Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 243 of 356
Found at i:79861988 original size:54 final size:53
Alignment explanation
Indices: 79861929--79862040 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 53
79861919 ATAATCCCTA
*
79861929 AAACCCTAAAGCCCAAAAAAATAATAAACACTAATCTATAACCCCTAAAACACT
1 AAACCCTAAAGCCCAAAAAAA-AATAAACACTAAACTATAACCCCTAAAACACT
* * * ** * *
79861983 AAACCCCTAAATCCTAAAAACACCTAAATACTAAACTATAACCCCTAAAACCCT
1 AAA-CCCTAAAGCCCAAAAAAAAATAAACACTAAACTATAACCCCTAAAACACT
79862037 AAAC
1 AAAC
79862041 TCCAAAAAAC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.02
54 33 0.67
55 15 0.31
ACGTcount: A:0.52, C:0.30, G:0.01, T:0.17
Consensus pattern (53 bp):
AAACCCTAAAGCCCAAAAAAAAATAAACACTAAACTATAACCCCTAAAACACT
Found at i:79862008 original size:17 final size:17
Alignment explanation
Indices: 79861983--79862017 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
79861973 CTAAAACACT
* *
79861983 AAACCCCTAAATCCTAA
1 AAACACCTAAATACTAA
79862000 AAACACCTAAATACTAA
1 AAACACCTAAATACTAA
79862017 A
1 A
79862018 CTATAACCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.29, G:0.00, T:0.17
Consensus pattern (17 bp):
AAACACCTAAATACTAA
Found at i:79863185 original size:14 final size:14
Alignment explanation
Indices: 79863166--79863209 Score: 79
Period size: 14 Copynumber: 3.1 Consensus size: 14
79863156 ATTTCTTGCT
79863166 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
*
79863180 TCTCTAAATCTCCT
1 TCTCTAAATCTCCA
79863194 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
79863208 TC
1 TC
79863210 CTTTTGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:79867485 original size:43 final size:43
Alignment explanation
Indices: 79867421--79867517 Score: 140
Period size: 43 Copynumber: 2.3 Consensus size: 43
79867411 AAGGTTATAT
** *
79867421 TCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGATCATGA
1 TCTTTAGCGGCGTTTACGGGAAAAGCGCCGCTAAAGATCATGA
* * *
79867464 TTTTTAGCGGCGTTTACGGGAAAAGCGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTACGGGAAAAGCGCCGCTAAAGATCATGA
79867507 TCTTTAGCGGC
1 TCTTTAGCGGC
79867518 ATTTTTTTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTACGGGAAAAGCGCCGCTAAAGATCATGA
Found at i:79870553 original size:86 final size:86
Alignment explanation
Indices: 79870431--79870623 Score: 248
Period size: 86 Copynumber: 2.2 Consensus size: 86
79870421 AATAAAAATA
* * *
79870431 AAAATTGAATAAAATCTGT-TTTGAGATTTATTCCCGCCGTTCACCAGATTTTATTCCA-TTTTT
1 AAAATTAAATAAAAT-T-TATTTCAGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTTTTT
* **
79870494 TATTTTGTTTCCAAATGAGAATT
64 TATGTTGTTTCCAAAAAAGAATT
*
79870517 AAAATTAAATAAAATTTATTTCAGAATTTATTCCCGCCGTTCAACAGATTTTATTCTATTTTTTT
1 AAAATTAAATAAAATTTATTTCAG-ATTTATTCCCGCCGTTCAACAGATTTTATTCCATTTTTTT
* *
79870582 ATGTTGTTTTCAAAAAATAATT
65 ATGTTGTTTCCAAAAAAGAATT
*
79870604 -AAATTAAATAAAATCTATTT
1 AAAATTAAATAAAATTTATTT
79870624 ACGTTCAACA
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
84 1 0.01
85 6 0.06
86 64 0.68
87 23 0.24
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (86 bp):
AAAATTAAATAAAATTTATTTCAGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTTTTTTA
TGTTGTTTCCAAAAAAGAATT
Found at i:79870684 original size:70 final size:69
Alignment explanation
Indices: 79870554--79870691 Score: 174
Period size: 70 Copynumber: 2.0 Consensus size: 69
79870544 TTATTCCCGC
*
79870554 CGTTCAACAGATTTTATTCTATTTTTTTATGTTGTTTTCAAAAAATAATTAAATTAAATAAAATC
1 CGTTCAACAGATTTTATTCTATTTTTTTATGTTGTTTTCAAAAAAGAATTAAATTAAAT--AATC
79870619 TATTTA
64 TATTTA
* ** *
79870625 CGTTCAACAGATTTTATTGC-A-TTTTTTATTTTG-TTTCTAAATGAGAATTAAATTGAATAATC
1 CGTTCAACAGATTTTATT-CTATTTTTTTATGTTGTTTTC-AAAAAAGAATTAAATTAAATAATC
79870687 TATTT
64 TATTT
79870692 CGGGATTTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
68 9 0.15
69 4 0.07
70 27 0.45
71 19 0.32
72 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.08, T:0.49
Consensus pattern (69 bp):
CGTTCAACAGATTTTATTCTATTTTTTTATGTTGTTTTCAAAAAAGAATTAAATTAAATAATCTA
TTTA
Found at i:79870788 original size:66 final size:66
Alignment explanation
Indices: 79870666--79870800 Score: 198
Period size: 66 Copynumber: 2.0 Consensus size: 66
79870656 TGTTTCTAAA
* * *
79870666 TGAGAATTAAATTGAATAATCTATTTCGGGATTTATTCCCACCATATAATAGATTTTATTTCATT
1 TGAGAATTAAATTGAATAATCTATTTCGGGATTTATTCCCACCATATAACAAATTTTATTCCATT
79870731 T
66 T
* ** * *
79870732 TGAGAATTAAATTGAATAATCTATTTCGGGATTTATTTCTGCCGTTTAACAAATTTTATTCCATT
1 TGAGAATTAAATTGAATAATCTATTTCGGGATTTATTCCCACCATATAACAAATTTTATTCCATT
79870797 T
66 T
79870798 TGA
1 TGA
79870801 TTTTGTTTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (66 bp):
TGAGAATTAAATTGAATAATCTATTTCGGGATTTATTCCCACCATATAACAAATTTTATTCCATT
T
Found at i:79870860 original size:82 final size:77
Alignment explanation
Indices: 79870753--79870925 Score: 193
Period size: 77 Copynumber: 2.2 Consensus size: 77
79870743 TTGAATAATC
* * * * *
79870753 TATTTCGGGATTTATTTCTGCCGTTTAACAAATTTTATTCCATTTTGATTTTGTTTCTAAACGAG
1 TATTTCGAGATTTATTCCTGCCGTTTAACAAA--TT-TT--ATTTTGATTTTGTGTCCAAACAAG
79870818 AATTAATCAAATAATTT
61 AATTAATCAAATAATTT
* * ** *
79870835 TGTTTCGAGATTTATTCCTGTCGTTTAACTGATTTTATTTTGATTTTGTGTCCAAACAAGATTTA
1 TATTTCGAGATTTATTCCTGCCGTTTAACAAATTTTATTTTGATTTTGTGTCCAAACAAGAATTA
*
79870900 ATTAAATAATTT
66 ATCAAATAATTT
*
79870912 TATTTCAAGATTTA
1 TATTTCGAGATTTA
79870926 ATCGTACTGT
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
77 48 0.62
79 2 0.03
80 2 0.03
82 26 0.33
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.49
Consensus pattern (77 bp):
TATTTCGAGATTTATTCCTGCCGTTTAACAAATTTTATTTTGATTTTGTGTCCAAACAAGAATTA
ATCAAATAATTT
Found at i:79870952 original size:77 final size:77
Alignment explanation
Indices: 79870794--79870956 Score: 186
Period size: 77 Copynumber: 2.1 Consensus size: 77
79870784 ATTTTATTCC
* * * * * *
79870794 ATTTTGATTTTGTTTCTAAACGAGAATTAATCAAATAATTTTGTTTCGAGATTTATTCCTGTCGT
1 ATTTTGATTTTGTGTCCAAACAAGAATTAATCAAATAATTTTATTTCAAGATTTAATCCTGTCGT
* * * *
79870859 TTAACTGATTTT
66 TCAACAGAATTG
* *
79870871 ATTTTGATTTTGTGTCCAAACAAGATTTAATTAAATAATTTTATTTCAAGATTTAAT-C-GTACT
1 ATTTTGATTTTGTGTCCAAACAAGAATTAATCAAATAATTTTATTTCAAGATTTAATCCTGT-C-
79870934 GTTCAACAGAATTG
64 GTTCAACAGAATTG
79870948 ATTTTGATT
1 ATTTTGATT
79870957 ATGTTTCAGA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
75 2 0.03
76 2 0.03
77 68 0.94
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (77 bp):
ATTTTGATTTTGTGTCCAAACAAGAATTAATCAAATAATTTTATTTCAAGATTTAATCCTGTCGT
TCAACAGAATTG
Found at i:79871049 original size:13 final size:13
Alignment explanation
Indices: 79871031--79871061 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
79871021 TTTTCTATTT
79871031 ATTGTGGCCTTAA
1 ATTGTGGCCTTAA
*
79871044 ATTGTGGCTTTAA
1 ATTGTGGCCTTAA
79871057 ATTGT
1 ATTGT
79871062 AGCTTCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.45
Consensus pattern (13 bp):
ATTGTGGCCTTAA
Found at i:79873345 original size:83 final size:85
Alignment explanation
Indices: 79873085--79873451 Score: 381
Period size: 85 Copynumber: 4.4 Consensus size: 85
79873075 ATAAAAATAA
* * * * * * * *
79873085 AAATTGAATAAAATCTATTTCAAGATTTATTCTCGCCGCTCAACATATTTTATTCTATTTTTTAT
1 AAATTAAATAAAATCTGTTTCAGGATTTATTCTCGTCGTTCAACAGATTTTATTCCATTTTTGAT
*
79873150 TTT-TTTCTAAACGAGAATT
66 TTTGTTTCCAAACGAGAATT
* * ** * * * * *
79873169 AAAATTAGATAAAATTTGTTTTGGGATTTATTC-CTATCATTCAACAGACTTTATTCTATTTTTT
1 -AAATTAAATAAAATCTGTTTCAGGATTTATTCTC-GTCGTTCAACAGATTTTATTCCATTTTTG
**
79873233 ATTTTGTTTCCAAATAAGAATT
64 ATTTTGTTTCCAAACGAGAATT
* *
79873255 AAATTAAATAAAATCTGTTTCAGGATTTATTCTCGTCGTTTAACA-AATTTATTCCA-TTTTGAT
1 AAATTAAATAAAATCTGTTTCAGGATTTATTCTCGTCGTTCAACAGATTTTATTCCATTTTTGAT
*
79873318 TTTGTTTCTAAACGAGAATT
66 TTTGTTTCCAAACGAGAATT
* * *
79873338 AAATTAAATAAAATATGTTTCGGGATTTATTCTCG-CTGTTTAACAGATTTTATTCCA-TTTTGA
1 AAATTAAATAAAATCTGTTTCAGGATTTATTCTCGTC-GTTCAACAGATTTTATTCCATTTTTGA
*
79873401 TTTTGTTTCCAAATGAGAATT
65 TTTTGTTTCCAAACGAGAATT
* * *
79873422 -AATTAAAT-AATTCTGCTTCAGAATTTATTC
1 AAATTAAATAAAATCTGTTTCAGGATTTATTC
79873452 CCACCATTTA
Statistics
Matches: 238, Mismatches: 39, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
82 18 0.08
83 72 0.30
84 45 0.19
85 89 0.37
86 14 0.06
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (85 bp):
AAATTAAATAAAATCTGTTTCAGGATTTATTCTCGTCGTTCAACAGATTTTATTCCATTTTTGAT
TTTGTTTCCAAACGAGAATT
Found at i:79873685 original size:51 final size:51
Alignment explanation
Indices: 79873621--79873718 Score: 169
Period size: 51 Copynumber: 1.9 Consensus size: 51
79873611 TTTTGGTCAA
*
79873621 GTTCAAGCCATGCCAAACTCCCCATTTTCATTTTAATTTTGGCCAAACTAG
1 GTTCAAGCCATGCCAAACTCCCCATTTCCATTTTAATTTTGGCCAAACTAG
* *
79873672 GTTCAAGTCATGCCAAACTCCCCCTTTCCATTTTAATTTTGGCCAAA
1 GTTCAAGCCATGCCAAACTCCCCATTTCCATTTTAATTTTGGCCAAA
79873719 TAACCCCTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (51 bp):
GTTCAAGCCATGCCAAACTCCCCATTTCCATTTTAATTTTGGCCAAACTAG
Found at i:79874633 original size:28 final size:27
Alignment explanation
Indices: 79874554--79874828 Score: 211
Period size: 28 Copynumber: 9.9 Consensus size: 27
79874544 CCGTGTGTCT
*
79874554 CCTATTTTTCAGATTTTACAAATTTATCC
1 CCTATTTTTTAGATTTTAC-AATTT-TCC
* * *
79874583 CCTA-CTTTAAAATTTTTACAATTTTACC
1 CCTATTTTTTAGA-TTTTACAATTTT-CC
* * *
79874611 CCTATTTTTTTGATTCTATAA-TTTCC
1 CCTATTTTTTAGATTTTACAATTTTCC
* * *
79874637 CCTATTTTTTGGATTTTACAGTTTTGCT
1 CCTATTTTTTAGATTTTACAATTTT-CC
*
79874665 CATATTTTTTAGATTTTACAATCTTGT-C
1 CCTATTTTTTAGATTTTACAAT-TT-TCC
* *
79874693 CCTATTTTTTATATTTTACAATTTAGCC
1 CCTATTTTTTAGATTTTACAATTT-TCC
79874721 CCTATTTTTTAGATTTTACAATATTTCC
1 CCTATTTTTTAGATTTTACAAT-TTTCC
* * * *
79874749 TCTATTTTTAAAATTTTACAATTTT-G
1 CCTATTTTTTAGATTTTACAATTTTCC
* *
79874775 CCTATATTTTATAGATTTTA-AAGTTGT-G
1 CCTAT-TTTT-TAGATTTTACAA-TTTTCC
*
79874803 CCTTTGTTTTTAGATTTTACAATTTT
1 CCTAT-TTTTTAGATTTTACAATTTT
79874829 ACGCAAAATT
Statistics
Matches: 198, Mismatches: 35, Indels: 28
0.76 0.13 0.11
Matches are distributed among these distances:
26 23 0.12
27 30 0.15
28 126 0.64
29 18 0.09
30 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.06, T:0.54
Consensus pattern (27 bp):
CCTATTTTTTAGATTTTACAATTTTCC
Found at i:79874755 original size:84 final size:80
Alignment explanation
Indices: 79874554--79874787 Score: 233
Period size: 82 Copynumber: 2.8 Consensus size: 80
79874544 CCGTGTGTCT
* * *
79874554 CCTATTTTTCAGATTTTACAAATTTATCC-CCTA-CTTTAAAATTTTTACAATTTTACCCCTATT
1 CCTATTTTTTAGATTTTAC-AATTT-TCCTCATATTTTTAAAA-TTTTACAATTTT--CCCTATT
*
79874617 TTTT-TGATTCTATAATTTCC
61 TTTTAT-ATTCTACAATTTCC
* * * * *
79874637 CCTATTTTTTGGATTTTACAGTTTTGCTCATATTTTTTAGATTTTACAATCTTGTCCCTATTTTT
1 CCTATTTTTTAGATTTTACAATTTTCCTCATATTTTTAAAATTTTACAAT-TT-TCCCTATTTTT
*
79874702 TATATTTTACAATTTAGCC
64 TATATTCTACAATTT--CC
* *
79874721 CCTATTTTTTAGATTTTACAATATTTCCTC-TATTTTTAAAATTTTACAATTTTGCCTATATTTT
1 CCTATTTTTTAGATTTTACAAT-TTTCCTCATATTTTTAAAATTTTACAATTTTCCCTATTTTTT
79874785 ATA
65 ATA
79874788 GATTTTAAAG
Statistics
Matches: 126, Mismatches: 17, Indels: 17
0.79 0.11 0.11
Matches are distributed among these distances:
81 2 0.02
82 50 0.40
83 27 0.21
84 41 0.33
85 6 0.05
ACGTcount: A:0.25, C:0.17, G:0.05, T:0.53
Consensus pattern (80 bp):
CCTATTTTTTAGATTTTACAATTTTCCTCATATTTTTAAAATTTTACAATTTTCCCTATTTTTTA
TATTCTACAATTTCC
Found at i:79874793 original size:84 final size:81
Alignment explanation
Indices: 79874554--79874825 Score: 232
Period size: 83 Copynumber: 3.3 Consensus size: 81
79874544 CCGTGTGTCT
* * *
79874554 CCTATTTTTCAGATTTTACAA-ATTTATCCCCTA-CTTTAAAATTTTTACAATTTTACCCCTAT-
1 CCTATTTTTTAGATTTTACAATA-TT-TCCTCTATTTTTAAAA-TTTTACAATTTTA--CCTATA
* *
79874616 TTTTTTGATTCTATAATTT-CC
61 TTTTTAGATTTTA-AATTTGCC
* * * * * *
79874637 CCTATTTTTTGGATTTTACAGT-TTTGCTCATATTTTTTAGATTTTACAATCTTGTCCCTAT-TT
1 CCTATTTTTTAGATTTTACAATATTTCCTC-TATTTTTAAAATTTTACAAT-TT-TACCTATATT
*
79874700 TTTATATTTTACAATTTAGCC
63 TTTAGATTTTA-AATTT-GCC
*
79874721 CCTATTTTTTAGATTTTACAATATTTCCTCTATTTTTAAAATTTTACAATTTTGCCTATATTTTA
1 CCTATTTTTTAGATTTTACAATATTTCCTCTATTTTTAAAATTTTACAATTTTACCTATATTTT-
* **
79874786 TAGATTTTAAAGTTGTG
65 TAGATTTTAAATTTGCC
*
79874803 CCTTTGTTTTTAGATTTTACAAT
1 CCTAT-TTTTTAGATTTTACAAT
79874826 TTTACGCAAA
Statistics
Matches: 154, Mismatches: 24, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
81 3 0.02
82 44 0.29
83 52 0.34
84 49 0.32
85 6 0.04
ACGTcount: A:0.25, C:0.15, G:0.06, T:0.53
Consensus pattern (81 bp):
CCTATTTTTTAGATTTTACAATATTTCCTCTATTTTTAAAATTTTACAATTTTACCTATATTTTT
AGATTTTAAATTTGCC
Found at i:79875188 original size:34 final size:34
Alignment explanation
Indices: 79875117--79875188 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
79875107 AGCATAATAC
*** *
79875117 TTGCTACTATATTGAACTGTTATAAGTATATTAA
1 TTGCTACTATACCAAACTGTTATAAGTATACTAA
*
79875151 TTGCTACTATACCAAACTGTTATAAGTATACTGA
1 TTGCTACTATACCAAACTGTTATAAGTATACTAA
79875185 TTGC
1 TTGC
79875189 CACCGTACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (34 bp):
TTGCTACTATACCAAACTGTTATAAGTATACTAA
Found at i:79875363 original size:45 final size:45
Alignment explanation
Indices: 79875308--79875445 Score: 145
Period size: 45 Copynumber: 3.0 Consensus size: 45
79875298 AACTTGTCTG
*
79875308 CACTGTTTAGTGGTTTATCCATATCGTATTAGCAACTTTTATCTA
1 CACTGATTAGTGGTTTATCCATATCGTATTAGCAACTTTTATCTA
* * * *
79875353 CACTGATTAGTGGTTTATCCACACCATATTAGCAACTTTTATTTA
1 CACTGATTAGTGGTTTATCCATATCGTATTAGCAACTTTTATCTA
* * * * *
79875398 TA-TCGAATTAGTGGTTTA-CCCTCTCCGTATTAGTAGCTTTTATCTA
1 CACT-G-ATTAGTGGTTTATCCATAT-CGTATTAGCAACTTTTATCTA
79875444 CA
1 CA
79875446 AATGTGTTGT
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
44 1 0.01
45 44 0.59
46 30 0.40
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.42
Consensus pattern (45 bp):
CACTGATTAGTGGTTTATCCATATCGTATTAGCAACTTTTATCTA
Found at i:79881964 original size:22 final size:22
Alignment explanation
Indices: 79881925--79881966 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
79881915 ATTTTAAATA
*
79881925 GTGTGTTTATTGGGTCCTAATG
1 GTGTGTTTATTGGATCCTAATG
*
79881947 GTGTGTTTATTGTATCCTAA
1 GTGTGTTTATTGGATCCTAA
79881967 GAGTACCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.10, G:0.26, T:0.48
Consensus pattern (22 bp):
GTGTGTTTATTGGATCCTAATG
Found at i:79886573 original size:22 final size:22
Alignment explanation
Indices: 79886540--79886582 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
79886530 AATTAACATA
* *
79886540 ATAAAACAATAC-TAAATAAAT
1 ATAAAAAAATACAAAAATAAAT
79886561 ATAAAAAAGATACAAAAATAAA
1 ATAAAAAA-ATACAAAAATAAA
79886583 CAAACAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 4 0.22
23 7 0.39
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.19
Consensus pattern (22 bp):
ATAAAAAAATACAAAAATAAAT
Found at i:79886951 original size:20 final size:19
Alignment explanation
Indices: 79886891--79886963 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
79886881 TACATAATAA
*
79886891 ATAATTAATAATAAAATGAT
1 ATAA-TAATAATAAAAAGAT
* *
79886911 ATAGTAA-AATAAAAATAAT
1 ATAATAATAATAAAAA-GAT
79886930 ATAATGAATAATAAAAAGAT
1 ATAAT-AATAATAAAAAGAT
79886950 ATAATATATAATAA
1 ATAATA-ATAATAA
79886964 TTTTTACATA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 7 0.16
19 10 0.23
20 19 0.43
21 8 0.18
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAATAATAATAAAAAGAT
Found at i:79889672 original size:79 final size:80
Alignment explanation
Indices: 79889512--79889736 Score: 264
Period size: 79 Copynumber: 2.8 Consensus size: 80
79889502 TTGAACGATG
* * * * *
79889512 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
79889574 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGATACTAAA
*
79889592 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
79889654 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
** * *
79889671 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
79889736 G
66 G
79889737 AACAAGGAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
78 1 0.01
79 69 0.54
80 46 0.36
81 10 0.08
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:79889700 original size:40 final size:40
Alignment explanation
Indices: 79889512--79889736 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
79889502 TTGAACGATG
* * * *
79889512 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
79889552 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
79889592 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
79889632 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79889671 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
79889712 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79889737 AACAAGGAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79889728 original size:119 final size:120
Alignment explanation
Indices: 79889512--79889736 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
79889502 TTGAACGATG
*
79889512 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
79889577 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
79889632 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
79889694 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGATACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
79889737 AACAAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.76
120 20 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:79889758 original size:79 final size:79
Alignment explanation
Indices: 79889586--79889769 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 79
79889576 TGTGCGAGAT
** *
79889586 ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAG
1 ACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAG
** * *
79889650 GCATTTGTGCGAGTT
65 GCATTTGAACAAGTG
* * *
79889665 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAA
79889729 GGCATTTGAACAAG-G
64 GGCATTTGAACAAGTG
* *
79889744 AGCTATATCC-GGTTAAATTCCGAAGG
1 A-CTAAATCCGGGTTAAATCCCGAAGG
79889770 TACGTGATTT
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 61 0.69
80 24 0.27
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (79 bp):
ACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGG
CATTTGAACAAGTG
Found at i:79908623 original size:43 final size:42
Alignment explanation
Indices: 79908557--79908713 Score: 161
Period size: 43 Copynumber: 3.7 Consensus size: 42
79908547 AGCTCGTACA
* * *
79908557 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAACATTG
1 ATGCCAATGTCCCAGACATGGTCTTACAAGTAATCAAACA-CG
* * * * *
79908600 ATGCCACTGTCCCAGACAAGGTCTTACAAGAAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACAAGTAATCAAACACG
* **
79908642 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACAAGT-AATCA-AACACG
* * *
79908686 ATGCTAACGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
79908714 CGATAACACA
Statistics
Matches: 94, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 28 0.30
43 38 0.40
44 28 0.30
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACAAGTAATCAAACACG
Found at i:79914200 original size:40 final size:40
Alignment explanation
Indices: 79914106--79914330 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
79914096 TATTCGAATG
*
79914106 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
** * * *
79914147 ATAAGCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
79914187 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
79914227 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
79914267 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
79914307 ACATCCGGGCTAAGA-CTCGAAGGC
1 ATATCCGGGCTAAGATC-CGAAGGC
79914331 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 22, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
39 2 0.01
40 125 0.80
41 28 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:79914286 original size:80 final size:80
Alignment explanation
Indices: 79914106--79914366 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
79914096 TATTCGAATG
* ** * *
79914106 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAAGCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
79914171 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
79914187 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
79914252 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
79914267 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACTCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
79914332 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
79914346 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79914367 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 93 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:79914320 original size:120 final size:120
Alignment explanation
Indices: 79914106--79914366 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 120
79914096 TATTCGAATG
* * * *
79914106 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAAGCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
79914171 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
79914227 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * * *
79914290 CATTTATGCTAG-TGACCACATCCGGGCTAAGACTCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
79914346 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
79914367 ATTACTTGAG
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 55 0.46
121 31 0.26
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:79920111 original size:33 final size:33
Alignment explanation
Indices: 79920074--79920144 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
79920064 CTCAGCCCTC
**
79920074 ATCAG-AATTAATTGGGCCTAGCCCATTCTCAAA
1 ATCAGTAA-TAATTGGGCCTAGCCCATTAACAAA
* *
79920107 ATCAGTAATAGTTGGGCTTAGCCCATTAACAAA
1 ATCAGTAATAATTGGGCCTAGCCCATTAACAAA
79920140 ATCAG
1 ATCAG
79920145 GTGGACCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (33 bp):
ATCAGTAATAATTGGGCCTAGCCCATTAACAAA
Found at i:79920605 original size:27 final size:27
Alignment explanation
Indices: 79920575--79920664 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
79920565 AGGCATAATC
* *
79920575 GTCATTCTACCATATAGGAGCATTACG
1 GTCATTTTACCATACAGGAGCATTACG
* * * *
79920602 GTCATTTTACCCTACAGGGGTATTATG
1 GTCATTTTACCATACAGGAGCATTACG
*
79920629 GTCATTTTACCATACAAGG-GTATTACG
1 GTCATTTTACCATAC-AGGAGCATTACG
79920656 GTC-TTTTAC
1 GTCATTTTAC
79920665 ACTACCAAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.11
27 45 0.83
28 3 0.06
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGAGCATTACG
Found at i:79920673 original size:27 final size:26
Alignment explanation
Indices: 79920596--79920678 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 26
79920586 ATATAGGAGC
*
79920596 ATTACGGTCATTTTACCCTACAGGGGT
1 ATTACGGTCATTTTA-CCTACAAGGGT
*
79920623 ATTATGGTCATTTTACCATACAAGGGT
1 ATTACGGTCATTTTACC-TACAAGGGT
79920650 ATTACGGTC-TTTTACACTACCAA-GGT
1 ATTACGGTCATTTTAC-CTA-CAAGGGT
79920676 ATT
1 ATT
79920679 TTAGTAATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
26 16 0.32
27 34 0.68
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (26 bp):
ATTACGGTCATTTTACCTACAAGGGT
Found at i:79920732 original size:27 final size:26
Alignment explanation
Indices: 79920673--79920824 Score: 110
Period size: 27 Copynumber: 5.7 Consensus size: 26
79920663 ACACTACCAA
* *
79920673 GGTATTTT-AGTAATTTTATGAACCAGG
1 GGTATTTTGA-TAATTTT-TAAACTAGG
* * * *
79920700 GCTATTTTGGTAATTTTCTAAATTGGG
1 GGTATTTTGATAATTTT-TAAACTAGG
*
79920727 GGTATTTTGATAATTTTTCAAACCAGG
1 GGTATTTTGATAATTTTT-AAACTAGG
*
79920754 GGTATTTCGATAATTTTTTAAACTAGG
1 GGTATTTTGATAA-TTTTTAAACTAGG
** *
79920781 GGTATTTCAATAATTTTTGAAA-TCGAG
1 GGTATTTTGATAATTTTT-AAACTAG-G
* *
79920808 GGTATTTCGTTAATTTT
1 GGTATTTTGATAATTTT
79920825 GCAATGCGGG
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
26 8 0.08
27 89 0.87
28 5 0.05
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.45
Consensus pattern (26 bp):
GGTATTTTGATAATTTTTAAACTAGG
Found at i:79920741 original size:54 final size:52
Alignment explanation
Indices: 79920673--79920824 Score: 144
Period size: 54 Copynumber: 2.8 Consensus size: 52
79920663 ACACTACCAA
* * * *
79920673 GGTATTTTAGTAATTTTATGAACCAGGGCTATTTTGGTAATTTTCTAAATTGGG
1 GGTATTTTA-TAATTTT-TGAACCAGGGCTATTTCGATAATTTTCTAAACTAGG
* * *
79920727 GGTATTTTGATAATTTTTCAAACCAGGGGTATTTCGATAATTTTTTAAACTAGG
1 GGTATTTT-ATAATTTTT-GAACCAGGGCTATTTCGATAATTTTCTAAACTAGG
* * *
79920781 GGTATTTCAATAATTTTTGAAATCGAGGG-TATTTCGTTAATTTT
1 GGTATTT-TATAATTTTTG-AA-CCAGGGCTATTTCGATAATTTT
79920825 GCAATGCGGG
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
53 1 0.01
54 75 0.91
55 6 0.07
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.45
Consensus pattern (52 bp):
GGTATTTTATAATTTTTGAACCAGGGCTATTTCGATAATTTTCTAAACTAGG
Found at i:79922643 original size:27 final size:27
Alignment explanation
Indices: 79922612--79922789 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
79922602 TAAATTGTAC
79922612 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
79922639 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79922665 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79922693 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
79922721 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79922748 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79922775 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79922790 GACTAAAAAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79922726 original size:82 final size:81
Alignment explanation
Indices: 79922613--79922768 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
79922603 AAATTGTACA
*
79922613 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
79922677 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79922694 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
79922759 TGCGAGTTGA
65 TGCGAATTGA
79922769 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79922780 original size:82 final size:81
Alignment explanation
Indices: 79922609--79922789 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
79922599 GATTAAATTG
*
79922609 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
79922674 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
79922690 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
79922754 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
79922772 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
79922790 GACTAAAAAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:79926658 original size:27 final size:27
Alignment explanation
Indices: 79926627--79926831 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
79926617 TAAATTGTAC
79926627 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
79926654 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79926680 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79926708 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
79926736 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
79926763 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79926790 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79926817 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79926832 GACTAAAAAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79926822 original size:109 final size:109
Alignment explanation
Indices: 79926627--79926831 Score: 277
Period size: 109 Copynumber: 1.9 Consensus size: 109
79926617 TAAATTGTAC
* *
79926627 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
* *
79926692 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
66 TGCGAATTGACCATACAGCACTAAGTGTGCGAGTTTGACTATGT
* ** *
79926736 AGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** * *
79926800 GTGCGAGTTGATTATATAGCACTGAGTGTGCG
65 GTGCGAATTGACCATACAGCACTAAGTGTGCG
79926832 GACTAAAAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
108 1 0.01
109 81 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (109 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATTGACCATACAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:79938057 original size:27 final size:27
Alignment explanation
Indices: 79938019--79938164 Score: 161
Period size: 27 Copynumber: 5.4 Consensus size: 27
79938009 CAATTTAATG
* *
79938019 AAATGACTGTTTTTCCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
79938046 AAATGACTGTTTTGCCCTCA-GAAGGTA
1 AAATGACTGTTTTGCCCTTATG-TGGTA
*
79938073 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * *
79938100 AAATGATTGTTTTACCCTCAT-TGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
79938126 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
79938153 AGATGATTGTTT
1 AAATGACTGTTT
79938165 CGTCCTATGT
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 23 0.23
27 75 0.76
28 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGTGGTA
Found at i:79938152 original size:53 final size:54
Alignment explanation
Indices: 79938019--79938164 Score: 204
Period size: 54 Copynumber: 2.7 Consensus size: 54
79938009 CAATTTAATG
* * * * *
79938019 AAATGACTGTTTTTCCCTTATGGGGTAAAATGACTGTTTTGCCCTCAGAAGGTA
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTACCCTCAGAAGGTA
**
79938073 AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTACCCTCA-TTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTACCCTCAGAAGGTA
* *
79938126 AAATGACTATTTTGCCCTTATATGGTAAGATGATTGTTT
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTT
79938165 CGTCCTATGT
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 41 0.49
54 42 0.51
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (54 bp):
AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTACCCTCAGAAGGTA
Found at i:79943503 original size:5 final size:6
Alignment explanation
Indices: 79943491--79943519 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
79943481 ATTAAATTAC
79943491 TTATTT TTATTT TTATTT TTATTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATT
79943520 AAATTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:79943692 original size:39 final size:39
Alignment explanation
Indices: 79943617--79943693 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
79943607 TTTCTCTATG
*
79943617 CTATTACATATCTATTCGATTCAATCAAACACAATAATA
1 CTATTACATATCTATTCCATTCAATCAAACACAATAATA
* *
79943656 CTATTACACT-TCTATTCCATTACATTCAACCA-AATAAT
1 CTATTACA-TATCTATTCCATT-CAATCAAACACAATAAT
79943694 TGAATTACTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 24 0.73
40 9 0.27
ACGTcount: A:0.40, C:0.23, G:0.01, T:0.35
Consensus pattern (39 bp):
CTATTACATATCTATTCCATTCAATCAAACACAATAATA
Found at i:79943725 original size:16 final size:16
Alignment explanation
Indices: 79943704--79943750 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
79943694 TGAATTACTG
79943704 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCC
* *
79943720 ATTACAGCTCTATTTC
1 ATTACAGCCCTATTCC
79943736 ATTACAGCCCTATTC
1 ATTACAGCCCTATTC
79943751 TATTCCAGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACAGCCCTATTCC
Found at i:79943871 original size:43 final size:42
Alignment explanation
Indices: 79943786--79943914 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
79943776 TAGGGTTACT
** * *
79943786 GAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATAC
1 GAGATTACATGTAAGACCATATCTGGGTTATGGCATTGATAC
* *
79943828 GAGACTT-CATGTAAGACCATAGCTAGGTTATTGGCATTGATAC
1 GAGA-TTACATGTAAGACCATATCTGGGTTA-TGGCATTGATAC
* * *
79943871 GAGATTACATATAAGACCATCTCTGGGTTATGGCATTGGTAC
1 GAGATTACATGTAAGACCATATCTGGGTTATGGCATTGATAC
79943913 GA
1 GA
79943915 TACTATGTGC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 37 0.51
43 36 0.49
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTGGGTTATGGCATTGATAC
Found at i:79946578 original size:43 final size:42
Alignment explanation
Indices: 79946482--79946581 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 42
79946472 GACTTATGAT
* *
79946482 TTACATGTAAGACCATGTCTGGGACATCGGCATCATATTTAA
1 TTACATGTAAGACCATGCCTGGGACATCGGCACCATATTTAA
* * * ** *
79946524 TTTCATTTAAGACCCTGCCTGGGGTAGT-GGCACCGATATTTGA
1 TTACATGTAAGACCATGCCTGGGACA-TCGGCACC-ATATTTAA
79946567 TTACATGTAAGACCA
1 TTACATGTAAGACCA
79946582 CGTATAGGAC
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCATGCCTGGGACATCGGCACCATATTTAA
Found at i:79965720 original size:43 final size:42
Alignment explanation
Indices: 79965654--79965810 Score: 172
Period size: 43 Copynumber: 3.7 Consensus size: 42
79965644 AGCTCGTACA
* * *
79965654 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAACATTG
1 ATGCCAATGTCCCAGACATGGTCTTACAAGTAATCAAA-ATCG
* * * *
79965697 ATGCCACTGTCCCAGACAAGGTCTTACAAGAAATC-ATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACAAGTAATCAAAAT-CG
* *
79965739 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACAAGT-AATCA-AAATCG
* *
79965783 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
79965811 CGATAACACA
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 34 0.36
44 28 0.29
45 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACAAGTAATCAAAATCG
Found at i:79968449 original size:46 final size:46
Alignment explanation
Indices: 79968399--79968570 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
79968389 TGGTTGAGCA
79968399 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
79968445 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
79968490 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
79968538 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
79968571 TGGGGCGGGT
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79968555 original size:93 final size:93
Alignment explanation
Indices: 79968396--79968566 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
79968386 GGATGGTTGA
* * * *
79968396 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
79968461 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
79968489 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
79968554 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79968567 ACTTTGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTAATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:79985251 original size:34 final size:34
Alignment explanation
Indices: 79985180--79985254 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
79985170 GTAACAGTCT
* * * *
79985180 AGTATCAGTGTGGGCCTTAGCCCATAGCAGTAGC
1 AGTATCAATGTGGGACTTAGCCCATAGCAATAAC
79985214 AGTATCAATGTGGGACTTAGCCCATTA-CAATAAC
1 AGTATCAATGTGGGACTTAGCCCA-TAGCAATAAC
79985248 AGTATCA
1 AGTATCA
79985255 GTAATGCAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 34 0.94
35 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (34 bp):
AGTATCAATGTGGGACTTAGCCCATAGCAATAAC
Found at i:79985315 original size:22 final size:23
Alignment explanation
Indices: 79985276--79985318 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
79985266 GAAGTCCTAC
*
79985276 CCGTCCATCCTCTACACTCCACT
1 CCGTCCAGCCTCTACACTCCACT
79985299 CCGTCCAGCC-CTACACTCCA
1 CCGTCCAGCCTCTACACTCCA
79985319 TGTGTGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.19, C:0.53, G:0.07, T:0.21
Consensus pattern (23 bp):
CCGTCCAGCCTCTACACTCCACT
Found at i:79997822 original size:46 final size:46
Alignment explanation
Indices: 79997769--79997947 Score: 184
Period size: 46 Copynumber: 3.9 Consensus size: 46
79997759 GGATATTTGG
79997769 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGA
* *** *
79997815 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCAAGAGATGTAACT-AG-
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGAGA
* *
79997862 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGA
* * * * * *
79997908 AC-GCCTGAGCTCGTTGTGTTGAGTCCAAGTTCGCTTATGG
1 GCATCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79997948 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
46 67 0.61
47 34 0.31
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGA
Found at i:79997884 original size:47 final size:46
Alignment explanation
Indices: 79997768--79997894 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 46
79997758 GGGATATTTG
** *
79997768 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAACAGATGAATGA
* *
79997813 GAGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCAAGAGATGTAACT-A
1 G-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAACAGATG-AA-TGA
*
79997861 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
79997895 CTTATGGATG
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
45 1 0.01
46 31 0.44
47 35 0.49
48 3 0.04
49 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAACAGATGAATGA
Found at i:79997939 original size:93 final size:93
Alignment explanation
Indices: 79997768--79997939 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
79997758 GGGATATTTG
* *
79997768 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAGCATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACAGCCGAACTCGTTGAG
* *
79997833 TTGAGTTCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCAAGTTCAAGAGATGTAACTA
* * * *
79997861 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-GCCTGAGCTCGTTGT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACAGCC-GAACTCGTTGA
79997925 GTTGAGTCCAAGTTC
65 GTTGAGTCCAAGTTC
79997940 GCTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACAGCCGAACTCGTTGAG
TTGAGTCCAAGTTCAAGAGATGTAACTA
Found at i:80002038 original size:179 final size:179
Alignment explanation
Indices: 80001736--80002061 Score: 485
Period size: 180 Copynumber: 1.8 Consensus size: 179
80001726 TAATTTTTTT
*
80001736 AGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTTATTTATCCAATTAGTA
1 AGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTGATTTATCCAATTAGTA
* * *
80001801 CATTTTATTCATTAAAGTTACACCTATTTCACTATCCAACAGTTCTGACCTCTCTTCACTAAAAA
66 CAGTTTATTCATTAAAGATACACCTATTTCACTATCCAACAGTTCCGACCTCTCTTCACTAAAAA
80001866 TTATTTATCTCATGGTAGGGACTCCAACTTAAGAGCCAATAATTTTCCC
131 TTATTTATCTCATGGTAGGGACTCCAACTTAAGAGCCAATAATTTTCCC
** * * *
80001915 AGAAACTAGACTCACATATATTCTTACCATAAGTTTTTTTATAATTTTTGGTTTAGT-CAATTAG
1 AGAAACTAGACTCACATATATTCTTACCATAA-AATTTTCAGAATTTTTGATTTA-TCCAATTAG
* * * * * *
80001979 TACAGTTTCTTCATTAAAGATACACCTATTTCATTGTCCGATAGTTCCGA-CTTTCTTCACTAAA
64 TACAGTTTATTCATTAAAGATACACCTATTTCACTATCCAACAGTTCCGACCTCTCTTCACTAAA
80002043 AATTATTTATCTCATGGTA
129 AATTATTTATCTCATGGTA
80002062 CAGATCTCGG
Statistics
Matches: 130, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
179 64 0.49
180 65 0.50
181 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (179 bp):
AGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTGATTTATCCAATTAGTA
CAGTTTATTCATTAAAGATACACCTATTTCACTATCCAACAGTTCCGACCTCTCTTCACTAAAAA
TTATTTATCTCATGGTAGGGACTCCAACTTAAGAGCCAATAATTTTCCC
Found at i:80002701 original size:50 final size:50
Alignment explanation
Indices: 80002626--80003015 Score: 313
Period size: 50 Copynumber: 7.8 Consensus size: 50
80002616 ACCAAAGCTC
* * * * *
80002626 TCTGGTACGTATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * *
80002676 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACAGGTGACTTATCCA
1 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * ** *
80002726 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * **
80002778 -CGGGT--ATGCATAGTAGCCTGCACTTAGTACAACACATGCAACCTATCAA
1 TCTGGTACATG--TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
** * * * * * * * *
80002827 TCCAGTACACGTTGTGGCTTGAACTTAGTACTACACACGTGATCTAACCA
1 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
** * * ** * *
80002877 TCTATTACACT-TATTAGCCTGCACTTAATACTACACACGTGATCGAAACTA
1 TCTGGTACA-TGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTATCAA
* * * *
80002928 TCGGGTAC-TCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
1 TCTGGTACAT-GTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
*
80002978 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
1 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACAC
80003016 TTGAACTGAA
Statistics
Matches: 264, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
49 6 0.02
50 185 0.70
51 69 0.26
52 4 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:80002915 original size:151 final size:151
Alignment explanation
Indices: 80002636--80003015 Score: 532
Period size: 151 Copynumber: 2.5 Consensus size: 151
80002626 TCTGGTACGT
* *
80002636 ATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
* * *
80002701 TAGTACTACACAGGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT
66 TAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAATACTACACACGT
**
80002766 GATCGAAGTTAACGGGTA-TGC
131 GATCGAAACTAACGGGTACT-C
* * ** * * * *
80002787 ATAGTAGCCTGCACTTAGTACAACACATGCAACCTATCAATCCAGTACACGTTGTGGCTTGAACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
* *
80002852 TAGTACTACACACGTGA-TCTAACCATCT-ATTACACTTATTAGCCTGCACTTAATACTACACAC
66 TAGTACTACACACGTGACT-TAACCATCTGA-TACACGTAGTAGCCTGCACTTAATACTACACAC
*
80002915 GTGATCGAAACTATCGGGTACTC
129 GTGATCGAAACTAACGGGTACTC
* *
80002938 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
80003003 TAGTACTACACAC
66 TAGTACTACACAC
80003016 TTGAACTGAA
Statistics
Matches: 198, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
150 2 0.01
151 195 0.98
152 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (151 bp):
ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
TAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAATACTACACACGT
GATCGAAACTAACGGGTACTC
Found at i:80002954 original size:101 final size:102
Alignment explanation
Indices: 80002636--80003061 Score: 294
Period size: 101 Copynumber: 4.2 Consensus size: 102
80002626 TCTGGTACGT
* * * * * *
80002636 ATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTAGTACACGTAGTAGCCTGCACT
* * * * * * *
80002701 TAGTACTACACAGGTG-ACT-TATCCATCTGATACAC
66 TAATACTACACACGTGAACTGAAACTATCGGAAACAC
* * * * ** ** *
80002736 GTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTATGCATAGTAGCCTGCA
1 ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATCTAGTACACGTAGTAGCCTGCA
* * * * * *
80002800 CTTAGTAC-A-ACACATGCAACCT--ATCAATC-CAGTACAC
64 CTTAATACTACACACGTG-AA-CTGAAACTATCGGA-AACAC
* * * * * * * * * *
80002837 GTTGTGGCTTGAACTTAGTACTACACACGTGATCTAACCATCTATTACACTTATTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTAGTACACGTAGTAGCCTGCACT
* ** *
80002902 TAATACTACACACGTGATC-GAAACTATCGGGTACTC
66 TAATACTACACACGTGAACTGAAACTATCGGAAACAC
* *
80002938 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTAGTACACGTAGTAGCCTGCACT
* * * **
80003003 TAGTACTACACACTTGAACTGAAACTGTCTTAAACAC
66 TAATACTACACACGTGAACTGAAACTATCGGAAACAC
*
80003040 ATAGTAGCCTGCACATAGTACT
1 ATAGTAGCCTGCACTTAGTACT
80003062 GCACGTGTTC
Statistics
Matches: 252, Mismatches: 61, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
99 6 0.02
100 55 0.22
101 149 0.59
102 42 0.17
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (102 bp):
ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTAGTACACGTAGTAGCCTGCACT
TAATACTACACACGTGAACTGAAACTATCGGAAACAC
Found at i:80003068 original size:151 final size:150
Alignment explanation
Indices: 80002636--80003061 Score: 516
Period size: 151 Copynumber: 2.8 Consensus size: 150
80002626 TCTGGTACGT
* *
80002636 ATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
* * * *
80002701 TAGTACTACACAGGTG-ACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACG
66 TAGTACTACACACGTGAAC-TAACCATCTTATACACATAGTAGCCTGCACTTAGTACTA-ACACG
**
80002765 TGATCGAAGTTAACGGGTATGC
129 TGATCGAAACTAACGGGTATGC
* * ** * * * *
80002787 ATAGTAGCCTGCACTTAGTACAACACATGCAACCTATCAATCCAGTACACGTTGTGGCTTGAACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
* * * *
80002852 TAGTACTACACACGTGATCTAACCATC-TATTACACTTATTAGCCTGCACTTAATACTACACACG
66 TAGTACTACACACGTGAACTAACCATCTTA-TACACATAGTAGCCTGCACTTAGTACTA-ACACG
*
80002916 TGATCGAAACTATCGGGTACT-C
129 TGATCGAAACTAACGGGTA-TGC
* *
80002938 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
* ** * *
80003003 TAGTACTACACACTTGAACTGAAACTGTCTTAAACACATAGTAGCCTGCACATAGTACT
66 TAGTACTACACACGTGAACT--AACCATCTTATACACATAGTAGCCTGCACTTAGTACT
80003062 GCACGTGTTC
Statistics
Matches: 230, Mismatches: 39, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
150 1 0.00
151 198 0.86
152 2 0.01
153 27 0.12
154 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (150 bp):
ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
TAGTACTACACACGTGAACTAACCATCTTATACACATAGTAGCCTGCACTTAGTACTAACACGTG
ATCGAAACTAACGGGTATGC
Found at i:80011224 original size:24 final size:24
Alignment explanation
Indices: 80011192--80011294 Score: 161
Period size: 24 Copynumber: 4.3 Consensus size: 24
80011182 AAGGCCTAGC
80011192 CCCTTTTAATAACTGGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
80011216 CCCTTTTAATAACTGGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
* *
80011240 CCCTTTTTATAACTGGGGCATACG
1 CCCTTTTAATAACTGGGGCATAAG
* * *
80011264 CTCTTTTTATAACTAGGGCATAAG
1 CCCTTTTAATAACTGGGGCATAAG
80011288 CCCTTTT
1 CCCTTTT
80011295 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (24 bp):
CCCTTTTAATAACTGGGGCATAAG
Found at i:80011373 original size:20 final size:20
Alignment explanation
Indices: 80011350--80011410 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
80011340 ATACATCACA
80011350 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
*
80011370 TGCATATCATACATGTCATG
1 TGCATATCATACATATCATG
*
80011390 TGCATATCATACATACCATG
1 TGCATATCATACATATCATG
80011410 T
1 T
80011411 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
TGCATATCATACATATCATG
Found at i:80011494 original size:24 final size:25
Alignment explanation
Indices: 80011447--80011494 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80011437 ATATATAAAC
* *
80011447 CCTAAGGGTAAAATGGTCATTTTTA
1 CCTAAGGGCAAAACGGTCATTTTTA
*
80011472 CCTAGGGGCAAAACGGTCATTTT
1 CCTAAGGGCAAAACGGTCATTTT
80011495 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAAGGGCAAAACGGTCATTTTTA
Found at i:80016024 original size:40 final size:40
Alignment explanation
Indices: 80015941--80016203 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
80015931 TTGAATGCTG
* * * * * *
80015941 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
80015981 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
80016021 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
80016061 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
80016101 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
80016141 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
80016180 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80016204 TGAATGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:80016223 original size:79 final size:80
Alignment explanation
Indices: 80015980--80016238 Score: 247
Period size: 80 Copynumber: 3.3 Consensus size: 80
80015970 AAGTGAATAT
* * * * * *
80015980 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
80016044 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
80016060 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
80016125 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
80016140 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* * *
80016204 TGAATGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
80016219 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
80016239 TACGTGATTT
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.30
80 94 0.61
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:80023620 original size:40 final size:40
Alignment explanation
Indices: 80023537--80023799 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
80023527 TTGAATGCTG
* * * * * *
80023537 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
80023577 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
80023617 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
80023657 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
80023697 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
80023737 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
80023776 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80023800 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:80023819 original size:79 final size:80
Alignment explanation
Indices: 80023576--80023834 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
80023566 AAGTGAATAT
* * * * * *
80023576 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
80023640 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
80023656 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
80023721 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
80023736 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
80023800 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
80023815 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
80023835 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:80027739 original size:27 final size:27
Alignment explanation
Indices: 80027708--80027885 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
80027698 TAATTTGTAC
80027708 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
80027735 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
80027761 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* *
80027789 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGATTATGT
* *
80027817 AGCACTAAGAGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* *
80027844 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
80027871 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80027886 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:80027822 original size:82 final size:81
Alignment explanation
Indices: 80027709--80027864 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
80027699 AATTTGTACA
* * * *
80027709 GCACTAAGTGTGCGATTTGATTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGTA-GCACTAAGTG
80027773 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
80027790 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGAGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGTAGCACTAAGTG
*
80027855 TGCGAGTTGA
65 TGCGAATTGA
80027865 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80027876 original size:82 final size:81
Alignment explanation
Indices: 80027705--80027885 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
80027695 GATTAATTTG
* * * *
80027705 TACAGCACTAAGTGTGCGATTTGATTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGATGCACTAA
80027770 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
80027786 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGAGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGAT-GCACT
* **
80027850 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80027868 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80027886 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80033529 original size:24 final size:24
Alignment explanation
Indices: 80033497--80033615 Score: 195
Period size: 24 Copynumber: 5.0 Consensus size: 24
80033487 ACTTTATCAT
**
80033497 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
* *
80033521 ATAATTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
80033545 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
80033568 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
80033592 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
80033616 CACTTCCTCC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
23 22 0.25
24 67 0.75
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:80033560 original size:47 final size:48
Alignment explanation
Indices: 80033496--80033613 Score: 193
Period size: 47 Copynumber: 2.5 Consensus size: 48
80033486 TACTTTATCA
*
80033496 TATAACTGGGGCATAAGCCCTTTCAATAATTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTT
**
80033544 TATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTT
*
80033591 GATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
80033614 TGCACTTCCT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
47 43 0.66
48 22 0.34
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTT
Found at i:80033692 original size:20 final size:20
Alignment explanation
Indices: 80033664--80033730 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
80033654 TTATGAATAC
*
80033664 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
80033684 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
80033704 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
80033724 ACCATGT
1 ATCATGT
80033731 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:80035832 original size:40 final size:40
Alignment explanation
Indices: 80035774--80035971 Score: 208
Period size: 40 Copynumber: 5.0 Consensus size: 40
80035764 TTTAACTGGA
* ** *
80035774 TATAGCAACTCGTTCAAATGCCTTCGGGACATAGCCCGGT
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
* *
80035814 TATAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-T
*
80035855 T-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG-
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
* ** *
80035892 AATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCGGA
1 TA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGT
* *
80035933 TATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
80035972 ACATCATTCG
Statistics
Matches: 132, Mismatches: 18, Indels: 16
0.80 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 31 0.23
40 85 0.64
41 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
Found at i:80035889 original size:79 final size:80
Alignment explanation
Indices: 80035790--80035972 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
80035780 AACTCGTTCA
* *
80035790 AATGCCTTCGGGACATAGCCCGG-TTATAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAATAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
80035853 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* ***
80035870 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTTCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
80035934 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
80035949 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
80035973 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:80041927 original size:21 final size:22
Alignment explanation
Indices: 80041903--80041943 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80041893 CCTTAGAAAT
80041903 AGGGC-ACACACCCATGTGGAA
1 AGGGCAACACACCCATGTGGAA
* *
80041924 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACACCCATGTGG
80041944 CCAATTCGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.27, C:0.29, G:0.34, T:0.10
Consensus pattern (22 bp):
AGGGCAACACACCCATGTGGAA
Found at i:80043271 original size:46 final size:45
Alignment explanation
Indices: 80043140--80043271 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 45
80043130 TATCTATGCT
* * *
80043140 GATGCCATGTCCCAGACATGGTCTTACACTG-ACACATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGCACTCGTCTCGTAGCA
*
80043186 GATGCATGTCCCAGACATGTCTTACACCGGCTTA-T-GTCTCG-AGGCA
1 GATGCATGTCCCAGACATGTCTTACA-CTGC--ACTCGTCTCGTA-GCA
*
80043232 GATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTC
1 GATGCATGTCCCAGACATGTCTTACACT-GCACTCGTCTC
80043272 AATACTAGTG
Statistics
Matches: 72, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
44 9 0.12
45 19 0.26
46 43 0.60
48 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGCACTCGTCTCGTAGCA
Found at i:80046389 original size:24 final size:24
Alignment explanation
Indices: 80046340--80046389 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
80046330 TTCGTGTGAT
* *
80046340 AACAATAATGCTATGTTATACTTG
1 AACAATAATGCTATGATATACATG
*
80046364 AACATTAATGCT-TGATATTACATG
1 AACAATAATGCTATGATA-TACATG
80046388 AA
1 AA
80046390 TTGTAAGTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (24 bp):
AACAATAATGCTATGATATACATG
Found at i:80052849 original size:29 final size:28
Alignment explanation
Indices: 80052802--80052929 Score: 139
Period size: 28 Copynumber: 4.5 Consensus size: 28
80052792 CATGAGATTG
* * **
80052802 GCACTAAGTGTTCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-AATTATATA
* *
80052831 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
* * *
80052859 GCACTAAGTGTGTGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTAATTATAT-A
*
80052888 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
80052916 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
80052930 GACTTACTAT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 44 0.51
29 42 0.49
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:80052868 original size:28 final size:28
Alignment explanation
Indices: 80052828--80052929 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
80052818 TTTAAATTGC
*
80052828 ATAGCACTAAGTGTGCAAGTTTGATTAT
1 ATAGCACTAAGTGTGCGAGTTTGATTAT
*
80052856 ATAGCACTAAGTGTGTGAGTTTGATTAT
1 ATAGCACTAAGTGTGCGAGTTTGATTAT
*
80052884 GTAAGCACTAAGTGTGCGAGTTTGATTAT
1 AT-AGCACTAAGTGTGCGAGTTTGATTAT
*
80052913 ATAACACTAAGTGTGCG
1 ATAGCACTAAGTGTGCG
80052930 GACTTACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 41 0.61
29 26 0.39
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (28 bp):
ATAGCACTAAGTGTGCGAGTTTGATTAT
Found at i:80057262 original size:47 final size:47
Alignment explanation
Indices: 80057210--80057617 Score: 618
Period size: 47 Copynumber: 8.6 Consensus size: 47
80057200 GATAATTGTG
* * *
80057210 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
80057257 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
80057306 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
80057355 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGTTGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
80057402 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
80057451 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
80057498 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGCGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
80057545 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
80057592 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
80057618 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 194 0.58
49 140 0.42
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:80057312 original size:96 final size:94
Alignment explanation
Indices: 80057210--80057617 Score: 600
Period size: 96 Copynumber: 4.3 Consensus size: 94
80057200 GATAATTGTG
*
80057210 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
80057275 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCAATGTGATGA
80057306 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
80057371 ATGTGATAAGGCCTAATGGCCAATGTGTTGA
64 ATGTGATAAGGCCTAATGGCCAATGTGATGA
80057402 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
80057467 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCAATGTGATGA
* * * *
80057498 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
80057563 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGATAAGGCCTAATGGCCAATGTGATGA
* * *
80057592 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAATGTATATATATGTGATAAG
80057618 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 99 0.34
95 2 0.01
96 137 0.47
97 2 0.01
98 50 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:80070924 original size:29 final size:29
Alignment explanation
Indices: 80070855--80070983 Score: 208
Period size: 29 Copynumber: 4.5 Consensus size: 29
80070845 TAAATTGCAT
*
80070855 AGCACTAAGTGTGCAAGTTTGATTATAT-
1 AGCACTAAGTGTGCGAGTTTGATTATATA
*
80070883 AGCACTAAGTGTGCGAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATATA
*
80070912 AGCACTAAGTGTGCGAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATATA
*
80070941 AGCACTAAGTGTGCGAGTTTGAGTATATA
1 AGCACTAAGTGTGCGAGTTTGATTATATA
80070970 A-CACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80070984 GACTTACTAT
Statistics
Matches: 96, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
28 39 0.41
29 57 0.59
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80070975 original size:57 final size:57
Alignment explanation
Indices: 80070855--80070983 Score: 206
Period size: 57 Copynumber: 2.3 Consensus size: 57
80070845 TAAATTGCAT
* * *
80070855 AGCACTAAGTGTGCAAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGAGTATATA
*
80070912 AGCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCGAGTTTGAGTATATA
1 AGCACTAAGTGTGCGAGTTTGATTATAT-AGCACTAAGTGTGCGAGTTTGAGTATATA
80070970 A-CACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80070984 GACTTACTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 39 0.58
58 28 0.42
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGAGTATATA
Found at i:80087282 original size:22 final size:21
Alignment explanation
Indices: 80087247--80087287 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
80087237 TTTTCCTTCT
* *
80087247 ATTTTATTTACTTTCTTATTA
1 ATTTTATATACTTTATTATTA
80087268 ATTTTAGTATACTTTATTAT
1 ATTTTA-TATACTTTATTAT
80087288 AAACTTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTTTATATACTTTATTATTA
Found at i:80090754 original size:20 final size:20
Alignment explanation
Indices: 80090688--80090754 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
80090678 ATTTTGATAA
*
80090688 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
80090708 ACATGACATGTATAATATGC
1 ACATGATATGTATGATATGC
80090728 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
80090748 ACGTGAT
1 ACATGAT
80090755 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:80090848 original size:24 final size:24
Alignment explanation
Indices: 80090803--80090950 Score: 253
Period size: 24 Copynumber: 6.2 Consensus size: 24
80090793 GAGGAAGTGC
*
80090803 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
80090826 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATT
*
80090850 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATT
80090874 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
80090898 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
80090922 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
80090946 AAAAG
1 AAAAG
80090951 AGGATAGGCG
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
23 13 0.11
24 108 0.89
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:80097414 original size:28 final size:28
Alignment explanation
Indices: 80097351--80097448 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
80097341 ATATTAAGTC
*
80097351 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
80097378 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
80097406 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
80097435 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80097449 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80102634 original size:40 final size:40
Alignment explanation
Indices: 80102574--80102827 Score: 316
Period size: 40 Copynumber: 6.3 Consensus size: 40
80102564 CTCGCACAAG
* * * *
80102574 GCCTTCGGGTCTTAGTCCGG-ATATGGTCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
* *
80102614 GCCTTCGAGACTTAGCCCGG-ATATAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
* * *
80102654 GCCTTCGGGGCTTAGCCCGAAATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
*
80102694 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
* *
80102734 GCCTTCAGGACTTAGCCCAGAATTAGTAACTCA-CACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACT-AGCACAAAT
* * *
80102774 GCCTTCGGGACTCAGCCCGGAATTAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
*
80102814 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
80102828 ACCCCGTTAG
Statistics
Matches: 190, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 187 0.98
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
Found at i:80104932 original size:46 final size:46
Alignment explanation
Indices: 80104865--80105039 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
80104855 AACCCGTCCC
* * *
80104865 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
* * * *
80104911 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA
* * **
80104957 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
80105004 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
80105040 CTCAACCATC
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 34 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
Found at i:80104998 original size:93 final size:93
Alignment explanation
Indices: 80104870--80105040 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80104860 GTCCCTAAGT
* ***
80104870 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80104935 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
80104963 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80105028 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80105041 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:80107157 original size:27 final size:27
Alignment explanation
Indices: 80107100--80107159 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
80107090 ACCCAGAGTC
*
80107100 ATTTTACCACATAAGGGCAAAACAATC
1 ATTTTACCACATAAGGGCAAAACAATA
* * * *
80107127 ATTTTACCCCATAAGGGGAAAATAGTA
1 ATTTTACCACATAAGGGCAAAACAATA
80107154 ATTTTA
1 ATTTTA
80107160 TTAATTTGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (27 bp):
ATTTTACCACATAAGGGCAAAACAATA
Found at i:80107411 original size:17 final size:18
Alignment explanation
Indices: 80107389--80107425 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
80107379 TTTACCCGTG
80107389 TGGGGCCCATA-AGCCCA
1 TGGGGCCCATACAGCCCA
80107406 TGGGGCCCATACAGCCCA
1 TGGGGCCCATACAGCCCA
80107424 TG
1 TG
80107426 TCAACCCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.22, C:0.35, G:0.30, T:0.14
Consensus pattern (18 bp):
TGGGGCCCATACAGCCCA
Found at i:80123576 original size:13 final size:13
Alignment explanation
Indices: 80123558--80123586 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80123548 TTTAGTTTAA
80123558 TTAGTTAATTAGT
1 TTAGTTAATTAGT
80123571 TTAGTTAATTAGT
1 TTAGTTAATTAGT
80123584 TTA
1 TTA
80123587 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:80123672 original size:73 final size:73
Alignment explanation
Indices: 80123586--80123730 Score: 281
Period size: 73 Copynumber: 2.0 Consensus size: 73
80123576 TAATTAGTTT
*
80123586 AATAAACAACCCCTCTTTATTTCTGGGTTAAATAATAAAAAGATAGTTATTACTAGTACTTTTGG
1 AATAAACAACCCCTCTTTATTTCTAGGTTAAATAATAAAAAGATAGTTATTACTAGTACTTTTGG
80123651 TTCCCTTA
66 TTCCCTTA
80123659 AATAAACAACCCCTCTTTATTTCTAGGTTAAATAATAAAAAGATAGTTATTACTAGTACTTTTGG
1 AATAAACAACCCCTCTTTATTTCTAGGTTAAATAATAAAAAGATAGTTATTACTAGTACTTTTGG
80123724 TTCCCTT
66 TTCCCTT
80123731 GGGTACGATA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (73 bp):
AATAAACAACCCCTCTTTATTTCTAGGTTAAATAATAAAAAGATAGTTATTACTAGTACTTTTGG
TTCCCTTA
Found at i:80130103 original size:13 final size:13
Alignment explanation
Indices: 80130085--80130113 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80130075 TTTAGTTTAA
80130085 TTAGTTAATTAGT
1 TTAGTTAATTAGT
80130098 TTAGTTAATTAGT
1 TTAGTTAATTAGT
80130111 TTA
1 TTA
80130114 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:80133623 original size:13 final size:13
Alignment explanation
Indices: 80133605--80133631 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80133595 GCTTGGCAAG
80133605 GACACGCCCGTGT
1 GACACGCCCGTGT
80133618 GACACGCCCGTGT
1 GACACGCCCGTGT
80133631 G
1 G
80133632 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:80136099 original size:9 final size:9
Alignment explanation
Indices: 80136093--80136118 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80136083 AACTAACATA
80136093 AAGAACAAC
1 AAGAACAAC
80136102 AAGAACAAC
1 AAGAACAAC
80136111 AAGAACAA
1 AAGAACAA
80136119 GAAGTAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.19, G:0.12, T:0.00
Consensus pattern (9 bp):
AAGAACAAC
Found at i:80136500 original size:20 final size:21
Alignment explanation
Indices: 80136466--80136504 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
80136456 TCCTCTTTGG
*
80136466 AAGGTGGATATCGCGATACGC
1 AAGGTGGATACCGCGATACGC
80136487 AAGG-GGATACCGCGATAC
1 AAGGTGGATACCGCGATAC
80136505 CACTAAAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.31, C:0.21, G:0.33, T:0.15
Consensus pattern (21 bp):
AAGGTGGATACCGCGATACGC
Found at i:80140168 original size:22 final size:22
Alignment explanation
Indices: 80140137--80140183 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
80140127 AAAATCAAAT
*
80140137 AGGGTTGGTATTGCGATATT-G
1 AGGGTTGGTATCGCGATATTAG
80140158 AGGGTATGGTATCGCGATATTAG
1 AGGGT-TGGTATCGCGATATTAG
80140181 AGG
1 AGG
80140184 CAGACCACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.22
22 14 0.61
23 4 0.17
ACGTcount: A:0.23, C:0.06, G:0.38, T:0.32
Consensus pattern (22 bp):
AGGGTTGGTATCGCGATATTAG
Found at i:80143323 original size:27 final size:27
Alignment explanation
Indices: 80143293--80143469 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
80143283 AAATTGTACA
* *
80143293 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
80143320 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
80143347 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
80143374 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
80143402 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
80143429 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
80143456 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80143470 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:80143406 original size:82 final size:81
Alignment explanation
Indices: 80143293--80143448 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
80143283 AAATTGTACA
* * * *
80143293 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
80143357 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
80143374 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
80143439 TGCGAGTTGA
65 TGCGAATTGA
80143449 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80146366 original size:10 final size:10
Alignment explanation
Indices: 80146351--80146376 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
80146341 AAAAAGGTTG
80146351 ATATATACAT
1 ATATATACAT
80146361 ATATATACAT
1 ATATATACAT
80146371 ATATAT
1 ATATAT
80146377 TTCTGGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (10 bp):
ATATATACAT
Found at i:80148078 original size:27 final size:27
Alignment explanation
Indices: 80148041--80148203 Score: 220
Period size: 27 Copynumber: 6.0 Consensus size: 27
80148031 TAAATTGTGC
*
80148041 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
80148068 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
80148095 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGT
* *
80148122 AGCACTAAGTGTGCGAGTATGATTGTGT
1 AGCACTAAGTGTGCGAGT-TGAATATGT
* *
80148150 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGAATATGT
* *
80148177 AGCACTGAGTGTGCAGACTT-AATATGT
1 AGCACTAAGTGTGC-GAGTTGAATATGT
80148204 TTTTGAATCA
Statistics
Matches: 124, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
27 95 0.77
28 29 0.23
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGAATATGT
Found at i:80148105 original size:54 final size:55
Alignment explanation
Indices: 80148041--80148190 Score: 230
Period size: 55 Copynumber: 2.7 Consensus size: 55
80148031 TAAATTGTGC
*
80148041 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGT-TGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
80148095 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTGTGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
80148150 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGC
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGC
80148191 AGACTTAATA
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
54 43 0.49
55 45 0.51
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:80148162 original size:82 final size:81
Alignment explanation
Indices: 80148041--80148190 Score: 237
Period size: 82 Copynumber: 1.8 Consensus size: 81
80148031 TAAATTGTGC
*
80148041 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTG
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
80148106 TGCGAGTTGACTATGT
66 TGCGAGTTGACTATGT
* * * * *
80148122 AGCACTAAGTGTGCGAGTATGATTGTGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAT-TGAATATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGT
80148187 GTGC
65 GTGC
80148191 AGACTTAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
TGCGAGTTGACTATGT
Found at i:80150530 original size:25 final size:26
Alignment explanation
Indices: 80150496--80150545 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
80150486 TATCTGTTTA
* *
80150496 TATTTGTATATT-TTATTTTTATTTC
1 TATTTCTATATTATTATTATTATTTC
80150521 TATTTCTATATTATTATTATTATTT
1 TATTTCTATATTATTATTATTATTT
80150546 AACTGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (26 bp):
TATTTCTATATTATTATTATTATTTC
Found at i:80163477 original size:3 final size:3
Alignment explanation
Indices: 80163469--80163521 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
80163459 TATCCTTTTC
*
80163469 TCT TCT TCT TCT T-T TCT TCT TCT TCT TCT TCT TCT TCT TCT CCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
80163516 TCT TCT
1 TCT TCT
80163522 CTTTTGCCAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:80171977 original size:21 final size:22
Alignment explanation
Indices: 80171938--80171980 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
80171928 GGTCTACTTA
80171938 TTTAAACAAGAATTCAAATATT
1 TTTAAACAAGAATTCAAATATT
* *
80171960 TTTAAA-AATAATTTAAATATT
1 TTTAAACAAGAATTCAAATATT
80171981 ATATGTAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (22 bp):
TTTAAACAAGAATTCAAATATT
Found at i:80174923 original size:16 final size:15
Alignment explanation
Indices: 80174897--80174926 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
80174887 TGACTCTAGG
80174897 TTGATTAATTAAAAT
1 TTGATTAATTAAAAT
80174912 TTGATCTAATTAAAA
1 TTGAT-TAATTAAAA
80174927 CCCTTATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (15 bp):
TTGATTAATTAAAAT
Found at i:80176974 original size:24 final size:24
Alignment explanation
Indices: 80176943--80176991 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
80176933 TAACAAATAA
*
80176943 AAATAAAACAACTGAAAAT-AAAAT
1 AAATAAAACAAAT-AAAATGAAAAT
80176967 AAATAAAACAAATAAAATGAAAAT
1 AAATAAAACAAATAAAATGAAAAT
80176991 A
1 A
80176992 GATCAGTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.73, C:0.06, G:0.04, T:0.16
Consensus pattern (24 bp):
AAATAAAACAAATAAAATGAAAAT
Found at i:80177269 original size:16 final size:15
Alignment explanation
Indices: 80177248--80177281 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
80177238 TAATAGTTAA
80177248 AATAATAAACTAAAAT
1 AATAATAAA-TAAAAT
*
80177264 AATAATAAATATAAT
1 AATAATAAATAAAAT
80177279 AAT
1 AAT
80177282 TGTTATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (15 bp):
AATAATAAATAAAAT
Found at i:80179598 original size:135 final size:135
Alignment explanation
Indices: 80179356--80179626 Score: 542
Period size: 135 Copynumber: 2.0 Consensus size: 135
80179346 AAAGCAATTC
80179356 ATCTTGCTAATGTTGGTGAGTTTACATCCCAAGTTTTCAATGATTATTGCATGTCAATTGGGATA
1 ATCTTGCTAATGTTGGTGAGTTTACATCCCAAGTTTTCAATGATTATTGCATGTCAATTGGGATA
80179421 AGAGTTGAACATCCTGTAGCTCATGTTCACACACAAAATGATTTAGCTAAACTGTTTATCAAATG
66 AGAGTTGAACATCCTGTAGCTCATGTTCACACACAAAATGATTTAGCTAAACTGTTTATCAAATG
80179486 CCTCT
131 CCTCT
80179491 ATCTTGCTAATGTTGGTGAGTTTACATCCCAAGTTTTCAATGATTATTGCATGTCAATTGGGATA
1 ATCTTGCTAATGTTGGTGAGTTTACATCCCAAGTTTTCAATGATTATTGCATGTCAATTGGGATA
80179556 AGAGTTGAACATCCTGTAGCTCATGTTCACACACAAAATGATTTAGCTAAACTGTTTATCAAATG
66 AGAGTTGAACATCCTGTAGCTCATGTTCACACACAAAATGATTTAGCTAAACTGTTTATCAAATG
80179621 CCTCT
131 CCTCT
80179626 A
1 A
80179627 AATAATAGCT
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
135 136 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (135 bp):
ATCTTGCTAATGTTGGTGAGTTTACATCCCAAGTTTTCAATGATTATTGCATGTCAATTGGGATA
AGAGTTGAACATCCTGTAGCTCATGTTCACACACAAAATGATTTAGCTAAACTGTTTATCAAATG
CCTCT
Found at i:80179649 original size:12 final size:12
Alignment explanation
Indices: 80179632--80179657 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80179622 CTCTAAATAA
80179632 TAGCTAAATCAT
1 TAGCTAAATCAT
80179644 TAGCTAAATCAT
1 TAGCTAAATCAT
80179656 TA
1 TA
80179658 CTTATGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
TAGCTAAATCAT
Found at i:80182135 original size:30 final size:30
Alignment explanation
Indices: 80182051--80182128 Score: 111
Period size: 30 Copynumber: 2.6 Consensus size: 30
80182041 GGCACATGGC
* * *
80182051 CGTGTCTCTAGCCCATGTGTCTCACACGGT
1 CGTGTCTCTAGCCCGTGTGTCTCACACAGA
* *
80182081 CGTGTCTCTAACCCGTGTGTCTCACATAGA
1 CGTGTCTCTAGCCCGTGTGTCTCACACAGA
80182111 CGTGTCTCTAGCCCGTGT
1 CGTGTCTCTAGCCCGTGT
80182129 AACTCACTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.14, C:0.32, G:0.23, T:0.31
Consensus pattern (30 bp):
CGTGTCTCTAGCCCGTGTGTCTCACACAGA
Found at i:80190375 original size:6 final size:6
Alignment explanation
Indices: 80190355--80190389 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
80190345 AAGGAATTTT
*
80190355 AAAT-A AAATAG AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
80190390 TAGTAAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:80194719 original size:18 final size:19
Alignment explanation
Indices: 80194698--80194738 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
80194688 AATGAAATGG
80194698 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
80194716 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
80194735 GAAA
1 GAAA
80194739 CATGAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:80196895 original size:41 final size:40
Alignment explanation
Indices: 80196819--80196904 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
80196809 CAAATACATT
*
80196819 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATTATAC
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAA-TATAA
* * * * **
80196860 TAAAACAATTCTTAAAACAATACACAAATTGAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
80196900 TAAAA
1 TAAAA
80196905 AGTGATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 9 0.24
41 29 0.76
ACGTcount: A:0.65, C:0.10, G:0.02, T:0.22
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:80197862 original size:16 final size:16
Alignment explanation
Indices: 80197841--80197875 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
80197831 TTATCATACT
80197841 TTCCTTATTAAATCTA
1 TTCCTTATTAAATCTA
80197857 TTCCTTATTAAATCTA
1 TTCCTTATTAAATCTA
80197873 TTC
1 TTC
80197876 ATTAACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (16 bp):
TTCCTTATTAAATCTA
Found at i:80198152 original size:47 final size:44
Alignment explanation
Indices: 80198051--80198214 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 44
80198041 ATGTGCTAAC
* * *
80198051 GCATGTCCCAGACATGTCTTACACTAGCACGATGCT-TAGTCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCACCAT-CTCTAGGCGAT
* *
80198095 GCATGTCCCAGACACGTCTTACACTGGCTACCATCATCGAGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTGGC-ACCATC-TCTAGGC-GAT
*
80198142 GCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCAC-CATCTCTA-GGCGAT
80198188 GCCATGTCCCAGACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
80198215 AGCTCTCACA
Statistics
Matches: 104, Mismatches: 8, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
44 27 0.26
45 5 0.05
46 12 0.12
47 50 0.48
48 10 0.10
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTGGCACCATCTCTAGGCGAT
Found at i:80200022 original size:359 final size:359
Alignment explanation
Indices: 80199475--80200195 Score: 1397
Period size: 359 Copynumber: 2.0 Consensus size: 359
80199465 CCCTGAAAAT
80199475 CTTACCGGTGAATAAGTTCGGATATTGCTCTCTCAAAGACTCTTTAGGTTCCCATGTGGCTTCCT
1 CTTACCGGTGAATAAGTTCGGATATTGCTCTCTCAAAGACTCTTTAGGTTCCCATGTGGCTTCCT
*
80199540 CGACTCTATGTCTATGCCACAAAATCTTCACAAGTGGTATATTCTTGTTTCTTAATTGTTTGACC
66 CGACTCCATGTCTATGCCACAAAATCTTCACAAGTGGTATATTCTTGTTTCTTAATTGTTTGACC
80199605 GCTCGAGCTAAGATCTTGACCGTCTCCTCACCATAAGTCATATCTGGAATAATCTCAACTTCAGT
131 GCTCGAGCTAAGATCTTGACCGTCTCCTCACCATAAGTCATATCTGGAATAATCTCAACTTCAGT
* *
80199670 TGGCGCAATTACATGCGAAGGGTCAGATCTGTATCGGCGTAACATAGACACGTGAAATACATCAT
196 TGGCACAATTACATGCGAAGGGTCAGATCTGTATCGGCGTAACATAGACACGTGAAACACATCAT
*
80199735 GAATCTTTTCTAACTCTGGTGGCAAATCCAAATGGTAGGCAACAGGCCCTACTCTCTCGATAACT
261 GAATCTTTTCTAACTCTGGTGGCAAATCCAAATGGTAGGCAACAAGCCCTACTCTCTCGATAACT
80199800 TCATAAGGTCCTATGAAACGATGACTCAACTTGC
326 TCATAAGGTCCTATGAAACGATGACTCAACTTGC
80199834 CTTACCGGTGAATAAGTTCGGATATTGCTCTCTCAAAGACTCTTTAGGTTCCCATGTGGCTTCCT
1 CTTACCGGTGAATAAGTTCGGATATTGCTCTCTCAAAGACTCTTTAGGTTCCCATGTGGCTTCCT
80199899 CGACTCCATGTCTATGCCACAAAATCTTCACAAGTGGTATATTCTTGTTTCTTAATTGTTTGACC
66 CGACTCCATGTCTATGCCACAAAATCTTCACAAGTGGTATATTCTTGTTTCTTAATTGTTTGACC
80199964 GCTCGAGCTAAGATCTTGACCGTCTCCTCACCATAAGTCATATCTGGAATAATCTCAACTTCAGT
131 GCTCGAGCTAAGATCTTGACCGTCTCCTCACCATAAGTCATATCTGGAATAATCTCAACTTCAGT
80200029 TGGCACAATTACATGCGAAGGGTCAGATCTGTATCGGCGTAACATAGACACGTGAAACACATCAT
196 TGGCACAATTACATGCGAAGGGTCAGATCTGTATCGGCGTAACATAGACACGTGAAACACATCAT
*
80200094 GGATCTTTTCTAACTCTGGTGGCAAATCCAAATGGTAGGCAACAAGCCCTACTCTCTCGATAACT
261 GAATCTTTTCTAACTCTGGTGGCAAATCCAAATGGTAGGCAACAAGCCCTACTCTCTCGATAACT
80200159 TCATAAGGTCCTATGAAACGATGACTCAACTTGC
326 TCATAAGGTCCTATGAAACGATGACTCAACTTGC
80200193 CTT
1 CTT
80200196 TTCTACCAAA
Statistics
Matches: 357, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
359 357 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (359 bp):
CTTACCGGTGAATAAGTTCGGATATTGCTCTCTCAAAGACTCTTTAGGTTCCCATGTGGCTTCCT
CGACTCCATGTCTATGCCACAAAATCTTCACAAGTGGTATATTCTTGTTTCTTAATTGTTTGACC
GCTCGAGCTAAGATCTTGACCGTCTCCTCACCATAAGTCATATCTGGAATAATCTCAACTTCAGT
TGGCACAATTACATGCGAAGGGTCAGATCTGTATCGGCGTAACATAGACACGTGAAACACATCAT
GAATCTTTTCTAACTCTGGTGGCAAATCCAAATGGTAGGCAACAAGCCCTACTCTCTCGATAACT
TCATAAGGTCCTATGAAACGATGACTCAACTTGC
Found at i:80207381 original size:16 final size:15
Alignment explanation
Indices: 80207360--80207394 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
80207350 AATATAAACA
80207360 AAATTGAAATAAAATT
1 AAATTGAAATAAAA-T
*
80207376 AAATTGGAATAAAAT
1 AAATTGAAATAAAAT
80207391 AAAT
1 AAAT
80207395 GGCTAAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.29
Consensus pattern (15 bp):
AAATTGAAATAAAAT
Done.