Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 246 of 356
Found at i:80814529 original size:24 final size:24
Alignment explanation
Indices: 80814488--80814544 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
80814478 TCAAATAAGT
*
80814488 ATCCTATTAAAAGACTTCTCAAGC
1 ATCCTGTTAAAAGACTTCTCAAGC
* * *
80814512 ATCTTGTTAAAAGCCTTCTCGAGC
1 ATCCTGTTAAAAGACTTCTCAAGC
80814536 ATCCTGTTA
1 ATCCTGTTA
80814545 TATAGTTCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (24 bp):
ATCCTGTTAAAAGACTTCTCAAGC
Found at i:80814793 original size:24 final size:24
Alignment explanation
Indices: 80814761--80814835 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
80814751 TCTGGTGCTC
80814761 CCTGATAATAACTCTTATGAGTTT
1 CCTGATAATAACTCTTATGAGTTT
* * *
80814785 CCTGATAATAACTC-AATGAGCTC
1 CCTGATAATAACTCTTATGAGTTT
* *
80814808 CCCGATTAA-AACTCTTATGAGTAT
1 CCTGA-TAATAACTCTTATGAGTTT
80814832 CCTG
1 CCTG
80814836 TTTAGTCCGG
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
23 15 0.38
24 25 0.62
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (24 bp):
CCTGATAATAACTCTTATGAGTTT
Found at i:80818761 original size:27 final size:27
Alignment explanation
Indices: 80818728--80818878 Score: 230
Period size: 27 Copynumber: 5.6 Consensus size: 27
80818718 TAAATTGTGC
80818728 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
80818755 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
80818783 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
80818810 AGCACTAAGTGTGCGAGTTGAGTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
80818837 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
80818864 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80818879 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 90 0.78
28 26 0.22
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:80820506 original size:49 final size:48
Alignment explanation
Indices: 80820434--80820610 Score: 189
Period size: 49 Copynumber: 3.6 Consensus size: 48
80820424 TGACATGTGT
* *
80820434 CAGTGTAAGACCTTTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CAGATAGATGAGAGC
* * * * *
80820483 CAGTGTAAGACCTGTCTGGGACATGGAATCGGCCTTA-ATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACC--AGATAGATGAGAGC
* *
80820532 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT-G-TGTGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CAGATAGATGAGAGC
* *
80820579 CAGTGTAAGACCATGTTTGGAACATGGCATCG
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCG
80820611 GCATTGTACC
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
47 16 0.15
48 19 0.18
49 72 0.67
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCAGATAGATGAGAGC
Found at i:80833095 original size:33 final size:33
Alignment explanation
Indices: 80833039--80833102 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
80833029 GGTACATGCA
* *
80833039 GAATAGTCTAGGCCGTAGGCCTATTTAGTAACT
1 GAATAGTCTAGGCCGTAGCCCTATATAGTAACT
* **
80833072 GAATAGTCTGGGCTTTAGCCCTATATAGTAA
1 GAATAGTCTAGGCCGTAGCCCTATATAGTAA
80833103 TGGTGTGGGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (33 bp):
GAATAGTCTAGGCCGTAGCCCTATATAGTAACT
Found at i:80835395 original size:33 final size:34
Alignment explanation
Indices: 80835354--80835424 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
80835344 ATTTCAGTAG
* *
80835354 CAGT-TCAGTCTCAG-CTAGGCCTTAGTCCATTA
1 CAGTATCAGTATCAGTCTAGGCCTTAGCCCATTA
* * *
80835386 CAGTATCAGTATCAGTGTGGGCCTTAGCCCATTT
1 CAGTATCAGTATCAGTCTAGGCCTTAGCCCATTA
80835420 CAGTA
1 CAGTA
80835425 ACAATAACAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 4 0.12
33 9 0.28
34 19 0.59
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (34 bp):
CAGTATCAGTATCAGTCTAGGCCTTAGCCCATTA
Found at i:80839607 original size:46 final size:45
Alignment explanation
Indices: 80839453--80839620 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 45
80839443 ATTGTAGGCT
* * * **
80839453 AGTGTAAGACATGTCTGGGACATGTATCGGACAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAACAT-A-AGCC
* * * * *
80839499 AGTATAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGT--GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-AC-A-TAAGCC
80839547 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGAACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC-GAACATAAGCC
*
80839593 AGTGTAAGACATGTCTAGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
80839621 AGCTACAAAA
Statistics
Matches: 97, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 47 0.48
47 30 0.31
48 15 0.15
49 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAACATAAGCC
Found at i:80849318 original size:68 final size:66
Alignment explanation
Indices: 80849104--80849327 Score: 203
Period size: 64 Copynumber: 3.4 Consensus size: 66
80849094 ATATAGTTCG
* * * *
80849104 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCG
1 GCTCTCTTGTACTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATTCTTG
80849165 TA
65 TA
* * * * *
80849167 GCTCTCTTGT-CTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATA-TCC
1 GCTCTCTTGTACTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATTCT
80849230 TGTA
63 TGTA
* * *
80849234 GCTCTCTTG-CCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCT
1 GCTCTCTTGTACTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCT
80849298 TGTA
63 TGTA
* *
80849302 GCTCTCTTGTAC-ACATGATGTGCACT
1 GCTCTCTTGTACTACATGGTGTACACT
80849328 CAGCACTATA
Statistics
Matches: 129, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.14
64 28 0.22
65 2 0.02
66 24 0.19
67 27 0.21
68 28 0.22
69 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (66 bp):
GCTCTCTTGTACTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTTGT
A
Found at i:80852656 original size:16 final size:16
Alignment explanation
Indices: 80852635--80852675 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
80852625 ATCACACCAA
80852635 ATACACATACACTTAT
1 ATACACATACACTTAT
80852651 ATACACATACACTTAT
1 ATACACATACACTTAT
*
80852667 ATATACATA
1 ATACACATA
80852676 AATTCATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (16 bp):
ATACACATACACTTAT
Found at i:80853302 original size:43 final size:43
Alignment explanation
Indices: 80853221--80853306 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
80853211 AAATTGTACA
* **
80853221 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGTCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAACACATATCG
* *
80853264 ATGCCACTGTCCCAGGCATGGTCTTAC-TCGTAAACACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAT-GTAAACACATATCG
80853307 GAAGCACAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAACACATATCG
Found at i:80860408 original size:24 final size:25
Alignment explanation
Indices: 80860381--80860433 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 25
80860371 CGTGGTGTTC
80860381 ACCTATCCATCTATTCATCC-TTTT
1 ACCTATCCATCTATTCATCCTTTTT
80860405 ACCTATCCATCTATTCATCCTTTTT
1 ACCTATCCATCTATTCATCCTTTTT
80860430 ACCT
1 ACCT
80860434 TAACAATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 20 0.71
25 8 0.29
ACGTcount: A:0.21, C:0.34, G:0.00, T:0.45
Consensus pattern (25 bp):
ACCTATCCATCTATTCATCCTTTTT
Found at i:80867450 original size:41 final size:43
Alignment explanation
Indices: 80867361--80867485 Score: 121
Period size: 41 Copynumber: 2.9 Consensus size: 43
80867351 GTTCTAGACG
* * *
80867361 TGGTCTTACATGTAATCACATATCCATGCCACTGTCCTAGACA
1 TGGTCTTACATGTAATCAAATATCCATGCCACTGTCCCAGAAA
* * *
80867404 GGGTCTTACATG-AATCAAATA-CGATGTCGA-TGTCCCAGAAA
1 TGGTCTTACATGTAATCAAATATCCATG-CCACTGTCCCAGAAA
* * *
80867445 TGGTCTTACACGTAATCACATATATCGATGCCAATGTCCCA
1 TGGTCTTACATGTAATCA-A-ATATCCATGCCACTGTCCCA
80867486 AACGTGCCCT
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
41 23 0.34
42 15 0.22
43 12 0.18
44 5 0.07
45 12 0.18
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
TGGTCTTACATGTAATCAAATATCCATGCCACTGTCCCAGAAA
Found at i:80869000 original size:18 final size:20
Alignment explanation
Indices: 80868973--80869013 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
80868963 AATCTCAATC
80868973 TCTGACGGATTA-ATC-ATA
1 TCTGACGGATTAGATCGATA
*
80868991 TCTGAGGGATTAGATCGATA
1 TCTGACGGATTAGATCGATA
80869011 TCT
1 TCT
80869014 ACAAAGCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 3 0.15
20 6 0.30
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (20 bp):
TCTGACGGATTAGATCGATA
Found at i:80869857 original size:5 final size:5
Alignment explanation
Indices: 80869847--80869872 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
80869837 TTAGCCATAC
80869847 CTCTT CTCTT CTCTT CTCTT CTCTT C
1 CTCTT CTCTT CTCTT CTCTT CTCTT C
80869873 CCCTCCTTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (5 bp):
CTCTT
Found at i:80873419 original size:47 final size:47
Alignment explanation
Indices: 80873337--80873588 Score: 328
Period size: 47 Copynumber: 5.3 Consensus size: 47
80873327 TAATTGAATA
* *
80873337 AATGTGAA-AGTGTATATGTGTGAATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATGTGAG-ATAAGGCCGAATGGCCAATGTGATG
* *
80873385 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
80873432 AATGTGAACATGTGTATGTGTGATAAGGCCGAATTGCAAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* *
80873479 AAAGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * * *
80873526 AATGTGAGCATGTGTATGTCAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
80873573 AATGTGAA-AGTGTATA
1 AATGTGAACA-TGTATA
80873589 AATGTGATAA
Statistics
Matches: 179, Mismatches: 23, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
46 1 0.01
47 160 0.89
48 17 0.09
49 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
Found at i:80873787 original size:37 final size:37
Alignment explanation
Indices: 80873718--80873797 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 37
80873708 CCGGGCTCTA
* * * *
80873718 AAGACCCGATGACTGCGTGTGGGAATTTTGTCCAGGT
1 AAGACTCGATAACTACGTGTGGGAATTATGTCCAGGT
*
80873755 AAGACTCGATAACTACGTGT-GGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGGA-ATTATGTCCAGGT
*
80873792 GAGACT
1 AAGACT
80873798 TCGTAATAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
36 3 0.08
37 33 0.92
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGGAATTATGTCCAGGT
Found at i:80876150 original size:19 final size:19
Alignment explanation
Indices: 80876109--80876150 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
80876099 CAGCTCTACT
* *
80876109 GCAAATACTATTTAGTGCT
1 GCAAATACTATTTAGCGCC
80876128 GCAAATACTATTTAGCGCC
1 GCAAATACTATTTAGCGCC
80876147 GCAA
1 GCAA
80876151 CCAGTGCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (19 bp):
GCAAATACTATTTAGCGCC
Found at i:80876334 original size:34 final size:33
Alignment explanation
Indices: 80876282--80876353 Score: 81
Period size: 34 Copynumber: 2.2 Consensus size: 33
80876272 TGCTACTGTC
* * * *
80876282 ACTGAAATGGGCTCAGGCCCGCACTGATATTGG
1 ACTGTAATGGGCTAAGGCCCGAACTGAAATTGG
* *
80876315 TACTGTAATGGGTTAAGGCCCTAACTGAAATTGG
1 -ACTGTAATGGGCTAAGGCCCGAACTGAAATTGG
80876349 ACTGT
1 ACTGT
80876354 TACTGATTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 5 0.16
34 27 0.84
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (33 bp):
ACTGTAATGGGCTAAGGCCCGAACTGAAATTGG
Found at i:80881572 original size:79 final size:81
Alignment explanation
Indices: 80881463--80881645 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
80881453 TACTCGTTCA
* *
80881463 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
80881526 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
80881543 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
80881606 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
80881622 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
80881646 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:80881645 original size:40 final size:40
Alignment explanation
Indices: 80881442--80881645 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
80881432 CGGAATTTAA
** *
80881442 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80881482 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80881522 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80881561 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80881601 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80881641 CCGGA
1 CCGGA
80881646 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80889700 original size:78 final size:81
Alignment explanation
Indices: 80889533--80889716 Score: 218
Period size: 78 Copynumber: 2.3 Consensus size: 81
80889523 GCTACTCGTT
* *
80889533 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
80889597 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* **
80889614 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGC-CAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
80889675 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
80889692 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
80889717 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
77 3 0.03
78 38 0.43
79 35 0.39
80 10 0.11
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:80889716 original size:40 final size:40
Alignment explanation
Indices: 80889514--80889716 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
80889504 CGGAATTTAA
** *
80889514 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80889554 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80889594 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80889633 CCGGA-ATTAGTAACTCGC-CAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80889672 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80889712 CCGGA
1 CCGGA
80889717 CATCATTCGA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
37 2 0.01
38 10 0.07
39 37 0.27
40 83 0.60
41 7 0.05
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80894599 original size:40 final size:43
Alignment explanation
Indices: 80894493--80894646 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 43
80894483 ATATCAAACA
* * * * *
80894493 ATGCCAACGTCCCAGACAAGATCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATAG
* *
80894536 ATGCCATTGTCCCAGACAGGGTCTTACACG-AATCA-A-ATAG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATAG
* *
80894576 ATGTCAATGTCCCAGACATGGTCTTACAGGTAATCACATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATA--G
**
80894621 ATGCCAACATCCCAGACATGGTCTTA
1 ATGCCAATGTCCCAGACATGGTCTTA
80894647 TGCGAGAACA
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
40 29 0.31
41 6 0.06
42 6 0.06
43 28 0.30
45 24 0.26
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATAG
Found at i:80896664 original size:20 final size:18
Alignment explanation
Indices: 80896637--80896686 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
80896627 CAAAGACGCA
80896637 TAATAGAGGCACAGAGGTG
1 TAATAGAGGCACA-AGGTG
* *
80896656 TAGATAGAGACACAATGTG
1 TA-ATAGAGGCACAAGGTG
80896675 TAATCAGAGGCA
1 TAAT-AGAGGCA
80896687 TCGAAGTGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 2 0.08
19 14 0.54
20 10 0.38
ACGTcount: A:0.40, C:0.12, G:0.30, T:0.18
Consensus pattern (18 bp):
TAATAGAGGCACAAGGTG
Found at i:80908844 original size:16 final size:16
Alignment explanation
Indices: 80908823--80908854 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
80908813 GGAAGAATGG
80908823 AAATAAGTAATAGTGA
1 AAATAAGTAATAGTGA
80908839 AAATAAGTAATAGTGA
1 AAATAAGTAATAGTGA
80908855 GAGAAATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.25
Consensus pattern (16 bp):
AAATAAGTAATAGTGA
Found at i:80918884 original size:25 final size:25
Alignment explanation
Indices: 80918856--80918909 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
80918846 TTGTACATGT
*
80918856 ATGCTCACATGACCTGTAAATCGGC
1 ATGCTCACACGACCTGTAAATCGGC
* * *
80918881 ATGCTCCCACGAGCTGTAAATCGGT
1 ATGCTCACACGACCTGTAAATCGGC
80918906 ATGC
1 ATGC
80918910 ACTAACGAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (25 bp):
ATGCTCACACGACCTGTAAATCGGC
Found at i:80918917 original size:25 final size:25
Alignment explanation
Indices: 80918869--80918923 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
80918859 CTCACATGAC
* *
80918869 CTGTAAATCGGCATGCTCCCACGAG
1 CTGTAAATCGGCATGCACCAACGAG
* *
80918894 CTGTAAATCGGTATGCACTAACGAG
1 CTGTAAATCGGCATGCACCAACGAG
*
80918919 TTGTA
1 CTGTA
80918924 GGTCGGAACA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (25 bp):
CTGTAAATCGGCATGCACCAACGAG
Found at i:80928759 original size:11 final size:11
Alignment explanation
Indices: 80928743--80928768 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
80928733 ACCATGATAA
80928743 ATATCATTGGC
1 ATATCATTGGC
80928754 ATATCATTGGC
1 ATATCATTGGC
80928765 ATAT
1 ATAT
80928769 ATATATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (11 bp):
ATATCATTGGC
Found at i:80929196 original size:24 final size:24
Alignment explanation
Indices: 80929113--80929196 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
80929103 TCTTACTCAT
* *
80929113 TCGCACACATAGTGCCGCATTTCC
1 TCGCACACATAGTGCCACATATCC
* ** **
80929137 TCCCACACATAGTGCCATGTAGTTT
1 TCGCACACATAGTGCCACATA-TCC
* *
80929162 TTGCACACATAGTGCCACATAACC
1 TCGCACACATAGTGCCACATATCC
80929186 TCGCACACATA
1 TCGCACACATA
80929197 ATGCTGAAAT
Statistics
Matches: 44, Mismatches: 15, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
24 26 0.59
25 18 0.41
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.25
Consensus pattern (24 bp):
TCGCACACATAGTGCCACATATCC
Found at i:80934793 original size:24 final size:24
Alignment explanation
Indices: 80934740--80934822 Score: 105
Period size: 24 Copynumber: 3.4 Consensus size: 24
80934730 CAATAGTTCG
* *
80934740 TATGAGCTTACCGATATATCAGC-CC
1 TATGAGCTTACTG-T-TCTCAGCTCC
*
80934765 GTATGAGCTTACTGTTCTCAGGTCC
1 -TATGAGCTTACTGTTCTCAGCTCC
80934790 TATGAGCTTACTGTTCTCAGCTCC
1 TATGAGCTTACTGTTCTCAGCTCC
80934814 TATGAGCTT
1 TATGAGCTT
80934823 TCAAAATTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
24 37 0.71
25 3 0.06
26 12 0.23
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (24 bp):
TATGAGCTTACTGTTCTCAGCTCC
Found at i:80936515 original size:24 final size:24
Alignment explanation
Indices: 80936483--80936531 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
80936473 TCACACAGAG
80936483 TAAGCTTTCAAAAGCTTAGTAAGC
1 TAAGCTTTCAAAAGCTTAGTAAGC
80936507 TAAGCTTTCAAAAGCTTAGTAAGC
1 TAAGCTTTCAAAAGCTTAGTAAGC
80936531 T
1 T
80936532 CGTACTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (24 bp):
TAAGCTTTCAAAAGCTTAGTAAGC
Found at i:80936920 original size:30 final size:28
Alignment explanation
Indices: 80936872--80936928 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
80936862 GTAGCCGAAG
*
80936872 CTAGTTAAATCTACACTTAGTGCCAAAA
1 CTAGTTAAATCCACACTTAGTGCCAAAA
80936900 CTAGTTTAAATCGCACACTTAGTGCCAAA
1 CTAG-TTAAATC-CACACTTAGTGCCAAA
80936929 GCTTCCGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 4 0.15
29 7 0.27
30 15 0.58
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (28 bp):
CTAGTTAAATCCACACTTAGTGCCAAAA
Found at i:80944368 original size:96 final size:96
Alignment explanation
Indices: 80944251--80944442 Score: 384
Period size: 96 Copynumber: 2.0 Consensus size: 96
80944241 AATCACCACA
80944251 CTATCAAATAATCACAAAATGACATGTATAGCTAGACCCAAACGTATTACGGTAGTCCTAGAATC
1 CTATCAAATAATCACAAAATGACATGTATAGCTAGACCCAAACGTATTACGGTAGTCCTAGAATC
80944316 GACTAAACCGTAGCTCTGATACCAATAAAAT
66 GACTAAACCGTAGCTCTGATACCAATAAAAT
80944347 CTATCAAATAATCACAAAATGACATGTATAGCTAGACCCAAACGTATTACGGTAGTCCTAGAATC
1 CTATCAAATAATCACAAAATGACATGTATAGCTAGACCCAAACGTATTACGGTAGTCCTAGAATC
80944412 GACTAAACCGTAGCTCTGATACCAATAAAAT
66 GACTAAACCGTAGCTCTGATACCAATAAAAT
80944443 TGTAACACCC
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 96 1.00
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.24
Consensus pattern (96 bp):
CTATCAAATAATCACAAAATGACATGTATAGCTAGACCCAAACGTATTACGGTAGTCCTAGAATC
GACTAAACCGTAGCTCTGATACCAATAAAAT
Found at i:80950583 original size:25 final size:25
Alignment explanation
Indices: 80950553--80950630 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
80950543 TAGGATTTTA
80950553 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
80950578 TGTGAT-AAGGCCG-A-ATGAC-CA-A
1 TGTGATGAATG-TGAACATG-CGTATG
80950600 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
80950625 TGTGAT
1 TGTGAT
80950631 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 7 0.18
23 9 0.24
24 9 0.24
25 13 0.34
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:80950603 original size:47 final size:47
Alignment explanation
Indices: 80950552--80950840 Score: 416
Period size: 47 Copynumber: 6.1 Consensus size: 47
80950542 TTAGGATTTT
* *
80950552 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
80950599 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
80950646 ATGTGATGAATGTGAACCTATATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
*
80950697 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
80950744 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
80950791 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
80950838 ATG
1 ATG
80950841 CGAAATGTGT
Statistics
Matches: 222, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 178 0.80
48 1 0.00
50 1 0.00
51 42 0.19
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:80950698 original size:98 final size:96
Alignment explanation
Indices: 80950552--80950833 Score: 410
Period size: 98 Copynumber: 3.0 Consensus size: 96
80950542 TTAGGATTTT
* * *
80950552 ATGTGATGAATGTGAACATGC--GTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAACATACATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
80950615 CATGCGTATGTGTGATAAGGCCGAATGACCA
66 CATGCGTATGTGTGATAAGGCCGAATGACCA
*
80950646 ATGTGATGAATGTGAACCTATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C-ATACATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
80950711 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
64 AACATGCGTATGTGTGATAAGGCCGAATGACCA
* * *
80950744 ATGTGATGAATGTGAACATGCATATA--TGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAACATACATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
** * *
80950807 CATGTATATATGTGGTAAGGCCGAATG
66 CATGCGTATGTGTGATAAGGCCGAATG
80950834 GCTAATGCGA
Statistics
Matches: 171, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
94 74 0.43
95 1 0.01
96 9 0.05
97 1 0.01
98 86 0.50
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (96 bp):
ATGTGATGAATGTGAACATACATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
CATGCGTATGTGTGATAAGGCCGAATGACCA
Found at i:80950701 original size:24 final size:24
Alignment explanation
Indices: 80950673--80950748 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
80950663 CTATATATAT
80950673 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
80950697 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
80950720 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
80950744 ATGTG
1 ATGTG
80950749 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:80950709 original size:145 final size:141
Alignment explanation
Indices: 80950552--80950840 Score: 470
Period size: 145 Copynumber: 2.0 Consensus size: 141
80950542 TTAGGATTTT
80950552 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACA
* * * *
80950617 TGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACCTATATATATATGTGTGAT
66 TGCATATATGAGATAAGGCCAAATGACCAATGTGATGAATGTGAA-C-ATATATATATGTG-G-T
80950682 AAGGCCGAATGGCCA
127 AAGGCCGAATGGCCA
*
80950697 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACA
* *
80950762 TGCATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGTATATATGTGGTAAGG
66 TGCATATATGAGATAAGGCCAAATGACCAATGTGATGAATGTGAACATATATATATGTGGTAAGG
*
80950827 CCGAATGGCTA
131 CCGAATGGCCA
80950838 ATG
1 ATG
80950841 CGAAATGTGT
Statistics
Matches: 136, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
141 18 0.13
142 1 0.01
143 12 0.09
144 1 0.01
145 104 0.76
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACA
TGCATATATGAGATAAGGCCAAATGACCAATGTGATGAATGTGAACATATATATATGTGGTAAGG
CCGAATGGCCA
Found at i:80950950 original size:46 final size:46
Alignment explanation
Indices: 80950814--80950950 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
80950804 GAACATGTAT
* *
80950814 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
80950860 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
80950906 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
80950951 TGTACATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:80951202 original size:37 final size:37
Alignment explanation
Indices: 80951094--80951202 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
80951084 GGAAATATAT
*
80951094 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
80951131 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
80951168 TCCGGGTAAGACTCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
80951203 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:80958587 original size:40 final size:39
Alignment explanation
Indices: 80958535--80958652 Score: 125
Period size: 39 Copynumber: 3.0 Consensus size: 39
80958525 TCCAATTTCT
* *
80958535 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATAT-TAATACC
* * * *
80958575 AGCACTAGGCCTGC-GGACTATAAGTCTGGATA-TAATACC
1 AGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATTAATACC
*
80958614 AGCATTAAGCCTGCGGGATTTAACCCGGATA-TAATACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATTAATACC
80958652 A
1 A
80958653 CATAAATTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
38 14 0.22
39 25 0.39
40 19 0.30
41 6 0.09
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (39 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATTAATACC
Found at i:80963028 original size:28 final size:27
Alignment explanation
Indices: 80962996--80963079 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
80962986 AACTGTGATC
80962996 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTA-TAAGTGCAGGCTACT
* * *
80963024 ACGTGTATCAG-AT-GGT-TAGG-T-C-
1 ACGTGTGT-AGTATAAGTGCAGGCTACT
80963046 ACGTGTGTAGTAATAAGTGCAGGCTACT
1 ACGTGTGTAGT-ATAAGTGCAGGCTACT
80963074 ACGTGT
1 ACGTGT
80963080 ACTGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 7 0.17
23 3 0.07
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (27 bp):
ACGTGTGTAGTATAAGTGCAGGCTACT
Found at i:80963114 original size:49 final size:49
Alignment explanation
Indices: 80962948--80963172 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 49
80962938 TGAGGTCGCA
* * * * *
80962948 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
80962999 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
* *
80963049 TGTGTAGTAATAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * * *
80963098 TGTGTAGTGCTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
80963147 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
80963173 TGCGCACCAG
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 74 0.49
50 43 0.29
51 33 0.22
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:80963124 original size:99 final size:100
Alignment explanation
Indices: 80962941--80963172 Score: 288
Period size: 99 Copynumber: 2.3 Consensus size: 100
80962931 TCTATTGTGA
* *
80962941 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* * **
80963006 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAAGCTACTACGTGTACCAGATAATT
* * * ** * *
80963041 AGGTCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACTGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTA
* *
80963104 GTGCTAAGTGCAAGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAAGCTACTACGTGTACCAGATAATT
* *
80963140 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
80963173 TGCGCACCAG
Statistics
Matches: 112, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 29 0.26
99 43 0.38
100 1 0.01
101 39 0.35
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAAGCTACTACGTGTACCAGATAATT
Found at i:80972540 original size:47 final size:47
Alignment explanation
Indices: 80972487--80972969 Score: 777
Period size: 47 Copynumber: 10.3 Consensus size: 47
80972477 ACAAGATATG
80972487 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
80972534 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
80972581 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
80972628 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * **
80972675 TATATGAGATAAGACCTAATGGCTGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
80972722 TATATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
80972769 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
80972816 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
80972863 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
80972910 TATATGTGATAAGGCCGAATGGCCAATTTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
80972957 TAAATGTGATAAG
1 TATATGTGATAAG
80972970 TCCCGAAGGG
Statistics
Matches: 403, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 403 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:80972612 original size:22 final size:22
Alignment explanation
Indices: 80972584--80972659 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
80972574 AAGTGTATAT
80972584 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
80972606 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
80972630 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
80972653 ATGTGAT
1 ATGTGAT
80972660 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:80977748 original size:40 final size:40
Alignment explanation
Indices: 80977689--80977876 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
80977679 GAGCATTGGA
* *
80977689 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
80977729 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
80977769 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
*
80977809 ATATATCTGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
80977849 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
80977877 ATGTGTTTGC
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:80986468 original size:39 final size:40
Alignment explanation
Indices: 80986391--80986551 Score: 256
Period size: 39 Copynumber: 4.1 Consensus size: 40
80986381 AAAAAAGAAA
80986391 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
*
80986431 GCAATTATGCGAGTTGATATAT-CGGGCTATGACCCGAAG
1 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
*
80986470 GCAATTATGC-AGATGATATATCCGGGCTAAGACCCGAAG
1 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
* * *
80986509 GCAATTATGCAAGTTGATATGT-CGGGTTAAGACCCGAAG
1 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
80986548 GCAA
1 GCAA
80986552 ATGTGTTTGC
Statistics
Matches: 113, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
38 10 0.09
39 72 0.64
40 31 0.27
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (40 bp):
GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
Found at i:80995062 original size:40 final size:40
Alignment explanation
Indices: 80995007--80995354 Score: 633
Period size: 40 Copynumber: 8.7 Consensus size: 40
80994997 GAGCATTGGA
80995007 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
80995047 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
80995087 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
80995127 ATATACCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
80995167 ATATACCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
80995207 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
80995247 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
80995287 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
80995327 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
80995355 ATGTGTTTGC
Statistics
Matches: 299, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 299 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:80996897 original size:27 final size:25
Alignment explanation
Indices: 80996866--80996930 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 25
80996856 ATTTTTTCCC
*
80996866 ATCTAATAATAATAATTTTATAAATAT
1 ATCTAATAATAA-AAATTTA-AAATAT
*
80996893 ATCTAATCATAAAAATTTAAAATAT
1 ATCTAATAATAAAAATTTAAAATAT
*
80996918 -CCGTAATAATAAA
1 ATC-TAATAATAAA
80996931 TACAGTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 15 0.45
26 6 0.18
27 11 0.33
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.37
Consensus pattern (25 bp):
ATCTAATAATAAAAATTTAAAATAT
Found at i:81012765 original size:28 final size:29
Alignment explanation
Indices: 81012725--81012794 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 29
81012715 GTAGTAAGTC
*
81012725 CGCACACTTAGTGCTTA-ATAATCAAACT
1 CGCACACTTAGTGCTTATACAATCAAACT
*
81012753 CGCACACTTAGTG-TTATACAATTAAACT
1 CGCACACTTAGTGCTTATACAATCAAACT
81012781 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81012795 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 3 0.08
28 35 0.92
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATACAATCAAACT
Found at i:81018085 original size:40 final size:40
Alignment explanation
Indices: 81018014--81018231 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
81018004 AAGCCAAGTA
* * * *
81018014 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
81018053 CCTTTGGGACATAGCCTGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81018093 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81018133 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
81018173 CCTTTGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81018213 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81018232 TTCTCATCCA
Statistics
Matches: 158, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 12 0.08
40 146 0.92
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81024193 original size:22 final size:22
Alignment explanation
Indices: 81024168--81024215 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
81024158 CTCAATGCCA
*
81024168 TAGACAGGACGGCTCAACATCG
1 TAGACAGGACGACTCAACATCG
*
81024190 TAGACAGGATGACTCAACATCG
1 TAGACAGGACGACTCAACATCG
81024212 TAGA
1 TAGA
81024216 TAGGGTGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (22 bp):
TAGACAGGACGACTCAACATCG
Found at i:81024625 original size:27 final size:27
Alignment explanation
Indices: 81024595--81024650 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
81024585 AGGCATAATC
81024595 GTCATTCCAC-CATACAAGGGTATTACA
1 GTCATTCCACAC-TACAAGGGTATTACA
** *
81024622 GTCATTTTACACTACAAGGGTATTTCA
1 GTCATTCCACACTACAAGGGTATTACA
81024649 GT
1 GT
81024651 AATTTTACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (27 bp):
GTCATTCCACACTACAAGGGTATTACA
Found at i:81024655 original size:27 final size:27
Alignment explanation
Indices: 81024607--81024658 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
81024597 CATTCCACCA
*
81024607 TACAAGGGTATTACAGTCATTTTACAC
1 TACAAGGGTATTACAGTAATTTTACAC
*
81024634 TACAAGGGTATTTCAGTAATTTTAC
1 TACAAGGGTATTACAGTAATTTTAC
81024659 CAATATTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (27 bp):
TACAAGGGTATTACAGTAATTTTACAC
Found at i:81026724 original size:127 final size:127
Alignment explanation
Indices: 81026498--81026751 Score: 348
Period size: 127 Copynumber: 2.0 Consensus size: 127
81026488 CGACTCAATG
* *
81026498 TCATAGACAGTACGGCTAAAGGCCATAAATATCGTAGCAACGCTGCCAGTTACCAGAACGACTAT
1 TCATAGACAGGACGGCTAAAGGCCATAAATATCGTAGCAACGCTGCCAGTTAACAGAACGACTAT
***
81026563 AAGCCATAAATATTGGAGAAAGGCTGAAAGCCTTAAACAGGACGGCTACAGGCCATACACTT
66 AAGCCATAAATATCACAGAAAGGCTGAAAGCCTTAAACAGGACGGCTACAGGCCATACACTT
* * * *
81026625 TCATAGACAGGACGGCTAAAGGCCGTAAGTATC-TCAGCCACGCTGCCAGTTAATAGAACGACTA
1 TCATAGACAGGACGGCTAAAGGCCATAAATATCGT-AGCAACGCTGCCAGTTAACAGAACGACTA
* * * * * * *
81026689 TTAGCCCTAAGTATCACAGAAAGGCTGAAAGCCTTATACAGGATGGCTACATGCCGTACACTT
65 TAAGCCATAAATATCACAGAAAGGCTGAAAGCCTTAAACAGGACGGCTACAGGCCATACACTT
81026752 CCTCCGTCTA
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
126 1 0.01
127 109 0.99
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (127 bp):
TCATAGACAGGACGGCTAAAGGCCATAAATATCGTAGCAACGCTGCCAGTTAACAGAACGACTAT
AAGCCATAAATATCACAGAAAGGCTGAAAGCCTTAAACAGGACGGCTACAGGCCATACACTT
Found at i:81026926 original size:27 final size:26
Alignment explanation
Indices: 81026896--81026953 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
81026886 CATTCTACCA
81026896 TACAGGGACATTACGG-TCATTTTACAC
1 TACAGGG-CATTACGGCT-ATTTTACAC
*
81026923 TACAAGGGTATTACGGCTATTTTACAC
1 TAC-AGGGCATTACGGCTATTTTACAC
81026950 TACA
1 TACA
81026954 AGGGTATTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 1 0.04
27 22 0.79
28 5 0.18
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (26 bp):
TACAGGGCATTACGGCTATTTTACAC
Found at i:81026954 original size:27 final size:27
Alignment explanation
Indices: 81026905--81026974 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
81026895 ATACAGGGAC
*
81026905 ATTACGGTCATTTTACACTACAAGGGT
1 ATTACGGTAATTTTACACTACAAGGGT
81026932 ATTACGGCT-ATTTTACACTACAAGGGT
1 ATTACGG-TAATTTTACACTACAAGGGT
*
81026959 ATTTCGGTAATTTTAC
1 ATTACGGTAATTTTAC
81026975 CAATATTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (27 bp):
ATTACGGTAATTTTACACTACAAGGGT
Found at i:81029294 original size:21 final size:21
Alignment explanation
Indices: 81029270--81029314 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
81029260 TCGTTTATTA
81029270 ATGGAGAAATATGAATGTTTG
1 ATGGAGAAATATGAATGTTTG
*
81029291 ATGGAGGAATATGAATGTTTG
1 ATGGAGAAATATGAATGTTTG
81029312 ATG
1 ATG
81029315 CATGATAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.33
Consensus pattern (21 bp):
ATGGAGAAATATGAATGTTTG
Found at i:81033998 original size:54 final size:53
Alignment explanation
Indices: 81033917--81034078 Score: 211
Period size: 54 Copynumber: 3.0 Consensus size: 53
81033907 CCATGGCAAC
* * *
81033917 ATGTGATATGTGATTTTCGTATAAGACCATAGCTGGGCTATGACATCGATGTG
1 ATGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGATGTG
*
81033970 ATGTGATCATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGA-GAG
1 ATGTGAT-ATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATC-GATGTG
* * * *
81034024 ATGTGATTATGTG-CTTCCGTATAAGACCATATTTGGGATATGGCATCGGTGTG
1 ATGTGA-TATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGATGTG
81034077 AT
1 AT
81034079 ATGTGCTACT
Statistics
Matches: 96, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
52 1 0.01
53 42 0.44
54 50 0.52
55 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (53 bp):
ATGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGATGTG
Found at i:81034066 original size:53 final size:51
Alignment explanation
Indices: 81033917--81034131 Score: 203
Period size: 54 Copynumber: 4.3 Consensus size: 51
81033907 CCATGGCAAC
* * *
81033917 ATGTGATATGTGATTTTCGTATAAGACCATAGCTGGGCTATGACATCGATGTG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGACATCGA-G-G
* * * *
81033970 ATGTGATCATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGAGAG
1 ATGTGAT-ATGTGACTTCCGTATAAGACCATAGCTGGGATATGACATC-GAG-G
** *
81034024 ATGTGATTATGTG-CTTCCGTATAAGACCATATTTGGGATATGGCATC--GG
1 ATGTGA-TATGTGACTTCCGTATAAGACCATAGCTGGGATATGACATCGAGG
* * *
81034073 -TGTGATATGTG-CTACTGTATAAGACCATATCTGGGATATGACATC-A-G
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGACATCGAGG
81034120 -TGTGATATGTGA
1 ATGTGATATGTGA
81034132 TCCATGTAAG
Statistics
Matches: 146, Mismatches: 11, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
47 48 0.33
48 5 0.03
49 1 0.01
50 1 0.01
53 38 0.26
54 50 0.34
55 3 0.02
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (51 bp):
ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGACATCGAGG
Found at i:81034095 original size:47 final size:47
Alignment explanation
Indices: 81033989--81034178 Score: 170
Period size: 47 Copynumber: 3.9 Consensus size: 47
81033979 TGTGATTTCC
* * *
81033989 GTATAAGACCATAGTTGGGCTATGGCATCGGAGAGATGTGATTATGTGCTTCC
1 GTATAAGACCATAGTTGGGATATGGCATC---G-G-TGTGA-TATGTGCTACT
*
81034042 GTATAAGACCATATTTGGGATATGGCATCGGTGTGATATGTGCTACT
1 GTATAAGACCATAGTTGGGATATGGCATCGGTGTGATATGTGCTACT
* * * *
81034089 GTATAAGACCATA-TCTGGGATATGACATCAGTGTGATATGTGATCCAT
1 GTATAAGACCATAGT-TGGGATATGGCATCGGTGTGATATGTGCTAC-T
* * *
81034137 G--TAAGACCATGGTTGGGCTATGGCTTCGGTGTGTAATATGTG
1 GTATAAGACCATAGTTGGGATATGGCATCGGTGTG--ATATGTG
81034179 ACTATATGCA
Statistics
Matches: 119, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
46 26 0.22
47 50 0.42
48 14 0.12
49 1 0.01
50 1 0.01
53 27 0.23
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (47 bp):
GTATAAGACCATAGTTGGGATATGGCATCGGTGTGATATGTGCTACT
Found at i:81039433 original size:21 final size:20
Alignment explanation
Indices: 81039399--81039437 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
81039389 AATGCAAACA
81039399 AGGGCACACACCCGTGTGGG
1 AGGGCACACACCCGTGTGGG
*
81039419 AGGGCGACACGCCCGTGTG
1 AGGGC-ACACACCCGTGTG
81039438 TCCTCTTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.18, C:0.31, G:0.41, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGGG
Found at i:81042522 original size:48 final size:48
Alignment explanation
Indices: 81042418--81042796 Score: 352
Period size: 48 Copynumber: 7.9 Consensus size: 48
81042408 AGGGTAAGAT
* * * *
81042418 GCCGATGCCATGTTCTAAACATGGTCTTACACTAGCTCTCATAT--AA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* * *
81042464 GCATCGATGCCATGTTCCAAATAAGGGCTTACACTGGCTCACATATCGAG
1 GC--CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* ** * ** * * *
81042514 GCCAATGCCATGCCCCAGACATGGTCTTACACTAACTCTCATATCAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* *
81042562 GCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTTACATATCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* * * * * * *
81042610 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATATCAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* * *
81042658 GTCGATGCCATGTT-CAGAACATGGTCTTACATTGGCTCACATATTGAG
1 GCCGATGCCATGTTCCA-AACATGGTCTTACACTGGCTCACATATCGAG
** * * * * * *
81042706 GTTGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATC-AA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
* *
81042753 TCCTAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 GCC-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
81042797 ACCCTAATAT
Statistics
Matches: 261, Mismatches: 65, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
46 2 0.01
47 3 0.01
48 251 0.96
49 2 0.01
50 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
Found at i:81042591 original size:96 final size:96
Alignment explanation
Indices: 81042418--81042796 Score: 523
Period size: 96 Copynumber: 3.9 Consensus size: 96
81042408 AGGGTAAGAT
* * *
81042418 GCCGATGCCATGTTCTAAACATGGTCTTACACTAGCTCTCATAT-AA-GCATCGATGCCATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGC--CGATGCCATGTTC
* * *
81042481 CAAATAAGGGCTTACACTGGCTCACATATCGAG
64 CAAACATGGTCTTACACTGGCTCACATATCGAG
* * *
81042514 GCCAATGCCATGCCCCAGACATGGTCTTACACTAACTCTCATATCAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
* *
81042579 AACATGGTCTTACATTGGCTTACATATCGAG
66 AACATGGTCTTACACTGGCTCACATATCGAG
* *
81042610 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATATCAATGTCGATGCCATGTT-CA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
* *
81042674 GAACATGGTCTTACATTGGCTCACATATTGAG
66 -AACATGGTCTTACACTGGCTCACATATCGAG
** * *
81042706 GTTGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATCAAT-CCTAATGCCATGTTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC-GATGCCATGTTCC
81042770 AAACATGGTCTTACACTGGCTCACATA
65 AAACATGGTCTTACACTGGCTCACATA
81042797 ACCCTAATAT
Statistics
Matches: 253, Mismatches: 25, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
95 3 0.01
96 244 0.96
97 4 0.02
98 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
AACATGGTCTTACACTGGCTCACATATCGAG
Found at i:81042680 original size:144 final size:143
Alignment explanation
Indices: 81042416--81042796 Score: 408
Period size: 144 Copynumber: 2.6 Consensus size: 143
81042406 AAAGGGTAAG
* *
81042416 ATGCCGATGCCATGTTCTAAACATGGTCTTACACTAGCTCTCATAT-AAGCATCGATGCCATGTT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCTCATATCAAGC--CGATGCCATGTT
* * * *
81042480 CCAAATAAGGGCTTACACTGGCTCACATATCGAGGCCAATGCCATGCCCCAGACATGGTCTTACA
64 CCAAACATGGTCTTACACTGGCTCACATATCAAGGCCAATGCCATGCCCCAGACATGGTCTTACA
*
81042545 CTAACTCTCATATCA
129 CTAACTCACATATCA
* * *
81042560 ATGCCGATGCCATGTTCCAAACATGGTCTTACATTGGCT-TACATATCGAGGCCGATGCCATGTC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCT-CATATC-AAGCCGATGCCATGTT
* * * * * * * **
81042624 CCAGACATGGTCTTATACTAGCTCTCATATCAATGTCGATGCCATG-TTCAGAACATGGTCTTAC
64 CCAAACATGGTCTTACACTGGCTCACATATCAAGGCCAATGCCATGCCCCAG-ACATGGTCTTAC
* ** **
81042688 ATTGGCTCACATATTG
128 ACTAACTCACATATCA
* ** * * * *
81042704 AGGTTGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCATATCAATCCTAATGCCATGTTC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCTCATATCAAGCC-GATGCCATGTTC
81042769 CAAACATGGTCTTACACTGGCTCACATA
65 CAAACATGGTCTTACACTGGCTCACATA
81042797 ACCCTAATAT
Statistics
Matches: 193, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
143 7 0.04
144 182 0.94
145 1 0.01
146 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (143 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCTCATATCAAGCCGATGCCATGTTCC
AAACATGGTCTTACACTGGCTCACATATCAAGGCCAATGCCATGCCCCAGACATGGTCTTACACT
AACTCACATATCA
Found at i:81045393 original size:38 final size:38
Alignment explanation
Indices: 81045350--81045452 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
81045340 GAAGGCCCGA
* * *
81045350 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
*
81045388 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
** *
81045426 ATATTTTACCAACACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
81045453 TCTTTAAGCC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:81054881 original size:13 final size:13
Alignment explanation
Indices: 81054860--81054894 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
81054850 TTGCAGACTT
*
81054860 CACAAGCCCTGGG
1 CACATGCCCTGGG
81054873 CACATGCCCTGGG
1 CACATGCCCTGGG
81054886 CACATGCCC
1 CACATGCCC
81054895 ATGTCCCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.20, C:0.43, G:0.26, T:0.11
Consensus pattern (13 bp):
CACATGCCCTGGG
Found at i:81058611 original size:69 final size:70
Alignment explanation
Indices: 81058479--81058611 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
81058469 TAGTTTATTA
* * * *
81058479 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
81058544 CTTAG
66 CTTAG
81058549 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
81058612 TTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:81059559 original size:40 final size:39
Alignment explanation
Indices: 81059370--81059947 Score: 665
Period size: 39 Copynumber: 14.7 Consensus size: 39
81059360 ATTTGATGTA
* *
81059370 TATCCGGACTTGAGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
81059409 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
81059448 TATCCAGACTTAAGGTCCGCAAGCTTTGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
81059487 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * ** * *
81059526 TATCTGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTT
1 TATCCGGACTT-AAGGTCCGCAGGCT-TCGTGCTGGAATTG
* * * *
81059566 TATCCGGGCTTAAAGACCTGCAGGCTTTGTGCTGGAATTG
1 TATCCGGACTTAAGGTCC-GCAGGCTTCGTGCTGGAATTG
81059606 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
81059645 TATCCGGACTTAAGGTCCGCAGGCTTCGTACTAGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** *
81059684 TATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
** *
81059724 TATCAAGACTTAAGGT-CGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
81059762 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** *
81059801 TATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * **
81059841 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * ** * * *
81059881 TATTCAGACTTAAGATCCATAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
** * *
81059920 TATTTGGAGTTAAGGTCCGCACGCTTCG
1 TATCCGGACTTAAGGTCCGCAGGCTTCG
81059948 CACTGGTACT
Statistics
Matches: 467, Mismatches: 65, Indels: 14
0.86 0.12 0.03
Matches are distributed among these distances:
38 35 0.07
39 267 0.57
40 164 0.35
41 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:81059864 original size:236 final size:236
Alignment explanation
Indices: 81059370--81059909 Score: 719
Period size: 236 Copynumber: 2.3 Consensus size: 236
81059360 ATTTGATGTA
* ** * *
81059370 TATCCGGACTTGAGGTCCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTT
1 TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
* * * * * **
81059435 CGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAAGCTTTGTGCTGGAATTGTATCCGGACTTAA
66 CGTACTAGAATTGTATCCAGACTTAAAGACCGCAAGCTTCGTGCTGGAATTGTATCAAGACTTAA
** *
81059500 GGTCCGCAAGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGCTGGAATT
131 GGTCCGCAAGCTTCGTGCTGGAATTGTATCCAGACTTAAAGACCCGCAGGCTATATGCTGGAATT
* ** *
81059565 TTATCCGGGCTTAAAGACCTGCAGGCTTTGTGCTGGAATTG
196 GTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTG
**
81059606 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
1 TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
* *
81059671 CGTACTAGAATTGTATCCGGGCTTAAAGACC-CACAGGCTTCGTGCTGGAATTGTATCAAGACTT
66 CGTACTAGAATTGTATCCAGACTTAAAGACCGCA-A-GCTTCGTGCTGGAATTGTATCAAGACTT
** *
81059735 AAGGT-CGCAAGCTTCGTGCTGGAATTGTATCCAGACTT-AAGGTCCGCAGGCT-TCGTGCTGGA
129 AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCAGACTTAAAGACCCGCAGGCTAT-ATGCTGGA
81059797 ATTGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTG
193 ATTGTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTG
* * * * * **
81059841 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATTCAGACTTAAGATCCATAGGCT
1 TATCCGGACTT-AAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCT
81059906 TCGT
65 TCGT
81059910 GCTGGTACTA
Statistics
Matches: 269, Mismatches: 31, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
234 1 0.00
235 70 0.26
236 168 0.62
237 30 0.11
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (236 bp):
TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
CGTACTAGAATTGTATCCAGACTTAAAGACCGCAAGCTTCGTGCTGGAATTGTATCAAGACTTAA
GGTCCGCAAGCTTCGTGCTGGAATTGTATCCAGACTTAAAGACCCGCAGGCTATATGCTGGAATT
GTATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTG
Found at i:81059866 original size:275 final size:275
Alignment explanation
Indices: 81059368--81059947 Score: 842
Period size: 275 Copynumber: 2.1 Consensus size: 275
81059358 ATATTTGATG
* * * * * *
81059368 TATATCCGGACTTGAGGTCCGCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGC
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTACTAGAATTGTATCCGGACTTAAAGACCGCAAGC
* * *
81059433 TTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAAGCTTTGTGCTGGAATTGTATCCGGACTT
66 TTCGTGCTGGAATTGTATCAAGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCAGACTT
* *
81059498 AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGCTGGAA
131 AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAA
* * * * * *
81059563 TTTTATCCGGGCTTAAAGACCTGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAG
196 TTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCAGACTTAAGATCCACAG
*
81059628 GCTTCGTGCTGGAAT
261 GCTTCGTGCTGGAAC
* *
81059643 TGTATCCGGACTTAAGGTCCGCAGGCTTCGTACTAGAATTGTATCCGGGCTTAAAGACC-CACAG
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTACTAGAATTGTATCCGGACTTAAAGACCGCA-A-
81059707 GCTTCGTGCTGGAATTGTATCAAGACTTAAGGT-CGCAAGCTTCGTGCTGGAATTGTATCCAGAC
64 GCTTCGTGCTGGAATTGTATCAAGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCAGAC
* *
81059771 TTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT-TCGTGCTG
129 TTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTAT-ATGCTG
* *
81059835 GAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATTCAGACTTAAGATCCA
193 GAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCAGACTTAAGATCCA
* *
81059900 TAGGCTTCGTGCTGGTAC
258 CAGGCTTCGTGCTGGAAC
** * *
81059918 TATATTTGGAGTTAAGGTCCGCACGCTTCG
1 TATATCCGGACTTAAGGTCCGCAGGCTTCG
81059948 CACTGGTACT
Statistics
Matches: 271, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
274 3 0.01
275 236 0.87
276 32 0.12
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (275 bp):
TATATCCGGACTTAAGGTCCGCAGGCTTCGTACTAGAATTGTATCCGGACTTAAAGACCGCAAGC
TTCGTGCTGGAATTGTATCAAGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCAGACTT
AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAA
TTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCAGACTTAAGATCCACAG
GCTTCGTGCTGGAAC
Found at i:81068803 original size:21 final size:21
Alignment explanation
Indices: 81068778--81068827 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
81068768 TTTTGATATT
81068778 ATCTTTATATTACTATTATAC
1 ATCTTTATATTACTATTATAC
*
81068799 ATCTTTATATTACTATTATAT
1 ATCTTTATATTACTATTATAC
*
81068820 ATCATTAT
1 ATCTTTAT
81068828 CAGAAAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (21 bp):
ATCTTTATATTACTATTATAC
Found at i:81071934 original size:15 final size:15
Alignment explanation
Indices: 81071914--81071944 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81071904 TTAATGTAGG
81071914 TTTAGCACGTGATAA
1 TTTAGCACGTGATAA
*
81071929 TTTAGCATGTGATAA
1 TTTAGCACGTGATAA
81071944 T
1 T
81071945 GATAACTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (15 bp):
TTTAGCACGTGATAA
Found at i:81075582 original size:80 final size:82
Alignment explanation
Indices: 81075442--81075627 Score: 245
Period size: 80 Copynumber: 2.3 Consensus size: 82
81075432 TCGAATGATG
* *
81075442 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATTCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATT
*
81075506 GGTGCGAGTTACTA-AA
66 GGTGCGAGATACTATAA
* * * * * *
81075522 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATT
*
81075586 TGTGCGAGATACTATAA
66 GGTGCGAGATACTATAA
*
81075603 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81075628 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 83 0.90
81 9 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAACCGGACTAAGATCCAAAGGCATT
GGTGCGAGATACTATAA
Found at i:81075641 original size:40 final size:40
Alignment explanation
Indices: 81075443--81075627 Score: 173
Period size: 40 Copynumber: 4.6 Consensus size: 40
81075433 CGAATGATGT
* * *
81075443 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAA
* * * * *
81075483 CCGGACTAAGAT-TCAAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATAA
* *
81075522 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
* *
81075563 CCGGACTAGGAT-CCGAAGGCATTTGTGCGAGATACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATAA
*
81075603 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81075628 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 16
0.77 0.12 0.10
Matches are distributed among these distances:
39 3 0.03
40 103 0.87
41 12 0.10
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
Found at i:81093396 original size:26 final size:27
Alignment explanation
Indices: 81093367--81093533 Score: 94
Period size: 27 Copynumber: 6.2 Consensus size: 27
81093357 CAAAATAGGT
81093367 AAATGATCGTAA-ACCCCGATAGGGTA
1 AAATGATCGTAATACCCCGATAGGGTA
* * *
81093393 AAATGA-CTGTAATGCTCCGGTAGGGTA
1 AAATGATC-GTAATACCCCGATAGGGTA
* * *** *
81093420 AAATGATCGTACTGCATTTG-TAAGGTA
1 AAATGATCGTAATAC-CCCGATAGGGTA
* *
81093447 AAATGACCGTAATGCCCCTG-TAGGGTA
1 AAATGATCGTAATACCCC-GATAGGGTA
* * *
81093474 AAATGA-CTATAATGCCCTTG-TAGGGTA
1 AAATGATC-GTAATACCC-CGATAGGGTA
* * *
81093501 AAATGATCATAATACCCCTACAGGGTA
1 AAATGATCGTAATACCCCGATAGGGTA
81093528 AAATGA
1 AAATGA
81093534 CAGTAATGTT
Statistics
Matches: 113, Mismatches: 19, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.01
26 11 0.10
27 97 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (27 bp):
AAATGATCGTAATACCCCGATAGGGTA
Found at i:81093422 original size:27 final size:27
Alignment explanation
Indices: 81093386--81093614 Score: 153
Period size: 27 Copynumber: 8.5 Consensus size: 27
81093376 TAAACCCCGA
*
81093386 TAGGGTAAAATGACTGTAATGCTCCGG
1 TAGGGTAAAATGACTGTAATGCTCCTG
* *
81093413 TAGGGTAAAATGA-TCGTACTGCAT-TTG
1 TAGGGTAAAATGACT-GTAATGC-TCCTG
* * *
81093440 TAAGGTAAAATGACCGTAATGCCCCTG
1 TAGGGTAAAATGACTGTAATGCTCCTG
*
81093467 TAGGGTAAAATGACTATAATGC-CCTTG
1 TAGGGTAAAATGACTGTAATGCTCC-TG
* * * *
81093494 TAGGGTAAAATGA-TCATAATACCCCTA
1 TAGGGTAAAATGACT-GTAATGCTCCTG
* * * *
81093521 CAGGGTAAAATGACAGTAATGTTCATG
1 TAGGGTAAAATGACTGTAATGCTCCTG
* * ** * *
81093548 TAAGATAAAATGACCATAACGCCCCTG
1 TAGGGTAAAATGACTGTAATGCTCCTG
* * * *
81093575 TA-GGTAAGATGACCGTAATACCCCTG
1 TAGGGTAAAATGACTGTAATGCTCCTG
*
81093601 TATGGTAAAATGAC
1 TAGGGTAAAATGAC
81093615 GATTATGCCT
Statistics
Matches: 157, Mismatches: 36, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
26 25 0.16
27 129 0.82
28 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
TAGGGTAAAATGACTGTAATGCTCCTG
Found at i:81093495 original size:54 final size:54
Alignment explanation
Indices: 81093389--81093623 Score: 188
Period size: 54 Copynumber: 4.4 Consensus size: 54
81093379 ACCCCGATAG
** * * * * **
81093389 GGTAAAATGACTGTAATGCTCCGGTAGGGTAAAATGA-TCGTACTGCATTTGTAA
1 GGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACT-ATAATGCCCTTGTAA
* *
81093443 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACTATAATGCCCTTGTAG
1 GGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACTATAATGCCCTTGTAA
* * ** ** *
81093497 GGTAAAATGATCATAATACCCCTACAGGGTAAAATGAC-AGTAATGTTCATGTAA
1 GGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACTA-TAATGCCCTTGTAA
* * * ** * * *
81093551 GATAAAATGACCATAACGCCCCTGTA-GGTAAGATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACTATAATGCCCTTGTAA
* *
81093604 GGTAAAATGACGATTATGCC
1 GGTAAAATGACCATAATGCC
81093624 TTTTTGTTTC
Statistics
Matches: 144, Mismatches: 34, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 36 0.25
54 107 0.74
55 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (54 bp):
GGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACTATAATGCCCTTGTAA
Found at i:81093528 original size:81 final size:80
Alignment explanation
Indices: 81093443--81093614 Score: 200
Period size: 81 Copynumber: 2.1 Consensus size: 80
81093433 GCATTTGTAA
* * * * * * * *
81093443 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACTATAATGCCCTTGTAGGGTAAAATGAT
1 GGTAAAATGACAGTAATGCCCATGTAAGATAAAATGACCATAACGCCCCTGTA-GGTAAAATGAC
81093508 CATAATACCCCTACAG
65 CATAATACCCCTACAG
** *
81093524 GGTAAAATGACAGTAATGTTCATGTAAGATAAAATGACCATAACGCCCCTGTAGGTAAGATGACC
1 GGTAAAATGACAGTAATGCCCATGTAAGATAAAATGACCATAACGCCCCTGTAGGTAAAATGACC
* ** *
81093589 GTAATACCCCTGTAT
66 ATAATACCCCTACAG
81093604 GGTAAAATGAC
1 GGTAAAATGAC
81093615 GATTATGCCT
Statistics
Matches: 76, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 32 0.42
81 44 0.58
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (80 bp):
GGTAAAATGACAGTAATGCCCATGTAAGATAAAATGACCATAACGCCCCTGTAGGTAAAATGACC
ATAATACCCCTACAG
Found at i:81110263 original size:27 final size:27
Alignment explanation
Indices: 81110224--81110401 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
81110214 ACATTGAGCC
* * * *
81110224 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
81110251 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
81110278 CGCACACTTAGTGCTACATAGTCAGGCT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
81110306 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81110333 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
81110360 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
81110387 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
81110402 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81110363 original size:82 final size:81
Alignment explanation
Indices: 81110245--81110400 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
81110235 TGCTATATAA
* * * **
81110245 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGGCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
81110310 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
81110327 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
81110391 CCCTTAGTGC
65 CACTTAGTGC
81110401 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81113940 original size:27 final size:26
Alignment explanation
Indices: 81113910--81114113 Score: 194
Period size: 27 Copynumber: 7.5 Consensus size: 26
81113900 AAATTGTACA
*
81113910 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* * *
81113937 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTG
* *
81113964 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
81113991 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
81114018 GCACTAAGTGTGCGAGTCTGACTATGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
81114046 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
81114073 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
81114100 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81114114 GGCTCAATAT
Statistics
Matches: 156, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 128 0.82
28 27 0.17
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:81113970 original size:54 final size:53
Alignment explanation
Indices: 81113910--81114113 Score: 219
Period size: 54 Copynumber: 3.8 Consensus size: 53
81113900 AAATTGTACA
* *
81113910 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * ** *
81113964 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * *
81114018 GCACTAAGTGTGCGAGTCTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * *
81114073 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTTGCACTAAGTGTGCG
81114114 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 77 0.61
55 48 0.38
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
Found at i:81114104 original size:109 final size:108
Alignment explanation
Indices: 81113910--81114113 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 108
81113900 AAATTGTACA
* * * *
81113910 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
81113975 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
81114018 GCACTAAGTGTGCGAGTCTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
81114083 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
81114114 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:81121993 original size:27 final size:26
Alignment explanation
Indices: 81121963--81122166 Score: 192
Period size: 27 Copynumber: 7.5 Consensus size: 26
81121953 AAATTGTACA
81121963 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* *
81121990 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* * *
81122017 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
81122044 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
81122071 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * *
81122099 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
81122126 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
81122153 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81122167 GGCTCAATAT
Statistics
Matches: 154, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 25 0.16
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:81122023 original size:54 final size:53
Alignment explanation
Indices: 81121963--81122166 Score: 221
Period size: 54 Copynumber: 3.8 Consensus size: 53
81121953 AAATTGTACA
* * *
81121963 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * ** *
81122017 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTA-GCACTAAGTGTGCGAATTGAATATGTG
* * *
81122071 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * *
81122126 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
81122167 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 77 0.61
55 48 0.38
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
Found at i:81122157 original size:109 final size:108
Alignment explanation
Indices: 81121963--81122166 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 108
81121953 AAATTGTACA
* * * *
81121963 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
81122028 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
81122071 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
81122136 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
81122167 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:81124395 original size:24 final size:24
Alignment explanation
Indices: 81124336--81124395 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
81124326 ACTATTATCC
81124336 ATTTTAAATT-TTATATATTATTT
1 ATTTTAAATTATTATATATTATTT
*
81124359 ATTTTAAACTATTATATATTATTT
1 ATTTTAAATTATTATATATTATTT
*
81124383 ATTTTGAATTATT
1 ATTTTAAATTATT
81124396 TTTTTATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 9 0.27
24 24 0.73
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
ATTTTAAATTATTATATATTATTT
Found at i:81124546 original size:27 final size:26
Alignment explanation
Indices: 81124417--81124619 Score: 134
Period size: 26 Copynumber: 7.9 Consensus size: 26
81124407 ATCTTTTGTT
* * *
81124417 TTTAAATCGTTTTGTATATTATTTAT
1 TTTAAATTGTTTTATATATTATTTAC
* *
81124443 TTTAAATTTCTTTTTACATATTATTTA-
1 TTTAAA-TT-GTTTTATATATTATTTAC
* * * **
81124470 TCTTGAACTCTTTTATATGCTA--T--
1 T-TTAAATTGTTTTATATATTATTTAC
* * *
81124493 TTTAAAGTGTCTTATATATTATATAC
1 TTTAAATTGTTTTATATATTATTTAC
* *
81124519 TTTAAAATTGCTTTGTATATTATTTAC
1 TTT-AAATTGTTTTATATATTATTTAC
* * *
81124546 TTTAATTTGTTTTACATATTGA-TTAT
1 TTTAAATTGTTTTATATATT-ATTTAC
81124572 TTTAAATTG-TTT-TATATTATTTAC
1 TTTAAATTGTTTTATATATTATTTAC
*
81124596 TTCAAATTGTTTTATATATTATTT
1 TTTAAATTGTTTTATATATTATTT
81124620 TGTTTCGTTT
Statistics
Matches: 135, Mismatches: 30, Indels: 24
0.71 0.16 0.13
Matches are distributed among these distances:
22 14 0.10
23 2 0.01
24 18 0.13
25 6 0.04
26 52 0.39
27 25 0.19
28 18 0.13
ACGTcount: A:0.29, C:0.07, G:0.06, T:0.59
Consensus pattern (26 bp):
TTTAAATTGTTTTATATATTATTTAC
Found at i:81126564 original size:19 final size:19
Alignment explanation
Indices: 81126540--81126583 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
81126530 GCCTCTTTTT
*
81126540 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCAT-CATA
*
81126559 TGCATTGTATTTCATCATA
1 TGCATTGCATTTCATCATA
81126578 TGCATT
1 TGCATT
81126584 AAATTTCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.45
Consensus pattern (19 bp):
TGCATTGCATTTCATCATA
Found at i:81126589 original size:19 final size:20
Alignment explanation
Indices: 81126547--81126591 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
81126537 TTTTGCATTC
* **
81126547 ATTTCATGCATCTGCATTGT
1 ATTTCATGCATATGCATTAA
81126567 ATTTCAT-CATATGCATTAA
1 ATTTCATGCATATGCATTAA
81126586 ATTTCA
1 ATTTCA
81126592 CAAAAGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (20 bp):
ATTTCATGCATATGCATTAA
Found at i:81130776 original size:45 final size:45
Alignment explanation
Indices: 81130672--81131441 Score: 438
Period size: 45 Copynumber: 16.8 Consensus size: 45
81130662 ATAGTGGATT
* * ** * *
81130672 TTATCTCCCTGAAGTTGTAGTGGAGCAGATCGAAG-CCACTAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATC
* **
81130716 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATC
* * * *
81130761 TTATTTCCCTAAAGTTGTAGTGGAACAGA-T-----T-ACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATC
** * * *
81130799 TTATCTCCCTGAAGTTGCAGTGGAATAG-GTCAGAGATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGATAACAAATC
* * * * * * *
81130844 TTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCT-ATAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATC
* * * * *
81130888 TTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--ATAACAAATC
* * * * *
81130935 TTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAGATAGCGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATC
* ** * *
81130980 TTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAATTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AGATAACAAATC
* * * *
81131031 TTATTTCCCTGAAGTTGCAGTGGAACAGATTAAGGCTACAAATTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AGATAACAAATC
* ** *
81131082 TCATCTCTTTGAAGTTGCAGTGGAGCAGATTGAAGA-AAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA-CAAATC
* * * *
81131127 TTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATC
* * * * * *
81131172 TTATTTCCCTAAAGTTGCAGTGGATCAAATTAAGGTTACAAATTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AGATAACAAATC
* * *
81131223 TCATCTCCGTGAAGTTGCAGTGGAGCAGATTGAAGA-AAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA-CAAATC
* * *
81131268 TTATCTCCCTGAAGTTGCAGTGGAACA-AGTTGAA-ATTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGATAACAAATC
* * * * *
81131312 TTATTTTCCTGAAGTTGCAGTGGAACAGATTAGGGCTAAAAATTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G---AAGATAACAAATC
* * * * *
81131363 TCATATCCCTGAGGTTGCAGTGGAGCA-AGTTGAA-ATTACCAATTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGA-TAACAAATC
** **
81131408 TTATCTCCCTGAAGTTTTAGTGGAGTGGATTGAA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
81131442 ACACTAATTC
Statistics
Matches: 569, Mismatches: 116, Indels: 81
0.74 0.15 0.11
Matches are distributed among these distances:
38 31 0.05
39 1 0.00
44 104 0.18
45 233 0.41
46 6 0.01
47 36 0.06
48 3 0.01
50 5 0.01
51 150 0.26
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATC
Found at i:81130875 original size:83 final size:83
Alignment explanation
Indices: 81130715--81130867 Score: 200
Period size: 83 Copynumber: 1.8 Consensus size: 83
81130705 AGCCACTAAC
* * * * *
81130715 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGGCAAATCTTATTTCCCTAAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGACAGAAGATAGCAAATCTTATCTCCCTAAAGTTGCA
*
81130780 GTGGAACAGATTACAAAT
66 GTAGAACAGATTACAAAT
* * * *
81130798 CTTATCTCCCTGAAGTTGCAGTGGAATAGGTCAG-AGATAGCAAATCTTATCTCTCTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAACA-GACAGAAGATAGCAAATCTTATCTCCCTAAAGTTGC
81130862 AGTAGA
65 AGTAGA
81130868 GTAGATTAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
83 56 0.95
84 3 0.05
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (83 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGACAGAAGATAGCAAATCTTATCTCCCTAAAGTTGCA
GTAGAACAGATTACAAAT
Found at i:81131160 original size:192 final size:193
Alignment explanation
Indices: 81130899--81131253 Score: 545
Period size: 192 Copynumber: 1.8 Consensus size: 193
81130889 TATCTCCCTA
*
81130899 AAGTTACAGTGGAGCAGGTTGAAGTTACAACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGA
1 AAGTTACAGTGGAGCAGATTGAAG-TACAACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGA
* * *
81130964 CTAAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAAT-AGATTAAAGCTACAAATTACAA
65 CTAAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGG-ATCAAATTAAAGCTACAAATTACAA
* *
81131028 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAGGCTACAAATTACAAATCTCATCTCTTTG
129 ATCTCATCTCCCTGAAGTTGCAGTGGAACAGATTAAGGCTACAAATTACAAATCTCATCTCTTTG
* * *
81131093 AAGTTGCAGTGGAGCAGATTGAAG-A-AAGCAAGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGA
1 AAGTTACAGTGGAGCAGATTGAAGTACAA-CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGA
* *
81131156 CTAAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGATCAAATTAAGGTTACAAATTACAAA
65 CTAAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGATCAAATTAAAGCTACAAATTACAAA
* *
81131221 TCTCATCTCCGTGAAGTTGCAGTGGAGCAGATT
130 TCTCATCTCCCTGAAGTTGCAGTGGAACAGATT
81131254 GAAGAAAGCA
Statistics
Matches: 146, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
191 4 0.03
192 120 0.82
194 22 0.15
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (193 bp):
AAGTTACAGTGGAGCAGATTGAAGTACAACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGAC
TAAAGATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGATCAAATTAAAGCTACAAATTACAAAT
CTCATCTCCCTGAAGTTGCAGTGGAACAGATTAAGGCTACAAATTACAAATCTCATCTCTTTG
Found at i:81131236 original size:96 final size:93
Alignment explanation
Indices: 81130838--81131308 Score: 379
Period size: 96 Copynumber: 5.0 Consensus size: 93
81130828 TCAGAGATAG
* * * * * * *
81130838 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTA-TAAACCTTATCTCCCTAAAG
1 CAAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATCTCCCTGAAG
* *
81130902 TTACAGTGGAGCAGGTTGAAGTTAC--AA
65 TTGCAGTGGAGCAGATTGAAGTTACAAAA
* * * *
81130929 CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGAAG
1 CAAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATCTCCCTGAAG
** * *
81130994 TTGCAGTGGAATAGATTAAAGCTACAAATTA
65 TTGCAGTGGAGCAGATTGAAGTTACAAA--A
* * *
81131025 CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAGGCTACAA-ATTA-CAAATCTCATCT
1 CAAATCTTATCT-CCTGAAGTTGCAGTGGAGCAG----A--CTA-AAGA-TAGCAAATCTTATCT
** *
81131088 CTTTGAAGTTGCAGTGGAGCAGATTGAAG----AAAG
57 CCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAA
* * *
81131121 CAAGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATTTCCCTAAAG
1 CAAATCTTATC-TCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATCTCCCTGAAG
* *
81131186 TTGCAGTGGATCAAATT-AAGGTTACAAATTA
65 TTGCAGTGGAGCAGATTGAA-GTTACAAA--A
* * * * *
81131217 CAAATCTCATCTCCGTGAAGTTGCAGTGGAGCAGATTGAAGAAAGCAAGTCTTATCTCCCTGAAG
1 CAAATCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATCTCCCTGAAG
* *
81131282 TTGCAGTGGAACA-AGTTGAAATTACAA
65 TTGCAGTGGAGCAGA-TTGAAGTTACAA
81131309 GTCTTATTTT
Statistics
Matches: 302, Mismatches: 51, Indels: 49
0.75 0.13 0.12
Matches are distributed among these distances:
89 6 0.02
90 35 0.12
91 36 0.12
92 36 0.12
94 4 0.01
95 4 0.01
96 133 0.44
97 3 0.01
98 3 0.01
100 1 0.00
102 37 0.12
103 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (93 bp):
CAAATCTTATCTCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAATCTTATCTCCCTGAAGT
TGCAGTGGAGCAGATTGAAGTTACAAAA
Found at i:81133086 original size:24 final size:23
Alignment explanation
Indices: 81133044--81133095 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
81133034 ACTATTATCC
*
81133044 ATTTTAAATTTTATATATTATTT
1 ATTTTAAATATTATATATTATTT
81133067 ATTTTAAACTATTATATATTATTT
1 ATTTTAAA-TATTATATATTATTT
81133091 ATTTT
1 ATTTT
81133096 GAATTATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (23 bp):
ATTTTAAATATTATATATTATTT
Found at i:81133158 original size:26 final size:25
Alignment explanation
Indices: 81133128--81133330 Score: 121
Period size: 26 Copynumber: 8.0 Consensus size: 25
81133118 TGTCTTTTGT
*
81133128 TTTTAAACCTTTTTGTATATTATTTA
1 TTTTAAA-CTTTTTATATATTATTTA
*
81133154 TTTTAAATTTCTTTTTACATATTATTTA
1 TTTTAAA---CTTTTTATATATTATTTA
* * * **
81133182 TCTTGAACTCTTT-TATA-T-GCTA
1 TTTTAAACTTTTTATATATTATTTA
* *
81133204 TTTTAAAGTGTCTTATATATTATTTA
1 TTTTAAACT-TTTTATATATTATTTA
* *
81133230 CTTTAAA-TTGCTTTGTATATTATTTA
1 TTTTAAACTT--TTTATATATTATTTA
** * *
81133256 TTTTAATTTGTTTTACATATTAATTA
1 TTTTAAACT-TTTTATATATTATTTA
81133282 TTTTAAA-TTGTTT-TATATTATTTA
1 TTTTAAACTT-TTTATATATTATTTA
* *
81133306 CTTTAAATTGTTTTATATATTATTT
1 TTTTAAACT-TTTTATATATTATTT
81133331 TGTTTCGTTT
Statistics
Matches: 135, Mismatches: 28, Indels: 28
0.71 0.15 0.15
Matches are distributed among these distances:
22 8 0.06
23 3 0.02
24 24 0.18
25 15 0.11
26 62 0.46
27 1 0.01
28 22 0.16
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (25 bp):
TTTTAAACTTTTTATATATTATTTA
Found at i:81133249 original size:50 final size:48
Alignment explanation
Indices: 81133148--81133330 Score: 145
Period size: 50 Copynumber: 3.6 Consensus size: 48
81133138 TTTTGTATAT
* * * *
81133148 TATTTATTTTAAATTTCTTTTTACATATTATTTA-TCTTGAACT-CTTTTA
1 TATTTATTTTAAA-TT-GTTTTATATATTATTTACT-TTAAATTGCTTTTA
* * *
81133197 TATGCTATTTTAAAGTGTCTTATATATTATTTACTTTAAATTGCTTTGTATA
1 TAT-TTATTTTAAATTGTTTTATATATTATTTACTTTAAATTGC-TT-T-TA
* * * * *
81133249 TTATTTATTTTAATTTGTTTTACATATTAATTATTTTAAATTGTTTTATA
1 -TATTTATTTTAAATTGTTTTATATATTATTTACTTTAAATTGCTTT-TA
*
81133299 TTATTTACTTTAAATTGTTTTATATATTATTT
1 -TATTTATTTTAAATTGTTTTATATATTATTT
81133331 TGTTTCGTTT
Statistics
Matches: 108, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
48 19 0.18
49 6 0.06
50 43 0.40
51 3 0.03
52 34 0.31
53 3 0.03
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (48 bp):
TATTTATTTTAAATTGTTTTATATATTATTTACTTTAAATTGCTTTTA
Found at i:81133346 original size:102 final size:102
Alignment explanation
Indices: 81133139--81133330 Score: 253
Period size: 102 Copynumber: 1.9 Consensus size: 102
81133129 TTTAAACCTT
* * *
81133139 TTTGTATATTATTTATTTTAAATTTCTTTTTACATATTATTTATCTTGAACTCTTTTATATGCTA
1 TTTGTATATTATTTATTTTAAATTTCGTTTTACATATTAATTATCTTAAACTCTTTTATATGCTA
*
81133204 TTTTAAAGTGTCTTATATATTATTTACTTTAAATTGC
66 CTTTAAAGTGTCTTATATATTATTTACTTTAAATTGC
* * * **
81133241 TTTGTATATTATTTATTTT-AATTT-GTTTTACATATTAATTATTTTAAATTGTTTTATATTATT
1 TTTGTATATTATTTATTTTAAATTTCGTTTTACATATTAATTATCTTAAACTCTTTTATA-T-GC
* *
81133304 TACTTTAAATTGTTTTATATATTATTT
64 TACTTTAAAGTGTCTTATATATTATTT
81133331 TGTTTCGTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
100 28 0.36
101 6 0.08
102 43 0.56
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (102 bp):
TTTGTATATTATTTATTTTAAATTTCGTTTTACATATTAATTATCTTAAACTCTTTTATATGCTA
CTTTAAAGTGTCTTATATATTATTTACTTTAAATTGC
Found at i:81139399 original size:10 final size:11
Alignment explanation
Indices: 81139372--81139399 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
81139362 CGATCTAGTC
81139372 AGAAAAAGTGA
1 AGAAAAAGTGA
81139383 AGAAAAAGTGA
1 AGAAAAAGTGA
81139394 AGAAAA
1 AGAAAA
81139400 TTCTTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (11 bp):
AGAAAAAGTGA
Found at i:81140546 original size:60 final size:60
Alignment explanation
Indices: 81140478--81140600 Score: 228
Period size: 60 Copynumber: 2.0 Consensus size: 60
81140468 GTATTCTAAG
81140478 TGTTCAACGGGTATGTCAAGAACAAGAAAGAGTATGTTAAGTCACGAGTTGGTACAGGTA
1 TGTTCAACGGGTATGTCAAGAACAAGAAAGAGTATGTTAAGTCACGAGTTGGTACAGGTA
* *
81140538 TGTTCAACGGGTATGTTAAGAACAAGAAAGAGTATGTTAAGTCACGAGTTGGTACATGTA
1 TGTTCAACGGGTATGTCAAGAACAAGAAAGAGTATGTTAAGTCACGAGTTGGTACAGGTA
81140598 TGT
1 TGT
81140601 ACGAAAAACT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.28
Consensus pattern (60 bp):
TGTTCAACGGGTATGTCAAGAACAAGAAAGAGTATGTTAAGTCACGAGTTGGTACAGGTA
Found at i:81142296 original size:20 final size:19
Alignment explanation
Indices: 81142273--81142329 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 19
81142263 TAGTTTCTCG
81142273 AAATCCATTATTTTTTCCCC
1 AAATCCATTA-TTTTTCCCC
81142293 AAAT--A--A-TTTTCCCC
1 AAATCCATTATTTTTCCCC
*
81142307 AAATCCCTTAGTTTTTCCCC
1 AAATCCATTA-TTTTTCCCC
81142327 AAA
1 AAA
81142330 CGTCTGTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 12
0.70 0.02 0.28
Matches are distributed among these distances:
14 12 0.40
16 1 0.03
18 2 0.07
20 15 0.50
ACGTcount: A:0.30, C:0.30, G:0.02, T:0.39
Consensus pattern (19 bp):
AAATCCATTATTTTTCCCC
Found at i:81142311 original size:34 final size:34
Alignment explanation
Indices: 81142249--81142329 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
81142239 ATAGCCTTAG
* * * *
81142249 TTTTATCCCCAAATTAGTTTCTCGAAATCCATTA
1 TTTTTTCCCCAAATAAGTTTCCCCAAATCCATTA
* *
81142283 TTTTTTCCCCAAATAATTTTCCCCAAATCCCTTA
1 TTTTTTCCCCAAATAAGTTTCCCCAAATCCATTA
*
81142317 GTTTTTCCCCAAA
1 TTTTTTCCCCAAA
81142330 CGTCTGTTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.27, C:0.28, G:0.04, T:0.41
Consensus pattern (34 bp):
TTTTTTCCCCAAATAAGTTTCCCCAAATCCATTA
Found at i:81145392 original size:26 final size:26
Alignment explanation
Indices: 81145363--81145472 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
81145353 TGGTACAAAT
81145363 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
81145389 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* * *
81145415 AGATAATGGGCTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
81145441 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
81145467 TGATAA
1 TGATAA
81145473 GAATTTCATG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
26 74 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:81147135 original size:27 final size:27
Alignment explanation
Indices: 81147094--81147233 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 27
81147084 GAGGAAGCGT
*
81147094 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
81147121 TCTGGTGGCTCTGCCACAAATATTTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
81147148 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * * *
81147175 TTTGGTGGCTTTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
81147203 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
81147229 TCTGG
1 TCTGG
81147234 CAGCCATGCT
Statistics
Matches: 96, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.05
27 78 0.81
28 13 0.14
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:81147181 original size:54 final size:55
Alignment explanation
Indices: 81147094--81147233 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 55
81147084 GAGGAAGCGT
* * * *
81147094 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATTTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * * *
81147148 TCTGGTGGCTCTGCCACATATATCTGTTTTGGTGGCTTTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
81147203 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
81147234 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 56 0.76
55 18 0.24
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:81150967 original size:93 final size:94
Alignment explanation
Indices: 81150864--81151053 Score: 260
Period size: 93 Copynumber: 2.0 Consensus size: 94
81150854 AAGAACTAAA
* *
81150864 AGGCTTAAATATG-ATTATTTAATGTTTCT-AAAGGGCTCGAGGGTTAAAATTTT-TGTAATTAG
1 AGGCTTAAATA-GAATTATTTAAT-TTTCTAAAAGGGCTCGAAGGTTAAAATTTTCTGCAATTAG
* * *
81150926 ATAACCAAAATTGAAATGCTTTAAACGTTAG
64 ATAACCAAAATTGAAATACTCTAAAAGTTAG
* * * *
81150957 AGGCTTAAATAGAATTATTTAATTTTTTAAAAGGGCTTGAAGTTTAAAATTTTCTGCAATTGGAT
1 AGGCTTAAATAGAATTATTTAATTTTCTAAAAGGGCTCGAAGGTTAAAATTTTCTGCAATTAGAT
81151022 AACCAAAATTGAAATACTCTAAAAGTTAG
66 AACCAAAATTGAAATACTCTAAAAGTTAG
81151051 AGG
1 AGG
81151054 ACCATTGGTG
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
92 5 0.06
93 42 0.49
94 38 0.45
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.36
Consensus pattern (94 bp):
AGGCTTAAATAGAATTATTTAATTTTCTAAAAGGGCTCGAAGGTTAAAATTTTCTGCAATTAGAT
AACCAAAATTGAAATACTCTAAAAGTTAG
Found at i:81151830 original size:21 final size:21
Alignment explanation
Indices: 81151806--81151845 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
81151796 ACTCTTGGAA
*
81151806 GAGGAAGAGGAGGAGGAAGTG
1 GAGGAAGAAGAGGAGGAAGTG
81151827 GAGGAAGAAGAGGAGGAAG
1 GAGGAAGAAGAGGAGGAAG
81151846 AGTCGGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.55, T:0.03
Consensus pattern (21 bp):
GAGGAAGAAGAGGAGGAAGTG
Found at i:81151844 original size:12 final size:12
Alignment explanation
Indices: 81151809--81151846 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
81151799 CTTGGAAGAG
*
81151809 GAAGAGGAGGAG
1 GAAGAGGAGGAA
*
81151821 GAAGTGGAGGAA
1 GAAGAGGAGGAA
81151833 GAAGAGGAGGAA
1 GAAGAGGAGGAA
81151845 GA
1 GA
81151847 GTCGGAGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.53, T:0.03
Consensus pattern (12 bp):
GAAGAGGAGGAA
Found at i:81154017 original size:47 final size:47
Alignment explanation
Indices: 81153966--81154058 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
81153956 CATTAACCTT
* *
81153966 TGTTTTTCTTTTTCAATTTGTTTTTTTTAATAAATTTAATGAAAGTG
1 TGTTTTTCTTTATCAATTTGTTTTTTCTAATAAATTTAATGAAAGTG
81154013 TGTTTTTCTTTATCAATTTGTTTTTTCTAATAAATTTAATGAAAGT
1 TGTTTTTCTTTATCAATTTGTTTTTTCTAATAAATTTAATGAAAGT
81154059 ATGGTTAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (47 bp):
TGTTTTTCTTTATCAATTTGTTTTTTCTAATAAATTTAATGAAAGTG
Found at i:81157315 original size:26 final size:26
Alignment explanation
Indices: 81157286--81157338 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
81157276 TGAGATCCAT
81157286 TACAAATAACTTTTAAAAGTAATGTA
1 TACAAATAACTTTTAAAAGTAATGTA
81157312 TACAAATAACTTTTAAAAGTAATGTA
1 TACAAATAACTTTTAAAAGTAATGTA
81157338 T
1 T
81157339 TAACCATCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (26 bp):
TACAAATAACTTTTAAAAGTAATGTA
Found at i:81159054 original size:21 final size:21
Alignment explanation
Indices: 81159030--81159070 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81159020 AGCCAAAAAT
*
81159030 CTCTAAAAATTCTCTTTAAAG
1 CTCTAAAAATTCTCATTAAAG
* *
81159051 CTCTCAAATTTCTCATTAAA
1 CTCTAAAAATTCTCATTAAA
81159071 TTTCTCAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.22, G:0.02, T:0.39
Consensus pattern (21 bp):
CTCTAAAAATTCTCATTAAAG
Found at i:81161381 original size:26 final size:26
Alignment explanation
Indices: 81161352--81161414 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
81161342 TATTGTTTCA
81161352 TTTAATAAAAAAGAATTTTTTA-ATAT
1 TTTAATAAAAAAGAATTTTTTATAT-T
** **
81161378 TTTAATTGTAAATTAATTTTTTATATT
1 TTTAA-TAAAAAAGAATTTTTTATATT
81161405 TTTAATAAAA
1 TTTAATAAAA
81161415 TATAAATTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 8 0.28
27 19 0.66
28 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (26 bp):
TTTAATAAAAAAGAATTTTTTATATT
Found at i:81161422 original size:27 final size:27
Alignment explanation
Indices: 81161352--81161432 Score: 64
Period size: 27 Copynumber: 3.0 Consensus size: 27
81161342 TATTGTTTCA
81161352 TTTAATAAAA-A-AGAATTTTTTAATAT
1 TTTAATAAAATATA-AATTTTTTAATAT
*
81161378 TTTAATTGTAAAT-T-AATTTTTT-ATATT
1 TTTAA-T-AAAATATAAATTTTTTAATA-T
81161405 TTTAATAAAATATAAATTCTTTTGAATA
1 TTTAATAAAATATAAATT-TTTT-AATA
81161433 AGGCGGAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 16
0.70 0.03 0.26
Matches are distributed among these distances:
25 4 0.09
26 10 0.23
27 19 0.44
28 7 0.16
30 3 0.07
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (27 bp):
TTTAATAAAATATAAATTTTTTAATAT
Found at i:81163435 original size:49 final size:49
Alignment explanation
Indices: 81163278--81163454 Score: 187
Period size: 49 Copynumber: 3.6 Consensus size: 49
81163268 GATAAGATGC
* *
81163278 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGT
1 CAATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCAATGT
* * * * *
81163326 CAATGCCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCAATGC
1 CAATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAATGT
* * * * **
81163375 CGACGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CAATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAATGT
* * *
81163424 TAATGCTATGTCCCAGACGGGTCTTACACTG
1 CAATGCCATGTCCCAGACAGGTCTTACACTG
81163455 ACACACAACA
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
47 16 0.15
48 18 0.17
49 72 0.68
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
CAATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAATGT
Found at i:81163447 original size:98 final size:91
Alignment explanation
Indices: 81163282--81163496 Score: 225
Period size: 98 Copynumber: 2.3 Consensus size: 91
81163272 AGATGCCAAT
* *
81163282 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCAGATAGG
1 GCCATGTCCCAGATA-GGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCAGACAGG
* *
81163347 TCTTACACTGACTTTCATATATCAATGCCGAC
65 TCTTACACTGAC--ACACA-A-CAA-GCCGAC
** *** * * *
81163379 GCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGTGTTAATGCTATGTCCCAGACGG
1 GCCATGTCCCAGATAGGTCTTACACTGGCTAGCA-C-ATCAAAGTCAATGCCATGTCCCAGACAG
*
81163444 GTCTTACACTGACACACAACAAGCTGAC
64 GTCTTACACTGACACACAACAAGCCGAC
*
81163472 GCCAT-TCCCAGATAGGTCTAACACT
1 GCCATGTCCCAGATAGGTCTTACACT
81163497 AGCTTGTATA
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
92 19 0.19
93 10 0.10
94 3 0.03
95 1 0.01
96 20 0.20
97 15 0.15
98 34 0.33
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (91 bp):
GCCATGTCCCAGATAGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCAGACAGGT
CTTACACTGACACACAACAAGCCGAC
Found at i:81163584 original size:46 final size:44
Alignment explanation
Indices: 81163517--81163637 Score: 138
Period size: 46 Copynumber: 2.7 Consensus size: 44
81163507 TCTCGAGGCT
* *
81163517 GATGTATGTCCCAGACATGTCTTACACT-AGCTCTCGTGTCAATGT-C
1 GATGCATGTCCCAGACATGTCTTACACTGA-CTCT--TAT-AATGTAC
* *
81163563 GATGCATGTCCTAGACGTGTCTTACACTGACTCTTATAATGTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTCTTATAATGTA--C
81163609 GATGCATGTCCCAGACATGTCTTACACTG
1 GATGCATGTCCCAGACATGTCTTACACTG
81163638 GCACACATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 5 0.08
44 2 0.03
46 57 0.88
47 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTCTTATAATGTAC
Found at i:81168421 original size:17 final size:17
Alignment explanation
Indices: 81168399--81168432 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81168389 ATAGATTCGC
*
81168399 TTAGATACACTTAGTAT
1 TTAGATACAATTAGTAT
*
81168416 TTAGATATAATTAGTAT
1 TTAGATACAATTAGTAT
81168433 AATATACGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (17 bp):
TTAGATACAATTAGTAT
Found at i:81169266 original size:31 final size:31
Alignment explanation
Indices: 81169228--81169307 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
81169218 TGTTTAACGG
*
81169228 TTACTGGGCCGAAGCCTTATCATAAATTATA
1 TTACTGGGCCGAAGCCTTATCATAAATCATA
*
81169259 TTACTGGGCCGAAGCCTTTTCATAAATCATA
1 TTACTGGGCCGAAGCCTTATCATAAATCATA
* *
81169290 TCATTGGGCCGAAGCCTT
1 TTACTGGGCCGAAGCCTT
81169308 TACTGTAAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (31 bp):
TTACTGGGCCGAAGCCTTATCATAAATCATA
Done.