size:15 final size:15
Alignment explanation
Indices: 79797670--79797703 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
79797660 ACTCAATTAT
*
79797670 TATTAATTTTTTAAA
1 TATTTATTTTTTAAA
79797685 TATTTATTTTTT-AA
1 TATTTATTTTTTAAA
79797699 TATTT
1 TATTT
79797704 TAGCATACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTATTTTTTAAA
Found at i:79806000 original size:24 final size:23
Alignment explanation
Indices: 79805949--79806073 Score: 130
Period size: 23 Copynumber: 5.3 Consensus size: 23
79805939 TCATGGTCGA
*
79805949 TAAGCTCTTACTGAGCTGATAAACAG
1 TAAGCTC-TATTGAGCTG--AAACAG
79805975 TAAGCTCTATTGAGCTGAAAACAG
1 TAAGCTCTATTGAGCTG-AAACAG
79805999 TAAGCTCTATTGAGCT--AACAG
1 TAAGCTCTATTGAGCTGAAACAG
* *
79806020 TAAGCTCT-TTCGAGCTGAATCGG
1 TAAGCTCTATT-GAGCTGAAACAG
* * *
79806043 TAAGCTCCAATGAGCTGAAATAG
1 TAAGCTCTATTGAGCTGAAACAG
79806066 TAAGCTCT
1 TAAGCTCT
79806074 TACGGGCTAT
Statistics
Matches: 85, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
20 2 0.02
21 18 0.21
23 26 0.31
24 23 0.27
25 9 0.11
26 7 0.08
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTGAAACAG
Found at i:79806035 original size:45 final size:44
Alignment explanation
Indices: 79805968--79806074 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
79805958 ACTGAGCTGA
* *
79805968 TAAACAGTAAGCTCTATTGAGCTGAAAACAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCT-TTGAGCTG-AAACAGTAAGCTCCAATGAGC
* *
79806014 T-AACAGTAAGCTCTTTCGAGCTGAATCGGTAAGCTCCAATGAGC
1 TAAACAGTAAGCTCTTT-GAGCTGAAACAGTAAGCTCCAATGAGC
*
79806058 TGAAATAGTAAGCTCTT
1 T-AAACAGTAAGCTCTT
79806075 ACGGGCTATG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
44 20 0.38
45 19 0.36
46 14 0.26
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
TAAACAGTAAGCTCTTTGAGCTGAAACAGTAAGCTCCAATGAGC
Found at i:79806068 original size:23 final size:22
Alignment explanation
Indices: 79805970--79806072 Score: 93
Period size: 24 Copynumber: 4.5 Consensus size: 22
79805960 TGAGCTGATA
*
79805970 AACAGTAAGCTCTATTGAGCTG
1 AACAGTAAGCTCCATTGAGCTG
*
79805992 AAAACAGTAAGCTCTATTGAGCT-
1 --AACAGTAAGCTCCATTGAGCTG
*
79806015 AACAGTAAGCT-CTTTCGAGCTG
1 AACAGTAAGCTCCATT-GAGCTG
* *
79806037 AATCGGTAAGCTCCAATGAGCTG
1 AA-CAGTAAGCTCCATTGAGCTG
*
79806060 AAATAGTAAGCTC
1 -AACAGTAAGCTC
79806073 TTACGGGCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
20 2 0.03
21 16 0.24
22 2 0.03
23 22 0.33
24 25 0.37
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (22 bp):
AACAGTAAGCTCCATTGAGCTG
Found at i:79816614 original size:42 final size:42
Alignment explanation
Indices: 79816525--79816640 Score: 135
Period size: 42 Copynumber: 2.8 Consensus size: 42
79816515 AAGTTATTAA
* * * *
79816525 GATTTCGTATAAGACTATATCTGGGATATGGCCTCGGTATGT
1 GATTTCGTATAAGACCATATCAGGGATATGGTCTCGATATGT
* * *
79816567 GATTTCGTATAAGACCATGTCAGGGACATGGTGTCGATATGAT
1 GATTTCGTATAAGACCATATCAGGGATATGGTCTCGATATG-T
* *
79816610 -ATTTCATGTAAGACCATATCAGGGATATGGT
1 GATTTCGTATAAGACCATATCAGGGATATGGT
79816641 ATTGAAACGA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
42 61 0.98
43 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.33
Consensus pattern (42 bp):
GATTTCGTATAAGACCATATCAGGGATATGGTCTCGATATGT
Found at i:79820037 original size:51 final size:51
Alignment explanation
Indices: 79819953--79820120 Score: 273
Period size: 51 Copynumber: 3.3 Consensus size: 51
79819943 CTGATCACAT
*
79819953 TTATCACTTGTCACTTGTCACTGATCAGGTAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
79820004 TTTTCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
79820055 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGTTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
79820106 TTATCACTTGTCACT
1 TTATCACTTGTCACT
79820121 GATCAGAAGT
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 107 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:79824962 original size:13 final size:12
Alignment explanation
Indices: 79824940--79824964 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79824930 AAGAACTTAA
79824940 ACAATTTTTTTT
1 ACAATTTTTTTT
79824952 ACAATTTTTTTT
1 ACAATTTTTTTT
79824964 A
1 A
79824965 TTTTTTTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (12 bp):
ACAATTTTTTTT
Found at i:79826072 original size:9 final size:9
Alignment explanation
Indices: 79826058--79826111 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
79826048 GACACCTGCA
79826058 ATTAAACAC
1 ATTAAACAC
79826067 ATTAAA-AC
1 ATTAAACAC
*
79826075 ---AAACAT
1 ATTAAACAC
79826081 ATTAAACAC
1 ATTAAACAC
79826090 ATTAAACAC
1 ATTAAACAC
79826099 ATTAAACAC
1 ATTAAACAC
79826108 -TTAA
1 ATTAA
79826112 CTTAAATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
5 3 0.08
6 1 0.03
8 6 0.15
9 29 0.74
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.24
Consensus pattern (9 bp):
ATTAAACAC
Found at i:79827007 original size:5 final size:5
Alignment explanation
Indices: 79826997--79827042 Score: 55
Period size: 5 Copynumber: 10.0 Consensus size: 5
79826987 CTGAGGCTAA
*
79826997 AATTT AATTT -ATTT AATTT -ATTT -ATTT AATTT AA-TT CATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT AATTT
79827043 TATTCTGCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
4 15 0.42
5 21 0.58
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (5 bp):
AATTT
Found at i:79827012 original size:9 final size:9
Alignment explanation
Indices: 79826998--79827042 Score: 65
Period size: 9 Copynumber: 5.0 Consensus size: 9
79826988 TGAGGCTAAA
79826998 ATTTAATTT
1 ATTTAATTT
79827007 ATTTAATTT
1 ATTTAATTT
79827016 ATTT-ATTT
1 ATTTAATTT
*
79827024 AATTTAATTC
1 -ATTTAATTT
79827034 ATTTAATTT
1 ATTTAATTT
79827043 TATTCTGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 4 0.12
9 25 0.78
10 3 0.09
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (9 bp):
ATTTAATTT
Found at i:79827047 original size:14 final size:14
Alignment explanation
Indices: 79826997--79827047 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
79826987 CTGAGGCTAA
*
79826997 AATTTAATTTATTT
1 AATTTAATTCATTT
*
79827011 AATTT-ATTTATTT
1 AATTTAATTCATTT
79827024 AATTTAATTCATTT
1 AATTTAATTCATTT
*
79827038 AATTTTATTC
1 AATTTAATTC
79827048 TGCAATCATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
13 13 0.38
14 21 0.62
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (14 bp):
AATTTAATTCATTT
Found at i:79833497 original size:19 final size:19
Alignment explanation
Indices: 79833473--79833510 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
79833463 GTAGATGAGT
79833473 TAGAAGTTACCTTAATATC
1 TAGAAGTTACCTTAATATC
79833492 TAGAAGTTACCTTAATATC
1 TAGAAGTTACCTTAATATC
79833511 ATCTATGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TAGAAGTTACCTTAATATC
Found at i:79837973 original size:59 final size:59
Alignment explanation
Indices: 79837910--79838031 Score: 208
Period size: 59 Copynumber: 2.1 Consensus size: 59
79837900 TCATCATTGG
*
79837910 AAATTGAATGAAATATTAAGGTTAATTTTAGAAATTAGTGATTAAAGTTATAATAAATA
1 AAATTGAATGAAATATTAAGGTTAATTTTAGAAATTAGTGATTAAAGTTATAATAAACA
* * *
79837969 AAATTGAATGAATTATTAAGGTTAATTTTGGAAATTAGTGATTAAATTTATAATAAACA
1 AAATTGAATGAAATATTAAGGTTAATTTTAGAAATTAGTGATTAAAGTTATAATAAACA
79838028 AAAT
1 AAAT
79838032 AAAATAATCT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.48, C:0.01, G:0.13, T:0.38
Consensus pattern (59 bp):
AAATTGAATGAAATATTAAGGTTAATTTTAGAAATTAGTGATTAAAGTTATAATAAACA
Found at i:79838045 original size:59 final size:59
Alignment explanation
Indices: 79837916--79838045 Score: 190
Period size: 59 Copynumber: 2.2 Consensus size: 59
79837906 TTGGAAATTG
* * **
79837916 AATGAAATATTAAGGTTAATTTTAGAAATTAGTGATTAAAGTTATAATAAATAAAATTG
1 AATGAATTATTAAGGTTAATTTTAGAAATTAGTGATTAAAGTTATAATAAACAAAATAA
* *
79837975 AATGAATTATTAAGGTTAATTTTGGAAATTAGTGATTAAATTTATAATAAACAAAATAA
1 AATGAATTATTAAGGTTAATTTTAGAAATTAGTGATTAAAGTTATAATAAACAAAATAA
79838034 AAT-AATCTATTA
1 AATGAAT-TATTA
79838046 TCATCATCAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
58 3 0.05
59 61 0.95
ACGTcount: A:0.49, C:0.02, G:0.12, T:0.38
Consensus pattern (59 bp):
AATGAATTATTAAGGTTAATTTTAGAAATTAGTGATTAAAGTTATAATAAACAAAATAA
Found at i:79838080 original size:14 final size:15
Alignment explanation
Indices: 79838061--79838093 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
79838051 ATCATCCACC
*
79838061 AAAAATAATAAGAA-
1 AAAAATAAGAAGAAG
79838075 AAAAATAAGAAGAAG
1 AAAAATAAGAAGAAG
79838090 AAAA
1 AAAA
79838094 CCTAGCCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (15 bp):
AAAAATAAGAAGAAG
Found at i:79841966 original size:25 final size:25
Alignment explanation
Indices: 79841932--79841980 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
79841922 GCATTTATAT
*
79841932 ATATATATATTAGTTTGTATTTCGC
1 ATATATATATTAATTTGTATTTCGC
79841957 ATATATATATTAATTTGTATTTCG
1 ATATATATATTAATTTGTATTTCG
79841981 TGTGATGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.53
Consensus pattern (25 bp):
ATATATATATTAATTTGTATTTCGC
Found at i:79842501 original size:73 final size:73
Alignment explanation
Indices: 79842413--79842557 Score: 281
Period size: 73 Copynumber: 2.0 Consensus size: 73
79842403 TTGAATGATA
*
79842413 AACTAAAACATTTTAATTAATAATTAAGGTCAATATCTAAAAGTTAAAAATATAAAAACAAATTT
1 AACTAAAACACTTTAATTAATAATTAAGGTCAATATCTAAAAGTTAAAAATATAAAAACAAATTT
79842478 TATTAATT
66 TATTAATT
79842486 AACTAAAACACTTTAATTAATAATTAAGGTCAATATCTAAAAGTTAAAAATATAAAAACAAATTT
1 AACTAAAACACTTTAATTAATAATTAAGGTCAATATCTAAAAGTTAAAAATATAAAAACAAATTT
79842551 TATTAAT
66 TATTAAT
79842558 CAAATAATAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.34
Consensus pattern (73 bp):
AACTAAAACACTTTAATTAATAATTAAGGTCAATATCTAAAAGTTAAAAATATAAAAACAAATTT
TATTAATT
Found at i:79854879 original size:14 final size:14
Alignment explanation
Indices: 79854860--79854933 Score: 67
Period size: 14 Copynumber: 5.1 Consensus size: 14
79854850 TATTCATAAT
79854860 GGTTCGCATACAAG
1 GGTTCGCATACAAG
* *
79854874 GGTTCGCCTATAGAG
1 GGTTCGCATACA-AG
*
79854889 GGTTCGCATACATG
1 GGTTCGCATACAAG
* * *
79854903 GGTTCTCCTATAAG
1 GGTTCGCATACAAG
*
79854917 AGTTCGCATACAGAG
1 GGTTCGCATACA-AG
79854932 GG
1 GG
79854934 GTTATACACA
Statistics
Matches: 44, Mismatches: 14, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
14 29 0.66
15 15 0.34
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (14 bp):
GGTTCGCATACAAG
Found at i:79854892 original size:29 final size:28
Alignment explanation
Indices: 79854855--79854933 Score: 104
Period size: 29 Copynumber: 2.8 Consensus size: 28
79854845 GTTCTTATTC
*
79854855 ATAATGGTTCGCATACAAGGGTTCGCCT
1 ATAAGGGTTCGCATACAAGGGTTCGCCT
* *
79854883 ATAGAGGGTTCGCATACATGGGTTCTCCT
1 ATA-AGGGTTCGCATACAAGGGTTCGCCT
*
79854912 ATAAGAGTTCGCATACAGAGGG
1 ATAAGGGTTCGCATACA-AGGG
79854934 GTTATACACA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 16 0.36
29 28 0.64
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (28 bp):
ATAAGGGTTCGCATACAAGGGTTCGCCT
Found at i:79860849 original size:32 final size:32
Alignment explanation
Indices: 79860808--79860872 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
79860798 TTAAGTAAAT
79860808 TTCTCATTATTTTTTCGTAATTTCTTTATGAA
1 TTCTCATTATTTTTTCGTAATTTCTTTATGAA
79860840 TTCTCATTATTTTTTCGTAATTTCTTTATGAA
1 TTCTCATTATTTTTTCGTAATTTCTTTATGAA
79860872 T
1 T
79860873 AATTATTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.06, T:0.60
Consensus pattern (32 bp):
TTCTCATTATTTTTTCGTAATTTCTTTATGAA
Found at i:79861814 original size:41 final size:40
Alignment explanation
Indices: 79861746--79861913 Score: 237
Period size: 41 Copynumber: 4.1 Consensus size: 40
79861736 GCAAAAATTA
* *
79861746 TAAAACACGGAGCAATAGCGGCGTTTTTGGTAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
* *
79861787 TAAAAATAGAGCAATAGCGGCGTTTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-CTTTTGGTAAAACGCCGC
* *
79861828 TAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
* *
79861868 TAAAAACCAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
79861909 TAAAA
1 TAAAA
79861914 GTCATATAAT
Statistics
Matches: 117, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 37 0.32
41 80 0.68
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.20
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:79861896 original size:81 final size:82
Alignment explanation
Indices: 79861746--79861913 Score: 250
Period size: 81 Copynumber: 2.1 Consensus size: 82
79861736 GCAAAAATTA
* * * *
79861746 TAAAACACGGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAATAGAGCAATAGCGGCGTT
1 TAAAACACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTC
*
79861811 TTTTGGTAAAACGCCGC
66 TTTTGGCAAAACGCCGC
* *
79861828 TAAAAC-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCG-
1 TAAAACACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGT
79861891 CTTTTGGCAAAACGCCGC
65 CTTTTGGCAAAACGCCGC
79861909 TAAAA
1 TAAAA
79861914 GTCATATAAT
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
81 58 0.74
82 20 0.26
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.20
Consensus pattern (82 bp):
TAAAACACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTC
TTTTGGCAAAACGCCGC
Found at i:79861975 original size:47 final size:47
Alignment explanation
Indices: 79861918--79862049 Score: 124
Period size: 54 Copynumber: 2.6 Consensus size: 47
79861908 CTAAAAGTCA
* *
79861918 TATAATCCCTAAAACCCTAAAGCCCAAAAAAATA-A-TAAACACTAATC
1 TATAACCCCTAAAACCCTAAA-CCCAAAAAAA-ACACTAAACACTAAAC
* *
79861965 TATAACCCCTAAAACACTAAACCCCTAAATCCTAAAAACACCTAAATACTAAAC
1 TATAACCCCTAAAACCCTAAA-CCC-AAA----AAAAACA-CTAAACACTAAAC
79862019 TATAACCCCTAAAACCCTAAACTCCAAAAAA
1 TATAACCCCTAAAACCCTAAAC-CCAAAAAA
79862050 CATCATATGG
Statistics
Matches: 70, Mismatches: 6, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
47 22 0.31
48 3 0.04
49 3 0.04
51 1 0.01
52 5 0.07
53 4 0.06
54 32 0.46
ACGTcount: A:0.52, C:0.30, G:0.01, T:0.18
Consensus pattern (47 bp):
TATAACCCCTAAAACCCTAAACCCAAAAAAAACACTAAACACTAAAC
Done.