Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 248 of 356
Found at i:81468337 original size:7 final size:7
Alignment explanation
Indices: 81468325--81468366 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
81468315 TAATGAAACA
81468325 GCCCGTT
1 GCCCGTT
81468332 GCCCGTT
1 GCCCGTT
81468339 GCCCGTT
1 GCCCGTT
81468346 GCCCGTT
1 GCCCGTT
81468353 GCCCGTT
1 GCCCGTT
81468360 GCCCGTT
1 GCCCGTT
81468367 AATTAGGAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.00, C:0.43, G:0.29, T:0.29
Consensus pattern (7 bp):
GCCCGTT
Found at i:81468551 original size:11 final size:10
Alignment explanation
Indices: 81468519--81468578 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
81468509 AACCTTTAAA
*
81468519 AATATTTTTT
1 AATAATTTTT
*
81468529 TATAATTCTTT
1 AATAATT-TTT
81468540 AATAATATTTT
1 AATAAT-TTTT
81468551 AAT-ATTTTT
1 AATAATTTTT
*
81468560 TA-AATTTTT
1 AATAATTTTT
81468569 AATAATTTTT
1 AATAATTTTT
81468579 TTATTTTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 12 0.29
10 14 0.34
11 14 0.34
12 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (10 bp):
AATAATTTTT
Found at i:81468562 original size:10 final size:11
Alignment explanation
Indices: 81468522--81468579 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
81468512 CTTTAAAAAT
*
81468522 ATTTTTTTATA
1 ATTTTTTAATA
*
81468533 ATTCTTTAATA
1 ATTTTTTAATA
*
81468544 ATATTTTAAT-
1 ATTTTTTAATA
81468554 ATTTTTT-A-A
1 ATTTTTTAATA
81468563 A-TTTTTAATA
1 ATTTTTTAATA
81468573 ATTTTTT
1 ATTTTTT
81468580 TATTTTTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
8 5 0.13
9 3 0.08
10 8 0.21
11 22 0.58
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (11 bp):
ATTTTTTAATA
Found at i:81468570 original size:18 final size:17
Alignment explanation
Indices: 81468542--81468592 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
81468532 AATTCTTTAA
81468542 TAATATTTTAATATTTTT
1 TAAT-TTTTAATATTTTT
81468560 TAAATTTTTAATAATTTTT
1 T-AATTTTTAAT-ATTTTT
*
81468579 TTATTTTTATATAT
1 TAATTTTTA-ATAT
81468593 AGAAAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 17 0.59
19 12 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TAATTTTTAATATTTTT
Found at i:81468570 original size:29 final size:30
Alignment explanation
Indices: 81468519--81468591 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 30
81468509 AACCTTTAAA
81468519 AATATTTTTTTATAATTCTTTAATAATATTTT
1 AATA-TTTTTTATAATTCTTTAATAAT-TTTT
81468551 AATATTTTTTA-AATT-TTTAATAATTTTT
1 AATATTTTTTATAATTCTTTAATAATTTTT
*
81468579 -TTATTTTTATATA
1 AATATTTTT-TATA
81468592 TAGAAAATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 7 0.18
28 6 0.16
29 10 0.26
30 4 0.11
31 7 0.18
32 4 0.11
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (30 bp):
AATATTTTTTATAATTCTTTAATAATTTTT
Found at i:81469925 original size:16 final size:16
Alignment explanation
Indices: 81469906--81469940 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
81469896 TATTATAATA
81469906 TTATATTTTAAAATTT
1 TTATATTTTAAAATTT
* *
81469922 TTATGTTTTATAATTT
1 TTATATTTTAAAATTT
81469938 TTA
1 TTA
81469941 GTAAGCATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
TTATATTTTAAAATTT
Found at i:81470265 original size:26 final size:25
Alignment explanation
Indices: 81470224--81470277 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
81470214 GAGAGAAAAT
*
81470224 AAAAAAACATAAAAAATTATCAAAC
1 AAAAAAACATAAAAAATCATCAAAC
* *
81470249 AAAAAAATATAAAAAAATCATCAACC
1 AAAAAAACAT-AAAAAATCATCAAAC
81470275 AAA
1 AAA
81470278 TTCAGAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.72, C:0.13, G:0.00, T:0.15
Consensus pattern (25 bp):
AAAAAAACATAAAAAATCATCAAAC
Found at i:81476466 original size:42 final size:42
Alignment explanation
Indices: 81476407--81476491 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
81476397 CTGCGTATAC
81476407 CTGTCGAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
1 CTGTCGAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
81476449 CTGTCGAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
1 CTGTCGAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
81476491 C
1 C
81476492 AAGTACCAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (42 bp):
CTGTCGAGAACCAACACCAATTTTATCCAATAATAAGTGAAT
Found at i:81478192 original size:44 final size:44
Alignment explanation
Indices: 81478144--81478234 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
81478134 ATATGTCAAA
81478144 TAATATTAAAATAACCTACACTAATCAAAGCTTAAGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGCTTAAGTGGGAAAC
* * * *
81478188 TAATATTAAAATAACCTATACTGATCAGAGTTTAAGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGCTTAAGTGGGAAAC
81478232 TAA
1 TAA
81478235 AAATATAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.27
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAAAGCTTAAGTGGGAAAC
Found at i:81480088 original size:21 final size:21
Alignment explanation
Indices: 81480064--81480104 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81480054 TAAATCCTAA
81480064 AGATACTAATAATATAATAAT
1 AGATACTAATAATATAATAAT
* *
81480085 AGATACTAATACTATCATAA
1 AGATACTAATAATATAATAA
81480105 CAAAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.32
Consensus pattern (21 bp):
AGATACTAATAATATAATAAT
Found at i:81482535 original size:20 final size:20
Alignment explanation
Indices: 81482512--81482606 Score: 56
Period size: 20 Copynumber: 4.8 Consensus size: 20
81482502 TTTTTCACTT
81482512 TTTATTCTATATTTTCTTTA
1 TTTATTCTATATTTTCTTTA
***
81482532 TTTATT-TAGTATTTTGAATA
1 TTTATTCTA-TATTTTCTTTA
* *
81482552 TTTATTCTTAAATTTCTTTTTA
1 TTTATTC-TATATTT-TCTTTA
* *
81482574 TTTTATT-T-TATTTTATTTG
1 -TTTATTCTATATTTTCTTTA
81482593 TTT-TTCT-TATTTTC
1 TTTATTCTATATTTTC
81482607 CTAAATCTAT
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
17 2 0.03
18 10 0.17
19 6 0.10
20 24 0.41
21 5 0.09
22 5 0.09
23 6 0.10
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTATTCTATATTTTCTTTA
Found at i:81492304 original size:46 final size:46
Alignment explanation
Indices: 81492255--81492419 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 46
81492245 TTGGGCATCT
*
81492255 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
81492301 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCC
* * * *
81492348 GAGCTCGTTGAATTGAGTCCGATTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
81492394 GAACTCGTTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
81492420 GTGAGATGTA
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 52 0.54
47 25 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
Found at i:81492358 original size:93 final size:93
Alignment explanation
Indices: 81492248--81492474 Score: 373
Period size: 93 Copynumber: 2.4 Consensus size: 93
81492238 CGGATATTTG
* * * *
81492248 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
81492313 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
81492341 GGCATCCGAGCTCGTTGAATTGAGTCCGATTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
81492406 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
81492434 GGCATCCGAGCTCGTTGAGTTGAGTCCTAATTCGCTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGG
81492475 GCGGGTTACA
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 124 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:81492450 original size:47 final size:47
Alignment explanation
Indices: 81492304--81492460 Score: 189
Period size: 47 Copynumber: 3.4 Consensus size: 47
81492294 AACGTCTGAA
81492304 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
* * * * * *
81492351 CTCGTTGAATTGAGTCCGATTTCACTTATGGATGCGAA-T--G--TCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAG
81492397 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
81492444 CTCGTTGAGTTGAGTCC
1 CTCGTTGAGTTGAGTCC
81492461 TAATTCGCTT
Statistics
Matches: 89, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.06
45 3 0.03
46 26 0.29
47 43 0.48
48 3 0.03
50 5 0.06
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
Found at i:81494858 original size:16 final size:15
Alignment explanation
Indices: 81494830--81494891 Score: 58
Period size: 16 Copynumber: 4.1 Consensus size: 15
81494820 AATAATAAAT
81494830 AAATAAATAAAATGA
1 AAATAAATAAAATGA
81494845 AAATAAATTAAAATGA
1 AAATAAA-TAAAATGA
**
81494861 ATGTATAATAAAA-GA
1 AAATA-AATAAAATGA
81494876 AAGA-AAA-AAAATGA
1 AA-ATAAATAAAATGA
81494890 AA
1 AA
81494892 GTGGAGGCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 11 0.28
16 16 0.41
17 2 0.05
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (15 bp):
AAATAAATAAAATGA
Found at i:81495661 original size:25 final size:25
Alignment explanation
Indices: 81495613--81495661 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
81495603 CATAACTGAA
* * *
81495613 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
81495638 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
81495662 GTGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:81502175 original size:15 final size:16
Alignment explanation
Indices: 81502157--81502187 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81502147 TTAAAAAAGC
81502157 TTCA-TGAATAAAAAA
1 TTCATTGAATAAAAAA
81502172 TTCATTGAATAAAAAA
1 TTCATTGAATAAAAAA
81502188 ATTATCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.29
Consensus pattern (16 bp):
TTCATTGAATAAAAAA
Found at i:81504281 original size:22 final size:22
Alignment explanation
Indices: 81504239--81504281 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81504229 TTTTTTTATG
* *
81504239 TTTATTTTCTTTTAGTTAAATA
1 TTTATTTTATTTTAGTCAAATA
81504261 TTTATTTTATTTATA-TCAAAT
1 TTTATTTTATTT-TAGTCAAAT
81504282 TTTCAAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTATTTTATTTTAGTCAAATA
Found at i:81504638 original size:11 final size:11
Alignment explanation
Indices: 81504600--81504643 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 11
81504590 ATATTATTTT
81504600 AAATTAATTAA
1 AAATTAATTAA
81504611 AAATATAAGATTTAA
1 AAAT-T-A-A-TTAA
81504626 AAATTAATTAA
1 AAATTAATTAA
81504637 AAATTAA
1 AAATTAA
81504644 ACATGTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
11 15 0.52
12 2 0.07
13 2 0.07
14 2 0.07
15 8 0.28
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
AAATTAATTAA
Found at i:81504652 original size:26 final size:26
Alignment explanation
Indices: 81504600--81504653 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
81504590 ATATTATTTT
* *
81504600 AAATTAATTAAAAATATAAGATTTAA
1 AAATTAATTAAAAATATAACATGTAA
81504626 AAATTAATTAAAAAT-TAAACATGTAA
1 AAATTAATTAAAAATAT-AACATGTAA
81504652 AA
1 AA
81504654 CTACATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (26 bp):
AAATTAATTAAAAATATAACATGTAA
Found at i:81506850 original size:8 final size:8
Alignment explanation
Indices: 81506837--81506876 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
81506827 GAGCGTACTC
81506837 TTTTTTAT
1 TTTTTTAT
81506845 TTTTTTAT
1 TTTTTTAT
*
81506853 TTTTATGAT
1 TTTT-TTAT
81506862 TTTTTTAT
1 TTTTTTAT
81506870 CTTTTTT
1 -TTTTTT
81506877 TAAAAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 15 0.54
9 13 0.46
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTTTAT
Found at i:81507504 original size:789 final size:787
Alignment explanation
Indices: 81506081--81507653 Score: 2949
Period size: 789 Copynumber: 2.0 Consensus size: 787
81506071 CAGGATAATT
*
81506081 TTTTTGTTTAAAAAAGAAACAAGATCGGATTGGAAACTGCCTAAAAGCGGAGGGACTAGGGTAGC
1 TTTTTGTTAAAAAAAGAAACAAGATCGGATTGGAAACTGCCTAAAAGCGGAGGGACTAGGGTAGC
81506146 AATTATACCCTAGTCACTAAACACGTGGATCCTGTCTGATAAACAGGTCGGGTTTCGGGTCAACA
66 AATTATACCCTAGTCACTAAACACGTGGATCCTGTCTGATAAACAGGTCGGGTTTCGGGTCAACA
81506211 GAGATGACACCGTTTCAGGCATTCGTCTCTTAAAATGGTCTAGGGACCAAAATGAAAGTAAAATG
131 GAGATGACACCGTTTCAGGCATTCGTCTCTTAAAATGGTCTAGGGACCAAAATGAAAGTAAAATG
81506276 AAGTACAATGGCAAAATAAAAAAAATAAAAAAATAAAAATTAAGATAGAACTAGATTGAAACAAA
196 AAGTACAATGGCAAAATAAAAAAAATAAAAAAATAAAAATTAAGATAGAACTAGATTGAAACAAA
* *
81506341 CCACAAAATCGAAAGGACCAAAGGCGTAAATAAACCCCTTTACAAAAACATGTGGATCCCAGGGG
261 CCACAAAATCGAAAGGACCAAAGGCGCAAATAAACCCCTTTACAAAAACATGTGGATCCCAAGGG
*
81506406 ATCCAGGTTGGCCCCAAAATGTGTTCAGGCCATCCAAAAACGATGTCGTTTTGGTGCCTTATTTA
326 ATCCAGGTTGGCCCCAAAATGTGTTCAGGCCATCCAAAAACGATGCCGTTTTGGTGCCTTATTTA
81506471 AATAAAAAAATTTCCAAAAAAAACTCATTTCAACCATATTTAAAAAAAAAACCTAAAAAAAACAA
391 AATAAAAAAATTTCCAAAAAAAACTCATTTCAACCATATTTAAAAAAAAAACCTAAAAAAAACAA
*
81506536 CCCCTCTTTTCTCTCAACAGCCCAGGATCCGGCCGAAGGGGCCATTGTGCTCCACTAAGATAGCC
456 CCCCTCTTTTCTCTCAACAGCCCAGGATCCGGCCGAAGGGGCCACTGTGCTCCACTAAGATAGCC
81506601 GCTGGTCGTTGACGATGGCTTCGCTATCCACGGTGGTCGGCAAAATATAAAAAAGGCCCTTTTTG
521 GCTGGTCGTTGACGATGGCTTCGCTATCCACGGTGGTCGGCAAAATATAAAAAAGGCCCTTTTTG
81506666 ATCGTCTTAGCCTCTTGAACTTAGATCGGAACTTGCCTTTTCAAAAAAAAA-CCCCAAATTGCAG
586 ATCGTCTTAGCCTCTTGAACTTAGATCGGAACTTGCCTTTTCAAAAAAAAACCCCCAAATTGCAG
* *
81506730 AAATCACGAAGAAACCCTTCGATTTTTTTTTTAAAAAAAAAACTCTTGTCAAACCACCTATCATC
651 AAATCACGAAGAAACCCTTCAATTTTTTTTTT----AAAAAACTCTCGTCAAACCACCTATCATC
*
81506795 GGAGGTGATGGCCTTGTCTACCTACGATGGCAGAGCGTACTCTTTTTTATTTTTTTATTTTTATG
712 GGAGGTGATGGCCTCGTCTACCTACGATGGCAGAGCGTACTCTTTTTTATTTTTTTATTTTTATG
81506860 ATTTTTTTATC
777 ATTTTTTTATC
81506871 TTTTT-TTAAAAAAAGAAACAAGATCGGATTGGAAACTGCCTAAAAGCGGAGGGACTAGGGTAGC
1 TTTTTGTTAAAAAAAGAAACAAGATCGGATTGGAAACTGCCTAAAAGCGGAGGGACTAGGGTAGC
81506935 AATTATACCCTAGTCACTAAACACGTGGATCCTGTCTGATAAACAGGTCGGGTTTCGGGTCAACA
66 AATTATACCCTAGTCACTAAACACGTGGATCCTGTCTGATAAACAGGTCGGGTTTCGGGTCAACA
81507000 GAGATGACACCGTTTCAGGCATTCGTCTCTTAAAATGGTCTAGGGACCAAAATGAAAGTAAAATG
131 GAGATGACACCGTTTCAGGCATTCGTCTCTTAAAATGGTCTAGGGACCAAAATGAAAGTAAAATG
81507065 AAGTACAATGGCAAAAT-AAAAAAAT-AAAAAATAAAAATTAAGATAGAACTAGATTGAAACAAA
196 AAGTACAATGGCAAAATAAAAAAAATAAAAAAATAAAAATTAAGATAGAACTAGATTGAAACAAA
81507128 CCACAAAATCGAAAGGACCAAAGGCGCAAATAAACCCCTTTACAAAAACATGTGGATCCCAAGGG
261 CCACAAAATCGAAAGGACCAAAGGCGCAAATAAACCCCTTTACAAAAACATGTGGATCCCAAGGG
81507193 ATCCAGGTTGGCCCCAAAATGTGTTCAGGCCATCCAAAAACGATGCCGTTTTGGTGCCTTATTTA
326 ATCCAGGTTGGCCCCAAAATGTGTTCAGGCCATCCAAAAACGATGCCGTTTTGGTGCCTTATTTA
*
81507258 AATAAAAAAATTTCCAAAAAAAAAAACTCATTTCAGCCATATTT-AAAAAAAAACCTAAAAAAAA
391 AATAAAAAAATTTCC---AAAAAAAACTCATTTCAACCATATTTAAAAAAAAAACCT-AAAAAAA
81507322 ACAACCCCTCTTTTCTCTCAACAGCCCAGGATCCGGCCGAAGGGGCCACTGTGCTCCACTAAGAT
452 ACAACCCCTCTTTTCTCTCAACAGCCCAGGATCCGGCCGAAGGGGCCACTGTGCTCCACTAAGAT
81507387 AGCCGCTGGTCGTTGACGATGGCTTCGCTATCCACGGTGGTCGGCAAAATATAAAAAAGGCCCTT
517 AGCCGCTGGTCGTTGACGATGGCTTCGCTATCCACGGTGGTCGGCAAAATATAAAAAAGGCCCTT
81507452 TTTGATCGTCTTAGCCTCTTGAACTTAGATCGGAACTTGCCTTTTCAAAAAAAAAACCCCCAAAT
582 TTTGATCGTCTTAGCCTCTTGAACTTAGATCGGAACTTGCCTTTTC-AAAAAAAAACCCCCAAAT
81507517 TGCAGAAATCACGAAGAAACCCTTCAATTTTTTTTTTAAAAAACTCTCGTCAAACCACCTATCAT
646 TGCAGAAATCACGAAGAAACCCTTCAATTTTTTTTTTAAAAAACTCTCGTCAAACCACCTATCAT
81507582 CGGAGGTGATGGCCTCGTCTACCTACGATGGCAGAGCGTACTCTTTTTTATTTTTTTATTTTTAT
711 CGGAGGTGATGGCCTCGTCTACCTACGATGGCAGAGCGTACTCTTTTTTATTTTTTTATTTTTAT
81507647 GATTTTT
776 GATTTTT
81507654 AAATGTATAA
Statistics
Matches: 768, Mismatches: 9, Indels: 14
0.97 0.01 0.02
Matches are distributed among these distances:
787 180 0.23
788 106 0.14
789 217 0.28
790 212 0.28
791 9 0.01
792 44 0.06
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (787 bp):
TTTTTGTTAAAAAAAGAAACAAGATCGGATTGGAAACTGCCTAAAAGCGGAGGGACTAGGGTAGC
AATTATACCCTAGTCACTAAACACGTGGATCCTGTCTGATAAACAGGTCGGGTTTCGGGTCAACA
GAGATGACACCGTTTCAGGCATTCGTCTCTTAAAATGGTCTAGGGACCAAAATGAAAGTAAAATG
AAGTACAATGGCAAAATAAAAAAAATAAAAAAATAAAAATTAAGATAGAACTAGATTGAAACAAA
CCACAAAATCGAAAGGACCAAAGGCGCAAATAAACCCCTTTACAAAAACATGTGGATCCCAAGGG
ATCCAGGTTGGCCCCAAAATGTGTTCAGGCCATCCAAAAACGATGCCGTTTTGGTGCCTTATTTA
AATAAAAAAATTTCCAAAAAAAACTCATTTCAACCATATTTAAAAAAAAAACCTAAAAAAAACAA
CCCCTCTTTTCTCTCAACAGCCCAGGATCCGGCCGAAGGGGCCACTGTGCTCCACTAAGATAGCC
GCTGGTCGTTGACGATGGCTTCGCTATCCACGGTGGTCGGCAAAATATAAAAAAGGCCCTTTTTG
ATCGTCTTAGCCTCTTGAACTTAGATCGGAACTTGCCTTTTCAAAAAAAAACCCCCAAATTGCAG
AAATCACGAAGAAACCCTTCAATTTTTTTTTTAAAAAACTCTCGTCAAACCACCTATCATCGGAG
GTGATGGCCTCGTCTACCTACGATGGCAGAGCGTACTCTTTTTTATTTTTTTATTTTTATGATTT
TTTTATC
Found at i:81510328 original size:32 final size:33
Alignment explanation
Indices: 81510269--81510380 Score: 120
Period size: 33 Copynumber: 3.4 Consensus size: 33
81510259 GTATTATTGC
* * **
81510269 TTACTGATACTGTGATGGGCTAAGGCCCTACTG
1 TTACTGTTACTGAGATAAGCTAAGGCCCTACTG
*
81510302 TTACTGTTACTGA-ATAAGCTAAGGCCCTACTAC
1 TTACTGTTACTGAGATAAGCTAAGGCCCTACT-G
* *
81510335 TTAC-GGTACTGAGATGAGCTAAGGCCCATACTG
1 TTACTGTTACTGAGATAAGCTAAGGCCC-TACTG
*
81510368 GTACTGTTACTGA
1 TTACTGTTACTGA
81510381 TACTAAAAAG
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
32 23 0.35
33 31 0.48
34 11 0.17
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (33 bp):
TTACTGTTACTGAGATAAGCTAAGGCCCTACTG
Found at i:81511069 original size:45 final size:44
Alignment explanation
Indices: 81510978--81511084 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 44
81510968 TTACATTAAT
* * * *
81510978 TTCAGGGAGATAAGGTTTGTAGCATTAATATGCTCTACTGCAAC
1 TTCAGAGAGATAAGATTTGTAGCATTAATATGCTCCACAGCAAC
* *
81511022 TTCAGAGAGATAAGATTTGCTATC-TTCAATCTGCTCCACAGCAAC
1 TTCAGAGAGATAAGATTTG-TAGCATT-AATATGCTCCACAGCAAC
81511067 TTCAGAGAGATAAGATTT
1 TTCAGAGAGATAAGATTT
81511085 ACCATGATAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
44 19 0.35
45 36 0.65
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31
Consensus pattern (44 bp):
TTCAGAGAGATAAGATTTGTAGCATTAATATGCTCCACAGCAAC
Found at i:81514043 original size:44 final size:42
Alignment explanation
Indices: 81513994--81514148 Score: 181
Period size: 43 Copynumber: 3.6 Consensus size: 42
81513984 TATTCTCGTT
*
81513994 TAAGACCACGTTTGGGACATTGGCATCGACTTATGATTTACGTG
1 TAAGACCACGTCTGGGACATTGGCATCGA-TT-TGATTTACGTG
81514038 TAAGACCACGTCTGGGACATTGGCATCGTATTTGATTT-CGTG
1 TAAGACCACGTCTGGGACATTGGCATCG-ATTTGATTTACGTG
* * * * *
81514080 TAAGACC-CTGTCTCGGATAGTGGCATCAATATTTGA-TTACATG
1 TAAGACCAC-GTCTGGGACATTGGCATC--GATTTGATTTACGTG
81514123 TAAGACCACGTCTGGGACATTGGCAT
1 TAAGACCACGTCTGGGACATTGGCAT
81514149 TGTGCCAGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 36 0.38
44 30 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATTGGCATCGATTTGATTTACGTG
Found at i:81520955 original size:9 final size:9
Alignment explanation
Indices: 81520941--81520965 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
81520931 GACTAAAATG
81520941 TGAAATAAA
1 TGAAATAAA
81520950 TGAAATAAA
1 TGAAATAAA
81520959 TGAAATA
1 TGAAATA
81520966 TGTGGGCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:81521553 original size:42 final size:43
Alignment explanation
Indices: 81521451--81521607 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
81521441 TGTGTTCTCG
* * * *
81521451 TGTAAGACCACGTATGGGATGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATCTGA-TTACA
* * *
81521495 TGTAAGACCACATCTGGGACGTTGGCATCG-TATCTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATCTGATTACA
* *
81521537 TGTAAGAACC-TGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAG-ACCACGTCTGGGAC-GTTGGCATCGATATCTGATTACA
*
81521580 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
81521608 TGTACCAGCT
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
42 31 0.33
43 37 0.39
44 27 0.28
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATCTGATTACA
Found at i:81528829 original size:13 final size:13
Alignment explanation
Indices: 81528811--81528836 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81528801 CAACTAGAAC
81528811 AAAAATAAAATAA
1 AAAAATAAAATAA
81528824 AAAAATAAAATAA
1 AAAAATAAAATAA
81528837 CGATGACGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATAAAATAA
Found at i:81531720 original size:39 final size:39
Alignment explanation
Indices: 81531670--81531941 Score: 436
Period size: 39 Copynumber: 7.0 Consensus size: 39
81531660 ATTATATTAT
* *
81531670 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
81531709 CAGCATGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
81531748 CAGCACGAAGCCTGCGGGAATTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
81531787 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
81531826 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
81531865 CAACACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
81531904 CAGAACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
81531942 TCAGTGTCTT
Statistics
Matches: 216, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 216 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:81534182 original size:16 final size:15
Alignment explanation
Indices: 81534156--81534185 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81534146 GACTCTGGAC
81534156 TATTTTTATTTTATA
1 TATTTTTATTTTATA
81534171 TATTTATTATTTTAT
1 TATTT-TTATTTTAT
81534186 TTTGGGCAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TATTTTTATTTTATA
Found at i:81535593 original size:15 final size:17
Alignment explanation
Indices: 81535573--81535604 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
81535563 ACCACATTAA
81535573 CAAAAA-TAAAA-ATTT
1 CAAAAAGTAAAATATTT
81535588 CAAAAAGTAAAATATTT
1 CAAAAAGTAAAATATTT
81535605 TAAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.28
Consensus pattern (17 bp):
CAAAAAGTAAAATATTT
Found at i:81536053 original size:9 final size:9
Alignment explanation
Indices: 81536041--81536101 Score: 54
Period size: 10 Copynumber: 6.6 Consensus size: 9
81536031 AAAAATTATT
81536041 TTTTATAAA
1 TTTTATAAA
81536050 TTTTATAAAA
1 TTTTAT-AAA
*
81536060 TTTTAT-GA
1 TTTTATAAA
*
81536068 TTTTAATGAA
1 TTTT-ATAAA
81536078 TTTCTA-ATAA
1 TTT-TATA-AA
81536088 TTTTATAAA
1 TTTTATAAA
81536097 TTTTA
1 TTTTA
81536102 ATTTTTTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
8 5 0.12
9 17 0.40
10 20 0.47
11 1 0.02
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (9 bp):
TTTTATAAA
Found at i:81536072 original size:18 final size:19
Alignment explanation
Indices: 81536049--81536130 Score: 57
Period size: 18 Copynumber: 4.5 Consensus size: 19
81536039 TTTTTTATAA
81536049 ATTTTATAAAATTTT-ATG
1 ATTTTATAAAATTTTAATG
* *
81536067 ATTTTA-ATGAATTTCTAATA
1 ATTTTATA-AAATTT-TAATG
81536087 ATTTTAT-AAATTTTAAT-
1 ATTTTATAAAATTTTAATG
* * *
81536104 TTTTTAT-AATTTTTTATG
1 ATTTTATAAAATTTTAATG
*
81536122 CTTTTATAA
1 ATTTTATAA
81536131 TTCTAGAATG
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
17 15 0.29
18 21 0.41
19 7 0.14
20 8 0.16
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (19 bp):
ATTTTATAAAATTTTAATG
Found at i:81536113 original size:28 final size:28
Alignment explanation
Indices: 81536049--81536113 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
81536039 TTTTTTATAA
*
81536049 ATTTTATAA-AATTTTATGATTTTAATG
1 ATTTTATAATAATTTTATAATTTTAATG
* *
81536076 AATTTCTAATAATTTTATAAATTTTAAT-
1 ATTTTATAATAATTTTAT-AATTTTAATG
*
81536104 TTTTTATAAT
1 ATTTTATAAT
81536114 TTTTTATGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 7 0.23
28 15 0.50
29 8 0.27
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (28 bp):
ATTTTATAATAATTTTATAATTTTAATG
Found at i:81536116 original size:9 final size:9
Alignment explanation
Indices: 81536040--81536117 Score: 52
Period size: 9 Copynumber: 8.6 Consensus size: 9
81536030 AAAAAATTAT
81536040 TTTTTATAA
1 TTTTTATAA
*
81536049 ATTTTATAAA
1 TTTTTAT-AA
* *
81536059 ATTTTATGA
1 TTTTTATAA
*
81536068 TTTTAATGAA
1 TTTTTAT-AA
*
81536078 TTTCTAATAA
1 TTT-TTATAA
81536088 -TTTTATAA
1 TTTTTATAA
* *
81536096 ATTTTA-AT
1 TTTTTATAA
81536104 TTTTTATAA
1 TTTTTATAA
81536113 TTTTT
1 TTTTT
81536118 TATGCTTTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
8 11 0.20
9 25 0.45
10 15 0.27
11 4 0.07
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:81536117 original size:17 final size:18
Alignment explanation
Indices: 81536088--81536132 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
81536078 TTTCTAATAA
* *
81536088 TTTTATAAATTTTAAT-T
1 TTTTATAATTTTTAATGC
*
81536105 TTTTATAATTTTTTATGC
1 TTTTATAATTTTTAATGC
81536123 TTTTATAATT
1 TTTTATAATT
81536133 CTAGAATGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTATAATTTTTAATGC
Found at i:81536688 original size:20 final size:21
Alignment explanation
Indices: 81536657--81536700 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
81536647 TCATTCATAA
*
81536657 TATTATAAAAAATTATAAAAT
1 TATTATAAAAAATAATAAAAT
*
81536678 TATTA-AAAAAATAATTAAAT
1 TATTATAAAAAATAATAAAAT
81536698 TAT
1 TAT
81536701 AAGAATTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TATTATAAAAAATAATAAAAT
Found at i:81537726 original size:22 final size:23
Alignment explanation
Indices: 81537701--81537746 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
81537691 CAACCAAATC
81537701 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
81537723 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
81537746 A
1 A
81537747 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:81537752 original size:23 final size:23
Alignment explanation
Indices: 81537708--81537752 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
81537698 ATCAATTCAA
*
81537708 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
81537731 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
81537753 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:81542673 original size:26 final size:26
Alignment explanation
Indices: 81542640--81542727 Score: 140
Period size: 26 Copynumber: 3.4 Consensus size: 26
81542630 CCCCACATGG
81542640 CCTGGCACACCCGTATGTCTCACAAA
1 CCTGGCACACCCGTATGTCTCACAAA
*
81542666 CCTGGCACACCTGTATGTCTCACAAA
1 CCTGGCACACCCGTATGTCTCACAAA
* *
81542692 CCTGGCACACCCGTATGTCCCACAAG
1 CCTGGCACACCCGTATGTCTCACAAA
*
81542718 CCTGACACAC
1 CCTGGCACAC
81542728 GCTTGTGTCA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.26, C:0.40, G:0.16, T:0.18
Consensus pattern (26 bp):
CCTGGCACACCCGTATGTCTCACAAA
Found at i:81544131 original size:43 final size:42
Alignment explanation
Indices: 81544021--81544138 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 42
81544011 GACTTCTGTT
*
81544021 TTACGTGTAAGACCATGTCTGGGACACCGGCATCGTATCTGA
1 TTACGTGTAAGACCATGTCTAGGACACCGGCATCGTATCTGA
* ** ** * *
81544063 TTTCGTGTAAGACTTTGTCTAGGACAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCATGTCTAGGACACCGGCATCG-TATCTGA
* * * *
81544106 TTACATGTAAGACCACGTCTTGGACATCGGCAT
1 TTACGTGTAAGACCATGTCTAGGACACCGGCAT
81544139 TGCATATGCT
Statistics
Matches: 59, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 29 0.49
43 30 0.51
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTAGGACACCGGCATCGTATCTGA
Found at i:81546594 original size:27 final size:27
Alignment explanation
Indices: 81546556--81546621 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
81546546 ACTGTTAGTA
* *
81546556 CATGTACGCGAACACT-CATGCAAACCC
1 CATGTATGCGAACAATCCATGCAAA-CC
81546583 CATGTATGCGAACAATCCATGCAAACC
1 CATGTATGCGAACAATCCATGCAAACC
81546610 CATGTATGCGAA
1 CATGTATGCGAA
81546622 TCCCCTTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 28 0.78
28 8 0.22
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.18
Consensus pattern (27 bp):
CATGTATGCGAACAATCCATGCAAACC
Found at i:81546699 original size:23 final size:23
Alignment explanation
Indices: 81546673--81546718 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
81546663 AACCCTTATC
81546673 GATTCAGTATGCGAACATTATAT
1 GATTCAGTATGCGAACATTATAT
* *
81546696 GATTCAGTATGTGAACCTTATAT
1 GATTCAGTATGCGAACATTATAT
81546719 ATGAGAACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (23 bp):
GATTCAGTATGCGAACATTATAT
Found at i:81546750 original size:15 final size:15
Alignment explanation
Indices: 81546732--81546841 Score: 103
Period size: 15 Copynumber: 7.3 Consensus size: 15
81546722 AGAACCAAAT
* *
81546732 ATGTGCGAACCTTGC
1 ATGTGCGAACCCTAC
*
81546747 ATGTGCGAACCCTAT
1 ATGTGCGAACCCTAC
* * **
81546762 ATATGCAAACCCTGT
1 ATGTGCGAACCCTAC
*
81546777 ATGTGCGAACCTTAC
1 ATGTGCGAACCCTAC
* *
81546792 ATGTGTGAACACTAC
1 ATGTGCGAACCCTAC
* * *
81546807 ATGTGTGAACACTAA
1 ATGTGCGAACCCTAC
81546822 ATGTGCGAACCCTAC
1 ATGTGCGAACCCTAC
81546837 ATGTG
1 ATGTG
81546842 AACCTGTTAT
Statistics
Matches: 77, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 77 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (15 bp):
ATGTGCGAACCCTAC
Found at i:81546757 original size:30 final size:30
Alignment explanation
Indices: 81546723--81546787 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
81546713 TTATATATGA
* * *
81546723 GAACCAAATATGTGCGAACCTTGCATGTGC
1 GAACCAAATATATGCAAACCCTGCATGTGC
** *
81546753 GAACCCTATATATGCAAACCCTGTATGTGC
1 GAACCAAATATATGCAAACCCTGCATGTGC
81546783 GAACC
1 GAACC
81546788 TTACATGTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (30 bp):
GAACCAAATATATGCAAACCCTGCATGTGC
Found at i:81546757 original size:45 final size:45
Alignment explanation
Indices: 81546708--81546841 Score: 119
Period size: 45 Copynumber: 3.0 Consensus size: 45
81546698 TTCAGTATGT
* *
81546708 GAACCTTATATATG-AGAACCAAATATGTGCGAACCTTGCATGTGC
1 GAACCCTATATATGCA-AACCAAATATGTGCGAACCTTACATGTGC
*** *
81546753 GAACCCTATATATGCAAACCCTGTATGTGCGAACCTTACATGTGT
1 GAACCCTATATATGCAAACCAAATATGTGCGAACCTTACATGTGC
* * * ** * *
81546798 GAACACTACATGTGTGAACACTAA-ATGTGCGAACCCTACATGTG
1 GAACCCTATATATGCAAAC-CAAATATGTGCGAACCTTACATGTG
81546842 AACCTGTTAT
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
45 70 0.97
46 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (45 bp):
GAACCCTATATATGCAAACCAAATATGTGCGAACCTTACATGTGC
Found at i:81550908 original size:17 final size:17
Alignment explanation
Indices: 81550886--81550923 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
81550876 GCTTATTCTC
*
81550886 TTTTTTTT-GTTTTAGT
1 TTTTTTTTAGTTTTAAT
81550902 TTTTTTTTAGTTTTAAT
1 TTTTTTTTAGTTTTAAT
81550919 TTTTT
1 TTTTT
81550924 AAAAATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.11, C:0.00, G:0.08, T:0.82
Consensus pattern (17 bp):
TTTTTTTTAGTTTTAAT
Found at i:81551690 original size:21 final size:21
Alignment explanation
Indices: 81551666--81551736 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 21
81551656 GTTTTTAGGG
81551666 TTAGGGTTTTGTTAAAATAAT
1 TTAGGGTTTTGTTAAAATAAT
* ** *** ***
81551687 TTAGGCTTAGGTTTGTAGGGT
1 TTAGGGTTTTGTTAAAATAAT
*
81551708 TTAGAGTTTTGTTAAAATAAT
1 TTAGGGTTTTGTTAAAATAAT
81551729 TTAGGGTT
1 TTAGGGTT
81551737 CTAGGTTTTA
Statistics
Matches: 30, Mismatches: 20, Indels: 0
0.60 0.40 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.46
Consensus pattern (21 bp):
TTAGGGTTTTGTTAAAATAAT
Found at i:81551718 original size:42 final size:41
Alignment explanation
Indices: 81551655--81551733 Score: 131
Period size: 42 Copynumber: 1.9 Consensus size: 41
81551645 TTTTGTTTAG
* *
81551655 GGTTTTTAGGGTTAGGGTTTTGTTAAAATAATTTAGGCTTA
1 GGTTTGTAGGGTTAGAGTTTTGTTAAAATAATTTAGGCTTA
81551696 GGTTTGTAGGGTTTAGAGTTTTGTTAAAATAATTTAGG
1 GGTTTGTAGGG-TTAGAGTTTTGTTAAAATAATTTAGG
81551734 GTTCTAGGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 10 0.29
42 25 0.71
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (41 bp):
GGTTTGTAGGGTTAGAGTTTTGTTAAAATAATTTAGGCTTA
Found at i:81551863 original size:34 final size:34
Alignment explanation
Indices: 81551785--81551891 Score: 117
Period size: 34 Copynumber: 3.1 Consensus size: 34
81551775 ATGTTTTTTT
****
81551785 AAAATTAATTAAATTAGGGTTT-AGGGGTTTAAA
1 AAAATTAATTAAATTAGGGTTTAATATTTTTAAA
* *
81551818 ATAAATAAATTAAATTAGGGTTTAATATTTTTAAG
1 A-AAATTAATTAAATTAGGGTTTAATATTTTTAAA
* * *
81551853 AAAATTAATTAAATTAAGGTTTAGTTTTTTTAAA
1 AAAATTAATTAAATTAGGGTTTAATATTTTTAAA
81551887 AAAAT
1 AAAAT
81551892 AATAGTATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
33 1 0.02
34 53 0.87
35 7 0.11
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (34 bp):
AAAATTAATTAAATTAGGGTTTAATATTTTTAAA
Found at i:81552323 original size:124 final size:125
Alignment explanation
Indices: 81551948--81552344 Score: 568
Period size: 126 Copynumber: 3.2 Consensus size: 125
81551938 TGATTTTGTT
* * *
81551948 TTTTTTTCCACAGTAGTTCTTGAAAAAATAATTTTGAGAATACGGTTCTGAACAAATAGTGTTAA
1 TTTTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGAC-GTTCTGAACAAATAGTGTTAA
* * *
81552013 AAACACTTCAAGTAGGATACATTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACG-
65 AAACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGC
* *
81552073 TTCTTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTTA
1 TT-TTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGACG-TTCTGAACAAATAGTGTTA
* *
81552138 AAAACACTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGC
64 AAAACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGC
* * *
81552200 TTTTTTTCTACAGTAGTTCATGAAAAATTAATTTTGAGAAGACAGTTCTAAACAAAT-GTG-TCA
1 TTTTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGAC-GTTCTGAACAAATAGTGTTAA
* * *
81552263 AAACACTTTAAGCAGGATGCACTGTCAGCAAAATTGA-TGACAAAAGCTCCTACGTTGACGC
65 AAACACTTCAAGCAGGATGCACTGTCAGCAAAATT-ACTGAAAAAAGCTCCTACGTGGACGC
*
81552324 TATTTTTCTACAGTAGTTCAT
1 TTTTTTTCTACAGTAGTTCAT
81552345 ATTTGTCCTT
Statistics
Matches: 247, Mismatches: 20, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
124 76 0.31
125 7 0.03
126 161 0.65
127 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (125 bp):
TTTTTTTCTACAGTAGTTCATGAAAAAATAATTTTGAGAAGACGTTCTGAACAAATAGTGTTAAA
AACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGC
Found at i:81555454 original size:24 final size:22
Alignment explanation
Indices: 81555399--81555454 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 22
81555389 GAAAACTTTT
*
81555399 ATTTTATTAAAATATAAAAATA
1 ATTTTATTAAAATATAAAAACA
81555421 ATTTACTATTAAAATATTAAAAACA
1 ATTT--TATTAAAATA-TAAAAACA
81555446 ACTTTTATT
1 A-TTTTATT
81555455 TTATTAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
24 14 0.48
25 8 0.28
26 3 0.10
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTATTAAAATATAAAAACA
Found at i:81555902 original size:18 final size:18
Alignment explanation
Indices: 81555881--81555915 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81555871 AAAAGGAAAC
*
81555881 ATATAAGGGTTAGGATAT
1 ATATAAGAGTTAGGATAT
81555899 ATATAAGAGTTAGGATA
1 ATATAAGAGTTAGGATA
81555916 CACACTTGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (18 bp):
ATATAAGAGTTAGGATAT
Found at i:81557707 original size:30 final size:30
Alignment explanation
Indices: 81557673--81557737 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
81557663 ATTAATTAAA
81557673 GAGAGCTTTGAGAAATTTAAGGAGAAATTT
1 GAGAGCTTTGAGAAATTTAAGGAGAAATTT
* *
81557703 GAGAGCTTTGAGAAATTTAGGGAGAAGTTT
1 GAGAGCTTTGAGAAATTTAAGGAGAAATTT
81557733 GAGAG
1 GAGAG
81557738 TTTTTTGCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.32, T:0.28
Consensus pattern (30 bp):
GAGAGCTTTGAGAAATTTAAGGAGAAATTT
Found at i:81559634 original size:13 final size:13
Alignment explanation
Indices: 81559556--81559632 Score: 118
Period size: 13 Copynumber: 5.9 Consensus size: 13
81559546 TAAACCAAAT
81559556 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
81559569 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
81559582 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
81559595 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
81559608 TTTTCAAAAGCAT
1 TTTTCAAAAGCAC
81559621 TTTTCAAAAGCA
1 TTTTCAAAAGCA
81559633 TTGCCAAACT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 57 1.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:81560082 original size:16 final size:16
Alignment explanation
Indices: 81560061--81560094 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
81560051 ACAACTATTT
81560061 TAATATTATTTAAATA
1 TAATATTATTTAAATA
*
81560077 TAATATTATTTTAATA
1 TAATATTATTTAAATA
81560093 TA
1 TA
81560095 TTTTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATATTATTTAAATA
Found at i:81566307 original size:150 final size:150
Alignment explanation
Indices: 81566037--81566491 Score: 743
Period size: 150 Copynumber: 3.0 Consensus size: 150
81566027 TATGCCCAAC
*
81566037 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAG-AGGGGGAAAGGATATATATCAAAAAGA
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAAGGGGAAAAGGATATATATCAAAAAGA
* *
81566101 GATCATAATAAGGTGGCTTGTCAGCCATGCGAATCGACTCAACATAAAAGGACATATTAGTACTT
66 GATCATAATAAGGTGGCTTGTCAGCCATGCGAATCGACTCAACGTAAAAGGACATATTAGTATTT
*
81566166 AGGGTACTTATTTTATCTAT
131 AGGGTGCTTATTTTATCTAT
* *
81566186 GGTAAATCTCGTAAAGGTCTTTTTGTCTTCCATGAAGAAGGGGAAAAGGATACATATCAAAAAGA
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAAGGGGAAAAGGATATATATCAAAAAGA
* *
81566251 GATCATAATAAGGTGGCTTGTCAGTCATGCGAATCAACTCAACGTAAAAGGACATATTAGTATTT
66 GATCATAATAAGGTGGCTTGTCAGCCATGCGAATCGACTCAACGTAAAAGGACATATTAGTATTT
81566316 AGGGTGCTTATTTTATCTAT
131 AGGGTGCTTATTTTATCTAT
* * *
81566336 GGTAAATCTCGTAAAGGTCTTTTTATCTGCCATGAAGAGGGGGAAAAGGATATATATCAAAAATA
1 GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAAGGGGAAAAGGATATATATCAAAAAGA
* * * *
81566401 GATCATAATAAGGTGCCTTGAT-AGCCATGTGAATGGACTCAATGTAAAAGGACATATTAGTATT
66 GATCATAATAAGGTGGCTTG-TCAGCCATGCGAATCGACTCAACGTAAAAGGACATATTAGTATT
*
81566465 TTGGGTGCTTATTTTATCTAT
130 TAGGGTGCTTATTTTATCTAT
81566486 GGTAAA
1 GGTAAA
81566492 GAGAGATAAT
Statistics
Matches: 284, Mismatches: 20, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
149 36 0.13
150 247 0.87
151 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (150 bp):
GGTAAATCTCGTAAAGGTCTTTTTGTCTGCCATGAAGAAGGGGAAAAGGATATATATCAAAAAGA
GATCATAATAAGGTGGCTTGTCAGCCATGCGAATCGACTCAACGTAAAAGGACATATTAGTATTT
AGGGTGCTTATTTTATCTAT
Found at i:81579180 original size:30 final size:30
Alignment explanation
Indices: 81579144--81579210 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
81579134 AGACACGTGG
* *
81579144 CCATGTGGTGTGGCCATGTGTGTCACATGA
1 CCATGTGGTGTGGCCATGTGTGGCACACGA
* *
81579174 CCATGTGGTGTGGCCGTGTGTGGCACGCGA
1 CCATGTGGTGTGGCCATGTGTGGCACACGA
81579204 CCATGTG
1 CCATGTG
81579211 ACAGCCCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.13, C:0.22, G:0.37, T:0.27
Consensus pattern (30 bp):
CCATGTGGTGTGGCCATGTGTGGCACACGA
Found at i:81582415 original size:27 final size:27
Alignment explanation
Indices: 81582357--81582833 Score: 241
Period size: 27 Copynumber: 17.7 Consensus size: 27
81582347 TTAGTTTACC
* * * *
81582357 AAATTACTAAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
81582384 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
81582411 GAATTACCTTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
81582438 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** * *
81582465 GAATTGA-TGTTTTACCCTTGATTTACA
1 AAATT-ACCAAAATACCCTCGATTTATA
* * *** * *
81582492 GAATTACTATTTTACACTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * * *
81582519 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
81582546 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACCAAAATACCCTCGATTTA-TA
* *
81582573 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * * *
81582599 AAATTGCTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
81582626 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
81582653 AAATTACCAAAATATCCCTAG-TTTGTA
1 AAATTACCAAAATA-CCCTCGATTTATA
* *
81582680 AAATTACCAAAATACCACT-GGTTT-TG
1 AAATTACCAAAATACC-CTCGATTTATA
* * *
81582706 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
81582733 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACCAAAATACCCTC-GATTTATA
* * * *
81582760 AAGTTACAAAAATACCCTTGACTTTCTAA
1 AAATTACCAAAATACCCTCGA-TTTAT-A
*** * * * *
81582789 AAATTATGGAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
81582816 AAATTACTAAAATACCCT
1 AAATTACCAAAATACCCT
81582834 TAGTTTGTAG
Statistics
Matches: 365, Mismatches: 69, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
25 2 0.01
26 44 0.12
27 291 0.80
28 12 0.03
29 16 0.04
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:81582621 original size:80 final size:79
Alignment explanation
Indices: 81582518--81582749 Score: 338
Period size: 80 Copynumber: 2.9 Consensus size: 79
81582508 CTCGATTTAC
* * * **
81582518 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTT-TAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
81582583 AATACCCTAGTTTGT
65 AATACCCTAGTTTGT
* *
81582598 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTT-TAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
81582663 AATATCCCTAGTTTGT
65 AATA-CCCTAGTTTGT
* * * *
81582679 AAAATTACCAAAATACCACTGGTTTTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
1 AAAATTACTAAAATACCCCTGGTTTTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
81582744 ATACCC
66 ATACCC
81582750 CTGATTTACA
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 3 0.02
80 101 0.74
81 33 0.24
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (79 bp):
AAAATTACTAAAATACCCCTGGTTTTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCTAGTTTGT
Found at i:81582656 original size:107 final size:107
Alignment explanation
Indices: 81582518--81582777 Score: 278
Period size: 107 Copynumber: 2.4 Consensus size: 107
81582508 CTCGATTTAC
*** *
81582518 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATATCCCTAG-TCAGTAAAATTACCA
* * **
81582582 AAATACC-CTAGTTTGTAAAATTGCTAAAATACCC-CTGGTTTGT
65 AAATACCACTAGTTT-TAAAATTACCAAAATACCCTC-AATTTGT
** **
81582625 AAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATATCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATATCCCTAGTCAGTAAAATTACCAA
* * *
81582690 AATACCACTGGTTTTGAAATTACCGAAATACCCTCAATTTGT
66 AATACCACTAGTTTTAAAATTACCAAAATACCCTCAATTTGT
* * * *
81582732 AAAATTACCAAAATACCC-CTGATTTACAAAGTTACAAAAATA-CCCT
1 AAAATTACTAAAATACCCTC-AATTTACAAAATTACCAAAATATCCCT
81582778 TGACTTTCTA
Statistics
Matches: 128, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
106 5 0.04
107 111 0.87
108 12 0.09
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (107 bp):
AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATATCCCTAGTCAGTAAAATTACCAA
AATACCACTAGTTTTAAAATTACCAAAATACCCTCAATTTGT
Found at i:81582772 original size:80 final size:79
Alignment explanation
Indices: 81582518--81582777 Score: 319
Period size: 80 Copynumber: 3.2 Consensus size: 79
81582508 CTCGATTTAC
* * **
81582518 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCC-TGGTTTATAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
*
81582583 AATACCCTAGTTTGT
65 AATACCCTAGATTGT
* * *
81582598 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATA-CCCTGGTTTATAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
*
81582663 AATATCCCTAGTTTGT
65 AATA-CCCTAGATTGT
* * *
81582679 AAAATTACCAAAATACCACTGGTTT-TGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACC-CTGGTTTATAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
81582743 AATACCCCT-GATT-T
65 AATA-CCCTAGATTGT
*
81582757 ACAAAGTTACAAAAATACCCT
1 A-AAA-TTACTAAAATACCCT
81582778 TGACTTTCTA
Statistics
Matches: 160, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
78 2 0.01
79 8 0.05
80 116 0.73
81 34 0.21
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (79 bp):
AAAATTACTAAAATACCCTGGTTTATAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCTAGATTGT
Found at i:81582957 original size:27 final size:27
Alignment explanation
Indices: 81582880--81582957 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
81582870 AAATGACTAA
* *
81582880 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* * *
81582907 AA-AGACCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
81582934 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
81582958 GAATATGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:81583305 original size:20 final size:20
Alignment explanation
Indices: 81583270--81583310 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
81583260 TGCACGATGG
81583270 TAAGTTGGGCCTCAATGGGC
1 TAAGTTGGGCCTCAATGGGC
81583290 TAAGATTGGGCC-CAATGGGC
1 TAAG-TTGGGCCTCAATGGGC
81583310 T
1 T
81583311 TTCAGACCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (20 bp):
TAAGTTGGGCCTCAATGGGC
Found at i:81583772 original size:26 final size:26
Alignment explanation
Indices: 81583743--81583890 Score: 194
Period size: 26 Copynumber: 5.8 Consensus size: 26
81583733 GAGGAAGTGC
**
81583743 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
81583769 AAAAGGGCTTATTCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
81583795 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
81583821 AAAAGGG-TTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
81583846 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
81583871 AAAAGTGCTT-TACCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
81583891 ATTAAAGAGG
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
25 54 0.50
26 55 0.50
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:81583821 original size:52 final size:51
Alignment explanation
Indices: 81583743--81583890 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 51
81583733 GAGGAAGTGC
81583743 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATTCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TTCCCCAGTTTACCG
*
81583795 AAAAGGGCTTATACCCCAGTTTATTGAAAAGGG-TTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTT-CCCCAGTTTACCG
** * *
81583846 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGTGCTTTACCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTTCCCCAGTT
81583891 ATTAAAGAGG
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
50 28 0.32
51 28 0.32
52 32 0.36
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTTCCCCAGTTTACCG
Found at i:81583842 original size:25 final size:26
Alignment explanation
Indices: 81583743--81583890 Score: 178
Period size: 25 Copynumber: 5.8 Consensus size: 26
81583733 GAGGAAGTGC
* **
81583743 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
81583769 AAAAGGGCTTATT-CCCCAGTTTACCG
1 AAAAGGGCTT-TTGCCCCAGTTTACCG
* * **
81583795 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
81583821 AAAAGGG-TTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
81583846 AAAAGGGC-TTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* *
81583871 AAAAGTGC-TTTACCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
81583891 ATTAAAGAGG
Statistics
Matches: 107, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
25 57 0.53
26 49 0.46
27 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:81584094 original size:42 final size:42
Alignment explanation
Indices: 81584035--81584126 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
81584025 TAGTCTCCCC
* ** *
81584035 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
81584077 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
81584119 AAATGGGC
1 AAATGGGC
81584127 CTAAGAGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:81584188 original size:31 final size:31
Alignment explanation
Indices: 81584150--81584226 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
81584140 CGTTTACAGT
81584150 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* *
81584181 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
81584212 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
81584227 GTAACTGTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:81588046 original size:21 final size:21
Alignment explanation
Indices: 81588022--81588061 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
81588012 ATATTTAACC
81588022 ATTTCCAAGCCATTCAAAACT
1 ATTTCCAAGCCATTCAAAACT
81588043 ATTTCCAAGCCATTCAAAA
1 ATTTCCAAGCCATTCAAAA
81588062 TATACCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.28, G:0.05, T:0.28
Consensus pattern (21 bp):
ATTTCCAAGCCATTCAAAACT
Found at i:81593870 original size:43 final size:43
Alignment explanation
Indices: 81593665--81593859 Score: 320
Period size: 43 Copynumber: 4.5 Consensus size: 43
81593655 GCTGGTATTA
* *
81593665 TATTTGGGCCCTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
81593708 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
81593751 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
81593794 TATTCGGGCCTTCGTGCCTAGCAGGCTTCA-TGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTT-AGTGCCGGTGATGTG
81593837 TATTCGGGCCTTCGTGCCTAGCA
1 TATTCGGGCCTTCGTGCCTAGCA
81593860 AGCGTAATGC
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
43 141 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:81597109 original size:14 final size:14
Alignment explanation
Indices: 81597072--81597115 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
81597062 GACCTTATTT
*
81597072 TCCCTCATCAATCA
1 TCCCTCATCCATCA
* * *
81597086 TCCTTTATCCCTCA
1 TCCCTCATCCATCA
81597100 TCCCTCATCCATCA
1 TCCCTCATCCATCA
81597114 TC
1 TC
81597116 ATTCTCTCTA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.20, C:0.45, G:0.00, T:0.34
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:81597954 original size:20 final size:21
Alignment explanation
Indices: 81597916--81597955 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
81597906 AGTTTATTTA
81597916 TGTTATAATTGTTGCAAATTG
1 TGTTATAATTGTTGCAAATTG
81597937 TGTT-TAATT-TTGCTAAATT
1 TGTTATAATTGTTGC-AAATT
81597956 CTACTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.53
Consensus pattern (21 bp):
TGTTATAATTGTTGCAAATTG
Found at i:81605485 original size:12 final size:12
Alignment explanation
Indices: 81605468--81605492 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81605458 CATTATACTA
81605468 TGGTTACCAACT
1 TGGTTACCAACT
81605480 TGGTTACCAACT
1 TGGTTACCAACT
81605492 T
1 T
81605493 ATCCATCAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (12 bp):
TGGTTACCAACT
Found at i:81607817 original size:37 final size:37
Alignment explanation
Indices: 81607767--81607845 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
81607757 TTATTACGAA
* * *
81607767 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
81607804 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
81607841 GTCTT
1 GTCTT
81607846 TAAAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:81608185 original size:49 final size:47
Alignment explanation
Indices: 81607964--81608331 Score: 578
Period size: 47 Copynumber: 7.7 Consensus size: 47
81607954 CCCTTCGGGA
* * * *
81607964 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
81608011 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81608058 CTTATCACATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81608105 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81608152 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81608201 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81608250 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81608297 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
81608332 AGAATCCTAA
Statistics
Matches: 304, Mismatches: 13, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 3 0.01
47 205 0.67
49 96 0.32
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81608371 original size:192 final size:190
Alignment explanation
Indices: 81607975--81608331 Score: 542
Period size: 192 Copynumber: 1.9 Consensus size: 190
81607965 TTATCACATT
* * * * *
81607975 TATACACTTTCACATCCATCACGTTGGCCACTT-GGCCCTGTCAC--ATATATACACTTTCACAT
1 TATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATATACACTTTCACAT
*
81608037 TCATCACATCGGCCATTAGGCCTTATCACATATATAGACTTTCACATTCATCACATCGGCCATTA
65 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* * * *
81608102 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
130 GGCCTTATCACATATATACACTTTCACATCCATCACATCAG-CA-TAGGCCTAATCAAATATA
81608165 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
81608230 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
66 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
81608295 GCCTTATCTCATATATGCA-TGTTCACATCCATCACAT
131 GCCTTATCACATATATACACT-TTCACATCCATCACAT
81608332 AGAATCCTAA
Statistics
Matches: 154, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
189 2 0.01
190 36 0.23
191 1 0.01
192 115 0.75
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (190 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATATACACTTTCACATCCATCACATCAGCATAGGCCTAATCAAATATA
Found at i:81613163 original size:40 final size:40
Alignment explanation
Indices: 81613065--81613326 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
81613055 TCCTCGTTCA
* * * * *
81613065 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
81613104 AATGCCTTCGGGACATAACCTGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81613144 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81613184 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
81613224 AATGCCTTCGGGACTTATCCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
81613264 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
*
81613304 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81613327 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
39 52 0.26
40 140 0.71
41 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:81620906 original size:40 final size:40
Alignment explanation
Indices: 81620818--81620983 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
81620808 CTCCTCGTTA
* * *
81620818 AATGCCTTCGGGACATAGCCCGG-TTTAGTAA-TCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
81620855 AA-GCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
81620894 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
81620933 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
81620973 AAGGCCTTCGG
1 AATGCCTTCGG
81620984 ATCTTATCCG
Statistics
Matches: 115, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
36 19 0.17
37 8 0.07
38 5 0.04
39 40 0.35
40 43 0.37
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:81620955 original size:79 final size:76
Alignment explanation
Indices: 81620817--81620983 Score: 201
Period size: 79 Copynumber: 2.2 Consensus size: 76
81620807 GCTCCTCGTT
* *
81620817 AAATGCCTTCGGGACATAGCCCGGTTTAGTAATCACACAAGCCTTCGGGACATAACCCGGATTTA
1 AAATGCCTTCGGGACATAACCCGGTTTAGAAATCACACAAGCCTTCGGGACATAACCCGGATTTA
81620882 ACAACTCGCAC
66 ACAACTCGCAC
* * * *
81620893 GAATGCCTTCGGGACTTAACCCGGATTTA-AAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 AAATGCCTTCGGGACATAACCCGG-TTTAGAAA-TCACAC-AA-GCCTTCGGGACATAACCCGGA
** *
81620957 TTTAGTATCTCGCAC
62 TTTAACAACTCGCAC
*
81620972 AAAGGCCTTCGG
1 AAATGCCTTCGG
81620984 ATCTTATCCG
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
76 23 0.30
77 9 0.12
78 2 0.03
79 42 0.55
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (76 bp):
AAATGCCTTCGGGACATAACCCGGTTTAGAAATCACACAAGCCTTCGGGACATAACCCGGATTTA
ACAACTCGCAC
Found at i:81621034 original size:39 final size:39
Alignment explanation
Indices: 81620818--81621034 Score: 187
Period size: 39 Copynumber: 5.6 Consensus size: 39
81620808 CTCCTCGTTA
* * ** * *
81620818 AATGCCTTCGGGACATAGCCCGG-TTTAGTAATCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACACTCGCACG
*
81620855 AA-GCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAAC-ACTCGCACG
*
81620894 AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACACTCGCACG
** *
81620933 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACA-CTCGCACG
* * * * *
81620973 AAGGCCTTC-GGATCTT-ATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAC-TCGCACG
*
81621012 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81621035 CAGCATTCAA
Statistics
Matches: 152, Mismatches: 18, Indels: 18
0.81 0.10 0.10
Matches are distributed among these distances:
36 19 0.12
37 6 0.04
38 15 0.10
39 63 0.41
40 49 0.32
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACACTCGCACG
Found at i:81628103 original size:38 final size:38
Alignment explanation
Indices: 81628057--81628163 Score: 144
Period size: 38 Copynumber: 2.7 Consensus size: 38
81628047 TCCTCGTTTA
*
81628057 AATGCCTTCGGGACATAGCCCGGATTTAGAACTCACAC-
1 AATGCCTTCGGGAC-TAACCCGGATTTAGAACTCACACG
* *
81628095 AATGCCTTCGGGACTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTAACCCGGATTT-AGAACTCACACG
81628134 AATGCCTTCGGGACTTAACCCGGGATTTAG
1 AATGCCTTCGGGAC-TAACCC-GGATTTAG
81628164 TATCTCGCAC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
37 11 0.18
38 23 0.38
39 14 0.23
40 7 0.11
41 6 0.10
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (38 bp):
AATGCCTTCGGGACTAACCCGGATTTAGAACTCACACG
Found at i:81628172 original size:41 final size:37
Alignment explanation
Indices: 81628057--81628185 Score: 150
Period size: 41 Copynumber: 3.3 Consensus size: 37
81628047 TCCTCGTTTA
* *
81628057 AATGCCTTCGGGACATAGCCCGGATTTAGAACTCACAC
1 AATGCCTTCGGGAC-TAACCCGGATTTAGAACTCGCAC
*
81628095 AATGCCTTCGGGACTAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTAACCCGGATTT-AGAACTCGCAC
*
81628133 GAATGCCTTCGGGACTTAACCCGGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGAC-TAACCC-GGATTTAG-AACTCGCAC
*
81628174 AAAGGCCTTCGG
1 -AATGCCTTCGG
81628186 ATCTTAATCC
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
37 11 0.14
38 23 0.29
39 14 0.18
40 7 0.09
41 24 0.30
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (37 bp):
AATGCCTTCGGGACTAACCCGGATTTAGAACTCGCAC
Found at i:81628192 original size:41 final size:41
Alignment explanation
Indices: 81628060--81628237 Score: 131
Period size: 41 Copynumber: 4.5 Consensus size: 41
81628050 TCGTTTAAAT
* * * * *
81628060 GCCTTCGGGACATAGCCC-GGATTT-AGAACTCACAC-AAT
1 GCCTTCGGGACTTAACCCGGGATTTAACAACTCGCACAAAG
* *
81628098 GCCTTCGGGAC-TAACCC-GGATTTAACAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGGATTTAACAACTCGCACAAAG
** *
81628137 GCCTTCGGGACTTAACCCGGGATTTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGGATTTAACAACTCGCACAAAG
* * * *
81628178 GCCTTC-GGATCTTAATCC-GGATATATTC-ACTTAGCACAAA-
1 GCCTTCGGGA-CTTAACCCGGGATTTA-ACAAC-TCGCACAAAG
*
81628218 GCCTTCGGGACTTAGCCCGG
1 GCCTTCGGGACTTAACCCGG
81628238 ACAGCATTCA
Statistics
Matches: 115, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
37 11 0.10
38 20 0.17
39 14 0.12
40 28 0.24
41 42 0.37
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (41 bp):
GCCTTCGGGACTTAACCCGGGATTTAACAACTCGCACAAAG
Found at i:81631330 original size:27 final size:27
Alignment explanation
Indices: 81631308--81631600 Score: 392
Period size: 27 Copynumber: 10.8 Consensus size: 27
81631298 CAATTTGTAA
*
81631308 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAG
*
81631335 AATTACCATTTTTTACCCTCTATTTATAG
1 AATTACCA--TTTTACCCTCGATTTATAG
81631364 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
81631391 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
*
81631418 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAG
*
81631445 AATTACCATTTTACCCTCGGTTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
* * *
81631472 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAG
*
81631499 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
* * * * *
81631526 AATTTCTATTTTACCCTTGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAG
* *
81631553 AATTACCA-TTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTATAG
* *
81631579 AATTACCGTTTTACCCTAGATT
1 AATTACCATTTTACCCTCGATT
81631601 GTGAAATTAC
Statistics
Matches: 238, Mismatches: 23, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
25 1 0.00
26 22 0.09
27 189 0.79
28 1 0.00
29 25 0.11
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTATAG
Found at i:81631668 original size:27 final size:27
Alignment explanation
Indices: 81631592--81631729 Score: 163
Period size: 27 Copynumber: 5.1 Consensus size: 27
81631582 TACCGTTTTA
* * **
81631592 CCCTAGATTGTGAAATTACTGAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
81631619 CCCTAGTTTGT-AAATTACCAAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
*
81631645 CCCTATTTTGTAAAATTACCAAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
* * * *
81631672 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCTAGTTTGTAAAATTACCAAAATAC
*
81631698 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-AGTTTGTAAAATTACCAAAATAC
81631726 CCCT
1 CCCT
81631730 GATTTACAAA
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
26 26 0.28
27 64 0.68
28 4 0.04
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
CCCTAGTTTGTAAAATTACCAAAATAC
Found at i:81631753 original size:54 final size:54
Alignment explanation
Indices: 81631630--81631755 Score: 141
Period size: 54 Copynumber: 2.3 Consensus size: 54
81631620 CCTAGTTTGT
* * **
81631630 AAATTACCA-AAATACCC-CTATTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTA-CAGAAATACCCTC-AATTTGTAAAATTACCAAAATACCACTGATTTGAC
* *
81631684 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTT-AC
1 AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTGAC
*
81631737 AAAGTTACAGATATACCCT
1 AAA-TTACAGAAATACCCT
81631756 TGACTTTCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTGAC
Found at i:81631817 original size:27 final size:27
Alignment explanation
Indices: 81631710--81631817 Score: 67
Period size: 27 Copynumber: 3.9 Consensus size: 27
81631700 CTCAATTTGT
** * *
81631710 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* * * *
81631737 AAAGTTACAGATATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
* * *
81631764 TAAAAATTA-TAGAAACACCATTAGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
81631793 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
81631818 GTAGATTTAC
Statistics
Matches: 59, Mismatches: 16, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
27 37 0.63
28 7 0.12
29 15 0.25
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:81644335 original size:40 final size:40
Alignment explanation
Indices: 81644251--81644434 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
81644241 TTGAATGCTG
* * * *
81644251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
81644290 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
81644331 TCCGGGTTAAGTCCCGAAGGCCTTTGTGTGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
81644371 TCCGGGTTAAGTTCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
81644411 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81644435 GTATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 109 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:81644387 original size:80 final size:81
Alignment explanation
Indices: 81644251--81644431 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 81
81644241 TTGAATGCTG
*
81644251 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
81644315 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
* ** *
81644331 TCCGGGTTAAGTCCCGAAGGCCTTTGTG-TGAGAT-ACTA-ATTCCGGGTTAAGTTCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCTAAG-TGACTATA-TCCGGACTAAGATCCGAAGGCA
81644393 TTCGTGCGAGTTTTAAAA
64 TTCGTGCGAGTTTTAAAA
81644411 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
81644432 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
79 3 0.03
80 79 0.88
81 8 0.09
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:81653203 original size:42 final size:42
Alignment explanation
Indices: 81653157--81653305 Score: 183
Period size: 42 Copynumber: 3.5 Consensus size: 42
81653147 TTTACGTGTC
* * * * *
81653157 AGACCATATCTGGGATATGACATCGTTATGATATTTTATGTA
1 AGACCATATCTGGGATATGGCATCGATATGAGATATCATGTA
*
81653199 AGACCATGTCTGGGATATGGCATCGATATGAGA-ATCATGTA
1 AGACCATATCTGGGATATGGCATCGATATGAGATATCATGTA
* * * **
81653240 AGACCATAGCTGGGCTATTGGCATCAATATGAGATCCCATGTA
1 AGACCATATCTGGGATA-TGGCATCGATATGAGATATCATGTA
81653283 AGACCATATCTGGGATATGGCAT
1 AGACCATATCTGGGATATGGCAT
81653306 TGGTATGATT
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 20 0.22
42 50 0.55
43 21 0.23
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
AGACCATATCTGGGATATGGCATCGATATGAGATATCATGTA
Found at i:81666330 original size:13 final size:13
Alignment explanation
Indices: 81666312--81666341 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
81666302 GGCAAAGAAA
81666312 AAAATATTTTTTG
1 AAAATATTTTTTG
*
81666325 AAAATATTTTTTT
1 AAAATATTTTTTG
81666338 AAAA
1 AAAA
81666342 AAATTAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
AAAATATTTTTTG
Found at i:81666511 original size:67 final size:67
Alignment explanation
Indices: 81666431--81666561 Score: 165
Period size: 67 Copynumber: 2.0 Consensus size: 67
81666421 AATGAATATT
* * * * * *
81666431 AAAACTAATAAAATCT-GTTCTAGGATTTTTTCTCGCTGTTTAACAGATTTTATTTGATTTTTTT
1 AAAACTAATAAAATCTATTTC-AGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTT
81666495 TCC
65 TCC
* * *
81666498 AAAATTAATAAAATCTATTTCGGGATTTATTCTCGCCGTTCAATAGATTTTATTTCATTATTTT
1 AAAACTAATAAAATCTATTTCAGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTT
81666562 GATTTTATTT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
67 51 0.94
68 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (67 bp):
AAAACTAATAAAATCTATTTCAGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTTT
CC
Found at i:81666608 original size:89 final size:88
Alignment explanation
Indices: 81666504--81667233 Score: 322
Period size: 84 Copynumber: 8.5 Consensus size: 88
81666494 TTCCAAAATT
* *
81666504 AATAAAATCTATTTCGGGATTTATTCTCGCCGTTCAATAGATTTTATTTCATTATTTTGATTTTA
1 AATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTTG-TTTTA
**
81666569 TTTTTAAACT-GGAAATTAAAGGTA
65 TTTCCAAA-TGGGAAATTAAAGGTA
* *
81666593 AATAAAATCTGTTTCGGGATTTATTCTCACCGTTCAACGGATTTTA-TTCTATTATTTTGTTTCT
1 AATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTTC-ATTATTTTGTTT-T
81666657 ATTTCCAAATGGGAAATTAAAGGTA
64 ATTTCCAAATGGGAAATTAAAGGTA
* ** ** * * * *
81666682 AATAAAATCCGTTTTAGGATTGGTTCCCGCCGTTTAACA-ATTTTATTCCA-AATTTTGTTTTAT
1 AATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTTGTTTTAT
*
81666745 TTCC-AA----AAA--CAA-GTAA
66 TTCCAAATGGGAAATTAAAGGT-A
* * * * * * *
81666761 AATAAAATATGTTTTGAGATTGATTC-CTACCGTTCAACGGA-TTTA-TT-A-CATTTTGATTTT
1 AATAAAATCTGTTTCGGGATTTATTCTC-GCCGTTCAACAGATTTTATTTCATTATTTTG-TTTT
* * * *
81666821 GTTGCCAAAAACT-AGAAATTAAA-TTA
64 ATTTCC--AAA-TGGGAAATTAAAGGTA
* * * * * * *
81666847 AATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTA-TT--TGA-TTTGATTTT
1 AATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAAC-AGATTTTATTTCATTATTTTG-TTTT
* ** *
81666908 GTTTCCAAATTAG-AATCT-AA-TTA
64 ATTTCCAAATGGGAAAT-TAAAGGTA
* * * * * * *
81666931 AATAAAATATGTTTCGGGATTTATTCCCGCCATTTAACAAGATTTGA-TT--TGA-TTTGATTTG
1 AATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAAC-AGATTTTATTTCATTATTTTG-TTTT
* ** *
81666992 ATTTCTAAATTAG-AA-TATAA-TTA
64 ATTTCCAAATGGGAAATTA-AAGGTA
* * * *
81667015 AATAAAATCTGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTA-TT--TTATTTTATTTTA
1 AATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAAC-AGATTTTATTTCATTATTTTGTTTTA
* ** * * *
81667077 TTTCTAAATTAGAATTTGAA-TTA
65 TTTCCAAATGGGAAATTAAAGGTA
* * * * *
81667100 AATAAAATTTTTTTCGGGATTTATTC-CTGTCGTTTAACAAGATTTTA-TT--TTATTTTATTTT
1 AATAAAATCTGTTTCGGGATTTATTCTC-GCCGTTCAAC-AGATTTTATTTCATTATTTTGTTTT
** * * *
81667161 ATTTCCAAATTCGAATTTGAA-TTA
64 ATTTCCAAATGGGAAATTAAAGGTA
* * *
81667185 AATAAAATTTGTTTCGAGATTTATTC-CTGCCGTTTAACAAGATTTTATT
1 AATAAAATCTGTTTCGGGATTTATTCTC-GCCGTTCAAC-AGATTTTATT
81667234 CGATATTATT
Statistics
Matches: 544, Mismatches: 67, Indels: 63
0.81 0.10 0.09
Matches are distributed among these distances:
77 7 0.01
78 12 0.02
79 36 0.07
80 1 0.00
81 5 0.01
82 1 0.00
84 146 0.27
85 143 0.26
86 38 0.07
87 29 0.05
88 21 0.04
89 105 0.19
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.45
Consensus pattern (88 bp):
AATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTTCATTATTTTGTTTTAT
TTCCAAATGGGAAATTAAAGGTA
Found at i:81666620 original size:156 final size:154
Alignment explanation
Indices: 81666341--81666640 Score: 335
Period size: 156 Copynumber: 1.9 Consensus size: 154
81666331 TTTTTTTAAA
*
81666341 AAAATTAAATAAATCTATTTCGGGATTTTTCCTGCCGTTCAATAGATTTCTCTTTTTTTCTCTAT
1 AAAATTAAATAAATCTATTTCGGGATTTTTCCTGCCGTTCAATAGA--T-TCTTTATTTCTCTAT
* * * *
81666406 TTTTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGTTCTAGGATTTTTTCTCGCTGTT
63 TTTATTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGTTCTAGGATTTATTCTCACCGTT
*
81666471 TAACAGATTTTATTTGATTTTTTTTCC
128 CAACAGATTTTATTTGATTTTTTTTCC
81666498 AAAATT-AATAAAATCTATTTCGGGATTTATT-CTCGCCGTTCAATAGA-T-TTTATTTCAT-TA
1 AAAATTAAAT-AAATCTATTTCGGGATTT-TTCCT-GCCGTTCAATAGATTCTTTATTTC-TCTA
** ** *
81666558 TTTTGATTTTATTTTTAAACTGGAA-ATTAAAGGTAAATAAAATCTGTT-TCGGGATTTATTCTC
62 TTTT-ATTTTATTTCCAAA-T-GAATATTAAAACT-AATAAAATCTGTTCT-AGGATTTATTCTC
*
81666621 ACCGTTCAACGGATTTTATT
122 ACCGTTCAACAGATTTTATT
81666641 CTATTATTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
153 13 0.11
154 13 0.11
155 9 0.07
156 46 0.38
157 26 0.21
158 15 0.12
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (154 bp):
AAAATTAAATAAATCTATTTCGGGATTTTTCCTGCCGTTCAATAGATTCTTTATTTCTCTATTTT
ATTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGTTCTAGGATTTATTCTCACCGTTCAA
CAGATTTTATTTGATTTTTTTTCC
Found at i:81666951 original size:84 final size:85
Alignment explanation
Indices: 81666812--81667254 Score: 561
Period size: 85 Copynumber: 5.2 Consensus size: 85
81666802 TTTATTACAT
* * * * * *
81666812 TTTGATTTTGTTGCCAAAAACTAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGT
1 TTTGATTTTGTTTCC--AAATTAGAATTTGAATTAAATAAAATATGTTTCGGGATTTATTCCCGT
81666877 CGTTTAACAAGATTTTATTTGA
64 CGTTTAACAAGATTTTATTTGA
* * *
81666899 TTTGATTTTGTTTCCAAATTAGAATCT-AATTAAATAAAATATGTTTCGGGATTTATTCCCGCCA
1 TTTGATTTTGTTTCCAAATTAGAATTTGAATTAAATAAAATATGTTTCGGGATTTATTCCCGTCG
*
81666963 TTTAACAAGATTTGATTTGA
66 TTTAACAAGATTTTATTTGA
* * *
81666983 TTTGA-TTTGATTTCTAAATTAGAATAT-AATTAAATAAAATCTGTTTCGGGATTTATTCCCGTC
1 TTTGATTTTG-TTTCCAAATTAGAATTTGAATTAAATAAAATATGTTTCGGGATTTATTCCCGTC
*
81667046 GTTTAACAAGATTTTATTTTA
65 GTTTAACAAGATTTTATTTGA
* * * * * *
81667067 TTTTATTTTATTTCTAAATTAGAATTTGAATTAAATAAAATTTTTTTCGGGATTTATTCCTGTCG
1 TTTGATTTTGTTTCCAAATTAGAATTTGAATTAAATAAAATATGTTTCGGGATTTATTCCCGTCG
*
81667132 TTTAACAAGATTTTATTTTA
66 TTTAACAAGATTTTATTTGA
* * * * * * *
81667152 TTTTATTTTATTTCCAAATTCGAATTTGAATTAAATAAAATTTGTTTCGAGATTTATTCCTGCCG
1 TTTGATTTTGTTTCCAAATTAGAATTTGAATTAAATAAAATATGTTTCGGGATTTATTCCCGTCG
*
81667217 TTTAACAAGATTTTATTCGA
66 TTTAACAAGATTTTATTTGA
81667237 TATT-ATTTTGTTTCCAAA
1 T-TTGATTTTGTTTCCAAA
81667255 CAAAGACGTA
Statistics
Matches: 322, Mismatches: 30, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
83 4 0.01
84 144 0.45
85 158 0.49
86 2 0.01
87 14 0.04
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.46
Consensus pattern (85 bp):
TTTGATTTTGTTTCCAAATTAGAATTTGAATTAAATAAAATATGTTTCGGGATTTATTCCCGTCG
TTTAACAAGATTTTATTTGA
Found at i:81666981 original size:5 final size:5
Alignment explanation
Indices: 81666971--81666995 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81666961 CATTTAACAA
81666971 GATTT GATTT GATTT GATTT GATTT
1 GATTT GATTT GATTT GATTT GATTT
81666996 CTAAATTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
GATTT
Found at i:81667132 original size:85 final size:84
Alignment explanation
Indices: 81666837--81667254 Score: 559
Period size: 84 Copynumber: 5.0 Consensus size: 84
81666827 AAAAACTAGA
* * *
81666837 AATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGATTT
1 AATTTAATTAAATAAAATATGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGATTT
*
81666902 GATTTTGTTTCCAAATTAG
66 GATTTTATTTCCAAATTAG
* * * *
81666921 AATCTAATTAAATAAAATATGTTTCGGGATTTATTCCCGCCATTTAACAAGATTTGATTTGATTT
1 AATTTAATTAAATAAAATATGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGATTT
* *
81666986 GATTTGATTTCTAAATTAG
66 GATTTTATTTCCAAATTAG
* * *
81667005 AATATAATTAAATAAAATCTGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTTTATTT
1 AATTTAATTAAATAAAATATGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGATTT
* *
81667070 TATTTTATTTCTAAATTAG
66 GATTTTATTTCCAAATTAG
* * * *
81667089 AATTTGAATTAAATAAAATTTTTTTCGGGATTTATTCCTGTCGTTTAACAAGATTTTATTTTATT
1 AATTT-AATTAAATAAAATATGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGATT
* *
81667154 TTATTTTATTTCCAAATTCG
65 TGATTTTATTTCCAAATTAG
* * * * *
81667174 AATTTGAATTAAATAAAATTTGTTTCGAGATTTATTCCTGCCGTTTAACAAGATTTTATTCGATA
1 AATTT-AATTAAATAAAATATGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGAT-
*
81667239 TT-ATTTTGTTTCCAAA
64 TTGATTTTATTTCCAAA
81667255 CAAAGACGTA
Statistics
Matches: 302, Mismatches: 30, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
84 154 0.51
85 146 0.48
86 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.47
Consensus pattern (84 bp):
AATTTAATTAAATAAAATATGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTTGATTT
GATTTTATTTCCAAATTAG
Found at i:81667290 original size:253 final size:253
Alignment explanation
Indices: 81666833--81667322 Score: 632
Period size: 253 Copynumber: 1.9 Consensus size: 253
81666823 TGCCAAAAAC
81666833 TAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTTG
1 TAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTTG
* *
81666898 ATTTGATTTTGTTTCCAAATTAGAATCTAATTAAATAAAATATGTTTCGGGATTTATTCCCGCCA
66 ATTTGATTTTATTTCCAAATTAGAATCTAATTAAATAAAATATGTTTCGAGATTTATTCCCGCCA
* * * * *
81666963 TTTAACAAGATTTGATTTGATTTGATTTGATTTCTAAATTAGAATATAATTAAATAAAATCTGTT
131 TTTAACAAGATTTGATTCGATTTGATTTGATTTCCAAATCAGAAGATAATCAAATAAAATCTGTT
* **
81667028 TCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTTT-ATTTTATTTTATTTCTAAAT
196 TCAGGATTTATTCCCACCGTTTAA-AAGATTTTATTTTGATTTTATTTTATTTCTAAAT
* * * * * * * *
81667086 TAGAATTTGAATTAAATAAAATTTTTTTCGGGATTTATTCCTGTCGTTTAACAAGATTTTATTTT
1 TAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTTG
* * * * *
81667151 ATTTTATTTTATTTCCAAATTCGAATTTGAATTAAATAAAATTTGTTTCGAGATTTATTCCTGCC
66 ATTTGATTTTATTTCCAAATTAGAATCT-AATTAAATAAAATATGTTTCGAGATTTATTCCCGCC
* * *
81667216 GTTTAACAAGATTTTATTCGATATT-ATTTTG-TTTCCAAA-CA-AAGACGTAATCAAAT-AATT
130 ATTTAACAAGATTTGATTCGAT-TTGA-TTTGATTTCCAAATCAGAAGA--TAATCAAATAAAAT
* *
81667276 CTGTTTCAGGATTTATTCTCACCGTTTAATAGATTTTATTTTGATTT
191 CTGTTTCAGGATTTATTCCCACCGTTTAAAAGATTTTATTTTGATTT
81667323 AATGATATAA
Statistics
Matches: 203, Mismatches: 28, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
252 15 0.07
253 114 0.56
254 68 0.33
255 6 0.03
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (253 bp):
TAGAAATTAAATTAAATAAAATATGTTCCAGGATTTATTCCCGTCGTTTAACAAGATTTTATTTG
ATTTGATTTTATTTCCAAATTAGAATCTAATTAAATAAAATATGTTTCGAGATTTATTCCCGCCA
TTTAACAAGATTTGATTCGATTTGATTTGATTTCCAAATCAGAAGATAATCAAATAAAATCTGTT
TCAGGATTTATTCCCACCGTTTAAAAGATTTTATTTTGATTTTATTTTATTTCTAAAT
Found at i:81677367 original size:14 final size:14
Alignment explanation
Indices: 81677348--81677377 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81677338 GAATTATATT
*
81677348 AATATTTTTTTTAA
1 AATATTTTTATTAA
81677362 AATATTTTTATTAA
1 AATATTTTTATTAA
81677376 AA
1 AA
81677378 ATTAATCCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATATTTTTATTAA
Found at i:81680799 original size:26 final size:26
Alignment explanation
Indices: 81680763--81681025 Score: 251
Period size: 26 Copynumber: 10.2 Consensus size: 26
81680753 GTACATAGTA
* * * *
81680763 CCTGATAAATATACATCGGCTTAAGG
1 CCTGTTAAATAAACACCGGCTCAAGG
* *
81680789 CCTGTTAAATAAACACAGACTCAAGG
1 CCTGTTAAATAAACACCGGCTCAAGG
**
81680815 CCTACTAAATAAACACCGGCTCAAGG
1 CCTGTTAAATAAACACCGGCTCAAGG
* ** *
81680841 CTTACTAAATAACCACCGGCTCAAGG
1 CCTGTTAAATAAACACCGGCTCAAGG
* * * *
81680867 CCTGCTAAATAACCACCGACTCAGGG
1 CCTGTTAAATAAACACCGGCTCAAGG
* **
81680893 CTTGTTAAATAAACACTAGCTCAAGG
1 CCTGTTAAATAAACACCGGCTCAAGG
* *
81680919 CCTTTTAAATAAACACCAGCTCAAGG
1 CCTGTTAAATAAACACCGGCTCAAGG
* * *
81680945 CCTGTTAAATAACCA-CAGCTCAATG
1 CCTGTTAAATAAACACCGGCTCAAGG
* *
81680970 CCTGTTAAAAAAACACCGGCTCAATG
1 CCTGTTAAATAAACACCGGCTCAAGG
* *
81680996 CCTGCTAAAT-AACTACCGACTCAAGG
1 CCTGTTAAATAAAC-ACCGGCTCAAGG
81681022 CCTG
1 CCTG
81681026 CTTTTCCAGT
Statistics
Matches: 199, Mismatches: 36, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
25 25 0.13
26 174 0.87
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (26 bp):
CCTGTTAAATAAACACCGGCTCAAGG
Found at i:81680902 original size:78 final size:77
Alignment explanation
Indices: 81680779--81681027 Score: 284
Period size: 78 Copynumber: 3.2 Consensus size: 77
81680769 AAATATACAT
* * * **
81680779 CGGCTTAAGGCCTGTTAAATAAACACAGACTCAAGGCCTACTAAATAAACACCGGCTCAAGGCTT
1 CGGCTCAAGGCCTGCTAAATAACCACAGACTCAAGGCCTGTTAAATAAACACCGGCTCAAGGCTT
81680844 ACTAAATAACCAC
66 -CTAAATAACCAC
* * * **
81680857 CGGCTCAAGGCCTGCTAAATAACCACCGACTCAGGGCTTGTTAAATAAACACTAGCTCAAGGCCT
1 CGGCTCAAGGCCTGCTAAATAACCACAGACTCAAGGCCTGTTAAATAAACACCGGCTCAAGG-CT
* *
81680922 TTTAAATAAACAC
65 TCTAAATAACCAC
* * * * *
81680935 CAGCTCAAGGCCTGTTAAATAACCACAG-CTCAATGCCTGTTAAAAAAACACCGGCTCAATGCCT
1 CGGCTCAAGGCCTGCTAAATAACCACAGACTCAAGGCCTGTTAAATAAACACCGGCTCAA-GGCT
* *
81680999 GCTAAATAACTAC
65 TCTAAATAACCAC
*
81681012 CGACTCAAGGCCTGCT
1 CGGCTCAAGGCCTGCT
81681028 TTTCCAGTAT
Statistics
Matches: 140, Mismatches: 29, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
77 49 0.35
78 88 0.63
79 3 0.02
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.20
Consensus pattern (77 bp):
CGGCTCAAGGCCTGCTAAATAACCACAGACTCAAGGCCTGTTAAATAAACACCGGCTCAAGGCTT
CTAAATAACCAC
Found at i:81683697 original size:21 final size:20
Alignment explanation
Indices: 81683673--81683717 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
81683663 CCTAACCTTA
81683673 AACCCTAAAATAAATAACCCT
1 AACCCTAAAATAAA-AACCCT
*
81683694 AACCCTAATAATCAAAACCCT
1 AACCCTAA-AATAAAAACCCT
81683715 AAC
1 AAC
81683718 ACTGAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (20 bp):
AACCCTAAAATAAAAACCCT
Found at i:81685661 original size:97 final size:97
Alignment explanation
Indices: 81685495--81685690 Score: 349
Period size: 97 Copynumber: 2.0 Consensus size: 97
81685485 AATTGTTGTC
* * *
81685495 TTGTTTACATTTTTTTTTTTAGGATAATTGAAGAGCAACTAACTTCTTTAGAGTCCAGAATCACA
1 TTGTTTACATATTTTTTTTTAGGATAATAGAAGAGCAACTAACTTCTTTAGAGTCAAGAATCACA
81685560 AATAGGGAAAATAGCATTTATCTACAAATGTT
66 AATAGGGAAAATAGCATTTATCTACAAATGTT
81685592 TTGTTTACA-ATTTTTTTTTAGGATAATAGAAGAGCAAACTAACTTCTTTAGAGTCAAGAATCAC
1 TTGTTTACATATTTTTTTTTAGGATAATAGAAGAGC-AACTAACTTCTTTAGAGTCAAGAATCAC
81685656 AAATAGGGAAAATAGCATTTATCTACAAATGTT
65 AAATAGGGAAAATAGCATTTATCTACAAATGTT
81685689 TT
1 TT
81685691 AAATCGAGTC
Statistics
Matches: 95, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
96 24 0.25
97 71 0.75
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (97 bp):
TTGTTTACATATTTTTTTTTAGGATAATAGAAGAGCAACTAACTTCTTTAGAGTCAAGAATCACA
AATAGGGAAAATAGCATTTATCTACAAATGTT
Found at i:81687839 original size:3 final size:3
Alignment explanation
Indices: 81687831--81687856 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
81687821 AACTTGATTT
81687831 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
81687857 GGCTGAGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:81691979 original size:46 final size:44
Alignment explanation
Indices: 81691926--81692101 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 44
81691916 TATTTGGGCA
81691926 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *** * *
81691972 TCCGAACTCGTTGAGTTAAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
*
81692019 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *
81692065 -CTCGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81692102 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 65 0.61
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:81692087 original size:93 final size:93
Alignment explanation
Indices: 81691922--81692094 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
81691912 GGGATATTTG
*
81691922 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
81691987 TTAAGTCCGAGTTCGAGAGATGTAACTA
66 TTAAGTCCGAGTTCGAGAGATGTAACTA
* * *
81692015 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
* *
81692079 TTTGAGTCCGAGTTCG
65 GTTAAGTCCGAGTTCG
81692095 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTAAGTCCGAGTTCGAGAGATGTAACTA
Found at i:81709120 original size:47 final size:49
Alignment explanation
Indices: 81709051--81709224 Score: 171
Period size: 49 Copynumber: 3.6 Consensus size: 49
81709041 GTATAATGCC
81709051 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAA-CAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACAATCAAGTT
* * * * *
81709098 GATGCCATGTCCCAAACATGGTCCTACACTGACT-ATCGA-AATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-ACAATC-AAGTT
* * * * *
81709147 GACGCCATGTCGCAGACATGGTCATACACTAGCTC-TCACATATC-TGTGT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACA-ATCAAGT-T
81709196 CGATGCCATGTCCCAGACATGGTCTTACA
1 -GATGCCATGTCCCAGACATGGTCTTACA
81709225 TTGACACATC
Statistics
Matches: 102, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
46 3 0.03
47 33 0.32
48 3 0.03
49 35 0.34
50 28 0.27
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACAATCAAGTT
Found at i:81709167 original size:49 final size:47
Alignment explanation
Indices: 81709054--81709176 Score: 131
Period size: 47 Copynumber: 2.6 Consensus size: 47
81709044 TAATGCCGAT
* * * * *
81709054 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAACAAGTTGAT
1 GCCATGTCCCAGACATGGTCATACACTGACTCATCAAACAAGCTGAC
* * *
81709101 GCCATGTCCCAAACATGGTCCTACACTGACT-ATCGAAATCGAGGCTGAC
1 GCCATGTCCCAGACATGGTCATACACTGACTCATC-AAA-C-AAGCTGAC
*
81709150 GCCATGTCGCAGACATGGTCATACACT
1 GCCATGTCCCAGACATGGTCATACACT
81709177 AGCTCTCACA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 3 0.05
47 30 0.48
48 1 0.02
49 29 0.46
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCATACACTGACTCATCAAACAAGCTGAC
Found at i:81709259 original size:45 final size:45
Alignment explanation
Indices: 81709196--81709364 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 45
81709186 ATATCTGTGT
* * *
81709196 CGATGCCATGTCCCAGACATGGTCTTACATTGAC-ACATCTCGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTACATCTCGAGGA
** *
81709242 CGATGCATGTCTTAGACATGTCTTACACTGGCTTACATCTCGAGGA
1 CGATGCATGTCCCAGACATGTCTTACACTGAC-TACATCTCGAGGA
* * *
81709288 CGATGCATGTCCCAAACATGTCTTACACTAGCACT-CATCTCAATG-
1 CGATGCATGTCCCAGACATGTCTTACACT-G-ACTACATCTCGAGGA
81709333 CTGATGCCATGTCCCAGACATGGTCTTACACT
1 C-GATG-CATGTCCCAGACAT-GTCTTACACT
81709365 TGCTCACAAT
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
44 11 0.11
45 13 0.13
46 53 0.51
47 15 0.15
48 11 0.11
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTACATCTCGAGGA
Found at i:81713058 original size:47 final size:47
Alignment explanation
Indices: 81712600--81713029 Score: 734
Period size: 47 Copynumber: 9.1 Consensus size: 47
81712590 GAAATGATAG
*
81712600 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
81712647 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
*
81712694 TAGGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
*
81712741 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAATGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
* *
81712788 TAGGGCCTAATAGCCGACGTGATGAATGTGAAAATGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
* *
81712835 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
*
81712882 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
* *
81712929 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
81712976 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
*
81713023 CAAGGCC
1 TAAGGCC
81713030 GAGTGGCCAA
Statistics
Matches: 368, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 368 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:81713248 original size:37 final size:37
Alignment explanation
Indices: 81713192--81713270 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
81713182 CCGAGTTCTA
* * *
81713192 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
81713229 AAGACCCGATAACTTCGTGTGGATATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
81713266 AAGAC
1 AAGAC
81713271 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:81735225 original size:22 final size:20
Alignment explanation
Indices: 81735190--81735232 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
81735180 ATATATGACT
*
81735190 GCATTAACCCTAGTCAATCAAA
1 GCATTAACACTAGT--ATCAAA
*
81735212 GCATTAACATTAGTATCAAA
1 GCATTAACACTAGTATCAAA
81735232 G
1 G
81735233 ATAACAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.26
Consensus pattern (20 bp):
GCATTAACACTAGTATCAAA
Found at i:81743116 original size:28 final size:28
Alignment explanation
Indices: 81743085--81743190 Score: 122
Period size: 28 Copynumber: 3.8 Consensus size: 28
81743075 GAAGTAGTTT
*
81743085 GGCCTAATGGTCCATATGAATGTGATTG
1 GGCCTAATGGGCCATATGAATGTGATTG
*
81743113 GGCCTAATGGGCCATTTGAATGTGATTG
1 GGCCTAATGGGCCATATGAATGTGATTG
* * * *
81743141 GGCCTGATGGGCCATGTGAACGAGATTG
1 GGCCTAATGGGCCATATGAATGTGATTG
* * *
81743169 GGCCCACAGGGGCCAAATGAAT
1 GGCCTA-ATGGGCCATATGAAT
81743191 AAGTATAGAT
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
28 54 0.83
29 11 0.17
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (28 bp):
GGCCTAATGGGCCATATGAATGTGATTG
Found at i:81743547 original size:27 final size:27
Alignment explanation
Indices: 81743493--81743831 Score: 314
Period size: 27 Copynumber: 12.7 Consensus size: 27
81743483 TAATAAAGAG
* *
81743493 AAATTACCGAAATA-CCTCGGTTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
81743519 AAATTACTGAAGTACCCCCGGTTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
81743546 AAATTAC-CAACGTACCCTCGGTTTGTA
1 AAATTACTGAA-ATACCCTCGATTTGTA
* *
81743573 AAATTACTGAAATACCC-CCAGCTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
81743600 AAATTATTGAAATACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
81743627 AAATTA-TCGAACTA-CCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
81743652 AAATTATTAAAATACCCTCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
81743679 AAATTATTGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
81743706 AAATTACTGAAACACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
81743733 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
81743760 AAATTACCGACATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
81743787 AAACTACTGAAACACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
81743814 AATTTA-TCGAAATACCCT
1 AAATTACT-GAAATACCCT
81743832 TGTAGTGTAA
Statistics
Matches: 265, Mismatches: 38, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
25 14 0.05
26 28 0.11
27 219 0.83
28 4 0.02
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:81743853 original size:81 final size:81
Alignment explanation
Indices: 81743692--81743857 Score: 208
Period size: 81 Copynumber: 2.0 Consensus size: 81
81743682 TTATTGAAAC
* ** * *
81743692 ACCCTCGATTTGTAAAATTACTGAAACACCTTCGATTTGTAAAATTACCGAAACACCCTCGATTT
1 ACCCTCGATTTGTAAAACTACTGAAACACCCCCAATTTGTAAAATTACCGAAACACCCTCGATGT
* *
81743757 GTAAAATTACCGACAT
66 GTAAAATGACAGACAT
* * * *
81743773 ACCCTCGATTTGTAAAACTACTGAAACACCCCCAATTTGTAAATTTATCGAAATACCCTTG-TAG
1 ACCCTCGATTTGTAAAACTACTGAAACACCCCCAATTTGTAAAATTACCGAAACACCCTCGAT-G
*
81743837 TGTAAAATGATAGACAT
65 TGTAAAATGACAGACAT
81743854 ACCC
1 ACCC
81743858 CTATAGGGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 71 0.99
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.29
Consensus pattern (81 bp):
ACCCTCGATTTGTAAAACTACTGAAACACCCCCAATTTGTAAAATTACCGAAACACCCTCGATGT
GTAAAATGACAGACAT
Found at i:81749945 original size:38 final size:40
Alignment explanation
Indices: 81749901--81750302 Score: 172
Period size: 47 Copynumber: 9.0 Consensus size: 40
81749891 CCGATGTGAA
81749901 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-----G
81749946 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 --GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-----G
*
81749993 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTG
1 --GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC-----G
* *
81750042 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCC-
1 --GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * **
81750083 G-ATGTGATGAA-TGTGA-A-A-GTGTATATGAGCC-GATGTG-AT
1 GAATGTGA--AAGTGT-ATATATGTG-ATAAG-GCCTAATG-GCCG
* *
81750122 GAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-----G
* * *
81750167 ATGAATGTGAAAGTGTATATGTGTAATAAGGCCTAATAGCCGATGTG
1 --GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-----G
*
81750214 ATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
1 --GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-----G
*
81750261 ATGAATGTGAAAGTGTATATATGTGATAAGGCATAATGGCCG
1 --GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
81750303 ATGTGATGAA
Statistics
Matches: 312, Mismatches: 20, Indels: 51
0.81 0.05 0.13
Matches are distributed among these distances:
37 3 0.01
38 15 0.05
39 18 0.06
40 15 0.05
41 3 0.01
42 1 0.00
47 211 0.68
49 46 0.15
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (40 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:81750052 original size:96 final size:96
Alignment explanation
Indices: 81749878--81750108 Score: 412
Period size: 96 Copynumber: 2.4 Consensus size: 96
81749868 GAAATGATAG
* *
81749878 TAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCG
81749941 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
81749972 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCG
*
81750037 ATGTGATGAATGTGAAAGTGTATATGTGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
81750068 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
81750109 GAGCCGATGT
Statistics
Matches: 131, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
94 35 0.27
96 96 0.73
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:81750109 original size:47 final size:47
Alignment explanation
Indices: 81749878--81750108 Score: 408
Period size: 47 Copynumber: 4.9 Consensus size: 47
81749868 GAAATGATAG
*
81749878 TAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
81749925 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
81749972 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
81750021 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
81750068 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
81750109 GAGCCGATGT
Statistics
Matches: 177, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 131 0.74
49 46 0.26
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:81750114 original size:31 final size:31
Alignment explanation
Indices: 81750079--81750140 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
81750069 AAGGCCTAAT
81750079 AGCCGATGTGATGAATGTGAAAGTGTATATG
1 AGCCGATGTGATGAATGTGAAAGTGTATATG
81750110 AGCCGATGTGATGAATGTGAAAGTGTATATG
1 AGCCGATGTGATGAATGTGAAAGTGTATATG
81750141 TGTGATAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.06, G:0.32, T:0.29
Consensus pattern (31 bp):
AGCCGATGTGATGAATGTGAAAGTGTATATG
Done.