Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 244 of 356
Found at i:80209742 original size:37 final size:37
Alignment explanation
Indices: 80209685--80209760 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
80209675 AGTATGATTG
* *
80209685 GTAAGGTTCGTGACCAATTTAATTACTGTATTTTTAT
1 GTAAGATTCGAGACCAATTTAATTACTGTATTTTTAT
* * *
80209722 GTAAGATTCGAGACCTATTTAATTATTGTCTTTTTAT
1 GTAAGATTCGAGACCAATTTAATTACTGTATTTTTAT
80209759 GT
1 GT
80209761 CTTTTCGTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (37 bp):
GTAAGATTCGAGACCAATTTAATTACTGTATTTTTAT
Found at i:80210465 original size:18 final size:18
Alignment explanation
Indices: 80210444--80210489 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 18
80210434 ATATTAAATG
*
80210444 TAAAAATGTGATTTTTAA
1 TAAAAATGTGATTTTAAA
80210462 TAAAAAT-T-ATTTTAAA
1 TAAAAATGTGATTTTAAA
*
80210478 GATAAAATGTGA
1 TA-AAAATGTGA
80210490 AACTGATACC
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
16 8 0.35
17 6 0.26
18 8 0.35
19 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (18 bp):
TAAAAATGTGATTTTAAA
Found at i:80210740 original size:19 final size:20
Alignment explanation
Indices: 80210716--80210754 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80210706 AAAGGGTGAG
80210716 AAATAAAAA-TTTAGGGGGA
1 AAATAAAAAGTTTAGGGGGA
*
80210735 AAATAAAAAGTTTTGGGGGA
1 AAATAAAAAGTTTAGGGGGA
80210755 TAAAAGTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (20 bp):
AAATAAAAAGTTTAGGGGGA
Found at i:80211062 original size:27 final size:27
Alignment explanation
Indices: 80211032--80211083 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
80211022 GGATGGAAGG
* *
80211032 GGAGTAAAAGTTTTGAGGGGAAAGTGA
1 GGAGTAAAAGTTTTAAGGGAAAAGTGA
80211059 GGAGTAAAAGTTTTAAGGGAAAAGT
1 GGAGTAAAAGTTTTAAGGGAAAAGT
80211084 AAAAAAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (27 bp):
GGAGTAAAAGTTTTAAGGGAAAAGTGA
Found at i:80216301 original size:26 final size:26
Alignment explanation
Indices: 80216272--80216335 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
80216262 AACCAAGATG
*
80216272 GGTCGGAGG-TCTCTTAAGTTTGAGTA
1 GGTCGGAGGACCT-TTAAGTTTGAGTA
* *
80216298 GGTCGGAGGACCTTTGAGTTTGAGTT
1 GGTCGGAGGACCTTTAAGTTTGAGTA
*
80216324 GGTCAGAGGACC
1 GGTCGGAGGACC
80216336 ATGAGCGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 31 0.94
27 2 0.06
ACGTcount: A:0.19, C:0.14, G:0.38, T:0.30
Consensus pattern (26 bp):
GGTCGGAGGACCTTTAAGTTTGAGTA
Found at i:80217250 original size:12 final size:12
Alignment explanation
Indices: 80217233--80217262 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80217223 GGCCACACAC
80217233 GGCCGTGTGCCA
1 GGCCGTGTGCCA
*
80217245 GGCCGTGTGCTA
1 GGCCGTGTGCCA
80217257 GGCCGT
1 GGCCGT
80217263 TCCAAACCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.43, T:0.20
Consensus pattern (12 bp):
GGCCGTGTGCCA
Found at i:80219073 original size:23 final size:23
Alignment explanation
Indices: 80219042--80219093 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
80219032 TATTTATCTA
*
80219042 ACAACAAGCATGCATTGTCTATC
1 ACAAAAAGCATGCATTGTCTATC
* *
80219065 ACAAAAAGCATGTATTTTCTATC
1 ACAAAAAGCATGCATTGTCTATC
80219088 ATCAAA
1 A-CAAA
80219094 CATCAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (23 bp):
ACAAAAAGCATGCATTGTCTATC
Found at i:80222589 original size:7 final size:7
Alignment explanation
Indices: 80222574--80222631 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
80222564 TGAACCATAT
*
80222574 ACCTCAA
1 ACCTTAA
80222581 ACCTTAA
1 ACCTTAA
80222588 ACAC--AA
1 AC-CTTAA
80222594 ACC-TAA
1 ACCTTAA
*
80222600 ACCCTAA
1 ACCTTAA
*
80222607 ACCTTGA
1 ACCTTAA
*
80222614 ACCTTGA
1 ACCTTAA
80222621 ACCTTAA
1 ACCTTAA
80222628 ACCT
1 ACCT
80222632 CGAATCTCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
5 1 0.02
6 9 0.20
7 33 0.75
8 1 0.02
ACGTcount: A:0.41, C:0.34, G:0.03, T:0.21
Consensus pattern (7 bp):
ACCTTAA
Found at i:80222710 original size:13 final size:13
Alignment explanation
Indices: 80222689--80222714 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80222679 CTAGGTTTAA
80222689 AGTTTAGGGTTTG
1 AGTTTAGGGTTTG
80222702 AGTTTAGGGTTTG
1 AGTTTAGGGTTTG
80222715 GGGCCCGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (13 bp):
AGTTTAGGGTTTG
Found at i:80222842 original size:28 final size:27
Alignment explanation
Indices: 80222809--80222869 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 27
80222799 AGGGTTTAGT
80222809 GTTTAAGGCTCATGGTTTGATGTTTGGG
1 GTTTAAGGCTCATGGTTTGAT-TTTGGG
*
80222837 GTTTAAGGTTCATGGTTTGATTTTGGG
1 GTTTAAGGCTCATGGTTTGATTTTGGG
*
80222864 GCTTAA
1 GTTTAA
80222870 AAAATTACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 11 0.35
28 20 0.65
ACGTcount: A:0.16, C:0.07, G:0.33, T:0.44
Consensus pattern (27 bp):
GTTTAAGGCTCATGGTTTGATTTTGGG
Found at i:80223625 original size:17 final size:17
Alignment explanation
Indices: 80223603--80223635 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80223593 TTTGATGTAT
80223603 TATATTTAAAAA-AATAA
1 TATA-TTAAAAATAATAA
80223620 TATATTAAAAATAATA
1 TATATTAAAAATAATA
80223636 TAAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TATATTAAAAATAATAA
Found at i:80223641 original size:12 final size:12
Alignment explanation
Indices: 80223611--80223648 Score: 58
Period size: 12 Copynumber: 3.0 Consensus size: 12
80223601 ATTATATTTA
80223611 AAAAAATAATAT
1 AAAAAATAATAT
80223623 ATTAAAAATAATAT
1 A--AAAAATAATAT
80223637 AAAAAATAATAT
1 AAAAAATAATAT
80223649 GGGCTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAAAATAATAT
Found at i:80228972 original size:20 final size:20
Alignment explanation
Indices: 80228947--80228984 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
80228937 TACACATATA
80228947 TATACCATAGTTAAGACTTT
1 TATACCATAGTTAAGACTTT
80228967 TATACCATAGTTAAGACT
1 TATACCATAGTTAAGACT
80228985 ATAATTTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (20 bp):
TATACCATAGTTAAGACTTT
Found at i:80230149 original size:20 final size:20
Alignment explanation
Indices: 80230111--80230158 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
80230101 CCAACCTTTT
80230111 AAATATAATTTAAAACTAAAG
1 AAATA-AATTTAAAACTAAAG
* * *
80230132 TAATAAATTTGAATCTAAAG
1 AAATAAATTTAAAACTAAAG
80230152 AAATAAA
1 AAATAAA
80230159 AACAATTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.29
Consensus pattern (20 bp):
AAATAAATTTAAAACTAAAG
Found at i:80231850 original size:20 final size:20
Alignment explanation
Indices: 80231820--80231858 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
80231810 AAAATAGTGA
80231820 AAATTTATTTTCTA-AATAT
1 AAATTTATTTTCTAGAATAT
80231839 AAATTATATTTTCTAGAATA
1 AAATT-TATTTTCTAGAATA
80231859 ACAATTCTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 9 0.50
21 4 0.22
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.49
Consensus pattern (20 bp):
AAATTTATTTTCTAGAATAT
Found at i:80234566 original size:23 final size:23
Alignment explanation
Indices: 80234494--80234577 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 23
80234484 CTCAGGGGCG
* * *
80234494 TTACAGAATGTGCCATACAGGCG
1 TTACAGAATATGCCATATAGGCA
* * * * *
80234517 TCACATAATACGCTATATAGGCT
1 TTACAGAATATGCCATATAGGCA
80234540 TTACAGAATATGCCATATAGGCA
1 TTACAGAATATGCCATATAGGCA
* *
80234563 TTACCGGATATGCCA
1 TTACAGAATATGCCA
80234578 CAAAGACTTT
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (23 bp):
TTACAGAATATGCCATATAGGCA
Found at i:80242066 original size:27 final size:26
Alignment explanation
Indices: 80242036--80242239 Score: 192
Period size: 27 Copynumber: 7.5 Consensus size: 26
80242026 AAATTGTACA
80242036 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* *
80242063 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* * *
80242090 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
80242117 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
80242144 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * *
80242172 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
80242199 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
80242226 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80242240 GGCTCAATAT
Statistics
Matches: 154, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 25 0.16
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:80242096 original size:54 final size:53
Alignment explanation
Indices: 80242036--80242239 Score: 221
Period size: 54 Copynumber: 3.8 Consensus size: 53
80242026 AAATTGTACA
* * *
80242036 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * ** *
80242090 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTA-GCACTAAGTGTGCGAATTGAATATGTG
* * *
80242144 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * *
80242199 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
80242240 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 77 0.61
55 48 0.38
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
Found at i:80242230 original size:109 final size:108
Alignment explanation
Indices: 80242036--80242239 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 108
80242026 AAATTGTACA
* * * *
80242036 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
80242101 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
80242144 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
80242209 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
80242240 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:80250115 original size:27 final size:26
Alignment explanation
Indices: 80250084--80250261 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
80250074 TAAATTGTAC
80250084 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
80250111 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
80250137 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
80250165 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
80250193 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
80250220 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
80250247 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80250262 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:80250200 original size:82 final size:81
Alignment explanation
Indices: 80250085--80250240 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80250075 AAATTGTACA
* * *
80250085 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
80250149 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
80250166 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
80250231 TGCGAGTTGA
65 TGCGAATTGA
80250241 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80250252 original size:82 final size:81
Alignment explanation
Indices: 80250081--80250261 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
80250071 GATTAAATTG
* * *
80250081 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
80250146 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
80250162 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
80250226 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80250244 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80250262 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80252439 original size:21 final size:22
Alignment explanation
Indices: 80252413--80252462 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
80252403 AATTTTAAAC
*
80252413 TATTATCCATTTTAA-ATTTTA
1 TATTATCCATTTTAACATTATA
**
80252434 TATTATTTATTTTAACTATTATA
1 TATTATCCATTTTAAC-ATTATA
80252457 TATTAT
1 TATTAT
80252463 TTATTTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 13 0.54
23 11 0.46
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTATCCATTTTAACATTATA
Found at i:80252447 original size:14 final size:14
Alignment explanation
Indices: 80252428--80252486 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
80252418 TCCATTTTAA
80252428 ATTTTATATTATTT
1 ATTTTATATTATTT
*
80252442 ATTTTA-ACTA-TT
1 ATTTTATATTATTT
80252454 A---TATATTATTT
1 ATTTTATATTATTT
80252465 ATTTTGA-ATTATTT
1 ATTTT-ATATTATTT
80252479 -TTTTATAT
1 ATTTTATAT
80252487 ATATCTTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 15
0.68 0.04 0.28
Matches are distributed among these distances:
9 2 0.06
10 3 0.08
11 3 0.08
12 4 0.11
13 9 0.25
14 14 0.39
15 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (14 bp):
ATTTTATATTATTT
Found at i:80252627 original size:27 final size:24
Alignment explanation
Indices: 80252573--80252696 Score: 99
Period size: 26 Copynumber: 4.9 Consensus size: 24
80252563 TTATATGCTA
* * *
80252573 TTTAAAGTGTCTTATATATATATAC
1 TTTAAATTGTTTTATAT-TATTTAC
80252598 TTTAAAATTGCTTTGTATATTATTTAC
1 TTT-AAATTG-TTT-TATATTATTTAC
* *
80252625 TTTAATTTGTTTTACATATTGA-TTAT
1 TTTAAATTGTTTT--ATATT-ATTTAC
80252651 TTTAAATTGTTTTATATTATTTAC
1 TTTAAATTGTTTTATATTATTTAC
* *
80252675 -TTCAATTTTTTATATATTATTT
1 TTTAAATTGTTT-TATATTATTT
80252697 TGTTTCGTTT
Statistics
Matches: 82, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
23 10 0.12
24 19 0.23
25 6 0.07
26 30 0.37
27 12 0.15
28 5 0.06
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.59
Consensus pattern (24 bp):
TTTAAATTGTTTTATATTATTTAC
Found at i:80252690 original size:24 final size:24
Alignment explanation
Indices: 80252613--80252696 Score: 73
Period size: 24 Copynumber: 3.4 Consensus size: 24
80252603 AATTGCTTTG
*
80252613 TATATTATTTACTTTAATTTGTTTTA
1 TATATTATTTAC-TTAAATT-TTTTA
* * *
80252639 CATATTGA-TTATTTTAAATTGTTT-
1 TATATT-ATTTA-CTTAAATTTTTTA
*
80252663 TATATTATTTACTTCAATTTTTTA
1 TATATTATTTACTTAAATTTTTTA
80252687 TATATTATTT
1 TATATTATTT
80252697 TGTTTCGTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
23 10 0.22
24 18 0.39
25 3 0.07
26 14 0.30
27 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.63
Consensus pattern (24 bp):
TATATTATTTACTTAAATTTTTTA
Found at i:80273118 original size:48 final size:48
Alignment explanation
Indices: 80273066--80273189 Score: 176
Period size: 48 Copynumber: 2.6 Consensus size: 48
80273056 CCTGGATATG
* *
80273066 GTCTTACATGGGATCACATATCGATGTCAATGCCATGTCCCAGACATA
1 GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAACATA
* * * * *
80273114 GTCTTACATGGGATCATAGATCAATACCAATGCCATGTCCCAAACATG
1 GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAACATA
*
80273162 GTCTTACATGGGATCACATATTGATGCC
1 GTCTTACATGGGATCACATATCGATGCC
80273190 GATAGCCCAG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (48 bp):
GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAACATA
Found at i:80275121 original size:44 final size:44
Alignment explanation
Indices: 80275055--80275457 Score: 341
Period size: 44 Copynumber: 8.9 Consensus size: 44
80275045 CACCATAGCG
* * * *
80275055 AATCTTATCTCTTTGAAATTGCAGTAGAGTAGATTAAAGCTACA
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCTACA
* *
80275099 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTATA
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCTACA
* * *
80275143 AATCTTATTTCCTTGAAGTTGCAGTGGAGCATATTGAAGCTACA
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCTACA
* *
80275187 AATCTTATCTCCTTGAAATTGCAGTAGAGTAGATTGAAGCTACA
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCTACA
** * * *
80275231 AATCTTATCTCGC-TGAAGTTATAGTGAAGCAGATTGAAG-TGAAA
1 AATCTTATCTC-CTTGAAGTTGCAGTGGAGTAGATTGAAGCT-ACA
* * *
80275275 AATCCTT-TAC-CTTTGAAGTTGCAGTGG-GTCAGATTAAATCTACCATA
1 AAT-CTTAT-CTCCTTGAAGTTGCAGTGGAGT-AGATTGAAGCTA-C--A
* * * * *
80275322 ACGAGTCTTATTTCCCTAAAGTTGCAGTGGAACGGATTAAGGTTACAAGCTACA
1 A--A-TCTTATCTCCTTGAAGTTGCAGTGG-A--G--T-AGATT-GAAGCTACA
* *
80275376 AATCTTATCTTCC-TGAAGTTGCAGTGGAGTAGATCGAAGCTACG
1 AATCTTATC-TCCTTGAAGTTGCAGTGGAGTAGATTGAAGCTACA
* *
80275420 AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAA
80275458 ACTAAGATTC
Statistics
Matches: 290, Mismatches: 45, Indels: 48
0.76 0.12 0.13
Matches are distributed among these distances:
43 5 0.02
44 214 0.74
45 9 0.03
46 1 0.00
47 2 0.01
48 1 0.00
49 4 0.01
50 17 0.06
51 19 0.07
52 4 0.01
54 3 0.01
56 6 0.02
57 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCTACA
Found at i:80275478 original size:44 final size:44
Alignment explanation
Indices: 80275376--80275490 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 44
80275366 ACAAGCTACA
* * * *
80275376 AATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATCGAAGCTACG
1 AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAACTAAG
*
80275420 AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAACTAAG
1 AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAACTAAG
* *
80275464 ATTC-CTATAC-CCCTGAAGTTGTAGTGG
1 AATCTC-AT-CTCCCTGAAGTTGCAGTGG
80275491 GTTAGAATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
43 1 0.02
44 60 0.97
45 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (44 bp):
AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAACTAAG
Found at i:80277022 original size:4 final size:4
Alignment explanation
Indices: 80277013--80277054 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
80277003 TTATAAACTG
* *
80277013 TTTA TTTA TTTA TTTA -TTA TTTC TTTA TTT- TTTA TATA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
80277055 AAAATTATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 6 0.19
4 26 0.81
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:80277032 original size:15 final size:15
Alignment explanation
Indices: 80277014--80277054 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
80277004 TATAAACTGT
80277014 TTATTTATTTATTTA
1 TTATTTATTTATTTA
* *
80277029 TTATTTCTTTATTTT
1 TTATTTATTTATTTA
*
80277044 TTATATATTTA
1 TTATTTATTTA
80277055 AAAATTATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTTATTTATTTA
Found at i:80280194 original size:101 final size:101
Alignment explanation
Indices: 80280019--80280221 Score: 406
Period size: 101 Copynumber: 2.0 Consensus size: 101
80280009 AACCTCAAAC
80280019 CTTCAATTATTCCATGGTGGTAAATTATTTACAGAAACAACCCAATAGCTAAATCTGGCCAAATG
1 CTTCAATTATTCCATGGTGGTAAATTATTTACAGAAACAACCCAATAGCTAAATCTGGCCAAATG
80280084 ATCAACTCCAAGGTTAGTTCCCACAATTTAATTCTT
66 ATCAACTCCAAGGTTAGTTCCCACAATTTAATTCTT
80280120 CTTCAATTATTCCATGGTGGTAAATTATTTACAGAAACAACCCAATAGCTAAATCTGGCCAAATG
1 CTTCAATTATTCCATGGTGGTAAATTATTTACAGAAACAACCCAATAGCTAAATCTGGCCAAATG
80280185 ATCAACTCCAAGGTTAGTTCCCACAATTTAATTCTT
66 ATCAACTCCAAGGTTAGTTCCCACAATTTAATTCTT
80280221 C
1 C
80280222 AACAGCCTGA
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (101 bp):
CTTCAATTATTCCATGGTGGTAAATTATTTACAGAAACAACCCAATAGCTAAATCTGGCCAAATG
ATCAACTCCAAGGTTAGTTCCCACAATTTAATTCTT
Found at i:80281389 original size:12 final size:12
Alignment explanation
Indices: 80281364--80281401 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
80281354 TGAAATTTTA
*
80281364 ATTA-TATTAGG
1 ATTATTATTAAG
80281375 ATTATTATTAAG
1 ATTATTATTAAG
*
80281387 ATTATTATTTAG
1 ATTATTATTAAG
80281399 ATT
1 ATT
80281402 TAATTTTAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (12 bp):
ATTATTATTAAG
Found at i:80282360 original size:21 final size:20
Alignment explanation
Indices: 80282323--80282362 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
80282313 CACTTAAAAC
80282323 AGGGCACACACCCGTGTGGA
1 AGGGCACACACCCGTGTGGA
80282343 AGGGCA-ACACGCCTGTGTGG
1 AGGGCACACAC-CC-GTGTGG
80282363 CCCTGTTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 8 0.44
21 6 0.33
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGGA
Found at i:80297272 original size:24 final size:24
Alignment explanation
Indices: 80297235--80297311 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
80297225 AAGAGAAACC
*
80297235 CCACCTCTATTGTTTGAAGCGACA
1 CCACTTCTATTGTTTGAAGCGACA
* *
80297259 CCACTTCTTATGTTGCTTGAAGTG--A
1 CCACTTC-TA--TTGTTTGAAGCGACA
80297284 -CACTTCTATTGTTTGAAGCGACA
1 CCACTTCTATTGTTTGAAGCGACA
80297307 CCACT
1 CCACT
80297312 CATATAGGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
21 10 0.24
23 3 0.07
24 16 0.38
25 3 0.07
27 10 0.24
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (24 bp):
CCACTTCTATTGTTTGAAGCGACA
Found at i:80299228 original size:20 final size:20
Alignment explanation
Indices: 80299191--80299236 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
80299181 TAGGGACTAA
*
80299191 GATGAAAAGTTGTAAAATTT
1 GATGAAAAGTTCTAAAATTT
* *
80299211 GATGAAAATTTCTGAAATTT
1 GATGAAAAGTTCTAAAATTT
*
80299231 TATGAA
1 GATGAA
80299237 TACATGTGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.17, T:0.37
Consensus pattern (20 bp):
GATGAAAAGTTCTAAAATTT
Found at i:80309750 original size:26 final size:26
Alignment explanation
Indices: 80309720--80309781 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
80309710 ATTTAGGGAG
80309720 AACAT-AAATAATATAATACATAATGA
1 AACATCAAATAA-ATAATACATAATGA
*
80309746 AACATCAAATTAATAATACATAATGA
1 AACATCAAATAAATAATACATAATGA
80309772 AACATCAAAT
1 AACATCAAAT
80309782 TAACTCTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 29 0.85
27 5 0.15
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (26 bp):
AACATCAAATAAATAATACATAATGA
Found at i:80309782 original size:26 final size:26
Alignment explanation
Indices: 80309732--80309784 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
80309722 CATAAATAAT
80309732 ATAATACATAATGAAACATCAAATTA
1 ATAATACATAATGAAACATCAAATTA
80309758 ATAATACATAATGAAACATCAAATTA
1 ATAATACATAATGAAACATCAAATTA
80309784 A
1 A
80309785 CTCTTATTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.58, C:0.11, G:0.04, T:0.26
Consensus pattern (26 bp):
ATAATACATAATGAAACATCAAATTA
Found at i:80310131 original size:16 final size:18
Alignment explanation
Indices: 80310096--80310133 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
80310086 ATCCTTATTT
*
80310096 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
80310114 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
80310130 AAAT
1 AAAT
80310134 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:80312737 original size:40 final size:40
Alignment explanation
Indices: 80312677--80312887 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
80312667 ATTTGAATGA
*
80312677 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* *
80312717 TATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
80312757 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
80312797 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
80312837 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
80312877 TATCC-GGCTAA
1 TATCCGGGCTAA
80312888 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 7 0.05
40 144 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:80314866 original size:24 final size:24
Alignment explanation
Indices: 80314839--80314890 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
80314829 TTAGTAAGTC
*
80314839 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
80314863 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
80314887 AAAT
1 AAAT
80314891 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:80316836 original size:24 final size:24
Alignment explanation
Indices: 80316809--80316860 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
80316799 TTAGTAAGTC
*
80316809 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
80316833 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
80316857 AAAT
1 AAAT
80316861 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:80319104 original size:27 final size:27
Alignment explanation
Indices: 80319074--80319250 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
80319064 AAATTGTACA
* *
80319074 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
* ** *
80319101 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
80319128 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* *
80319155 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
80319183 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
80319210 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
80319237 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80319251 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:80319187 original size:82 final size:81
Alignment explanation
Indices: 80319074--80319229 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
80319064 AAATTGTACA
* * * *
80319074 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
80319138 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
80319155 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
80319220 TGCGAGTTGA
65 TGCGAATTGA
80319230 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80319241 original size:82 final size:81
Alignment explanation
Indices: 80319070--80319250 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
80319060 GATTAAATTG
* * * * *
80319070 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
80319135 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
80319151 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
80319215 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80319233 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80319251 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80327077 original size:27 final size:27
Alignment explanation
Indices: 80327047--80327222 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 27
80327037 AAATTGTACA
*
80327047 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
* ** * *
80327074 GCACTCAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
80327101 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
* *
80327128 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
*
80327156 GCACTAAGTGTGCGATTTGATTACTG--
1 GCACTAAGTGTGCGATTTGACTA-TGTT
* * * *
80327182 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
80327209 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80327223 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
25 1 0.01
26 22 0.18
27 76 0.62
28 24 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:80327190 original size:81 final size:80
Alignment explanation
Indices: 80327047--80327201 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 80
80327037 AAATTGTACA
* * *
80327047 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATATGA-GCACTAAGTGT
80327112 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
* ** *
80327128 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACTG-GCACTAAGTG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATA-TGAGCACTAAGTG
*
80327192 TGCGAGTTGA
64 TGCGAATTGA
80327202 TTATATAGCA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 33 0.52
82 29 0.45
83 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (80 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:80327213 original size:81 final size:80
Alignment explanation
Indices: 80327043--80327222 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 80
80327033 GATTAAATTG
* * * *
80327043 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATATGA-GCACTAA
80327108 GTGTGCGAATTGACCA
65 GTGTGCGAATTGACCA
* * ** *
80327124 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACTG-GCACTA
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATA-TGAGCACTA
* **
80327188 AGTGTGCGAGTTGATTA
64 AGTGTGCGAATTGACCA
* *
80327205 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80327223 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
81 50 0.62
82 29 0.36
83 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAGCACTAAG
TGTGCGAATTGACCA
Found at i:80328658 original size:28 final size:29
Alignment explanation
Indices: 80328618--80328700 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 29
80328608 ACTATATTGT
* * *
80328618 TACTGCATTGGGCTTAGGCCCA-TACTGC
1 TACTGTATAGGGCTTAGGCCCACTACTGA
80328646 TACTGTATAGGGCTTAGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTTAGGCCC--AC--TACTGA
80328679 TACTGTATAGGGCTTAGGCCCA
1 TACTGTATAGGGCTTAGGCCCA
80328701 AACCGTACAG
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
28 19 0.40
30 1 0.02
31 1 0.02
33 26 0.55
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28
Consensus pattern (29 bp):
TACTGTATAGGGCTTAGGCCCACTACTGA
Found at i:80328683 original size:33 final size:33
Alignment explanation
Indices: 80328640--80328751 Score: 152
Period size: 33 Copynumber: 3.4 Consensus size: 33
80328630 CTTAGGCCCA
*
80328640 TACTGCTACTGTATAGGGCTTAGGCCCAGACTG
1 TACTGATACTGTATAGGGCTTAGGCCCAGACTG
* *
80328673 TACTGATACTGTATAGGGCTTAGGCCCAAACCG
1 TACTGATACTGTATAGGGCTTAGGCCCAGACTG
* * * * *
80328706 TACAGATACTGAATAGGGCTTTGGCCTAGACTA
1 TACTGATACTGTATAGGGCTTAGGCCCAGACTG
80328739 TACTGATACTGTA
1 TACTGATACTGTA
80328752 AAAATGTAGT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (33 bp):
TACTGATACTGTATAGGGCTTAGGCCCAGACTG
Found at i:80329205 original size:30 final size:30
Alignment explanation
Indices: 80329148--80329205 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
80329138 TTTTCGAGCA
* * **
80329148 TAGGGGCAAAATTGTTAATTTGTCAAAGTC
1 TAGGGGCAAAATGGTCAATTTACCAAAGTC
*
80329178 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCAATTTACCAAAG
80329206 ATGTGAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCAATTTACCAAAGTC
Found at i:80329616 original size:47 final size:45
Alignment explanation
Indices: 80329544--80329906 Score: 268
Period size: 47 Copynumber: 7.8 Consensus size: 45
80329534 CGATTTGTGC
* *
80329544 GCCAGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGA
* * *
80329590 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCCAGACA--AGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG---CCACATATGAGA
* * * * *
80329638 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGA
* * * *
80329684 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATATGAGA
* * *
80329732 GCCAGTGTAAGACACGTCTGGGACATGCATCGGCCTTGACA-AAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC---ACATATGAGA
* * * * * * *
80329779 GCCAGTGTAAGACGTGTCTAGGACATGCTTCGGCTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATG-AGA
* * * *
80329823 GCTAGTATAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--ATATGAGA
80329871 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
80329907 AATATATCCC
Statistics
Matches: 246, Mismatches: 48, Indels: 42
0.73 0.14 0.12
Matches are distributed among these distances:
43 6 0.02
44 31 0.13
45 1 0.00
46 36 0.15
47 87 0.35
48 55 0.22
49 18 0.07
50 8 0.03
51 4 0.02
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGA
Found at i:80329708 original size:94 final size:92
Alignment explanation
Indices: 80329547--80329905 Score: 384
Period size: 94 Copynumber: 3.8 Consensus size: 92
80329537 TTTGTGCGCC
* * * * *
80329547 AGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* *
80329612 GACATGGCATCGGTATCCAGACAAGGGCT
66 GACATGGCATCGGTA--CAGAGAAGTGCT
* *
80329641 AGTGTAAGACATGTCTGGGACATGCGTCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
80329706 GACATGGCATTGGCACAGAGATGAGTGCC
66 GACATGGCATCGGTACAGAGA--AGTGCT
* * * * * * * *
80329735 AGTGTAAGACACGTCTGGGACATGCATCGGCCTTGACAAAGATAGCCAGTGTAAGA-CGTGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-ACTATGAGAGCCAGTGTAAGACCATGTCTG
* **
80329799 GGACAT-GCTTCGGCTA-AGAGTTGTGCT
65 GGACATGGCATCGG-TACAGAGAAGTGCT
* *
80329826 AGTATAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
80329890 TGGGACATGGCATCGG
63 TGGGACATGGCATCGG
80329906 CAATATATCC
Statistics
Matches: 221, Mismatches: 35, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
91 31 0.14
92 21 0.10
93 23 0.10
94 127 0.57
95 19 0.09
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGTACAGAGAAGTGCT
Found at i:80329797 original size:141 final size:135
Alignment explanation
Indices: 80329544--80329906 Score: 367
Period size: 141 Copynumber: 2.6 Consensus size: 135
80329534 CGATTTGTGC
* *
80329544 GCCAGTGTAAGACATGTCTAGGACATGC-TTCGGCCACA-TTATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATT-GG-CACAGATATGAGAGCCAGTGTAAGACCATG
* * *
80329607 TCTGGGACATGGCATCGGTATCCAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGCGTCAGC
64 TCTGGGACATGGCATCGG---CCAGACAAGAGCCAGTGTAAGACATGTCTAGGACATGCGTCAGC
* *
80329672 -CATACTATGAT
126 TAAGACT-TG-T
* * *
80329683 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACAGAGATGAGTGCCAGTGTAAGA-CAC
1 -GCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCACAGATATGAGAGCCAGTGTAAGACCAT
* * * *
80329747 GTCTGGGACAT-GCATCGGCCTTGACAAAGATAGCCAGTGTAAGACGTGTCTAGGACATGCTTCG
63 GTCTGGGACATGGCATCGGCC-AGAC-AAG--AGCCAGTGTAAGACATGTCTAGGACATGCGTCA
*
80329811 GCTAAGAGTTGT
124 GCTAAGACTTGT
* * ** *
80329823 GCTAGTATAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCAC-AG-ATATGAGAGCCAGTGTAAGACCATG
80329888 TCTGGGACATGGCATCGGC
64 TCTGGGACATGGCATCGGC
80329907 AATATATCCC
Statistics
Matches: 187, Mismatches: 23, Indels: 25
0.80 0.10 0.11
Matches are distributed among these distances:
137 10 0.05
138 18 0.10
139 31 0.17
140 33 0.18
141 69 0.37
142 24 0.13
143 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (135 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTGGCACAGATATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCCAGACAAGAGCCAGTGTAAGACATGTCTAGGACATGCGTCAGCTAAGA
CTTGT
Found at i:80330378 original size:57 final size:57
Alignment explanation
Indices: 80330306--80330419 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
80330296 TGAAAAGTGG
*
80330306 CATGTATAGGTCTAGACTAGGATGTTATTTTAAGAGAATGATTCATTTATTTTGGCT
1 CATGTATAGGGCTAGACTAGGATGTTATTTTAAGAGAATGATTCATTTATTTTGGCT
80330363 CATGTATAGGGCTAGACTAGGATGTTATTTTAAGAGAATGATTCATTTATTTTGGCT
1 CATGTATAGGGCTAGACTAGGATGTTATTTTAAGAGAATGATTCATTTATTTTGGCT
80330420 TAAGTCATAG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (57 bp):
CATGTATAGGGCTAGACTAGGATGTTATTTTAAGAGAATGATTCATTTATTTTGGCT
Found at i:80333184 original size:18 final size:18
Alignment explanation
Indices: 80333161--80333197 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
80333151 GCACATACAT
80333161 ACTCATTAAATTGAACCA
1 ACTCATTAAATTGAACCA
80333179 ACTCATTAAATTGAACCA
1 ACTCATTAAATTGAACCA
80333197 A
1 A
80333198 TCTCTTGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (18 bp):
ACTCATTAAATTGAACCA
Found at i:80350967 original size:40 final size:40
Alignment explanation
Indices: 80350911--80351074 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
80350901 ACTAAGATCT
*
80350911 GAAGGCA-GTTGTGCGAGTTACTATATCCGGGCTATGTCCC
1 GAAGGCATG-TGTGCGAGTTACTATATCCGGGCTAAGTCCC
* *
80350951 AAAGGCATGTGTGCGAGTTACTATACCCGGGCTAAGTCCC
1 GAAGGCATGTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * *
80350991 GAAGGCATTTGTGCGAGTTGCTATAACCGGGCTAAGTCCC
1 GAAGGCATGTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * *
80351031 GAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCC
1 GAAGGCATGTGTGCGAGTTACTATATCCGGGCTAAGTCCC
80351070 GAAGG
1 GAAGG
80351075 TACTTGGGTT
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
39 15 0.13
40 98 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GAAGGCATGTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:80359046 original size:40 final size:40
Alignment explanation
Indices: 80358998--80359203 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
80358988 GGACTAAGAT
*
80358998 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
80359038 CTGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
80359078 CCGAAGGCATGTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
80359118 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
80359158 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
80359197 CCGAAGG
1 CCGAAGG
80359204 TACTTGGGTT
Statistics
Matches: 157, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 15 0.10
40 142 0.90
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:80361113 original size:22 final size:23
Alignment explanation
Indices: 80361088--80361130 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
80361078 TTTCCCCGAA
*
80361088 TGGAGTGTAG-GGTTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
80361110 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
80361131 GTAGGATCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.00, G:0.53, T:0.26
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:80365767 original size:40 final size:40
Alignment explanation
Indices: 80365720--80365796 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
80365710 TCGATATATT
*
80365720 GCACACTAAATGTTATACATAGCCGAAGCTATCTCGAATC
1 GCACACTAAATGTCATACATAGCCGAAGCTATCTCGAATC
* * **
80365760 GCACACTAAGTGTCATATATAGTTGAAGCTATCTCGA
1 GCACACTAAATGTCATACATAGCCGAAGCTATCTCGA
80365797 TCTTGCATAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (40 bp):
GCACACTAAATGTCATACATAGCCGAAGCTATCTCGAATC
Found at i:80365821 original size:41 final size:40
Alignment explanation
Indices: 80365744--80365826 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 40
80365734 ATACATAGCC
* *
80365744 GAAGCTATCTCGAATCGCACACTAAGTGTCATATATAGTT
1 GAAGCTATCTCGAATCGCACACTAAGTGCCACATATAGTT
*
80365784 GAAGCTATCTCG-ATCTTGCATACTAAGTGCCACATATAGTT
1 GAAGCTATCTCGAATC--GCACACTAAGTGCCACATATAGTT
80365825 GA
1 GA
80365827 TTTGTCGCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
39 3 0.08
40 12 0.32
41 23 0.61
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (40 bp):
GAAGCTATCTCGAATCGCACACTAAGTGCCACATATAGTT
Found at i:80368009 original size:79 final size:82
Alignment explanation
Indices: 80367898--80368082 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
80367888 GCTACTCGTT
* *
80367898 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
80367961 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
80367978 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
80368041 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
80368058 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80368083 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:80368082 original size:40 final size:40
Alignment explanation
Indices: 80367879--80368082 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
80367869 CGGAATTTAA
** *
80367879 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80367919 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80367959 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80367998 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80368038 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80368078 CCGGA
1 CCGGA
80368083 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80388157 original size:41 final size:40
Alignment explanation
Indices: 80388048--80388157 Score: 132
Period size: 40 Copynumber: 2.7 Consensus size: 40
80388038 GAATGCTCGA
*
80388048 TATCTTGCACACTAAGTGCAGTACATAGCCGAAGCTATCTC
1 TATCTCGCACACTAAGTGCA-TACATAGCCGAAGCTATCTC
** * *
80388089 -AAATCGTACACTAAGTGCCATATATAGCCGAAGCTATCTC
1 TATCTCGCACACTAAGTG-CATACATAGCCGAAGCTATCTC
*
80388129 TATCTCGCACACTAAGTGCTACACATAGC
1 TATCTCGCACACTAAGTGC-ATACATAGC
80388158 TGATTTGTCA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
40 33 0.59
41 23 0.41
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (40 bp):
TATCTCGCACACTAAGTGCATACATAGCCGAAGCTATCTC
Found at i:80398456 original size:21 final size:23
Alignment explanation
Indices: 80398416--80398463 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
80398406 GTTCTTTTAG
80398416 TTGAATTTTCAATGTATTGACTA
1 TTGAATTTTCAATGTATTGACTA
*
80398439 TTGACTTTTC-AT-TATTGACTA
1 TTGAATTTTCAATGTATTGACTA
80398460 TTGA
1 TTGA
80398464 GTGCTTCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 13 0.54
22 2 0.08
23 9 0.38
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.50
Consensus pattern (23 bp):
TTGAATTTTCAATGTATTGACTA
Found at i:80398602 original size:221 final size:221
Alignment explanation
Indices: 80398219--80398652 Score: 868
Period size: 221 Copynumber: 2.0 Consensus size: 221
80398209 CCTATGGTAA
80398219 TGACTTTTCATTATTGACTATTGAGTGCTTCATTTATTGTCCTTAAACACCTCGAGTTGTTTGAG
1 TGACTTTTCATTATTGACTATTGAGTGCTTCATTTATTGTCCTTAAACACCTCGAGTTGTTTGAG
80398284 TGAATCTGTAGTGAGGATCTGAAACTCTGTGATATTTTGAATCAATGGTAACTACTTAGATGAGG
66 TGAATCTGTAGTGAGGATCTGAAACTCTGTGATATTTTGAATCAATGGTAACTACTTAGATGAGG
80398349 GGAGACACCTATGTTTGCATGATTAAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTT
131 GGAGACACCTATGTTTGCATGATTAAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTT
80398414 AGTTGAATTTTCAATGTATTGACTAT
196 AGTTGAATTTTCAATGTATTGACTAT
80398440 TGACTTTTCATTATTGACTATTGAGTGCTTCATTTATTGTCCTTAAACACCTCGAGTTGTTTGAG
1 TGACTTTTCATTATTGACTATTGAGTGCTTCATTTATTGTCCTTAAACACCTCGAGTTGTTTGAG
80398505 TGAATCTGTAGTGAGGATCTGAAACTCTGTGATATTTTGAATCAATGGTAACTACTTAGATGAGG
66 TGAATCTGTAGTGAGGATCTGAAACTCTGTGATATTTTGAATCAATGGTAACTACTTAGATGAGG
80398570 GGAGACACCTATGTTTGCATGATTAAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTT
131 GGAGACACCTATGTTTGCATGATTAAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTT
80398635 AGTTGAATTTTCAATGTA
196 AGTTGAATTTTCAATGTA
80398653 CGATTACCTA
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
221 213 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (221 bp):
TGACTTTTCATTATTGACTATTGAGTGCTTCATTTATTGTCCTTAAACACCTCGAGTTGTTTGAG
TGAATCTGTAGTGAGGATCTGAAACTCTGTGATATTTTGAATCAATGGTAACTACTTAGATGAGG
GGAGACACCTATGTTTGCATGATTAAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTT
AGTTGAATTTTCAATGTATTGACTAT
Found at i:80400210 original size:17 final size:17
Alignment explanation
Indices: 80400188--80400223 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
80400178 AAGATTATCA
80400188 ATCAACAATTT-GAATAT
1 ATCAAC-ATTTAGAATAT
80400205 ATCAACATTTAGAATAT
1 ATCAACATTTAGAATAT
80400222 AT
1 AT
80400224 TAGCTAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (17 bp):
ATCAACATTTAGAATAT
Found at i:80401377 original size:5 final size:5
Alignment explanation
Indices: 80401369--80401394 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
80401359 TACAAAACAA
80401369 TTGTT TTGTT TTGTT TTGTT TTGTT T
1 TTGTT TTGTT TTGTT TTGTT TTGTT T
80401395 ATTTTATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTGTT
Found at i:80404551 original size:45 final size:44
Alignment explanation
Indices: 80404502--80404747 Score: 258
Period size: 45 Copynumber: 5.5 Consensus size: 44
80404492 TGCCATAGTG
* * * * *
80404502 TCTTTCAACCATGGTCTTATTTCTTTGATTCATGATACCATAACA
1 TCTTTCAACCATGGTCTTA-CTCATAGAATCATGATGCCATAACA
* * * *
80404547 TCTTTTAGCTATGGTCTTACTCGTAGAATCATGATGCCATAACA
1 TCTTTCAACCATGGTCTTACTCATAGAATCATGATGCCATAACA
* *
80404591 TCTTTCAATCATGGTCTTACTCGATAGAATCATGATGCCATAATA
1 TCTTTCAACCATGGTCTTACTC-ATAGAATCATGATGCCATAACA
** *
80404636 TCTTTCAGTCATGGTCTTACTCGATAAAATCATGATGCCATAACA
1 TCTTTCAACCATGGTCTTACTC-ATAGAATCATGATGCCATAACA
** * * **
80404681 TCTTTCAGTCATGGTCTTACTCGACAGAATCAAGATGCCATAATG
1 TCTTTCAACCATGGTCTTACTC-ATAGAATCATGATGCCATAACA
* *
80404726 TCTTTCAATCATAGTCTTACTC
1 TCTTTCAACCATGGTCTTACTC
80404748 GTTTCTAGTA
Statistics
Matches: 176, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 38 0.22
45 138 0.78
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (44 bp):
TCTTTCAACCATGGTCTTACTCATAGAATCATGATGCCATAACA
Found at i:80404748 original size:45 final size:45
Alignment explanation
Indices: 80404531--80404748 Score: 305
Period size: 45 Copynumber: 4.9 Consensus size: 45
80404521 TTTCTTTGAT
* * *
80404531 TCATGATACCATAACATCTTT-TAGCTATGGTCTTACTCG-TAGAA
1 TCATGATGCCATAACATCTTTCAATC-ATGGTCTTACTCGATAGAA
80404575 TCATGATGCCATAACATCTTTCAATCATGGTCTTACTCGATAGAA
1 TCATGATGCCATAACATCTTTCAATCATGGTCTTACTCGATAGAA
* * *
80404620 TCATGATGCCATAATATCTTTCAGTCATGGTCTTACTCGATAAAA
1 TCATGATGCCATAACATCTTTCAATCATGGTCTTACTCGATAGAA
* *
80404665 TCATGATGCCATAACATCTTTCAGTCATGGTCTTACTCGACAGAA
1 TCATGATGCCATAACATCTTTCAATCATGGTCTTACTCGATAGAA
* ** *
80404710 TCAAGATGCCATAATGTCTTTCAATCATAGTCTTACTCG
1 TCATGATGCCATAACATCTTTCAATCATGGTCTTACTCG
80404749 TTTCTAGTAT
Statistics
Matches: 158, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
44 33 0.21
45 125 0.79
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (45 bp):
TCATGATGCCATAACATCTTTCAATCATGGTCTTACTCGATAGAA
Found at i:80404785 original size:135 final size:133
Alignment explanation
Indices: 80404489--80404791 Score: 333
Period size: 135 Copynumber: 2.3 Consensus size: 133
80404479 ATTCTTGTCT
* * * ** * *
80404489 TGATGCCATAGTGTCTTTCAACCATGGTCTTATTTCTTTGATTCATGATACCATAACATCTTTTA
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTA-CTCATAAAATCATGATACCATAACATCTTTCA
* * *
80404554 GCTATGGTCTTACTCGTAGAATCATGATGCCATAACATCTTTCAATCATGGTCTTACTCGATAGA
65 GCTATGGTCTTACTCGCAGAATCAAGATGCCATAACATCTTTCAATCATAGTCTTACTCGATAGA
80404619 ATCA
130 ATCA
* * * *
80404623 TGATGCCATAATATCTTTC-AGTCATGGTCTTACTCGATAAAATCATGATGCCATAACATCTTTC
1 TGATGCCATAGTGTCTTTCAACT-ATGGTCTTACTC-ATAAAATCATGATACCATAACATCTTTC
** *
80404687 AG-TCATGGTCTTACTCGACAGAATCAAGATGCCATAATGTCTTTCAATCATAGTCTTACTCGTT
64 AGCT-ATGGTCTTACTCG-CAGAATCAAGATGCCATAACATCTTTCAATCATAGTCTTACTCG-A
** *
80404751 TCTAGT-A
126 TAGAATCA
* *
80404758 TGATGTCATAGTGTCTTTCAACTATGGTTTTACT
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTACT
80404792 TCTTTTCTGG
Statistics
Matches: 138, Mismatches: 25, Indels: 11
0.79 0.14 0.06
Matches are distributed among these distances:
133 4 0.03
134 63 0.46
135 66 0.48
136 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (133 bp):
TGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATAAAATCATGATACCATAACATCTTTCAG
CTATGGTCTTACTCGCAGAATCAAGATGCCATAACATCTTTCAATCATAGTCTTACTCGATAGAA
TCA
Found at i:80404791 original size:45 final size:46
Alignment explanation
Indices: 80404714--80404835 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 46
80404704 ACAGAATCAA
* *
80404714 GATGCCATAATGTCTTTCAA-TCATAGTCTTAC-TCGTTTCTAGTAT
1 GATGCCATAGTGTCTTTCAACT-ATGGTCTTACTTCGTTTCTAGTAT
* * * *
80404759 GATGTCATAGTGTCTTTCAACTATGGTTTTACTTCTTTTCTGGTAT
1 GATGCCATAGTGTCTTTCAACTATGGTCTTACTTCGTTTCTAGTAT
* *
80404805 -AGTGCCACAGTGTCTTTCCACTATGGTCTTA
1 GA-TGCCATAGTGTCTTTCAACTATGGTCTTA
80404836 ATCATTTTCC
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 27 0.42
46 37 0.58
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (46 bp):
GATGCCATAGTGTCTTTCAACTATGGTCTTACTTCGTTTCTAGTAT
Found at i:80411183 original size:55 final size:53
Alignment explanation
Indices: 80411122--80411378 Score: 195
Period size: 55 Copynumber: 4.8 Consensus size: 53
80411112 ATTAGGGTTT
* *
80411122 AAGGATACCATGTAAGACTATGCCAAGGCACGGCAATTGGTAAGGCTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAAGG-TTCTAAGGC
* * * * * * * * *
80411177 AAGGATATCATATAAGACCATGTCAAGACATGACATTGATAAGTTATTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAG--GTTCTAAGG-C
* *
80411233 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA-GTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGGTTC-TAAGGC
* * * * * *
80411285 AAGGATACCATGTAAGACCATGTCGAGACATGACAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGGTTCTAAGGC
* * * *
80411334 AAGGATACCACGTAAGACCATGACAAGTG-ATGGAAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAG-GCATGGCATTGGTAAGGT
80411379 ACCCGTGTAT
Statistics
Matches: 158, Mismatches: 37, Indels: 20
0.73 0.17 0.09
Matches are distributed among these distances:
49 37 0.23
52 8 0.05
53 35 0.22
54 11 0.07
55 63 0.40
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGGTTCTAAGGC
Found at i:80411328 original size:108 final size:110
Alignment explanation
Indices: 80411129--80411329 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
80411119 TTTAAGGATA
* *
80411129 CCATGTAAGACTATGCCAAGGCACGGCAATTGGTAAGGCTTCTAAGGCAAGGATATCATATAAGA
1 CCATGTAAGACCATGCCAAGGCACGGCAATTGGTAAGGCTTCTAAGGCAAGGATACCATATAAGA
*
80411194 CCATGTCAAGACATGACATTGATAAGTTATTATAAGGAAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTATTATAAGGAAAAGGTC
* * *
80411239 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCACGGCAATTGGTAAGGCTTC-TAAGGCAAGGATACCATATAAG
* *
80411301 ACCATGTCGAGACATGACAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGATAAGTT
80411330 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCACGGCAATTGGTAAGGCTTCTAAGGCAAGGATACCATATAAGA
CCATGTCAAGACATGACAATGATAAGTTATTATAAGGAAAAGGTC
Found at i:80411590 original size:16 final size:16
Alignment explanation
Indices: 80411569--80411599 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80411559 AGAAATTTGA
80411569 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
80411585 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
80411600 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:80417634 original size:30 final size:30
Alignment explanation
Indices: 80417600--80417660 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
80417590 TTCCCAAGCC
80417600 TAGGGGCAAAA-GTGTAAATATGCAAAAGTT
1 TAGGGG-AAAATGTGTAAATATGCAAAAGTT
* * *
80417630 TAGGGGAAAATTTGTAATTTTGCAAAAGTT
1 TAGGGGAAAATGTGTAAATATGCAAAAGTT
80417660 T
1 T
80417661 GAATTAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAATGTGTAAATATGCAAAAGTT
Found at i:80419674 original size:14 final size:14
Alignment explanation
Indices: 80419655--80419682 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80419645 GTATCATGAC
80419655 ATGTATATATATAT
1 ATGTATATATATAT
80419669 ATGTATATATATAT
1 ATGTATATATATAT
80419683 GACTAGGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
ATGTATATATATAT
Found at i:80426979 original size:28 final size:28
Alignment explanation
Indices: 80426916--80427069 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
80426906 ATATTAAGTC
* *
80426916 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80426943 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80426971 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80426999 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80427027 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
80427055 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80427070 GTACAATTTA
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 22 0.18
28 99 0.82
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:80435213 original size:28 final size:28
Alignment explanation
Indices: 80435150--80435302 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
80435140 ATATTAAGTC
* *
80435150 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80435177 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80435205 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
80435233 CGCACACTTAGTGCTACATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80435260 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
80435288 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80435303 GTACAATTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
27 48 0.40
28 71 0.60
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:80435220 original size:55 final size:55
Alignment explanation
Indices: 80435150--80435327 Score: 250
Period size: 55 Copynumber: 3.2 Consensus size: 55
80435140 ATATTAAGTC
* *
80435150 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
* *
80435205 CGCACACTTAGTGCTACATAATCAAATTCGCACACTTAGTGCTACATAATC-AACT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTATATAATCAAACT
* * * *
80435260 CGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAA-CTCGCACACTTAGTGCTATATAA-TCAAACT
80435317 CGCACACTTAG
1 CGCACACTTAG
80435328 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
54 2 0.02
55 67 0.61
56 26 0.24
57 14 0.13
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:80435290 original size:83 final size:83
Alignment explanation
Indices: 80435150--80435302 Score: 270
Period size: 83 Copynumber: 1.8 Consensus size: 83
80435140 ATATTAAGTC
* *
80435150 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
80435215 GTGCTACATAATCAAATT
66 GTGCTACATAATCAAATT
* *
80435233 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAGCTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
80435298 GTGCT
66 GTGCT
80435303 GTACAATTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (83 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAATCAAATT
Found at i:80437201 original size:1 final size:1
Alignment explanation
Indices: 80437195--80437220 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
80437185 ATTGAAGACG
80437195 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
80437221 TATGAGGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:80449750 original size:27 final size:27
Alignment explanation
Indices: 80449720--80449898 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
80449710 ATATTGAGCC
* * *
80449720 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
80449747 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
80449774 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
80449802 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
80449829 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
80449856 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAGTCA-ACT
80449883 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
80449899 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:80449859 original size:82 final size:81
Alignment explanation
Indices: 80449741--80449896 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80449731 TGCTATATAA
* *
80449741 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
80449806 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
80449823 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
80449887 CACTTAGTGC
65 CACTTAGTGC
80449897 TATACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:80450464 original size:13 final size:13
Alignment explanation
Indices: 80450446--80450470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80450436 TACTAAATTT
80450446 TCATGGATTCAAG
1 TCATGGATTCAAG
80450459 TCATGGATTCAA
1 TCATGGATTCAA
80450471 TATACCATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:80452413 original size:13 final size:13
Alignment explanation
Indices: 80452395--80452419 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80452385 GGGATTTAAT
80452395 GAATAAAAGAAAA
1 GAATAAAAGAAAA
80452408 GAATAAAAGAAA
1 GAATAAAAGAAA
80452420 GCAAATGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (13 bp):
GAATAAAAGAAAA
Found at i:80453782 original size:40 final size:40
Alignment explanation
Indices: 80453727--80454283 Score: 898
Period size: 40 Copynumber: 13.8 Consensus size: 40
80453717 TCATGAGCAA
80453727 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
80453767 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
80453807 TTGATATATCCGAGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
80453847 TTGATATATCCGGGCTAAGACCCGAATGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
80453887 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCTTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCA-------TTTGTGCGAG
80453934 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
80453974 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
80454014 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
80454054 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
80454094 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
80454134 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* * * *
80454174 TTGATATATCCGGGCTAAGACTCGAAGGCAATTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
80454214 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* * * *
80454254 TTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TTGATATATCCGGGCTAAAACCCGAAGGCA
80454284 ATTGAGCTTG
Statistics
Matches: 489, Mismatches: 21, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
40 449 0.92
47 40 0.08
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
Found at i:80464633 original size:42 final size:42
Alignment explanation
Indices: 80464566--80464656 Score: 164
Period size: 42 Copynumber: 2.2 Consensus size: 42
80464556 CAAATTGATC
*
80464566 CACACGGGCGTGTGACACGGTCGTGTGGCCCAACACGGGTCT
1 CACACGGGCGTGTGACACGGCCGTGTGGCCCAACACGGGTCT
*
80464608 CACACGGGCGTGTGACTCGGCCGTGTGGCCCAACACGGGTCT
1 CACACGGGCGTGTGACACGGCCGTGTGGCCCAACACGGGTCT
80464650 CACACGG
1 CACACGG
80464657 CCATACCCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.16, C:0.33, G:0.35, T:0.15
Consensus pattern (42 bp):
CACACGGGCGTGTGACACGGCCGTGTGGCCCAACACGGGTCT
Found at i:80464848 original size:19 final size:19
Alignment explanation
Indices: 80464824--80464860 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
80464814 TTTCTTTTTC
80464824 TTTCTTT-CTCTCTTCTTTA
1 TTTCTTTCCTC-CTTCTTTA
80464843 TTTCTTTCCTCCTTCTTT
1 TTTCTTTCCTCCTTCTTT
80464861 CCCTTTCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTCTTTCCTCCTTCTTTA
Found at i:80466553 original size:21 final size:21
Alignment explanation
Indices: 80466513--80466553 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80466503 ACTATGCTCA
* * *
80466513 GAGGTTTGATAGTTTTGATGC
1 GAGGTTTGACAGTATCGATGC
80466534 GAGGTTTGACAGTATCGATG
1 GAGGTTTGACAGTATCGATG
80466554 AGACTTTGCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.07, G:0.34, T:0.37
Consensus pattern (21 bp):
GAGGTTTGACAGTATCGATGC
Found at i:80466660 original size:11 final size:11
Alignment explanation
Indices: 80466644--80466687 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
80466634 TTAGTCCATC
80466644 TATTTTATTTT
1 TATTTTATTTT
80466655 TATTTTTATTTT
1 TA-TTTTATTTT
* *
80466667 CATTTTATCTT
1 TATTTTATTTT
*
80466678 TCTTTTATTT
1 TATTTTATTT
80466688 ATTTTTGAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:80466666 original size:17 final size:17
Alignment explanation
Indices: 80466644--80466687 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
80466634 TTAGTCCATC
*
80466644 TATTTTATTTTTATTTT
1 TATTTTATTTTTATCTT
80466661 TATTTTCA-TTTTATCTT
1 TATTTT-ATTTTTATCTT
*
80466678 TCTTTTATTT
1 TATTTTATTT
80466688 ATTTTTGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (17 bp):
TATTTTATTTTTATCTT
Found at i:80466679 original size:12 final size:11
Alignment explanation
Indices: 80466645--80466687 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
80466635 TAGTCCATCT
*
80466645 ATTTTATTTTT
1 ATTTTATTTTC
80466656 ATTTTTATTTTC
1 A-TTTTATTTTC
80466668 ATTTTATCTTTC
1 ATTTTAT-TTTC
80466680 -TTTTATTT
1 ATTTTATTT
80466688 ATTTTTGAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 2 0.07
11 13 0.45
12 14 0.48
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (11 bp):
ATTTTATTTTC
Found at i:80471961 original size:50 final size:51
Alignment explanation
Indices: 80471886--80472111 Score: 234
Period size: 50 Copynumber: 4.5 Consensus size: 51
80471876 TGAGTACACG
*
80471886 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-GTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTCGTTAAGTCGCA
* * * *
80471936 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACATCGATCA--CGC-
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GAC-TCGTTAAGTCGCA
* * * * * *
80471988 -GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTCGTTAAGTCGCA
* *
80472037 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTCGTTAAGTCGCA
*
80472086 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
80472112 TGCGTATCAG
Statistics
Matches: 147, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
46 2 0.01
48 4 0.03
49 31 0.21
50 70 0.48
51 30 0.20
52 1 0.01
53 5 0.03
54 1 0.01
55 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTCGTTAAGTCGCA
Found at i:80472017 original size:26 final size:26
Alignment explanation
Indices: 80471987--80472068 Score: 70
Period size: 26 Copynumber: 3.2 Consensus size: 26
80471977 ATCGATCACG
80471987 CGTGTAGTACTAAGTGCAGGCTACTA
1 CGTGTAGTACTAAGTGCAGGCTACTA
80472013 CGTGTA-T-C-AGATGGTG-AGG-T-C-A
1 CGTGTAGTACTA-A--GTGCAGGCTACTA
80472035 CGTGTGTAGTACTAAGTGCAGGCTACTA
1 C--GTGTAGTACTAAGTGCAGGCTACTA
80472063 CGTGTA
1 CGTGTA
80472069 CCAGATTGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 24
0.65 0.00 0.35
Matches are distributed among these distances:
22 2 0.05
23 2 0.05
24 11 0.25
25 8 0.18
26 17 0.39
27 2 0.05
28 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CGTGTAGTACTAAGTGCAGGCTACTA
Found at i:80488560 original size:40 final size:41
Alignment explanation
Indices: 80488510--80488605 Score: 135
Period size: 40 Copynumber: 2.4 Consensus size: 41
80488500 TATCTTGGTA
80488510 TCGCACACTTAGTGCC-TCATATAGCCGAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCAT-ATATAGCCGAAGCTATTTCCAAC
* *
80488550 TCGCACACTTAGTGCCATTTATAGCCGAAGCTATTTCGAAC
1 TCGCACACTTAGTGCCATATATAGCCGAAGCTATTTCCAAC
*
80488591 -GGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
80488606 GAACTTAGTC
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 44 0.86
41 7 0.14
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATATATAGCCGAAGCTATTTCCAAC
Found at i:80506740 original size:22 final size:23
Alignment explanation
Indices: 80506686--80506737 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
80506676 TATAAAACCT
80506686 AATAAAAA-TAAG-CTTAAAGAAG
1 AATAAAAAGT-AGTCTTAAAGAAG
80506708 AATAAAAAGTAGTCTTAAA-ATAG
1 AATAAAAAGTAGTCTTAAAGA-AG
80506731 AATAAAA
1 AATAAAA
80506738 GTAAAAAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAG
Found at i:80512096 original size:25 final size:24
Alignment explanation
Indices: 80512051--80512148 Score: 92
Period size: 25 Copynumber: 4.0 Consensus size: 24
80512041 TGCTTTATCA
**
80512051 TATAACTGGAGGCCTAG-CCTTTTT
1 TATAACTGG-GGCAAAGCCCTTTTT
80512075 TAATAACTGGGGCAAAGCCCTTTTT
1 T-ATAACTGGGGCAAAGCCCTTTTT
* *
80512100 GATAAACTGGGGCAAAGCCCTTTTCGG
1 TAT-AACTGGGGCAAAGCCCTTTT--T
*
80512127 TA-AACTGGGGCATAGCCCTTTT
1 TATAACTGGGGCAAAGCCCTTTT
80512149 AGCACTTCCT
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
24 8 0.13
25 54 0.86
27 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (24 bp):
TATAACTGGGGCAAAGCCCTTTTT
Found at i:80512098 original size:24 final size:25
Alignment explanation
Indices: 80512066--80512148 Score: 114
Period size: 25 Copynumber: 3.4 Consensus size: 25
80512056 CTGGAGGCCT
* *
80512066 AGCCTTTTTTAAT-AACTGGGGCAA
1 AGCCCTTTTTGATAAACTGGGGCAA
80512090 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCCTTTTTGATAAACTGGGGCAA
* * *
80512115 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTTTGATAAACTGGGGCAA
80512140 AGCCCTTTT
1 AGCCCTTTT
80512149 AGCACTTCCT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 11 0.21
25 42 0.79
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (25 bp):
AGCCCTTTTTGATAAACTGGGGCAA
Found at i:80513019 original size:27 final size:27
Alignment explanation
Indices: 80512957--80513020 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
80512947 GGGCATATTC
80512957 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* * *
80512984 GTCACTTTACCCTACGGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
80513011 GTCTTTTTAC
1 GTCATTTTAC
80513021 TTTTTAGGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:80513188 original size:27 final size:27
Alignment explanation
Indices: 80513052--80513207 Score: 109
Period size: 27 Copynumber: 5.7 Consensus size: 27
80513042 TTTCATCCTA
* * * *
80513052 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
80513079 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
80513106 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
**
80513135 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
80513162 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
80513189 TGAGTGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
80513208 CTACCCTATA
Statistics
Matches: 103, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.01
27 72 0.70
28 15 0.15
29 15 0.15
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:80513224 original size:27 final size:26
Alignment explanation
Indices: 80513158--80513234 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 26
80513148 GTAATTTTGT
*
80513158 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAAT-AGGGGTATTTTGGTAATTCTAC
* *
80513185 AAATTGAGTGTATTTTGGTAATTCTACC
1 AAATAG-GGGTATTTTGGTAATTCTA-C
** *
80513213 CTATAGGGGTATTTTAGTAATT
1 AAATAGGGGTATTTTGGTAATT
80513235 TCACAATCGA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 1 0.03
27 35 0.88
28 4 0.10
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.43
Consensus pattern (26 bp):
AAATAGGGGTATTTTGGTAATTCTAC
Found at i:80513258 original size:26 final size:27
Alignment explanation
Indices: 80513239--80513355 Score: 83
Period size: 27 Copynumber: 4.3 Consensus size: 27
80513229 GTAATTTCAC
*
80513239 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGCA
** * *
80513266 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGCA
* * **
80513293 AATCAAGGGTAAAACT-GTAATTCTATA
1 AATCGAGGGTAAAA-TGGTAATTTTGCA
* *** *
80513320 AATCGAAGGTACTTTGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTGCA
*
80513347 AGTCGAGGG
1 AATCGAGGG
80513356 CATTTCTATA
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 72 0.99
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGCA
Found at i:80513269 original size:27 final size:26
Alignment explanation
Indices: 80513239--80513330 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 26
80513229 GTAATTTCAC
*
80513239 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAAT-GTAATTCTGTA
*
80513266 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAA-TGTAATTCTGTA
* *
80513293 AATCAAGGGTAAAACTGTAATTCTATA
1 AATCGAGGGTAAAA-TGTAATTCTGTA
*
80513320 AATCGAAGGTA
1 AATCGAGGGTA
80513331 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (26 bp):
AATCGAGGGTAAAATGTAATTCTGTA
Found at i:80517380 original size:40 final size:39
Alignment explanation
Indices: 80517336--80517560 Score: 263
Period size: 40 Copynumber: 5.7 Consensus size: 39
80517326 GCCACTAGCT
*
80517336 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
80517376 CAAATGCCTTCAGGACTTAGCTCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
80517415 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
80517455 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
80517495 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
*
80517535 CAAATG-CTCTCGGGACTTAGCTCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
80517561 TATCATCCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 38 0.23
40 124 0.77
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:80517437 original size:79 final size:80
Alignment explanation
Indices: 80517336--80517520 Score: 273
Period size: 79 Copynumber: 2.3 Consensus size: 80
80517326 GCCACTAGCT
* * * * *
80517336 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCAGGACTTAGCTCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCAGGACTTAGCCCGG
80517401 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* *
80517415 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCAGGACTTAGCCCGG
* *
80517480 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
80517495 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80517521 ATTAGCCACT
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 58 0.61
80 37 0.39
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCAGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:80519337 original size:25 final size:25
Alignment explanation
Indices: 80519276--80519339 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
80519266 GGCTGTCACA
*
80519276 GGCAAAGCCCTTTTTGATAAACTGG
1 GGCAAAGCCCTTTTCGATAAACTGG
** *
80519301 GGCAAAAACCTTTTCGGTAAACTGG
1 GGCAAAGCCCTTTTCGATAAACTGG
*
80519326 GGCATAGCCCTTTT
1 GGCAAAGCCCTTTT
80519340 AGCACTTCCT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (25 bp):
GGCAAAGCCCTTTTCGATAAACTGG
Found at i:80520210 original size:27 final size:27
Alignment explanation
Indices: 80520149--80520225 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
80520139 GGCATATTCG
80520149 TCATTTTACCATACAGGGGTATTACGA
1 TCATTTTACCATACAGGGGTATTACGA
* * *
80520176 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAGGGG-TATTACGA
* *
80520203 TCTTTTTACC-TATTAGGGGTATT
1 TCATTTTACCATA-CAGGGGTATT
80520226 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:80520296 original size:27 final size:27
Alignment explanation
Indices: 80520266--80520351 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
80520256 GTAAATCTAC
*
80520266 AAACCAAAGGTATTTTAGTAATTTTGT
1 AAACCAATGGTATTTTAGTAATTTTGT
80520293 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAATGGTATTT-TAGTAATTTTGT
* *
80520319 AGAAAGTCAATGGTATTTTTGTAATTTTGT
1 --AAA-CCAATGGTATTTTAGTAATTTTGT
80520349 AAA
1 AAA
80520352 TCAGGGGCAT
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
26 1 0.02
27 21 0.42
28 9 0.18
29 18 0.36
30 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (27 bp):
AAACCAATGGTATTTTAGTAATTTTGT
Found at i:80520379 original size:27 final size:27
Alignment explanation
Indices: 80520330--80520452 Score: 124
Period size: 27 Copynumber: 4.6 Consensus size: 27
80520320 GAAAGTCAAT
* **
80520330 GGTATTTTTGTAATTTTGTAAATCAGG
1 GGTATTTTGGTAATTTTACAAATCAGG
* *
80520357 GGCATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTTGGTAATTTTACAAATCAG-G
* * * *
80520384 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAATCAGG
*
80520411 GATATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTTTACAAATC-AGG
80520438 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
80520453 CTACCCTATA
Statistics
Matches: 77, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.03
27 74 0.96
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATCAGG
Found at i:80520447 original size:81 final size:81
Alignment explanation
Indices: 80520332--80520485 Score: 195
Period size: 81 Copynumber: 1.9 Consensus size: 81
80520322 AAGTCAATGG
* ** * * *
80520332 TATTTTTGTAATTTTGTAAATCAGGGGCATTTTGGTAATTTTA-CAAATTGAGGGTATTTCGGTA
1 TATTTTGGTAATTTTACAAATCAGGGGCATTTTGGTAATTCTACCAAATAG-GGGTATTTCAGTA
80520396 ATTTCACAAACCAGTGA
65 ATTTCACAAACCAGTGA
* **
80520413 TATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCAGTA
1 TATTTTGGTAATTTTACAAATC-AGGGGCATTTTGGTAATTCTACCAAATAGGGGTATTTCAGTA
80520477 ATTTCACAA
65 ATTTCACAA
80520486 TCGAGAATAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.02
81 57 0.92
82 4 0.06
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (81 bp):
TATTTTGGTAATTTTACAAATCAGGGGCATTTTGGTAATTCTACCAAATAGGGGTATTTCAGTAA
TTTCACAAACCAGTGA
Found at i:80520539 original size:27 final size:27
Alignment explanation
Indices: 80520484--80520575 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
80520474 GTAATTTCAC
** * * *
80520484 AATCGAGAATAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
80520511 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
**
80520538 AATTAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
80520565 AATCGAGGGTA
1 AATCGAGGGTA
80520576 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.45, C:0.09, G:0.20, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:80522299 original size:19 final size:19
Alignment explanation
Indices: 80522277--80522324 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
80522267 ATCTGTGAGA
*
80522277 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
* *
80522296 AGAAAAGAAAATTAAAAATT
1 AGAAAA-TAAATGAAAAATT
80522316 A-AAAATAAA
1 AGAAAATAAA
80522325 AATAAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 3 0.12
19 10 0.42
20 11 0.46
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:80522315 original size:7 final size:7
Alignment explanation
Indices: 80522303--80522334 Score: 50
Period size: 6 Copynumber: 4.9 Consensus size: 7
80522293 ATTAGAAAAG
80522303 AAAATTA
1 AAAATTA
80522310 AAAATTA
1 AAAATTA
80522317 AAAA-TA
1 AAAATTA
80522323 AAAA-TA
1 AAAATTA
80522329 AAAATT
1 AAAATT
80522335 TGAATTGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAATTA
Found at i:80522325 original size:19 final size:20
Alignment explanation
Indices: 80522277--80522334 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 20
80522267 ATCTGTGAGA
* *
80522277 AGAAAAT-AAATGAAGAATT
1 AGAAAATAAAATTAAAAATT
*
80522296 AGAAAAGAAAATTAAAAATT
1 AGAAAATAAAATTAAAAATT
*
80522316 A-AAAATAAAAATAAAAATT
1 AGAAAATAAAATTAAAAATT
80522335 TGAATTGCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 22 0.67
20 11 0.33
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (20 bp):
AGAAAATAAAATTAAAAATT
Found at i:80524346 original size:43 final size:42
Alignment explanation
Indices: 80524299--80524393 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 42
80524289 TCCCAGACGT
* * **
80524299 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAAAG
1 GGTCTTACACGAAATCAAATAT-GATGCCACCATCCCAGAAAG
*
80524342 GGTCTTACACGAAATCAAATATGATGCCACCATCCCAG-ATG
1 GGTCTTACACGAAATCAAATATGATGCCACCATCCCAGAAAG
80524383 TGGTCTTACAC
1 -GGTCTTACAC
80524394 ATAAACCATA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.04
42 24 0.52
43 20 0.43
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATGATGCCACCATCCCAGAAAG
Found at i:80524388 original size:42 final size:43
Alignment explanation
Indices: 80524280--80524436 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
80524270 AGCTCGTACA
* * * *
80524280 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCACCGTCCCAGAAGTGGTCTTACACGAAATCAAATATCG
*
80524323 ATGCCACTGTCCCAGAAAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCACCGTCCCAG-AAGTGGTCTTACACGAAATCAAATATCG
* * * * *
80524365 ATGCCACCATCCCAGATGTGGTCTTACACATAAACCATAA-GTCG
1 ATGCCACCGTCCCAGAAGTGGTCTTACAC-GAAATCA-AATATCG
* *
80524409 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCACCGTCCCAGAAGTGGTCTTACA
80524437 TGATAACAAG
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 24 0.25
43 39 0.41
44 30 0.32
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCACCGTCCCAGAAGTGGTCTTACACGAAATCAAATATCG
Found at i:80528490 original size:37 final size:37
Alignment explanation
Indices: 80528449--80528519 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
80528439 CTCTATATAA
*
80528449 TTTAGAGTTTACACACCCCCAAACTTAATTCATTACT
1 TTTAGAGTTTACACACCCCCAAACTTAATCCATTACT
80528486 TTTAGAGTTTACACACCCCCAAACTTAATCCATT
1 TTTAGAGTTTACACACCCCCAAACTTAATCCATT
80528520 GCTTGTCTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (37 bp):
TTTAGAGTTTACACACCCCCAAACTTAATCCATTACT
Found at i:80532866 original size:43 final size:43
Alignment explanation
Indices: 80532819--80532923 Score: 140
Period size: 43 Copynumber: 2.4 Consensus size: 43
80532809 TAGCCCAACT
*
80532819 ATGGTCTTACTCGA-AATCAAATAACGATGCAAATGTCCCAGAC
1 ATGGTCTTACAC-ATAATCAAATAACGATGCAAATGTCCCAGAC
** * * *
80532862 ATGGTCTTACACATAATCACGTAATGATGCCAATGTCCCAGGC
1 ATGGTCTTACACATAATCAAATAACGATGCAAATGTCCCAGAC
80532905 ATGGTCTTACACATAATCA
1 ATGGTCTTACACATAATCA
80532924 CTCCTTGTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.02
43 54 0.98
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACATAATCAAATAACGATGCAAATGTCCCAGAC
Found at i:80542951 original size:37 final size:37
Alignment explanation
Indices: 80542892--80543000 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
80542882 AGCTCAGATG
* *
80542892 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80542929 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
80542966 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
80543001 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Done.