Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 245 of 356
Found at i:80543256 original size:47 final size:46
Alignment explanation
Indices: 80543163--80543299 Score: 186
Period size: 47 Copynumber: 3.0 Consensus size: 46
80543153 TTTCACACTA
* * *
80543163 GCCATTCGGCTTTACCACATATA-CATGCTCACATTCTTCACATTG
1 GCCATTCGGCTTTATCACATATATCATGTTCACATTCATCACATTG
*
80543208 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCTTTATCACATATAT-CATGTTCACATTCATCACATTG
* **
80543255 GCCATTCGGCTTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCTTTATCACATATAT-CATGTTCACATTCATCACAT
80543300 AAAATCCTAA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 21 0.26
47 60 0.74
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34
Consensus pattern (46 bp):
GCCATTCGGCTTTATCACATATATCATGTTCACATTCATCACATTG
Found at i:80553296 original size:47 final size:48
Alignment explanation
Indices: 80553227--80553350 Score: 146
Period size: 47 Copynumber: 2.6 Consensus size: 48
80553217 GTATAATGTC
** * *
80553227 GATGCCATG-CCCTAGACATGGTCTTACACTGGCTCATC-CATCAA-GTT
1 GATGCCATGTCCC-AGACATGGTCTTACACTAACT-ATCAAATCAAGGCT
80553274 GATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCAAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAACTATC-AAATCAAGGCT
**
80553323 GACACCATGTCCCAGACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
80553351 TTAGCTCTCA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
46 3 0.04
47 28 0.42
48 8 0.12
49 28 0.42
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAATCAAGGCT
Found at i:80553535 original size:94 final size:92
Alignment explanation
Indices: 80553416--80553586 Score: 211
Period size: 94 Copynumber: 1.8 Consensus size: 92
80553406 ACGTCTCGTA
* * *
80553416 GCCGATGCATGTCCCAAACATGTCTTACATTGGCT-TACAT-CTCGAGGCCAATACATGTCCCAG
1 GCCGATGCATGTACCAAACATGTCTTACACTGGCTCT-CATAAT-GAGGCCAATACATGTCCCAG
80553479 ACATGTCTTACACTAGCTCTTGTCTCAAT
64 ACATGTCTTACACTAGCTCTTGTCTCAAT
** * * * *
80553508 GCCGATGCCATGTACCGGACATGGTCTTACACTGGCTCTCGTAATGTGGCCGATGCATGTCCCAG
1 GCCGATG-CATGTACCAAACAT-GTCTTACACTGGCTCTCATAATGAGGCCAATACATGTCCCAG
80553573 ACATGTCTTACACT
64 ACATGTCTTACACT
80553587 GGCACACAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
92 7 0.11
93 11 0.17
94 46 0.70
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTACCAAACATGTCTTACACTGGCTCTCATAATGAGGCCAATACATGTCCCAGAC
ATGTCTTACACTAGCTCTTGTCTCAAT
Found at i:80553589 original size:46 final size:46
Alignment explanation
Indices: 80553416--80553589 Score: 151
Period size: 46 Copynumber: 3.7 Consensus size: 46
80553406 ACGTCTCGTA
* * * * *
80553416 GCCGATGCATGTCCCAAACATGTCTTACATTGGCT-TACAT-CTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTAAT-GTG
* * * *
80553462 GCCAATACATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAA--T-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCG--T-AATGTG
* *
80553508 GCCGATGCCATGTACCGGACATGGTCTTACACTGGCTCTCGTAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTAATGTG
80553556 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
80553590 ACACAAATAA
Statistics
Matches: 101, Mismatches: 17, Indels: 20
0.73 0.12 0.14
Matches are distributed among these distances:
45 2 0.02
46 49 0.49
47 26 0.26
48 24 0.24
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTAATGTG
Found at i:80559511 original size:45 final size:44
Alignment explanation
Indices: 80559412--80559629 Score: 165
Period size: 45 Copynumber: 4.8 Consensus size: 44
80559402 AAATATTTGT
* *
80559412 GCCGATGCCATGTCCCAGACTTGGTCTTACACTGAC--ACATCTC-G
1 GCCGATG-CATGT-CCAGACAT-GTCTTACACTGGCTTACATCTCAG
80559456 TAGCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCAG
1 --GCCGATGCATGTCC-AGACATGTCTTACACTGGCTTACATCTCAG
* * ** *
80559503 GCCAATGCATGTCCCAGACATGTCTTACACTAGCTCT-TGTCTCAAT
1 GCCGATGCATGT-CCAGACATGTCTTACACTGGCT-TACATCTC-AG
* ** * * **
80559549 GCCGATGCCTTGTTCCAGACATGGTCTTACACTGGCTCCCGTAATGTG
1 GCCGATG-CATG-TCCAGACAT-GTCTTACACTGGCTTACAT-CTCAG
80559597 GCCGATGCATGTCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCAGACATGTCTTACACTGGC
80559630 ACACAAATAA
Statistics
Matches: 143, Mismatches: 17, Indels: 25
0.77 0.09 0.14
Matches are distributed among these distances:
44 14 0.10
45 57 0.40
46 33 0.23
47 15 0.10
48 23 0.16
49 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCAGACATGTCTTACACTGGCTTACATCTCAG
Found at i:80567156 original size:43 final size:43
Alignment explanation
Indices: 80567109--80567206 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
80567099 TAGCTTAGCT
*
80567109 ATGGTCTTACTCGAAATCAAATAACAATGCCAATGTCCCAAAC
1 ATGGTCTTACACGAAATCAAATAACAATGCCAATGTCCCAAAC
* * *** *
80567152 ATGGTCTTACACGTAATCACATATTGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATAACAATGCCAATGTCCCAAAC
80567195 ATGGTCTTACAC
1 ATGGTCTTACAC
80567207 ATAATCACAC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAACAATGCCAATGTCCCAAAC
Found at i:80569557 original size:19 final size:19
Alignment explanation
Indices: 80569513--80569559 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
80569503 ATGGTATGAT
*
80569513 GGCGTTAGGAGTAAGGATA
1 GGCGTTGGGAGTAAGGATA
80569532 GGCGTTGGGAGTAAGGATA
1 GGCGTTGGGAGTAAGGATA
*
80569551 GGTGTTGGG
1 GGCGTTGGG
80569560 TTCAAGTTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.23, C:0.04, G:0.49, T:0.23
Consensus pattern (19 bp):
GGCGTTGGGAGTAAGGATA
Found at i:80571075 original size:17 final size:17
Alignment explanation
Indices: 80571034--80571076 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
80571024 GTAGATCGGT
80571034 AAAAGCC-AAAATACCA
1 AAAAGCCTAAAATACCA
**
80571050 AAAAG-CTAAAATGTCA
1 AAAAGCCTAAAATACCA
80571066 AAAAGCCTAAA
1 AAAAGCCTAAA
80571077 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 1 0.04
16 17 0.74
17 5 0.22
ACGTcount: A:0.60, C:0.19, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAAGCCTAAAATACCA
Found at i:80571331 original size:28 final size:29
Alignment explanation
Indices: 80571291--80571403 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 29
80571281 CATGACTGTA
80571291 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
80571319 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
80571348 AATTTGATTTGGGCTTCATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * * *
80571377 AAAGAGA-TTGGGCCTAGTGGGCTATAT
1 AATGTGATTTGGGCCTAATGGGCCATAT
80571404 ACAGGTATGT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 35 0.49
29 37 0.51
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:80571355 original size:29 final size:29
Alignment explanation
Indices: 80571289--80571404 Score: 139
Period size: 28 Copynumber: 4.1 Consensus size: 29
80571279 AGCATGACTG
80571289 TAAATGTGATTTGGGCCTAAT-GGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
*
80571317 TGAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* * *
80571346 TAAATTTGATTTGGGCTTCATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* * *
80571375 TGAAA-GAGA-TTGGGCCTAGTGGGCTATA
1 T-AAATGTGATTTGGGCCTAATGGGCCATA
80571403 TA
1 TA
80571405 CAGGTATGTG
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
27 1 0.01
28 36 0.48
29 35 0.47
30 3 0.04
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCATA
Found at i:80571388 original size:57 final size:57
Alignment explanation
Indices: 80571289--80571404 Score: 153
Period size: 57 Copynumber: 2.0 Consensus size: 57
80571279 AGCATGACTG
* *
80571289 TAAATGTGATTTGGGCCTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCATA
* * * * *
80571346 TAAATTTGATTTGGGCTTCATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGCTATA
1 TAAATGTGATTTGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGCCATA
80571403 TA
1 TA
80571405 CAGGTATGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 37 0.73
58 14 0.27
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCATA
Found at i:80573013 original size:28 final size:28
Alignment explanation
Indices: 80572915--80573014 Score: 137
Period size: 28 Copynumber: 3.5 Consensus size: 28
80572905 GTTGATTTTG
* * **
80572915 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
80572944 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
80572972 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80573000 ACACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
80573015 ACTTACTATA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 47 0.73
29 17 0.27
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80580977 original size:29 final size:28
Alignment explanation
Indices: 80580930--80581056 Score: 132
Period size: 29 Copynumber: 4.5 Consensus size: 28
80580920 CATGAGATTG
* *
80580930 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-AATTGTATA
* * *
80580959 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
*
80580987 GCACTAAGTGTGCGAGTTTGATTATGTA-A
1 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
* *
80581016 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
*
80581043 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
80581057 GACTTACTAT
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
26 3 0.04
27 15 0.18
28 26 0.32
29 35 0.43
30 3 0.04
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:80580996 original size:28 final size:28
Alignment explanation
Indices: 80580930--80581056 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
80580920 CATGAGATTG
* * **
80580930 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
80580959 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80580987 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
80581016 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80581043 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
80581057 GACTTACTAT
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 14 0.16
28 40 0.45
29 34 0.39
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80581019 original size:57 final size:56
Alignment explanation
Indices: 80580930--80581056 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 56
80580920 CATGAGATTG
*
80580930 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAG-TTGATTATATA
* * * *
80580987 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTGATTATATA
*
80581043 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
80581057 GACTTACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
56 24 0.38
57 36 0.57
58 3 0.05
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (56 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTGATTATATA
Found at i:80592037 original size:19 final size:19
Alignment explanation
Indices: 80592013--80592051 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
80592003 ACATTACATG
* *
80592013 CACACATGATTCCACTAAT
1 CACACACGATTCCACCAAT
*
80592032 CACACACGGTTCCACCAAT
1 CACACACGATTCCACCAAT
80592051 C
1 C
80592052 CATTAATGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.33, C:0.38, G:0.08, T:0.21
Consensus pattern (19 bp):
CACACACGATTCCACCAAT
Found at i:80601962 original size:24 final size:24
Alignment explanation
Indices: 80601911--80602079 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
80601901 GCTTTATCAT
*
80601911 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
80601936 ATAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
80601960 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
80601984 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80602008 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
80602033 ATAACTGGGGAATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
80602057 ATAACTGGGGCATAAGCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80602080 GCACTTCCTC
Statistics
Matches: 132, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
24 98 0.74
25 34 0.26
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:80602048 original size:73 final size:72
Alignment explanation
Indices: 80601911--80602079 Score: 250
Period size: 73 Copynumber: 2.3 Consensus size: 72
80601901 GCTTTATCAT
* *
80601911 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGAATAA
*
80601975 GCCCTTTTG
64 GCCCTTTTA
* *
80601984 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGAATAAG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAAGCCC-TTTTAATAACTGGGGAATAAG
80602049 CCCTTTTA
65 CCCTTTTA
*
80602057 ATAACTGGGGCATAAGCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80602080 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
72 27 0.31
73 61 0.69
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGAATAAGC
CCTTTTA
Found at i:80602154 original size:20 final size:20
Alignment explanation
Indices: 80602129--80602195 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
80602119 TTATGAATAC
80602129 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
80602149 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
80602169 GTCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
*
80602189 ACCATGT
1 ATCATGT
80602196 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:80602160 original size:11 final size:11
Alignment explanation
Indices: 80602129--80602185 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
80602119 TTATGAATAC
80602129 ATCATGTGCAT
1 ATCATGTGCAT
*
80602140 ATCA--TACAT
1 ATCATGTGCAT
80602149 ATCATGTGCAT
1 ATCATGTGCAT
*
80602160 ATCA--TACAT
1 ATCATGTGCAT
*
80602169 GTCATGTGCAT
1 ATCATGTGCAT
80602180 ATCATG
1 ATCATG
80602186 CATACCATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:80602260 original size:25 final size:25
Alignment explanation
Indices: 80602232--80602279 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80602222 ATATATAAAC
* * *
80602232 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTTATTTTTA
80602257 CCTAGGGGCAAAACGGTTATTTT
1 CCTAGGGGCAAAACGGTTATTTT
80602280 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTTATTTTTA
Found at i:80608382 original size:21 final size:20
Alignment explanation
Indices: 80608356--80608394 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
80608346 GATTATTTTT
80608356 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
80608377 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
80608395 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:80611835 original size:39 final size:39
Alignment explanation
Indices: 80611778--80611855 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
80611768 TGGGACTAAG
*
80611778 CCAATAACTTTAGGAACTTTTTGAACACTTAAAAAATTT
1 CCAATAACTTTAGAAACTTTTTGAACACTTAAAAAATTT
*
80611817 CCAATAACTTTAGAAACTTTTTGAACACTTAGAAAATTT
1 CCAATAACTTTAGAAACTTTTTGAACACTTAAAAAATTT
80611856 TCTCAAAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (39 bp):
CCAATAACTTTAGAAACTTTTTGAACACTTAAAAAATTT
Found at i:80615340 original size:48 final size:48
Alignment explanation
Indices: 80615282--80615617 Score: 499
Period size: 48 Copynumber: 7.0 Consensus size: 48
80615272 AATGTGTATA
*
80615282 TATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
80615330 TATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATG
80615380 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
80615428 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
80615475 TATGAGATATG--TAT-T-GT-AATCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
80615518 TATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATG
*
80615568 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
80615616 TA
1 TA
80615618 GGCGATGTGC
Statistics
Matches: 263, Mismatches: 11, Indels: 28
0.87 0.04 0.09
Matches are distributed among these distances:
42 18 0.07
43 19 0.07
44 1 0.00
45 6 0.02
46 1 0.00
47 21 0.08
48 104 0.40
49 8 0.03
50 83 0.32
51 2 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:80615380 original size:98 final size:98
Alignment explanation
Indices: 80615278--80615631 Score: 564
Period size: 98 Copynumber: 3.7 Consensus size: 98
80615268 TGTGAATGTG
*
80615278 TATATATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGCA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
80615343 TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
66 TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
*
80615376 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
80615441 TATGTGGTAAAGCCGAATGG-CTAATGTG--A-A
66 TATGTGGTAAAGCCGAATGGTC-AATGTGAAATA
* *
80615471 TATGTATGAGATATG--TAT-T-GT-AATCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
80615531 TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
66 TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
* * * *
80615564 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
80615629 TAT
66 TAT
80615632 ATTGTGGCCG
Statistics
Matches: 235, Mismatches: 11, Indels: 20
0.88 0.04 0.08
Matches are distributed among these distances:
90 63 0.27
91 3 0.01
92 2 0.01
93 18 0.08
95 18 0.08
96 2 0.01
97 3 0.01
98 126 0.54
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (98 bp):
TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
TATGTGGTAAAGCCGAATGGTCAATGTGAAATA
Found at i:80621847 original size:28 final size:28
Alignment explanation
Indices: 80621792--80621874 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
80621782 AGCATGGCTG
* *
80621792 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
** *
80621818 CCAGTTACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* *
80621846 CCAGAAACAGATATTTGTAGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
80621874 C
1 C
80621875 TAAAATGCTT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
26 4 0.09
27 6 0.13
28 36 0.78
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGGCAGAGCCA
Found at i:80623680 original size:168 final size:167
Alignment explanation
Indices: 80623403--80623733 Score: 500
Period size: 168 Copynumber: 2.0 Consensus size: 167
80623393 CGCCCTTGTA
* *
80623403 CCTTCACCCGAGCTGCTAGCCACTGCACCACACTTCTTCCTTCCTAATATGTGGTCACAATTAAT
1 CCTTCACCCGAGCTGCTAGCCACTGCACCACACTTCTTCCTTACTAATATATGGTCACAATTAAT
* *
80623468 TTTAACCATTAAACTGCTTCAGTTCTGGCCCGTTTAAAAAATAAAACAAAATTTGCCCTCCCCTG
66 TTTAACCATTAAACCGCTTCAGTTCTGGCCCGTTTAAAAAATAAAACAAAATTCGCCCTCCCCTG
80623533 AAATCAAACTCATAACCTCCCGACAGGCCTAGCTGCG
131 AAATCAAACTCATAACCTCCCGACAGGCCTAGCTGCG
* * * * *
80623570 CCTTCACCCGAGCTGCTGGCCACTGCACCACGCTTTTTCTTTTATTAATATATGGTCACAATTAA
1 CCTTCACCCGAGCTGCTAGCCACTGCACCACACTTCTTC-CTTACTAATATATGGTCACAATTAA
* * * * *
80623635 TTTTAACCTTTAATCCGCTTCAGTTCTGGCCCGTTTAAAAAATAAAACAGAATTCGCCTTCTCCT
65 TTTTAACCATTAAACCGCTTCAGTTCTGGCCCGTTTAAAAAATAAAACAAAATTCGCCCTCCCCT
* * *
80623700 GGAATCGAACTCATAACCTCCCGGCAGGCCTAGC
130 GAAATCAAACTCATAACCTCCCGACAGGCCTAGC
80623734 ACGCTGTTGC
Statistics
Matches: 146, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
167 36 0.25
168 110 0.75
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.29
Consensus pattern (167 bp):
CCTTCACCCGAGCTGCTAGCCACTGCACCACACTTCTTCCTTACTAATATATGGTCACAATTAAT
TTTAACCATTAAACCGCTTCAGTTCTGGCCCGTTTAAAAAATAAAACAAAATTCGCCCTCCCCTG
AAATCAAACTCATAACCTCCCGACAGGCCTAGCTGCG
Found at i:80624249 original size:16 final size:16
Alignment explanation
Indices: 80624228--80624261 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
80624218 TAAACCTACA
*
80624228 AAATAATAATAATAAT
1 AAATAATAATAACAAT
80624244 AAATAATAATAACAAT
1 AAATAATAATAACAAT
80624260 AA
1 AA
80624262 CATCCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATAATAATAACAAT
Found at i:80626622 original size:17 final size:16
Alignment explanation
Indices: 80626583--80626623 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
80626573 AATATAATGC
80626583 CCCAAAAATTTCAAAA
1 CCCAAAAATTTCAAAA
*
80626599 CCCAAAAATTTCGAAA
1 CCCAAAAATTTCAAAA
80626615 CCCAAAAAT
1 CCCAAAAAT
80626624 CCGGAAATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.54, C:0.27, G:0.02, T:0.17
Consensus pattern (16 bp):
CCCAAAAATTTCAAAA
Found at i:80628154 original size:28 final size:29
Alignment explanation
Indices: 80628123--80628233 Score: 140
Period size: 28 Copynumber: 4.0 Consensus size: 29
80628113 CATGACTGTA
*
80628123 AATGTGATTTGGGCTTAAT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* *
80628151 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATGGGCCATATG
80628180 AATGTGA--TGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
80628207 AAAGAGA-TTGGGCCTAGTGGGCCATAT
1 AATGTGATTTGGGCCTAATGGGCCATAT
80628234 ACAGGTATGT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.32
28 36 0.49
29 14 0.19
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:80628218 original size:55 final size:56
Alignment explanation
Indices: 80628121--80628230 Score: 152
Period size: 55 Copynumber: 2.0 Consensus size: 56
80628111 AGCATGACTG
* * *
80628121 TAAATGTGATTTGGGCTTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
*
80628178 TAAATGTGA-TGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGCCA
1 TAAATGTGATTGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
80628231 TATACAGGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 25 0.52
56 14 0.29
57 9 0.19
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
Found at i:80634118 original size:16 final size:17
Alignment explanation
Indices: 80634088--80634120 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80634078 AGATTGAATT
*
80634088 GAAAAATCACTTAGTTA
1 GAAAAATAACTTAGTTA
80634105 GAAAAATAAC-TAGTTA
1 GAAAAATAACTTAGTTA
80634121 TCAATTGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.52, C:0.09, G:0.12, T:0.27
Consensus pattern (17 bp):
GAAAAATAACTTAGTTA
Found at i:80643953 original size:10 final size:10
Alignment explanation
Indices: 80643940--80643970 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
80643930 TAGAAAAATT
80643940 AGAAAATAAA
1 AGAAAATAAA
80643950 AGAAAATAAA
1 AGAAAATAAA
80643960 AGAAAATAAA
1 AGAAAATAAA
80643970 A
1 A
80643971 ACTTAAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.10
Consensus pattern (10 bp):
AGAAAATAAA
Found at i:80650900 original size:23 final size:23
Alignment explanation
Indices: 80650873--80650919 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
80650863 TTTCTCAAAG
80650873 TAAGTTTAAGCTACTGTGTTTCT
1 TAAGTTTAAGCTACTGTGTTTCT
80650896 TAAGTTTAAGCTACTGTGTTTCT
1 TAAGTTTAAGCTACTGTGTTTCT
80650919 T
1 T
80650920 TCCTTTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (23 bp):
TAAGTTTAAGCTACTGTGTTTCT
Found at i:80651618 original size:71 final size:71
Alignment explanation
Indices: 80651502--80651643 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
80651492 TTTAAAAAGA
80651502 AATTCATTATACTGGGCCATTCCAACCAAGTGTTACTGTACTCTAACTCGTTCATTTGTGGGGAG
1 AATTCATTATACTGGGCCATTCCAACCAAGTGTTACTGTACTCTAACTCGTTCATTTGTGGGGAG
80651567 CCTAAT
66 CCTAAT
*
80651573 AATTCATTATACTGGGCCATTCCAACCAAGTGTTACTGTACTCTAACTCGTTCGTTTGTGGGGAG
1 AATTCATTATACTGGGCCATTCCAACCAAGTGTTACTGTACTCTAACTCGTTCATTTGTGGGGAG
80651638 CCTAAT
66 CCTAAT
80651644 CCGAAATCAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (71 bp):
AATTCATTATACTGGGCCATTCCAACCAAGTGTTACTGTACTCTAACTCGTTCATTTGTGGGGAG
CCTAAT
Found at i:80651686 original size:47 final size:47
Alignment explanation
Indices: 80651613--80651708 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
80651603 TGTTACTGTA
80651613 CTCTAACTCGTTCGTTTGTGGGGAGCCTAATCCGAAATCATTTCCAT
1 CTCTAACTCGTTCGTTTGTGGGGAGCCTAATCCGAAATCATTTCCAT
* * *
80651660 CTCTAACTCTTTCGTTTGTGGTGAGCCTAGTCCGAAATCATTTCCAT
1 CTCTAACTCGTTCGTTTGTGGGGAGCCTAATCCGAAATCATTTCCAT
80651707 CT
1 CT
80651709 ATCAGCATTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (47 bp):
CTCTAACTCGTTCGTTTGTGGGGAGCCTAATCCGAAATCATTTCCAT
Found at i:80654615 original size:9 final size:9
Alignment explanation
Indices: 80654597--80654637 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
80654587 TTATACCAAA
80654597 AATAAAAAT
1 AATAAAAAT
*
80654606 AATAACAAT
1 AATAAAAAT
80654615 AATAATAAA-
1 AATAA-AAAT
80654624 AATAAAAAT
1 AATAAAAAT
80654633 AATAA
1 AATAA
80654638 TTAATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 3 0.11
9 23 0.82
10 2 0.07
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (9 bp):
AATAAAAAT
Found at i:80655332 original size:19 final size:20
Alignment explanation
Indices: 80655289--80655332 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
80655279 GATTTTCAGG
* *
80655289 TATATTTTATTATGATTTAT
1 TATATTATATCATGATTTAT
80655309 T-TATTATATCATG-TTTAT
1 TATATTATATCATGATTTAT
80655327 TATATT
1 TATATT
80655333 TGGAGACCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 6 0.29
19 14 0.67
20 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (20 bp):
TATATTATATCATGATTTAT
Found at i:80659913 original size:18 final size:18
Alignment explanation
Indices: 80659872--80659907 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80659862 CATTCCGAAG
* *
80659872 TATATATATATATACATA
1 TATATGTATATATACACA
80659890 TATATGTATATATACACA
1 TATATGTATATATACACA
80659908 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:80660420 original size:28 final size:28
Alignment explanation
Indices: 80660383--80660564 Score: 312
Period size: 28 Copynumber: 6.5 Consensus size: 28
80660373 TAAATTGTAC
*
80660383 AGCACTAAGTGTGCGAACTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
80660411 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
80660439 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
80660467 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
80660495 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
80660523 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
80660550 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80660565 GACTTATTAT
Statistics
Matches: 150, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 126 0.84
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:80668120 original size:18 final size:18
Alignment explanation
Indices: 80668078--80668120 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
80668068 GCCCATTCCG
* *
80668078 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
80668096 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
80668114 AAGTATG
1 AAGTATG
80668121 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:80668646 original size:28 final size:27
Alignment explanation
Indices: 80668589--80668740 Score: 250
Period size: 27 Copynumber: 5.6 Consensus size: 27
80668579 TAAATTGTGC
*
80668589 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
80668616 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
80668644 AGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
80668671 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
80668699 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
80668726 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80668741 GACTTATATA
Statistics
Matches: 120, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
27 68 0.57
28 52 0.43
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:80668654 original size:55 final size:55
Alignment explanation
Indices: 80668564--80668740 Score: 273
Period size: 55 Copynumber: 3.2 Consensus size: 55
80668554 GAGATTGGCG
* * * * *
80668564 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAGTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCACTAAGTGTGCGAGTTGATTATGTAGCA
80668620 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATGTAGCA
* *
80668675 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATGTAGCA
*
80668730 CTGAGTGTGCG
1 CTAAGTGTGCG
80668741 GACTTATATA
Statistics
Matches: 113, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
55 98 0.87
56 15 0.13
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATGTAGCA
Found at i:80688281 original size:43 final size:41
Alignment explanation
Indices: 80688169--80688332 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 41
80688159 AGCTTGTACA
* * ** *
80688169 ATGCC-ATATCCCAGATATGGTCTTACATGTTATTATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA-ATA-CG
* *
80688211 ATGCCACTGTCCC-GAACAGGGTCTTACATGAAATCAATTAACG
1 ATGCCAATGTCCCAG-ACATGGTCTTACATGAAATCAA-T-ACG
* * *
80688254 ATGCCAATGTCCCAGACATGGTTTTACACGTAATCTCAATAC-
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AA-ATCAATACG
* *
80688296 ATTGCCAATGTCCCAGACATAGTCTTACATGTAATCA
1 A-TGCCAATGTCCCAGACATGGTCTTACATGAAATCA
80688333 CATCTTGATA
Statistics
Matches: 97, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
41 3 0.03
42 9 0.09
43 76 0.78
44 5 0.05
45 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAATACG
Found at i:80691702 original size:18 final size:18
Alignment explanation
Indices: 80691681--80691715 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80691671 AAAAATCATA
*
80691681 AATAGTTTAAAATATTTT
1 AATAATTTAAAATATTTT
80691699 AATAATTTAAAATATTT
1 AATAATTTAAAATATTT
80691716 GTAAACTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
AATAATTTAAAATATTTT
Found at i:80694848 original size:46 final size:44
Alignment explanation
Indices: 80694795--80694922 Score: 152
Period size: 46 Copynumber: 2.8 Consensus size: 44
80694785 AAGACGAGAA
* *
80694795 CTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGTAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG-T-AAAG
*
80694841 -TCAGTGTAAGACATGTATGGGACATGCATCGGC-TACGAGTAAAG
1 CT-AGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGTAAAG
*
80694885 CTAGTGTAAGACCATGTCTGAGACATGGCATCGGCATC
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATC
80694923 CTACCCCATA
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
44 12 0.17
45 16 0.23
46 42 0.59
47 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (44 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGTAAAG
Found at i:80701892 original size:30 final size:30
Alignment explanation
Indices: 80701858--80701939 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
80701848 ATTTTCGGAC
*
80701858 CTAGGGGTAAAATGGTCATTTTACAAAAGT
1 CTAGGGGCAAAATGGTCATTTTACAAAAGT
* *
80701888 CTAGGCGCAAAATGGTCATTTTGCAAAAGT
1 CTAGGGGCAAAATGGTCATTTTACAAAAGT
80701918 CTAGGGGCAAAATGGTCATTTT
1 CTAGGGGCAAAATGGTCATTTT
80701940 TCCCAAGTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACAAAAGT
Found at i:80704060 original size:27 final size:28
Alignment explanation
Indices: 80703976--80704073 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
80703966 CATGAGATTG
* * * *
80703976 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
80704005 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
80704033 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80704060 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80704074 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80704084 original size:27 final size:27
Alignment explanation
Indices: 80704004--80704086 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
80703994 TAAATTGTAC
* *
80704004 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80704032 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
80704059 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
80704086 A
1 A
80704087 TATTTTTGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:80704087 original size:29 final size:27
Alignment explanation
Indices: 80703976--80704088 Score: 100
Period size: 28 Copynumber: 4.0 Consensus size: 27
80703966 CATGAGATTG
** * *
80703976 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
80704005 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
80704033 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
80704060 GCACTGAGTGTGCGGACTTAATATATATA
1 GCACTAAGTGTGC-GACTTAAT-TATATA
80704089 TTTTTGAATC
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.38
29 22 0.30
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:80712142 original size:27 final size:28
Alignment explanation
Indices: 80712058--80712155 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
80712048 TCATGAGATT
* * * *
80712058 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
80712087 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
80712115 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80712142 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80712156 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80712166 original size:27 final size:27
Alignment explanation
Indices: 80712086--80712168 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
80712076 TAAATTGTAC
* *
80712086 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80712114 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
80712141 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
80712168 A
1 A
80712169 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:80712169 original size:29 final size:27
Alignment explanation
Indices: 80712058--80712169 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
80712048 TCATGAGATT
** * *
80712058 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
80712087 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
80712115 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
80712142 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
80712170 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:80717938 original size:46 final size:46
Alignment explanation
Indices: 80717889--80718063 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
80717879 GGTTGAGCAT
* *
80717889 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * *
80717935 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCAC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--C
80717982 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *
80718028 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80718064 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 28 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:80719613 original size:27 final size:27
Alignment explanation
Indices: 80719569--80719674 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 27
80719559 CAGTAATAAT
* * **
80719569 AATGTAGCATAGCTACCAAAAACAGTG
1 AATGTGGCATAGCCACCAGTAACAGTG
* *
80719596 AATGTGGCAAAGCCACCAGTATCAGT-
1 AATGTGGCATAGCCACCAGTAACAGTG
*
80719622 AATTGTGGCATAGCCACTAGTAACAGTG
1 AA-TGTGGCATAGCCACCAGTAACAGTG
* *
80719650 AATGTGACATAGTCACCAGT-ACAGT
1 AATGTGGCATAGCCACCAGTAACAGT
80719675 ACTTCCTCCA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 7 0.11
27 56 0.86
28 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
AATGTGGCATAGCCACCAGTAACAGTG
Found at i:80719858 original size:26 final size:26
Alignment explanation
Indices: 80719798--80719910 Score: 97
Period size: 26 Copynumber: 4.3 Consensus size: 26
80719788 GAATACTCAT
* * *
80719798 GTCATTTTACCCTATAAGGGCATTA-T
1 GTCA-TTTACCCTACAGGGGCATTACA
80719824 GATCAATTTACCCTACAGGGGCATTACA
1 G-TC-ATTTACCCTACAGGGGCATTACA
* * *
80719852 GTTATTTTAGCC-ACAGGGGCATTACG
1 GTCA-TTTACCCTACAGGGGCATTACA
*
80719878 GTCATTTACCCTATAGGGGCATTAC-
1 GTCATTTACCCTACAGGGGCATTACA
80719903 GATCATTT
1 G-TCATTT
80719911 TACTAATTTC
Statistics
Matches: 72, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
25 7 0.10
26 36 0.50
27 27 0.38
28 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GTCATTTACCCTACAGGGGCATTACA
Found at i:80720838 original size:22 final size:23
Alignment explanation
Indices: 80720813--80720872 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
80720803 TGGACTGAAT
80720813 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
80720835 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
80720857 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
80720873 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:80720840 original size:4 final size:4
Alignment explanation
Indices: 80720822--80720855 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
80720812 TATAAAAATT
80720822 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
80720856 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:80722261 original size:23 final size:22
Alignment explanation
Indices: 80722210--80722261 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
80722200 CCTCGTCTTT
*
80722210 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
80722232 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
80722255 TTCTTTT
1 TTCTTTT
80722262 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:80722276 original size:18 final size:18
Alignment explanation
Indices: 80722255--80722293 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
80722245 TTTCTTCAAC
* *
80722255 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
80722273 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
80722291 TTC
1 TTC
80722294 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:80724649 original size:22 final size:23
Alignment explanation
Indices: 80724624--80724683 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
80724614 TGGGCTGAAT
80724624 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
80724646 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
80724668 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
80724684 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:80724651 original size:4 final size:4
Alignment explanation
Indices: 80724633--80724666 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
80724623 TATAAAAATT
80724633 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
80724667 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:80726745 original size:29 final size:29
Alignment explanation
Indices: 80726696--80726755 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
80726686 TGCAGTAGAC
* *
80726696 AATCAATTGTGTTATTTACTTGCACAACT
1 AATCAATTGTGTCATTCACTTGCACAACT
80726725 AATCAATTGTGTCATTCACTTGCACAACT
1 AATCAATTGTGTCATTCACTTGCACAACT
80726754 AA
1 AA
80726756 CTTTCAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (29 bp):
AATCAATTGTGTCATTCACTTGCACAACT
Found at i:80727922 original size:26 final size:27
Alignment explanation
Indices: 80727865--80727925 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
80727855 ATCTCTTTCA
* *
80727865 AAAACCCAAAGTTTAGAAAAACTTTTG
1 AAAACCCAAAGTTTAGAAAAAATTTAG
*
80727892 AAAACCCAAATTTTAGAAAAAATTTAG
1 AAAACCCAAAGTTTAGAAAAAATTTAG
80727919 -AAACCCA
1 AAAACCCA
80727926 TTCCACAGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 7 0.23
27 24 0.77
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.23
Consensus pattern (27 bp):
AAAACCCAAAGTTTAGAAAAAATTTAG
Found at i:80728866 original size:27 final size:27
Alignment explanation
Indices: 80728805--80728881 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
80728795 CCAAAAATAG
* * * *
80728805 TGAATATGGCAAAGCCACCAGTATCAG
1 TGAATGTGGCATAGCCACCAGTAACAA
80728832 T-AATTGTGGCATAGCCACCAGTAACAA
1 TGAA-TGTGGCATAGCCACCAGTAACAA
* * *
80728859 TGAATGTGACATAGTCATCAGTA
1 TGAATGTGGCATAGCCACCAGTA
80728882 CAGTACTTCC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.05
27 37 0.90
28 2 0.05
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
TGAATGTGGCATAGCCACCAGTAACAA
Found at i:80729058 original size:27 final size:27
Alignment explanation
Indices: 80729026--80729169 Score: 198
Period size: 27 Copynumber: 5.3 Consensus size: 27
80729016 CATACTCATA
*
80729026 TCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
80729053 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
80729080 TCATTTTATCCTACAAGGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
80729107 TCAATGTACCCTACAGGGGCAATACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* **
80729134 TCATTTTACCCTACAGGAGCATTACAA
1 TCATTTTACCCTACAGGGGCATTACGG
80729161 TCATTTTAC
1 TCATTTTAC
80729170 TAATTTTGGG
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGG
Found at i:80742254 original size:49 final size:49
Alignment explanation
Indices: 80742198--80742698 Score: 750
Period size: 49 Copynumber: 10.6 Consensus size: 49
80742188 TATTTGAATA
80742198 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
80742247 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80742296 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
80742344 AATGTG-AA--GT-TATATATGTGAT-A-G--GAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
80742384 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
80742433 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80742482 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80742531 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80742578 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
80742625 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
80742672 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
80742699 TCCCGAAGGG
Statistics
Matches: 426, Mismatches: 14, Indels: 26
0.91 0.03 0.06
Matches are distributed among these distances:
40 19 0.04
41 3 0.01
42 1 0.00
43 3 0.01
44 24 0.06
45 3 0.01
46 1 0.00
47 144 0.34
48 24 0.06
49 204 0.48
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:80742484 original size:186 final size:192
Alignment explanation
Indices: 80742198--80742698 Score: 828
Period size: 186 Copynumber: 2.7 Consensus size: 192
80742188 TATTTGAATA
80742198 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
80742263 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
80742328 TAATGG-CGATGTGATGAATGTG-AAGT-TATATATGTGAT-AGG-AATGGCC-ATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCAATGGCCGATGTGATG
80742384 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
80742449 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
80742514 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-C-AATGGCCGATGTGATG
* *
80742578 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * * *
80742639 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
80742699 TCCCGAAGGG
Statistics
Matches: 298, Mismatches: 9, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
186 135 0.45
187 16 0.05
188 14 0.05
189 13 0.04
190 48 0.16
192 45 0.15
193 7 0.02
194 20 0.07
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (192 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCAATGGCCGATGTGATG
Found at i:80745907 original size:18 final size:18
Alignment explanation
Indices: 80745886--80745948 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 18
80745876 ATACTCACTC
80745886 TCTTTTTCAATTTTCTTT
1 TCTTTTTCAATTTTCTTT
** *
80745904 TCTTGATCGAATTCT-TTT
1 TCTTTTTC-AATTTTCTTT
80745922 TCTTTTTCAA-TTTCGTTTT
1 TCTTTTTCAATTTTC--TTT
80745941 TCTTTTTC
1 TCTTTTTC
80745949 TCATTCTCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
16 2 0.06
17 2 0.06
18 15 0.43
19 16 0.46
ACGTcount: A:0.11, C:0.17, G:0.05, T:0.67
Consensus pattern (18 bp):
TCTTTTTCAATTTTCTTT
Found at i:80751173 original size:27 final size:27
Alignment explanation
Indices: 80751143--80751484 Score: 183
Period size: 27 Copynumber: 12.7 Consensus size: 27
80751133 CCTTAAATTG
*
80751143 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
****
80751170 TAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *****
80751197 TAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *** *
80751224 TAGAATTACTATTTTACCCT-TATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * ***
80751250 CAGAATTACTATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
80751277 CAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
80751304 CAAAATTACCAAAATACTCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
80751330 GTAAAATTACCAAAATACCCTAG-TCTG
1 -TAAAATTACCAAAATACCCTCGATTTA
*** * *
80751357 TAAAATTGTTAAAATACCACTAG-TTTG
1 TAAAATTACCAAAATACC-CTCGATTTA
* *
80751384 TAAAATTACCAAAATACCACTAG-TTTG
1 TAAAATTACCAAAATACC-CTCGATTTA
* * * *
80751411 TGAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
80751438 TAAAATTACCAAAATACCC-CTGATTTA
1 TAAAATTACCAAAATACCCTC-GATTTA
* * *
80751465 CAAAGTTACAAAAATACCCT
1 TAAAATTACCAAAATACCCT
80751485 TGACTTTCTA
Statistics
Matches: 263, Mismatches: 45, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
26 44 0.17
27 219 0.83
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:80751272 original size:53 final size:54
Alignment explanation
Indices: 80751157--80751287 Score: 192
Period size: 53 Copynumber: 2.4 Consensus size: 54
80751147 ATTACCAAAG
** * *
80751157 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* *
80751211 TACCCTCGATTTATAGAATTACTATTTTACCCT-TATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
*
80751264 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTATAAAATTACTA
80751288 AAATACCCTT
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
53 39 0.57
54 30 0.43
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
Found at i:80751295 original size:53 final size:54
Alignment explanation
Indices: 80751157--80751312 Score: 161
Period size: 53 Copynumber: 2.9 Consensus size: 54
80751147 ATTACCAAAG
* ***** * * *
80751157 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACTATTT
* * ***
80751211 TACCCTCGATTTATAGAATTACTATTTTACCCTT-ATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACTATTT
* *
80751264 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTAC
80751313 CAAAATACTC
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 46 0.52
54 42 0.48
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACTATTT
Found at i:80751546 original size:27 final size:27
Alignment explanation
Indices: 80751495--80751546 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
80751485 TGACTTTCTA
*
80751495 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTAGTTTAC
*
80751522 AAAATTACT-GAAATACCTTTAGTTT
1 AAAATTA-TGGAAATACCATTAGTTT
80751547 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTAGTTTAC
Found at i:80751628 original size:27 final size:27
Alignment explanation
Indices: 80751609--80751692 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
80751599 AGGTAAAAAA
80751609 GACCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCCTTGTAGGGTAAAGT
* *
80751636 GATCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCTTGTAGGGTAAAGT
* *
80751663 GACCGTAATA-CCCTTGTATGGTAAAAT
1 GACCGTAA-AGCCCTTGTAGGGTAAAGT
80751690 GAC
1 GAC
80751693 GAATATGCCC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (27 bp):
GACCGTAAAGCCCTTGTAGGGTAAAGT
Found at i:80751703 original size:27 final size:28
Alignment explanation
Indices: 80751609--80751704 Score: 112
Period size: 27 Copynumber: 3.6 Consensus size: 28
80751599 AGGTAAAAAA
80751609 GACCGTAA-AGCCCTTGTAGGGTAAAGT
1 GACCGTAATAGCCCTTGTAGGGTAAAGT
* *
80751636 GATCGTAA-AGCCCCTGTAGGGTAAAGT
1 GACCGTAATAGCCCTTGTAGGGTAAAGT
* *
80751663 GACCGTAATA-CCCTTGTATGGTAAAAT
1 GACCGTAATAGCCCTTGTAGGGTAAAGT
80751690 GA-CG-AATATGCCCTT
1 GACCGTAATA-GCCCTT
80751705 ATGTTCCGTA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
25 4 0.07
26 2 0.03
27 53 0.88
28 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (28 bp):
GACCGTAATAGCCCTTGTAGGGTAAAGT
Found at i:80752524 original size:26 final size:26
Alignment explanation
Indices: 80752495--80752669 Score: 248
Period size: 26 Copynumber: 6.8 Consensus size: 26
80752485 GAGGAAGTGC
* *
80752495 AAAAGGGCTTATGCCCCATTTTTTTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
80752521 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
80752547 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
80752573 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
80752599 -AAAGAGGCTTATGCCCCAGTTTATTG
1 AAAAG-GGCTTATGCCCCAGTTTATTG
**
80752625 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
80752650 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
80752670 ATTAAAGAGG
Statistics
Matches: 136, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
25 36 0.26
26 96 0.71
27 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:80752879 original size:42 final size:42
Alignment explanation
Indices: 80752814--80752905 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
80752804 TAGTCTCCCC
* * ** *
80752814 AAATAGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80752856 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80752898 AAATGGGC
1 AAATGGGC
80752906 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:80752964 original size:31 final size:31
Alignment explanation
Indices: 80752929--80753002 Score: 139
Period size: 31 Copynumber: 2.4 Consensus size: 31
80752919 CGTTTACAGT
80752929 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
80752960 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
80752991 AAAGGCTTCGGC
1 AAAGGCTTCGGC
80753003 GCAGTAACCG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:80760134 original size:9 final size:9
Alignment explanation
Indices: 80760122--80760178 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
80760112 TTTGATAAAC
80760122 ATGATATGT
1 ATGATATGT
*
80760131 ATGATATGCAC
1 ATGATATG--T
*
80760142 ATGACATGT
1 ATGATATGT
*
80760151 ATGATATGCAC
1 ATGATATG--T
80760162 ATGATATGT
1 ATGATATGT
80760171 ATGATATG
1 ATGATATG
80760179 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:80760145 original size:20 final size:20
Alignment explanation
Indices: 80760120--80760182 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
80760110 ATTTTGATAA
80760120 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
80760140 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
80760160 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
80760180 ACA
1 ACA
80760183 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:80760263 original size:24 final size:24
Alignment explanation
Indices: 80760236--80760427 Score: 291
Period size: 24 Copynumber: 8.0 Consensus size: 24
80760226 GAGGAAGTGC
80760236 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
80760260 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
80760284 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
80760308 AAAATGGCTTATGCCTCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
80760332 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
80760355 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
80760379 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
80760404 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
80760428 ATGATAAAGC
Statistics
Matches: 155, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
23 29 0.19
24 95 0.61
25 21 0.14
26 10 0.06
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:80760655 original size:31 final size:31
Alignment explanation
Indices: 80760620--80760683 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
80760610 CGTTTACAGT
80760620 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
80760651 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80760682 AA
1 AA
80760684 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:80767740 original size:49 final size:49
Alignment explanation
Indices: 80767681--80767855 Score: 158
Period size: 49 Copynumber: 3.6 Consensus size: 49
80767671 TGTTGTGTGT
* *
80767681 CAGTGTAAGACCTGTCTGGGACATGGCATTGACATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATTGACATCGATAGATGAAAGC
* * * * * **
80767730 CAGTGTAAGACCTGTTTGGGACATGGC-TTGGGCCTCGATATATGAAATT
1 CAGTGTAAGACCTGTCTAGGACATGGCATT-GACATCGATAGATGAAAGC
* * * * * **
80767779 TAGTGTAAGACCTGTCTAGGAAATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATTGACATCGATAGATGAAAGC
*
80767826 CAGTGTAAGACCATTTCTAGGACATGGCAT
1 CAGTGTAAGACC-TGTCTAGGACATGGCAT
80767856 CGACGTCTTA
Statistics
Matches: 100, Mismatches: 23, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 14 0.14
48 17 0.17
49 68 0.68
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATTGACATCGATAGATGAAAGC
Found at i:80771199 original size:46 final size:45
Alignment explanation
Indices: 80771149--80771324 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
80771139 TGGTTGAGCA
*
80771149 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* **** * * *
80771195 TCCGAACTCGTTGAGTTGCGTCCGAGTTCGGGAGATGTAACTGGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAAG
80771242 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
80771288 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80771325 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 64 0.61
47 31 0.30
48 1 0.01
49 4 0.04
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:80771258 original size:93 final size:93
Alignment explanation
Indices: 80771146--80771317 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
80771136 GGATGGTTGA
* * *
80771146 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
80771211 TGCGTCCGAGTTCGGGAGATGTAACTGG
66 TGAGTCCGAGTTCGGGAGATGTAACTGG
*
80771239 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80771304 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80771318 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGGGAGATGTAACTGG
Found at i:80778776 original size:46 final size:46
Alignment explanation
Indices: 80778726--80778901 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
80778716 TGGTTGAGCA
80778726 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** *
80778772 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GGGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80778817 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80778865 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80778902 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 61 0.56
47 29 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80778882 original size:93 final size:93
Alignment explanation
Indices: 80778723--80778894 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
80778713 GGATGGTTGA
*
80778723 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
80778788 TGAGTCCGAGTTCGGGAGATGTAACTAG
66 TGAGTCCGAGTTCGGGAGATGTAACTAG
*
80778816 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
80778880 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
80778895 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGGGAGATGTAACTAG
Found at i:80781809 original size:21 final size:21
Alignment explanation
Indices: 80781783--80781831 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
80781773 ACGGAGTTAA
80781783 AAGAGTTGAAACTCCAGCTAC
1 AAGAGTTGAAACTCCAGCTAC
80781804 AAGAGTTGAAACTCCAGCTAC
1 AAGAGTTGAAACTCCAGCTAC
80781825 AAGAGTT
1 AAGAGTT
80781832 AACAGATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (21 bp):
AAGAGTTGAAACTCCAGCTAC
Found at i:80785798 original size:48 final size:48
Alignment explanation
Indices: 80785726--80786035 Score: 194
Period size: 48 Copynumber: 6.5 Consensus size: 48
80785716 CGTGTGCCAA
* * *
80785726 TGTAAGACATGTCAGGGACATGCATCGACCTCAAGATATACCAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAAGCTAG
* * * * * * *
80785774 CGTAAGACATGTCTGGGACATGCATTGGCTTTGAGAT-GA-GAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAAGCTAG
*
80785820 TGTAAGACATGTCTGGGACATACATC-AGCCTCGAGATATACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGA-CCTCGAGATATACAAGCTAG
* * *
80785868 TGTAAGACCA-GTCTGGGACATGGCATCGACAC-C-A-ATAGATGAGAGCCAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGAC-CTCGAGATATA-CA-AGCTAG
* * * * * *
80785917 TGTAAGACCTATCTGGGACACGACATCAACCTCGATATATGA-AAG-TCAA
1 TGTAAGACATGTCTGGGACATG-CATCGACCTCGAGATAT-ACAAGCT-AG
** * * * *
80785966 TGTAAGATC-TGTCTGGGACATGGCATCGA-CT-TTGATGTGCTAGCCAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATATACAAGCTAG
80786013 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
80786036 GCGTTGGCAT
Statistics
Matches: 201, Mismatches: 40, Indels: 43
0.71 0.14 0.15
Matches are distributed among these distances:
46 36 0.18
47 21 0.10
48 73 0.36
49 61 0.30
50 6 0.03
51 3 0.01
52 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (48 bp):
TGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAAGCTAG
Found at i:80785887 original size:94 final size:94
Alignment explanation
Indices: 80785721--80786034 Score: 298
Period size: 94 Copynumber: 3.3 Consensus size: 94
80785711 TGATACGTGT
* * * * * *
80785721 GCCAATGTAAGACATGTCAGGGACATGCATC-GACCTCAAGATATACCAGCTAGCGTAAGACATG
1 GCCAGTGTAAGACATGTCTGGGACATACATCAG-CCTCGAGATATACAAGCTAGTGTAAGACA-G
* *
80785785 TCTGGGACAT-GCATTGGCTTTGAGATGAGA
64 TCTGGGACATGGCATCGACTTTGAGATGAGA
*
80785815 GCTAGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGATATACAAGCTAGTGTAAGACCAGT
1 GCCAGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGATATACAAGCTAGTGTAAGA-CAGT
**
80785880 CTGGGACATGGCATCGACACCAAT-AGATGAGA
65 CTGGGACATGGCATCG--A-CTTTGAGATGAGA
* * * * * *
80785912 GCCAGTGTAAGACCTATCTGGGACACGACATCAACCTCGATATATGA-AAG-TCAATGTAAGATC
1 GCCAGTGTAAGACATGTCTGGGACA-TACATCAGCCTCGAGATAT-ACAAGCT-AGTGTAAGA-C
* **
80785975 TGTCTGGGACATGGCATCGACTTTGATG-TGCTA
62 AGTCTGGGACATGGCATCGACTTTGA-GATGAGA
80786008 GCCAGTGTAAGACCATGTCTGGGACAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT
80786035 GGCGTTGGCA
Statistics
Matches: 181, Mismatches: 27, Indels: 22
0.79 0.12 0.10
Matches are distributed among these distances:
94 62 0.34
95 10 0.06
96 17 0.09
97 43 0.24
98 48 0.27
99 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (94 bp):
GCCAGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGATATACAAGCTAGTGTAAGACAGTC
TGGGACATGGCATCGACTTTGAGATGAGA
Found at i:80785925 original size:49 final size:48
Alignment explanation
Indices: 80785861--80786037 Score: 153
Period size: 49 Copynumber: 3.6 Consensus size: 48
80785851 CGAGATATAC
* *
80785861 AAGCTAGTGTAAGACCAGTCTGGGACATGGCATCGACACCAATAGATGA
1 AAGCCAGTGTAAGACCAGTCTGGGACATGGCATCGAC-CCGATAGATGA
* * * * *
80785910 GAGCCAGTGTAAGACCTA-TCTGGGACACGACATCAACCTCGATATATGA
1 AAGCCAGTGTAAGACC-AGTCTGGGACATGGCATCGACC-CGATAGATGA
* * * * ** *
80785959 AAGTCAATGTAAGATCTGTCTGGGACATGGCATCGACTTTGAT-G-TGC
1 AAGCCAGTGTAAGACCAGTCTGGGACATGGCATCGAC-CCGATAGATGA
*
80786006 TAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 AAGCCAGTGTAAGACCA-GTCTGGGACATGGC
80786038 GTTGGCATCT
Statistics
Matches: 99, Mismatches: 24, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
47 14 0.14
48 15 0.15
49 69 0.70
50 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
AAGCCAGTGTAAGACCAGTCTGGGACATGGCATCGACCCGATAGATGA
Found at i:80785985 original size:98 final size:97
Alignment explanation
Indices: 80785807--80785995 Score: 256
Period size: 98 Copynumber: 1.9 Consensus size: 97
80785797 ATTGGCTTTG
* * * * *
80785807 AGATGAGAGCTAGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGATATACAAGCTAGTGTA
1 AGATGAGAGCCAGTGTAAGACATATCTGGGACAGACATCAACCTCGAGATATACAAGCTAATGTA
80785872 AGACCAGTCTGGGACATGGCATCGACACCAAT
66 AGACCAGTCTGGGACATGGCATCGACACCAAT
* *
80785904 AGATGAGAGCCAGTGTAAGACCTATCTGGGACACGACATCAACCTCGATATATGA-AAG-TCAAT
1 AGATGAGAGCCAGTGTAAGACATATCTGGGACA-GACATCAACCTCGAGATAT-ACAAGCT-AAT
* *
80785967 GTAAGATCTGTCTGGGACATGGCATCGAC
63 GTAAGACCAGTCTGGGACATGGCATCGAC
80785996 TTTGATGTGC
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
97 31 0.39
98 48 0.60
99 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (97 bp):
AGATGAGAGCCAGTGTAAGACATATCTGGGACAGACATCAACCTCGAGATATACAAGCTAATGTA
AGACCAGTCTGGGACATGGCATCGACACCAAT
Found at i:80786036 original size:48 final size:48
Alignment explanation
Indices: 80785775--80786037 Score: 150
Period size: 49 Copynumber: 5.5 Consensus size: 48
80785765 ACCAGCTAGC
* * * * *
80785775 GTAAGA-CATGTCTGGGACAT-GCATTGGCTTTGA-GATGAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGACTTCGATG-TGAAAGCCAGT
* * * *
80785821 GTAAGA-CATGTCTGGGACAT-ACATC-AGCCTCGA-GATATACAAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGA-CTTCGATG-T-GA-AAGCCAGT
** * *
80785869 GTAAGACCA-GTCTGGGACATGGCATCGACACCAATAGATGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGACTTCGAT-G-TGAAAGCCAGT
* * * * * * * *
80785918 GTAAGACC-TATCTGGGACACGACATCAACCTCGATATATGAAAGTCAAT
1 GTAAGACCATGTCTGGGACATGGCATCGACTTCG--ATGTGAAAGCCAGT
* * **
80785967 GTAAGATC-TGTCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGACTTCGATGTGAAAGCCAGT
80786014 GTAAGACCATGTCTGGGACATGGC
1 GTAAGACCATGTCTGGGACATGGC
80786038 GTTGGCATCT
Statistics
Matches: 167, Mismatches: 38, Indels: 22
0.74 0.17 0.10
Matches are distributed among these distances:
46 30 0.18
47 17 0.10
48 39 0.23
49 74 0.44
50 2 0.01
51 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCGACTTCGATGTGAAAGCCAGT
Found at i:80787006 original size:18 final size:18
Alignment explanation
Indices: 80786926--80787007 Score: 101
Period size: 18 Copynumber: 4.6 Consensus size: 18
80786916 CAAGGTCACG
* * *
80786926 ATCAATAGCGTCACCATC
1 ATCAATATCGTCACTAGC
*
80786944 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTAGC
80786962 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTAGC
* *
80786980 ATTAATATCGTCACTATC
1 ATCAATATCGTCACTAGC
*
80786998 ATCATTATCG
1 ATCAATATCG
80787008 ATATCATCAA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTAGC
Found at i:80788278 original size:27 final size:27
Alignment explanation
Indices: 80788250--80788338 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
80788240 CAAAACAGTC
* *
80788250 ATTTTACCCTACAAGGGTATGTCGATC
1 ATTTTACACTACAAGGGTATGTCGATA
80788277 ATTTTACACTACAAGGGTA-GTTCGATA
1 ATTTTACACTACAAGGGTATG-TCGATA
*
80788304 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATGTCGATA
80788331 ATTTTACA
1 ATTTTACA
80788339 AATTGAAGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATGTCGATA
Found at i:80788360 original size:54 final size:54
Alignment explanation
Indices: 80788302--80788582 Score: 327
Period size: 54 Copynumber: 5.2 Consensus size: 54
80788292 GGTAGTTCGA
* * *
80788302 TAATTTTAC-ACTACAAGGGTATTTCGATAATTTTACAAATTGAAGGTGTTTCAG
1 TAATTTTACAAAT-CAAGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAG
* * *
80788356 TAATTTTACAAATCGAGGGTATTTCGATAATTGTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAG
* * * * * *
80788410 TAAGTTTACAAATCGAGGGTGTTTCGGTAATTTCACAAATTGAGGGTATTTCGG
1 TAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAG
* * * *
80788464 TAATTTTACAAATTAAGGGTATTTC-AGTAATTTCAC-AATCGAGGGTATTTCAA
1 TAATTTTACAAATCAAGGGTATTTCGA-TAATTTTACAAATTGAGGGTATTTCAG
* * * *
80788517 TAATTTTACAAATCAAGGGCATTT-TAGTAATTTTGCAAATTGAGGGTATTTCGG
1 TAATTTTACAAATCAAGGGTATTTCGA-TAATTTTACAAATTGAGGGTATTTCAG
80788571 TAATTTTACAAA
1 TAATTTTACAAA
80788583 CTAGGGGTAC
Statistics
Matches: 195, Mismatches: 28, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
53 45 0.23
54 148 0.76
55 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (54 bp):
TAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAG
Found at i:80788375 original size:81 final size:81
Alignment explanation
Indices: 80788290--80788582 Score: 333
Period size: 81 Copynumber: 3.6 Consensus size: 81
80788280 TTACACTACA
* * * *
80788290 AGGGTAGTTCGATAATTTTAC-ACTACAAGGGTATTTC-GATAATTTTACAAATTGAAGGTGTTT
1 AGGGTATTTCGATAATTTTACAAAT-CAAGGGTATTTCAG-TAATTTTACAAATCGAGGGTGTTT
80788353 CAGTAATTTTACAAATCG
64 CAGTAATTTTACAAATCG
* * * *
80788371 AGGGTATTTCGATAATTGTACAAATCGAGGGTATTTCAGTAAGTTTACAAATCGAGGGTGTTTCG
1 AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCA
* *
80788436 GTAATTTCACAAATTG
66 GTAATTTTACAAATCG
* * * *
80788452 AGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTCA
1 AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCA
* *
80788516 ATAATTTTACAAATCA
66 GTAATTTTACAAATCG
* * * ** *
80788532 AGGGCATTT-TAGTAATTTTGCAAATTGAGGGTATTTCGGTAATTTTACAAA
1 AGGGTATTTCGA-TAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAA
80788583 CTAGGGGTAC
Statistics
Matches: 179, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
80 66 0.37
81 110 0.61
82 3 0.02
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.37
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCA
GTAATTTTACAAATCG
Found at i:80788590 original size:27 final size:27
Alignment explanation
Indices: 80788290--80788601 Score: 283
Period size: 27 Copynumber: 11.6 Consensus size: 27
80788280 TTACACTACA
* * * *
80788290 AGGGTAGTTCGATAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAATA-G
* *
80788317 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATAG
* * * *
80788344 AAGGTGTTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATAG
* * *
80788371 AGGGTATTTCGATAATTGTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATAG
* * *
80788398 AGGGTATTTCAGTAAGTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATAG
* * *
80788425 AGGGTGTTTCGGTAATTTCACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATAG
80788452 AGGGTATTTCGGTAATTTTACAAATTA-
1 AGGGTATTTCGGTAATTTTACAAA-TAG
* * *
80788479 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATAG
**
80788505 AGGGTATTTCAATAATTTTACAAATCA-
1 AGGGTATTTCGGTAATTTTACAAAT-AG
* ** * *
80788532 AGGGCATTTTAGTAATTTTGCAAATTG
1 AGGGTATTTCGGTAATTTTACAAATAG
80788559 AGGGTATTTCGGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTTTACAAA-TAG
*
80788587 -GGGTACTTCGGTAAT
1 AGGGTATTTCGGTAAT
80788602 GTCTCTTTAT
Statistics
Matches: 235, Mismatches: 43, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
25 1 0.00
26 21 0.09
27 208 0.89
28 5 0.02
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATAG
Found at i:80788953 original size:28 final size:28
Alignment explanation
Indices: 80788921--80788984 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
80788911 TGGCCCCTTT
* *
80788921 AGGCCCAATCTCGTTCACATGACCCATC
1 AGGCCCAATCACATTCACATGACCCATC
* * *
80788949 AGGCCTAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGACCCATC
80788977 AGGCCCAA
1 AGGCCCAA
80788985 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.36, G:0.16, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGACCCATC
Found at i:80791958 original size:40 final size:40
Alignment explanation
Indices: 80791903--80792124 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
80791893 TATTCGAATG
* *
80791903 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
80791943 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
80791983 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
80792023 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
80792063 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
80792103 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80792125 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:80797460 original size:27 final size:27
Alignment explanation
Indices: 80797420--80797510 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 27
80797410 GGCAAAATAG
* *
80797420 TCATTTTACCCTACAGGGGTA-TGTCGA
1 TCATTTTACACTACAAGGGTAGT-TCGA
*
80797447 TCATTTTACACTACAAGGGTAGTTCGG
1 TCATTTTACACTACAAGGGTAGTTCGA
* ** * *
80797474 TAATTTTACACTGTAAGGGTATTTTGA
1 TCATTTTACACTACAAGGGTAGTTCGA
*
80797501 TAATTTTACA
1 TCATTTTACA
80797511 AATTGGGGGT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
TCATTTTACACTACAAGGGTAGTTCGA
Found at i:80797520 original size:27 final size:27
Alignment explanation
Indices: 80797489--80797810 Score: 260
Period size: 27 Copynumber: 12.0 Consensus size: 27
80797479 TTACACTGTA
* *
80797489 AGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * * *
80797516 GGGGTGTTT-TAGTAATTTTAAAAAGCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
80797543 AGGCTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
80797570 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
80797597 AAGGTGTTTCGATAAGTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
80797624 AGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
80797651 AGGGTGTTTC-AGTAATTTCACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
80797678 ATGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
80797705 ACGGTATTTCAATAAATTAAC-AATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
80797731 AGGGTATTTTGGTAATTTTACAAATCC
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
80797758 AAGGCATTTC-AGTAATTTTGCAAA-CTG
1 AGGGTATTTCGA-TAATTTTACAAATC-G
80797785 AGGGTATTTC-AGTAATTTTACAAATC
1 AGGGTATTTCGA-TAATTTTACAAATC
80797811 ATGGGTACTT
Statistics
Matches: 232, Mismatches: 55, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
26 21 0.09
27 210 0.91
28 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:80797808 original size:54 final size:53
Alignment explanation
Indices: 80797462--80797810 Score: 287
Period size: 54 Copynumber: 6.5 Consensus size: 53
80797452 TTACACTACA
* * *
80797462 AGGGTAGTTCGGTAATTTTAC-ACT-GTAAGGGTATTT-TGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG-AA-GGTATTTCAG-TAATTTTACAAA-TG
* * ** * * *
80797516 GGGGTGTTTTAGTAATTTTAAAAAGC-AAGGCTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAAGG-TATTTCAGTAATTTTACAAAT-G
* * *
80797570 AGGGTATTTCGATAATTTTACAAATCGAAGGTGTTTC-GATAAGTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAG-TAATTTTACAAA-TG
* * * * * *
80797624 AGGGTGTTTCGGTAATTTTACAAATTGAGGGTGTTTCAGTAATTTCACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAAAT-G
* * * * * *
80797678 ATGGTATTTCGGTAATTTTACAAATCGACGGTATTTCAATAAATTAAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAAAT-G
* * * *
80797731 AGGGTATTTTGGTAATTTTACAAATCCAAGGCATTTCAGTAATTTTGCAAACTG
1 AGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAAA-TG
*
80797785 AGGGTATTTCAGTAATTTTACAAATC
1 AGGGTATTTCGGTAATTTTACAAATC
80797811 ATGGGTACTT
Statistics
Matches: 238, Mismatches: 45, Indels: 24
0.78 0.15 0.08
Matches are distributed among these distances:
53 49 0.21
54 180 0.76
55 9 0.04
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAAATG
Found at i:80797826 original size:27 final size:26
Alignment explanation
Indices: 80797462--80797829 Score: 254
Period size: 27 Copynumber: 13.7 Consensus size: 26
80797452 TTACACTACA
* ** *
80797462 AGGGTAGTTCGGTAATTTTACACTGTA
1 AGGGTATTTCGGTAATTTTACA-AATC
* * *
80797489 AGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAA-TC
* * ** * *
80797516 GGGGTGTTTTAGTAATTTTAAAAAGC
1 AGGGTATTTCGGTAATTTTACAAATC
*
80797542 AAGGCTATTTCGGTAATTTTACAAATC
1 -AGGGTATTTCGGTAATTTTACAAATC
*
80797569 GAGGGTATTTCGATAATTTTACAAATC
1 -AGGGTATTTCGGTAATTTTACAAATC
* * * * *
80797596 GAAGGTGTTTCGATAAGTTTACAAATTG
1 -AGGGTATTTCGGTAATTTTACAAA-TC
* *
80797624 AGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAA-TC
* * *
80797651 AGGGTGTTTCAGTAATTTCACAAATC
1 AGGGTATTTCGGTAATTTTACAAATC
*
80797677 AATGGTATTTCGGTAATTTTACAAATC
1 -AGGGTATTTCGGTAATTTTACAAATC
* ** * *
80797704 GACGGTATTTCAATAAATTAAC-AATC
1 -AGGGTATTTCGGTAATTTTACAAATC
*
80797730 AAGGGTATTTTGGTAATTTTACAAATCC
1 -AGGGTATTTCGGTAATTTTACAAAT-C
* * * * *
80797758 AAGGCATTTCAGTAATTTTGCAAACTG
1 AGGGTATTTCGGTAATTTTACAAA-TC
*
80797785 AGGGTATTTCAGTAATTTTACAAATC
1 AGGGTATTTCGGTAATTTTACAAATC
80797811 ATGGGTACTTT-GGTAATTT
1 A-GGGTA-TTTCGGTAATTT
80797830 CTCTTTATTA
Statistics
Matches: 271, Mismatches: 61, Indels: 18
0.77 0.17 0.05
Matches are distributed among these distances:
26 22 0.08
27 243 0.90
28 6 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATC
Found at i:80798188 original size:28 final size:28
Alignment explanation
Indices: 80798146--80798237 Score: 141
Period size: 28 Copynumber: 3.3 Consensus size: 28
80798136 TGGCCCCTTT
*
80798146 AGGCCCAAT-ATCATTCACATGGCCCATC
1 AGGCCCAATCA-CATTCATATGGCCCATC
*
80798174 AGGCCTAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
80798202 AAGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
80798230 AGGCCCAA
1 AGGCCCAA
80798238 CTGCTTCCCA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 57 0.98
29 1 0.02
ACGTcount: A:0.30, C:0.35, G:0.14, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:80802897 original size:30 final size:30
Alignment explanation
Indices: 80802861--80802929 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
80802851 CCATGTGCCA
80802861 GCCCGTGTGCCTCAAAAGGCCAATAGACAC
1 GCCCGTGTGCCTCAAAAGGCCAATAGACAC
* * * * *
80802891 GCCCGTGTGCCTTACACGGCTAGTAGACAC
1 GCCCGTGTGCCTCAAAAGGCCAATAGACAC
80802921 GCCCGTGTG
1 GCCCGTGTG
80802930 TCTAGGCCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (30 bp):
GCCCGTGTGCCTCAAAAGGCCAATAGACAC
Found at i:80804121 original size:43 final size:42
Alignment explanation
Indices: 80804074--80804252 Score: 153
Period size: 43 Copynumber: 4.2 Consensus size: 42
80804064 CCAGATAAGT
* * *
80804074 TCTTAGACGAAATCGATTAACGATGCCATTGTCTCAGACATGG
1 TCTTACACGAAATC-ATTAACGATGCCAATGTCCCAGACATGG
* ** * * * * **
80804117 TCTTACACGTAATCACAATACAATACCAATGCCCCAAACAAAG
1 TCTTACACGAAATCATTA-ACGATGCCAATGTCCCAGACATGG
*
80804160 TCTTACATGAAATCAATTAACGATGCCAATGTCCCAGACATGG
1 TCTTACACGAAATC-ATTAACGATGCCAATGTCCCAGACATGG
* ** *
80804203 TCTTACACGTAATCACAATACAATGCCAATG-CCCTAGACATGG
1 TCTTACACGAAATCATTA-ACGATGCCAATGTCCC-AGACATGG
80804246 TCTTACA
1 TCTTACA
80804253 TGTAATCACA
Statistics
Matches: 105, Mismatches: 27, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
42 7 0.07
43 96 0.91
44 2 0.02
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.25
Consensus pattern (42 bp):
TCTTACACGAAATCATTAACGATGCCAATGTCCCAGACATGG
Found at i:80804249 original size:86 final size:86
Alignment explanation
Indices: 80804012--80804260 Score: 297
Period size: 86 Copynumber: 2.9 Consensus size: 86
80804002 AGCTTGCACA
* * * * * * * *
80804012 ATGCC-ATATCCCAGATATGGTC-TACATGTTATCTC-ATATCAATGCCACTGCCCCAGATAAGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA-CAATGCCAATGCCCCAGACAAGG
* * *
80804074 TCTTAGACGAAATCGATTAACG
65 TCTTACATGAAATCAATTAACG
* * * * *
80804096 ATGCCATTGTCTCAGACATGGTCTTACACGTAATCACAATACAATACCAATGCCCCAAACAAAGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATGCCCCAGACAAGGT
80804161 CTTACATGAAATCAATTAACG
66 CTTACATGAAATCAATTAACG
* *
80804182 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATGCCCTAGACATGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATGCCCCAGACAAGGT
*
80804247 CTTACATGTAATCA
66 CTTACATGAAATCA
80804261 CATCTCGGTA
Statistics
Matches: 138, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
84 5 0.04
85 13 0.09
86 117 0.85
87 3 0.02
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (86 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATGCCCCAGACAAGGT
CTTACATGAAATCAATTAACG
Found at i:80804258 original size:43 final size:42
Alignment explanation
Indices: 80804108--80804262 Score: 186
Period size: 43 Copynumber: 3.6 Consensus size: 42
80804098 GCCATTGTCT
*
80804108 CAGACATGGTCTTACACGTAATCACAATACAATACCAATGCCC
1 CAGACATGGTCTTACACGTAATCACAATACAATGCCAATG-CC
* ** * * * *
80804151 CAAACAAAGTCTTACATGAAATCA-ATTAACGATGCCAATGTCC
1 CAGACATGGTCTTACACGTAATCACAAT-ACAATGCCAATG-CC
80804194 CAGACATGGTCTTACACGTAATCACAATACAATGCCAATGCC
1 CAGACATGGTCTTACACGTAATCACAATACAATGCCAATGCC
*
80804236 CTAGACATGGTCTTACATGTAATCACA
1 C-AGACATGGTCTTACACGTAATCACA
80804263 TCTCGGTAAC
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 5 0.05
43 85 0.92
44 2 0.02
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.23
Consensus pattern (42 bp):
CAGACATGGTCTTACACGTAATCACAATACAATGCCAATGCC
Found at i:80805421 original size:6 final size:6
Alignment explanation
Indices: 80805410--80805542 Score: 114
Period size: 6 Copynumber: 21.8 Consensus size: 6
80805400 AACCAAAATG
*
80805410 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
80805458 AGTAA-C AGAATT AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
80805507 AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
80805543 GTGAATGCAA
Statistics
Matches: 103, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
5 7 0.07
6 86 0.83
7 7 0.07
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:80805425 original size:30 final size:30
Alignment explanation
Indices: 80805389--80805542 Score: 179
Period size: 30 Copynumber: 5.1 Consensus size: 30
80805379 AAGAAACATT
* *
80805389 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
80805419 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* *
80805449 ATCA-ATATTAGTAACAGAATTAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
80805479 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
80805510 ATCAGAATTACGTG-ACAGAATCAGAATCAGA
1 ATCAGAATTA-G-GAACAGAATCAGAATCAGA
80805541 AT
1 AT
80805543 GTGAATGCAA
Statistics
Matches: 109, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 57 0.52
31 49 0.45
32 1 0.01
33 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:80805505 original size:31 final size:30
Alignment explanation
Indices: 80805410--80805542 Score: 196
Period size: 31 Copynumber: 4.4 Consensus size: 30
80805400 AACCAAAATG
*
80805410 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
80805440 AGAATCAGAATCA-ATATTAGTAACAGAATT
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
80805470 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
80805501 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
80805532 AGAATCAGAAT
1 AGAATCAGAAT
80805543 GTGAATGCAA
Statistics
Matches: 95, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
29 1 0.01
30 43 0.45
31 51 0.54
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:80805697 original size:27 final size:26
Alignment explanation
Indices: 80805660--80805725 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
80805650 AGTATGGCTG
*
80805660 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
80805686 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
80805713 CCAGAATCAGATA
1 CCAGAA-CAGATA
80805726 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:80805730 original size:27 final size:27
Alignment explanation
Indices: 80805660--80805733 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
80805650 AGTATGGCTG
* *
80805660 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
80805686 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
80805713 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
80805734 AACCCCCTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:80805929 original size:22 final size:22
Alignment explanation
Indices: 80805897--80805954 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
80805887 TAAATACGTT
*
80805897 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
80805919 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
80805941 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
80805955 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:80806121 original size:27 final size:26
Alignment explanation
Indices: 80806042--80806124 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
80806032 TCGATCGGTC
* * *
80806042 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
80806068 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
80806095 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
80806122 AAC
1 AAC
80806125 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:80806373 original size:27 final size:27
Alignment explanation
Indices: 80806324--80806464 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
80806314 GGGCAAAATG
* * ** * *
80806324 GTAATTTTACCCCACAAAGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
80806351 GTAATTCTACCCTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
80806378 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
80806405 ATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
80806432 GAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
80806459 GTAATT
1 GTAATT
80806465 TCACAATCAA
Statistics
Matches: 96, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:80806499 original size:27 final size:27
Alignment explanation
Indices: 80806469--80806825 Score: 438
Period size: 27 Copynumber: 13.3 Consensus size: 27
80806459 GTAATTTCAC
*
80806469 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
80806496 AATCGAGGGTAAAACGATAATT-TGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
80806522 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
80806549 AATCAAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
80806576 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
80806603 AATCGAAGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
80806630 AA-CTGAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
80806657 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
80806684 AA-CTAAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
80806711 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
80806738 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
80806765 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
80806792 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
80806819 AATCGAG
1 AATCGAG
80806826 AGTACTTTGG
Statistics
Matches: 286, Mismatches: 35, Indels: 18
0.84 0.10 0.05
Matches are distributed among these distances:
25 1 0.00
26 24 0.08
27 257 0.90
28 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:80811671 original size:40 final size:40
Alignment explanation
Indices: 80811626--80811777 Score: 209
Period size: 40 Copynumber: 3.8 Consensus size: 40
80811616 ATAACCACAA
* * *
80811626 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGT-AACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-TCAACTC
80811666 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
80811706 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
80811746 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
80811778 CATTCAAATG
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.02
40 96 0.94
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:80811879 original size:33 final size:33
Alignment explanation
Indices: 80811842--80811908 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
80811832 TTTTCGTTAC
80811842 TAAGGCTCAAACACAAAACATTTATTAAACCTT
1 TAAGGCTCAAACACAAAACATTTATTAAACCTT
80811875 TAAGGCTCAAACACAAAACATTTATTAAACCTT
1 TAAGGCTCAAACACAAAACATTTATTAAACCTT
80811908 T
1 T
80811909 CCAATTTCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.28
Consensus pattern (33 bp):
TAAGGCTCAAACACAAAACATTTATTAAACCTT
Done.