Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 249 of 356
Found at i:81750121 original size:78 final size:77
Alignment explanation
Indices: 81750030--81750187 Score: 307
Period size: 78 Copynumber: 2.0 Consensus size: 77
81750020 ATAAGGCCTA
81750030 ATGACCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 ATGACCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAAT
81750095 GTGAAAGTGTAT
66 GTGAAAGTGTAT
81750107 ATGAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAA
1 ATGA-CCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAA
81750172 TGTGAAAGTGTAT
65 TGTGAAAGTGTAT
81750185 ATG
1 ATG
81750188 TGTAATAAGG
Statistics
Matches: 80, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 4 0.05
78 76 0.95
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (77 bp):
ATGACCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAAT
GTGAAAGTGTAT
Found at i:81750190 original size:125 final size:130
Alignment explanation
Indices: 81749983--81750333 Score: 489
Period size: 125 Copynumber: 2.6 Consensus size: 130
81749973 AAGGCCTAAT
81749983 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAAT
1 GGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG-CCGATGTGATGAAT
81750048 GTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TA-T-AT-
63 GTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATAGTAATA
81750109 G-A
128 GCA
*
81750111 -GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGT
*
81750175 GAAAGTGTATATGTGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
65 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG---ATA-GTAA
81750240 TAAGGCCTAA
126 T-A-G-C--A
*
81750250 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCATAATGGCCGATGTGATGAATG
1 -GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATG
*
81750315 TGAAAGTGTATATATGTGA
64 TGAAAGTGTATATGTGTGA
81750334 CGGGGCCGAG
Statistics
Matches: 199, Mismatches: 7, Indels: 21
0.88 0.03 0.09
Matches are distributed among these distances:
125 90 0.45
126 1 0.01
127 24 0.12
129 2 0.01
131 1 0.01
132 2 0.01
135 1 0.01
139 1 0.01
141 77 0.39
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (130 bp):
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTG
AAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATAGTAATAGCA
Found at i:81750249 original size:172 final size:173
Alignment explanation
Indices: 81749937--81750280 Score: 593
Period size: 172 Copynumber: 2.0 Consensus size: 173
81749927 AGGCCTAATG
*
81749937 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* * *
81750002 AAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATGTGTG
66 AAAGTG-ATATATATGTAATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTA
81750067 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGA
130 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGA
*
81750111 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
*
81750176 AAAGTG-TATATGTGTAATAAGGCCTAAT-AGCCGATGTGATGAATGTGAAAGTGTATATATGTA
66 AAAGTGATATATATGTAATAAGGCCTAATGA-CCGATGTGATGAATGTGAAAGTGTATATATGTA
*
81750239 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
130 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
81750281 ATGTGATAAG
Statistics
Matches: 162, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
171 1 0.01
172 92 0.57
174 69 0.43
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (173 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGATATATATGTAATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTAA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGA
Found at i:81750284 original size:221 final size:218
Alignment explanation
Indices: 81749890--81750327 Score: 734
Period size: 221 Copynumber: 2.0 Consensus size: 218
81749880 AGGCCTAATG
*
81749890 GCCGATGTGAAGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGAAGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* * *
81749955 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
66 AAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTA
*
81750020 ATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGA
130 ATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATA--TGTGATAAGGCATAATAGCCGA
81750085 TGTGATGAATGTGAAAGTGTATATGA
193 TGTGATGAATGTGAAAGTGTATATGA
* *
81750111 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGAAGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
*
81750176 AAAGTGTATATGTGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTAA
66 AAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTAA
* *
81750240 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCATAATGGCCGAT
131 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCATAATAGCCGAT
81750305 GTGATGAATGTGAAAGTGTATAT
194 GTGATGAATGTGAAAGTGTATAT
81750328 ATGTGACGGG
Statistics
Matches: 205, Mismatches: 10, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
219 89 0.43
221 116 0.57
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (218 bp):
GCCGATGTGAAGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTAA
TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCATAATAGCCGATGT
GATGAATGTGAAAGTGTATATGA
Found at i:81750348 original size:47 final size:47
Alignment explanation
Indices: 81750111--81750384 Score: 395
Period size: 47 Copynumber: 5.8 Consensus size: 47
81750101 GTGTATATGA
* *
81750111 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * *
81750158 GCCGATGTGATGAATGTGAAAGTGTATATGTGTAATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
81750205 GCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
81750252 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCATAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*** * *
81750299 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * * *
81750346 GCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
81750385 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 208 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
Found at i:81750559 original size:37 final size:37
Alignment explanation
Indices: 81750503--81750581 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
81750493 CCAAGCTCTA
* *
81750503 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
81750540 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
81750577 AAGAC
1 AAGAC
81750582 TTCATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:81753292 original size:29 final size:29
Alignment explanation
Indices: 81753234--81753333 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
81753224 ATAGTAAGTC
81753234 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
81753262 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
81753291 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
81753319 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81753334 ATGCAATTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
28 39 0.58
29 28 0.42
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:81753332 original size:28 final size:28
Alignment explanation
Indices: 81753234--81753361 Score: 168
Period size: 29 Copynumber: 4.5 Consensus size: 28
81753224 ATAGTAAGTC
*
81753234 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
81753262 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
81753291 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** *
81753319 TGCACACTTAGTGCTATGCAATTTAAAC-
1 CGCACACTTAGTGCTATATAA-TCAAACT
81753347 CTGCACACTTAGTGC
1 C-GCACACTTAGTGC
81753362 CAATCTCATG
Statistics
Matches: 89, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81757707 original size:29 final size:29
Alignment explanation
Indices: 81757644--81757711 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
81757634 TAATCAACCA
81757644 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
81757673 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
81757702 CGCACACTTA
1 CGCACACTTA
81757712 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:81757852 original size:29 final size:30
Alignment explanation
Indices: 81757813--81757891 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
81757803 CTTAATAATC
81757813 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
81757843 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
81757872 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
81757892 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:81760534 original size:36 final size:36
Alignment explanation
Indices: 81760487--81760560 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
81760477 AATACGACCC
81760487 TAATATAATCCTATAGACTTTAAATAAATATTAAAA
1 TAATATAATCCTATAGACTTTAAATAAATATTAAAA
81760523 TAATATAATCCTATAGACTTTAAATAAATATTAAAA
1 TAATATAATCCTATAGACTTTAAATAAATATTAAAA
81760559 TA
1 TA
81760561 TTTATTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (36 bp):
TAATATAATCCTATAGACTTTAAATAAATATTAAAA
Found at i:81762063 original size:19 final size:18
Alignment explanation
Indices: 81762041--81762079 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
81762031 TTTTTGAAAA
*
81762041 TTTATGTATTTATTGATTT
1 TTTATATATTT-TTGATTT
*
81762060 TTTATATATTTTTTATTT
1 TTTATATATTTTTGATTT
81762078 TT
1 TT
81762080 ATAAGAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (18 bp):
TTTATATATTTTTGATTT
Found at i:81762117 original size:25 final size:23
Alignment explanation
Indices: 81762075--81762125 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
81762065 ATATTTTTTA
81762075 TTTTTATAAGAATATTTTTTTGAAT
1 TTTTTATAAGAATA--TTTTTGAAT
** *
81762100 TTTTTATAATTATGTTTTTGAAT
1 TTTTTATAAGAATATTTTTGAAT
81762123 TTT
1 TTT
81762126 AGAATTGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 12 0.52
25 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (23 bp):
TTTTTATAAGAATATTTTTGAAT
Found at i:81775963 original size:27 final size:27
Alignment explanation
Indices: 81775932--81776109 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81775922 TGAATTGTAC
81775932 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81775959 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81775985 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81776013 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81776041 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81776068 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81776095 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81776110 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81776046 original size:82 final size:81
Alignment explanation
Indices: 81775933--81776088 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81775923 GAATTGTACA
* *
81775933 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81775997 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81776014 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81776079 TGCGAGTTGA
65 TGCGAATTGA
81776089 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81776100 original size:82 final size:81
Alignment explanation
Indices: 81775929--81776109 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81775919 GATTGAATTG
* *
81775929 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81775994 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81776010 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81776074 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81776092 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81776110 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81784058 original size:27 final size:27
Alignment explanation
Indices: 81784027--81784204 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81784017 TGAATTGTAC
81784027 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81784054 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81784080 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81784108 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81784136 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81784163 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81784190 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81784205 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81784141 original size:82 final size:81
Alignment explanation
Indices: 81784028--81784183 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81784018 GAATTGTACA
* *
81784028 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81784092 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81784109 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81784174 TGCGAGTTGA
65 TGCGAATTGA
81784184 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81784195 original size:82 final size:81
Alignment explanation
Indices: 81784024--81784204 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81784014 GATTGAATTG
* *
81784024 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81784089 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81784105 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81784169 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81784187 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81784205 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81794240 original size:27 final size:26
Alignment explanation
Indices: 81794210--81794283 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
81794200 CTACTGGCTA
81794210 TGCCACAAATATCTGTTCTGGA-AGCTC
1 TGCCAC-AATATCTGTTCTGGAGA-CTC
* *
81794237 TGCCACAATATCTGTATCTGGTGACTT
1 TGCCACAATATCTGT-TCTGGAGACTC
*
81794264 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
81794284 CAGCCATTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 14 0.33
27 27 0.64
28 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGAGACTC
Found at i:81801512 original size:8 final size:8
Alignment explanation
Indices: 81801499--81801538 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
81801489 CTAGATCGAC
81801499 AAAAGCCG
1 AAAAGCCG
81801507 AAAAGCCG
1 AAAAGCCG
*
81801515 AAGAGCCG
1 AAAAGCCG
*
81801523 AAATGCCG
1 AAAAGCCG
*
81801531 AAGAGCCG
1 AAAAGCCG
81801539 GCATTTTGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.42, C:0.25, G:0.30, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:81801523 original size:16 final size:16
Alignment explanation
Indices: 81801502--81801538 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
81801492 GATCGACAAA
81801502 AGCCGAAAAGCCGAAG
1 AGCCGAAAAGCCGAAG
*
81801518 AGCCGAAATGCCGAAG
1 AGCCGAAAAGCCGAAG
81801534 AGCCG
1 AGCCG
81801539 GCATTTTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.27, G:0.32, T:0.03
Consensus pattern (16 bp):
AGCCGAAAAGCCGAAG
Found at i:81801989 original size:27 final size:26
Alignment explanation
Indices: 81801951--81802037 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
81801941 TGGAGGAAGC
*
81801951 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
* * *
81801978 GTTCTGGTGGCTCTACTACACTATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
81802004 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
81802031 GTTCTGG
1 GTTCTGG
81802038 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
26 12 0.25
27 36 0.75
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:81813491 original size:28 final size:28
Alignment explanation
Indices: 81813459--81813527 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
81813449 AATGAGATTG
*
81813459 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
81813487 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
81813515 GCACTAAGTGTGC
1 GCACTAAGTGTGC
81813528 AGACTTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:81820641 original size:28 final size:28
Alignment explanation
Indices: 81820609--81820676 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
81820599 TGAGATTGGA
*
81820609 ACTAAGTGTGCGAGTTTAATT-GTATAGC
1 ACTAAGTGTGCGAGTTTAATTATTA-AGC
*
81820637 ACTAAGTGTGCGAGTTTGATTATTAAGC
1 ACTAAGTGTGCGAGTTTAATTATTAAGC
81820665 ACTAAGTGTGCG
1 ACTAAGTGTGCG
81820677 GGATTACTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTAATTATTAAGC
Found at i:81824332 original size:13 final size:13
Alignment explanation
Indices: 81824314--81824338 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81824304 GAAGCAATTG
81824314 CACACGGGCGTGT
1 CACACGGGCGTGT
81824327 CACACGGGCGTG
1 CACACGGGCGTG
81824339 CCCCTGTCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:81825908 original size:27 final size:27
Alignment explanation
Indices: 81825878--81826054 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
81825868 ATATTGAGTC
* *
81825878 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
81825905 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
81825932 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
81825960 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
81825987 CG-ACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
81826013 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
81826040 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81826055 GTACAATTCA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 21 0.17
27 82 0.65
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:81825997 original size:54 final size:54
Alignment explanation
Indices: 81825878--81826054 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
81825868 ATATTGAGTC
* * * * *
81825878 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
81825932 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
81825987 CG-ACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
81826040 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81826055 GTACAATTCA
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
53 28 0.27
54 48 0.47
55 27 0.26
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:81833970 original size:27 final size:27
Alignment explanation
Indices: 81833940--81834117 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81833930 ATATTGAGTC
* * * *
81833940 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
81833967 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81833994 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
81834022 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81834049 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81834076 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81834103 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81834118 GTACAATTCA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81834079 original size:82 final size:81
Alignment explanation
Indices: 81833961--81834116 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81833951 TGCTATATAA
* *
81833961 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
81834026 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
81834043 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
81834107 CACTTAGTGC
65 CACTTAGTGC
81834117 TGTACAATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81834129 original size:82 final size:83
Alignment explanation
Indices: 81833940--81834129 Score: 221
Period size: 82 Copynumber: 2.3 Consensus size: 83
81833930 ATATTGAGTC
* * * * *
81833940 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
81834004 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * **
81834022 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
81834083 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
81834103 CGCACACTTAGTGCTGTACAATTCAAT
1 CGCACACTTAGTGCTGTACAATTCAAT
81834130 CCCGCGCACT
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 69 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:81837694 original size:23 final size:23
Alignment explanation
Indices: 81837662--81837721 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
81837652 GTGACACCTG
* *
81837662 TGTGGAGTATTTTGTAAAGGCTT
1 TGTGGAGTATTCTGTAAAGCCTT
*
81837685 TGTGGTGTATTCTGTAAAGCCTT
1 TGTGGAGTATTCTGTAAAGCCTT
* *
81837708 TTTGGCGTATTCTG
1 TGTGGAGTATTCTG
81837722 ATACCTGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.17, C:0.10, G:0.28, T:0.45
Consensus pattern (23 bp):
TGTGGAGTATTCTGTAAAGCCTT
Found at i:81843848 original size:22 final size:21
Alignment explanation
Indices: 81843806--81843848 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
81843796 ATGCGTATTG
* *
81843806 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATCCATT
*
81843827 AGTTAGTAAAATGTATTCCATT
1 AGTTA-TAAAATGTAATCCATT
81843849 TATGTGTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (21 bp):
AGTTATAAAATGTAATCCATT
Found at i:81844731 original size:40 final size:40
Alignment explanation
Indices: 81844543--81844724 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
81844533 AATGATGTCC
* * * * * *
81844543 GGGCTAAGTCCCGAA-GTATTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCT
* * * * *
81844583 GGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCT
* *
81844623 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATTT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
*
81844662 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCT
*
81844702 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
81844725 AACGAGTAGC
Statistics
Matches: 116, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 31 0.27
40 73 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
Found at i:81851550 original size:27 final size:27
Alignment explanation
Indices: 81851519--81851696 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81851509 TGAATTGTAC
81851519 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81851546 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81851572 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81851600 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81851628 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81851655 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81851682 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81851697 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81851633 original size:82 final size:81
Alignment explanation
Indices: 81851520--81851675 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81851510 GAATTGTACA
* *
81851520 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81851584 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81851601 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81851666 TGCGAGTTGA
65 TGCGAATTGA
81851676 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81851687 original size:82 final size:81
Alignment explanation
Indices: 81851516--81851696 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81851506 GATTGAATTG
* *
81851516 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81851581 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81851597 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81851661 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81851679 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81851697 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81859639 original size:27 final size:27
Alignment explanation
Indices: 81859608--81859785 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
81859598 TGAATTGTAC
81859608 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81859635 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81859661 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81859689 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81859717 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81859744 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
81859771 AGAACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81859786 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81859722 original size:82 final size:81
Alignment explanation
Indices: 81859609--81859764 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81859599 GAATTGTACA
* *
81859609 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81859673 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81859690 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81859755 TGCGAGTTGA
65 TGCGAATTGA
81859765 TTATATAGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81859782 original size:82 final size:81
Alignment explanation
Indices: 81859605--81859785 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
81859595 GATTGAATTG
* * *
81859605 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGAACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81859670 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
81859686 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGAACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81859750 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81859768 TATAGAACTGAGTGTGCG
1 TACAGAACTAAGTGTGCG
81859786 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGAACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81865085 original size:18 final size:18
Alignment explanation
Indices: 81865062--81865097 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81865052 CCATATATTT
81865062 CATTAATTTCACATTTTA
1 CATTAATTTCACATTTTA
81865080 CATTAATTTCACATTTTA
1 CATTAATTTCACATTTTA
81865098 GTCCCTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
CATTAATTTCACATTTTA
Found at i:81870552 original size:27 final size:27
Alignment explanation
Indices: 81870522--81870699 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
81870512 ATATTGAGCC
* *
81870522 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
81870549 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
81870576 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
81870604 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
81870631 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
81870658 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
81870685 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81870700 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:81870634 original size:55 final size:54
Alignment explanation
Indices: 81870522--81870699 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
81870512 ATATTGAGCC
* * * * *
81870522 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
81870576 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
81870631 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
81870685 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81870700 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:81886638 original size:69 final size:69
Alignment explanation
Indices: 81886556--81886693 Score: 217
Period size: 69 Copynumber: 2.0 Consensus size: 69
81886546 AGGCTTACTT
*
81886556 GGCCTCTCCCTCTTGGTTACTCAAAGTCGGT-ATAGAATCAACCAGC-TCTGTCCCTTACGCGGG
1 GGCCTCTCCCTCTTGGTTACTCAAAGTCGGTCA-AGAATCAACCAGCGT-TGTCCCTTACGCAGG
81886619 ATCAGG
64 ATCAGG
* *
81886625 GGCCTCTCCCTCTTGGTTACTCAAAGTCGGTCAAGAATCAACCGGCGTTGTCCCTTACGTAGGAT
1 GGCCTCTCCCTCTTGGTTACTCAAAGTCGGTCAAGAATCAACCAGCGTTGTCCCTTACGCAGGAT
81886690 CAGG
66 CAGG
81886694 CGCTATACTC
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
69 62 0.97
70 2 0.03
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (69 bp):
GGCCTCTCCCTCTTGGTTACTCAAAGTCGGTCAAGAATCAACCAGCGTTGTCCCTTACGCAGGAT
CAGG
Found at i:81887771 original size:21 final size:20
Alignment explanation
Indices: 81887730--81887771 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
81887720 TATCACCTAA
*
81887730 CCAAATACAAATATATTTAC
1 CCAAATACAAATATATATAC
81887750 CCAAATACCAAACT-TATATAC
1 CCAAATA-CAAA-TATATATAC
81887771 C
1 C
81887772 ATGTAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 11 0.58
22 1 0.05
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (20 bp):
CCAAATACAAATATATATAC
Found at i:81900575 original size:14 final size:15
Alignment explanation
Indices: 81900558--81900586 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81900548 TCACGAAAAT
81900558 TTCACACAT-ATAAA
1 TTCACACATAATAAA
81900572 TTCACACATAATAAA
1 TTCACACATAATAAA
81900587 CATAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:81907174 original size:16 final size:16
Alignment explanation
Indices: 81907149--81907179 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81907139 TATTAAACAA
81907149 TTTTTAAAATTATAAT
1 TTTTTAAAATTATAAT
*
81907165 TTTTTTAAATTATAA
1 TTTTTAAAATTATAA
81907180 ACATAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTTTAAAATTATAAT
Found at i:81907290 original size:25 final size:24
Alignment explanation
Indices: 81907261--81907317 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 24
81907251 AGTTTAACTA
*
81907261 TAAAATAGAGTT-AAACATGATTTTT
1 TAAAATAGA-TTAAAAAAT-ATTTTT
*
81907286 TAAAAATATATTAAAAAATATTTTT
1 T-AAAATAGATTAAAAAATATTTTT
81907311 TAAAATA
1 TAAAATA
81907318 CTGTTGTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 6 0.21
25 10 0.36
26 12 0.43
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (24 bp):
TAAAATAGATTAAAAAATATTTTT
Found at i:81907291 original size:26 final size:25
Alignment explanation
Indices: 81907262--81907315 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
81907252 GTTTAACTAT
*
81907262 AAAATAGAGTT-AAACATGATTTTTTA
1 AAAATAGA-TTAAAAAAT-ATTTTTTA
*
81907288 AAAATATATTAAAAAATATTTTTTA
1 AAAATAGATTAAAAAATATTTTTTA
81907313 AAA
1 AAA
81907316 TACTGTTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.39
Consensus pattern (25 bp):
AAAATAGATTAAAAAATATTTTTTA
Found at i:81909009 original size:17 final size:17
Alignment explanation
Indices: 81908989--81909022 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81908979 AAATAATTTA
*
81908989 GAAAATAAGTTTCAATT
1 GAAAATAAGGTTCAATT
*
81909006 GAAACTAAGGTTCAATT
1 GAAAATAAGGTTCAATT
81909023 TGGAAAAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (17 bp):
GAAAATAAGGTTCAATT
Found at i:81910162 original size:24 final size:24
Alignment explanation
Indices: 81910093--81910163 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 24
81910083 CCAGAAACTA
* * **
81910093 CGAACCCCTATCACAAGATACCTG
1 CGAACCCCTATCACTAGACATGTG
* * * *
81910117 TGAACCCTTATCACTTGTCATGTG
1 CGAACCCCTATCACTAGACATGTG
81910141 CGAACCCCTATCACTAGACATGT
1 CGAACCCCTATCACTAGACATGT
81910164 ATGAATTCAT
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.25
Consensus pattern (24 bp):
CGAACCCCTATCACTAGACATGTG
Found at i:81910953 original size:21 final size:20
Alignment explanation
Indices: 81910904--81910951 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
81910894 AGGGACTAAA
* *
81910904 ATGAAAAGTTGTAAAATTTT
1 ATGAAAAATTCTAAAATTTT
81910924 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTT
81910944 ATGAAAAA
1 ATGAAAAA
81910952 ATGTGCTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.35
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTT
Found at i:81913089 original size:24 final size:24
Alignment explanation
Indices: 81913062--81913111 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
81913052 GGGGTGTTAG
*
81913062 ACCTATGAACCCCTATCACTAGAT
1 ACCTATGAACCCCTATCACCAGAT
81913086 ACCTATGAACCCCTATCACCAGAT
1 ACCTATGAACCCCTATCACCAGAT
81913110 AC
1 AC
81913112 AAGGAAACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.36, G:0.08, T:0.22
Consensus pattern (24 bp):
ACCTATGAACCCCTATCACCAGAT
Found at i:81913120 original size:24 final size:24
Alignment explanation
Indices: 81913068--81913124 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
81913058 TTAGACCTAT
* * *
81913068 GAACCCCTATCACTAGATACCTAT
1 GAACCCCTATCACCAGATACCAAG
81913092 GAACCCCTATCACCAGATA-CAAG
1 GAACCCCTATCACCAGATACCAAG
81913115 GAAACCCCTA
1 G-AACCCCTA
81913125 CCACTCGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 3 0.10
24 26 0.90
ACGTcount: A:0.37, C:0.35, G:0.11, T:0.18
Consensus pattern (24 bp):
GAACCCCTATCACCAGATACCAAG
Found at i:81913223 original size:23 final size:23
Alignment explanation
Indices: 81913188--81913289 Score: 86
Period size: 23 Copynumber: 4.6 Consensus size: 23
81913178 GTGACTGGTT
* *
81913188 GTGATGTGGGAACCTATGCTAAA
1 GTGATATGCGAACCTATGCTAAA
* *
81913211 GTGATATGCGAACC--TGTTATA
1 GTGATATGCGAACCTATGCTAAA
*
81913232 -T-ATCATGCGAACCTACGCTAAA
1 GTGAT-ATGCGAACCTATGCTAAA
* * *
81913254 GTGATATGCGAGCCTATACTAAT
1 GTGATATGCGAACCTATGCTAAA
*
81913277 TTGATATGCGAAC
1 GTGATATGCGAAC
81913290 TGTGATTATG
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.03
20 10 0.16
21 5 0.08
22 4 0.07
23 38 0.62
24 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (23 bp):
GTGATATGCGAACCTATGCTAAA
Found at i:81915517 original size:25 final size:25
Alignment explanation
Indices: 81915485--81915541 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 25
81915475 TCTTGTTTTA
* *
81915485 ATTTATTT-TTATGTTTTTAAATGT
1 ATTTATTTATTATATTTTAAAATGT
81915509 ATTTGATTTATTATATTTTAAAAT-T
1 ATTT-ATTTATTATATTTTAAAATGT
81915534 -TTTATTTA
1 ATTTATTTA
81915542 ATAAAATAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 5 0.17
24 7 0.24
25 5 0.17
26 12 0.41
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (25 bp):
ATTTATTTATTATATTTTAAAATGT
Found at i:81916220 original size:7 final size:7
Alignment explanation
Indices: 81916208--81916240 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
81916198 CACTTATTCA
81916208 TCATCCC
1 TCATCCC
81916215 TCATCCC
1 TCATCCC
81916222 TCATCCC
1 TCATCCC
*
81916229 TCATCCA
1 TCATCCC
81916236 TCATC
1 TCATC
81916241 ATTCAACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.52, G:0.00, T:0.30
Consensus pattern (7 bp):
TCATCCC
Found at i:81919069 original size:93 final size:93
Alignment explanation
Indices: 81918900--81919070 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
81918890 GGATGGTTGA
* *
81918900 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
**
81918965 TGAGTTTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
81918993 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGAG
81919057 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
81919071 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81919073 original size:46 final size:46
Alignment explanation
Indices: 81918904--81919075 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
81918894 GGTTGAGCAT
* *
81918904 CTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTC
1 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-C
** * * *
81918951 C-GAACTCGTTGAGTTGAGTTTGAGTTC-GTGA--GATG-TAACTAGGC
1 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
81918995 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
81919043 CTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81919076 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 14, Indels: 21
0.74 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 56 0.55
47 25 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:81923954 original size:40 final size:39
Alignment explanation
Indices: 81923910--81924206 Score: 351
Period size: 40 Copynumber: 7.7 Consensus size: 39
81923900 GCTCCTCGTT
* * *
81923910 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
81923950 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
81923990 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
81924030 CAAATGCCTTCGGGACTT---CC-GATTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* *
81924064 CAAATGCCTTCGGGACTTAACCCGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* *
81924103 CAAATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCA
* * * *
81924142 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
81924183 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81924207 CAGCATTCAA
Statistics
Matches: 229, Mismatches: 16, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
34 25 0.11
35 5 0.02
36 2 0.01
37 4 0.02
38 15 0.07
39 63 0.28
40 109 0.48
41 6 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:81931911 original size:40 final size:39
Alignment explanation
Indices: 81931867--81932124 Score: 307
Period size: 40 Copynumber: 6.7 Consensus size: 39
81931857 GCTCCTCGTT
* * * *
81931867 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCA
81931907 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTCGCA
81931947 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTCGCA
*
81931987 CAAATGCCTTC-GGACTTAACCCGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
81932025 CAAATGCCTTCGGGACTT-A-CCGGATTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
** * * *
81932061 C-AATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TAGTAAC-TCGCA
*
81932101 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
81932125 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 10, Indels: 19
0.87 0.04 0.08
Matches are distributed among these distances:
34 3 0.02
35 12 0.06
36 8 0.04
37 15 0.08
38 28 0.14
39 37 0.19
40 95 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
Found at i:81934743 original size:78 final size:78
Alignment explanation
Indices: 81934614--81934771 Score: 289
Period size: 78 Copynumber: 2.0 Consensus size: 78
81934604 TGCAGTGGTG
* *
81934614 TTTGCTTTGAGGATTTGGCGACATTATTTGTATGGTGTAATGTGCCGAGTATATACCGATCACAA
1 TTTGCTTTGAGGATTTGGCGACATTATTTGTATGGTGAAAAGTGCCGAGTATATACCGATCACAA
81934679 AAGACTTAAATAC
66 AAGACTTAAATAC
81934692 TTTGCTTTGAGGATTTGGCGACATTATTTGTATGGTGAAAAGTGCCGAGTATATACCGATCACAA
1 TTTGCTTTGAGGATTTGGCGACATTATTTGTATGGTGAAAAGTGCCGAGTATATACCGATCACAA
*
81934757 AAGTCTTAAATAC
66 AAGACTTAAATAC
81934770 TT
1 TT
81934772 GATGTCACAA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.35
Consensus pattern (78 bp):
TTTGCTTTGAGGATTTGGCGACATTATTTGTATGGTGAAAAGTGCCGAGTATATACCGATCACAA
AAGACTTAAATAC
Found at i:81937902 original size:93 final size:93
Alignment explanation
Indices: 81937743--81937913 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
81937733 GGATGGTTGA
* * *
81937743 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
81937808 TGAGTCCGAGTTCGTAAGATGTAACTAG
66 TGAGTCCGAGTTCGTAAGATGTAACTAG
* *
81937836 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
81937901 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81937914 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTAAGATGTAACTAG
Found at i:81937916 original size:46 final size:46
Alignment explanation
Indices: 81937749--81937918 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
81937739 TTGAGCATCT
* * *
81937749 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
* * *
81937795 GAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CC
81937842 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
*
81937888 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81937919 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 57 0.54
47 27 0.25
48 2 0.02
49 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
Found at i:81940932 original size:17 final size:15
Alignment explanation
Indices: 81940907--81940951 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 15
81940897 CCAAAAAATT
81940907 AAATAAATAAAAATAACA
1 AAAT-AATAAAAAT-A-A
81940925 AAATAATAAAAATAA
1 AAATAATAAAAATAA
81940940 AAATAATTAAAA
1 AAATAA-TAAAA
81940952 GTTGACACGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 7 0.27
16 6 0.23
17 9 0.35
18 4 0.15
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATAATAAAAATAA
Found at i:81944203 original size:8 final size:8
Alignment explanation
Indices: 81944170--81944196 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
81944160 GAAGAAGGAC
81944170 AAAAAGAA
1 AAAAAGAA
81944178 AAAAAGAA
1 AAAAAGAA
81944186 AAAAAGAA
1 AAAAAGAA
81944194 AAA
1 AAA
81944197 GAAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:81946351 original size:31 final size:30
Alignment explanation
Indices: 81946280--81946352 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
81946270 TTTTAGTCTG
* * *
81946280 TGAACCTGGCAATTGGGTCCACTTTGGTAC
1 TGAACTTGGCAACTAGGTCCACTTTGGTAC
* *
81946310 TGAACTTGGCAACTAGGTCCATTTTGGTCC
1 TGAACTTGGCAACTAGGTCCACTTTGGTAC
*
81946340 TTGCACTTGGCAA
1 -TGAACTTGGCAA
81946353 ATGTAAAAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 25 0.69
31 11 0.31
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.32
Consensus pattern (30 bp):
TGAACTTGGCAACTAGGTCCACTTTGGTAC
Found at i:81953603 original size:16 final size:18
Alignment explanation
Indices: 81953568--81953607 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
81953558 AGGATAGTGA
81953568 GGAAGATGAGAAAGAAAT
1 GGAAGATGAGAAAGAAAT
*
81953586 GGAAG-TGAGGAA-AAAT
1 GGAAGATGAGAAAGAAAT
81953602 GGAAGA
1 GGAAGA
81953608 AACTCTTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 9 0.45
17 6 0.30
18 5 0.25
ACGTcount: A:0.53, C:0.00, G:0.38, T:0.10
Consensus pattern (18 bp):
GGAAGATGAGAAAGAAAT
Found at i:81955716 original size:47 final size:47
Alignment explanation
Indices: 81955663--81955756 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
81955653 TTTATAAGCT
*
81955663 CGTTGATACTAAAACCAAACAAGGTGGATATGACGGTGATATAGGGA
1 CGTTGATACTAAAACCAAAAAAGGTGGATATGACGGTGATATAGGGA
*
81955710 CGTTGATACTAAGACCAAAAAAGGTGGATATGACGGTGATATAGGGA
1 CGTTGATACTAAAACCAAAAAAGGTGGATATGACGGTGATATAGGGA
81955757 TGTTCACCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.38, C:0.12, G:0.29, T:0.21
Consensus pattern (47 bp):
CGTTGATACTAAAACCAAAAAAGGTGGATATGACGGTGATATAGGGA
Found at i:81956910 original size:26 final size:26
Alignment explanation
Indices: 81956874--81956923 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
81956864 CAACACACCG
81956874 ATATCGCAGCAAAGCTACCAGTAATA
1 ATATCGCAGCAAAGCTACCAGTAATA
* * *
81956900 ATATTGCAGCACAGCTGCCAGTAA
1 ATATCGCAGCAAAGCTACCAGTAA
81956924 CAGTAACGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (26 bp):
ATATCGCAGCAAAGCTACCAGTAATA
Found at i:81957122 original size:26 final size:28
Alignment explanation
Indices: 81957085--81957138 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
81957075 ATCATAACAC
81957085 AAATCAGTCA-TTTACCCTCAAGGGGTA
1 AAATCAGTCATTTTACCCTCAAGGGGTA
**
81957112 AAAT-AGTCATTTTACCCTTTAGGGGTA
1 AAATCAGTCATTTTACCCTCAAGGGGTA
81957139 TTTTGGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTCAAGGGGTA
Found at i:81958619 original size:24 final size:24
Alignment explanation
Indices: 81958591--81958646 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
81958581 TCCTAAAATC
81958591 TCTCCATAATCCTCTCATTGATTT
1 TCTCCATAATCCTCTCATTGATTT
** *
81958615 TCTCCCCAATCCTCTCCTTGATTT
1 TCTCCATAATCCTCTCATTGATTT
*
81958639 CCTCCATA
1 TCTCCATA
81958647 TAACACTCCC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.18, C:0.38, G:0.04, T:0.41
Consensus pattern (24 bp):
TCTCCATAATCCTCTCATTGATTT
Found at i:81964700 original size:26 final size:26
Alignment explanation
Indices: 81964671--81964744 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
81964661 ATAATATCAC
*
81964671 AGCAGAGCTGCCAGTAACAGTAACGT
1 AGCAAAGCTGCCAGTAACAGTAACGT
81964697 AGCAAAGCTGCCAGTAACAGTAACGT
1 AGCAAAGCTGCCAGTAACAGTAACGT
* *
81964723 AGCAAAACTGCCAGTATCAGTA
1 AGCAAAGCTGCCAGTAACAGTA
81964745 TATGTGGCAG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
AGCAAAGCTGCCAGTAACAGTAACGT
Found at i:81964928 original size:27 final size:27
Alignment explanation
Indices: 81964880--81964956 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 27
81964870 TAACACAAAT
** *
81964880 TAGTCA-TTTACCCTCGATGGGTAAAA
1 TAGTCATTTTACCCTTTAGGGGTAAAA
***
81964906 TAGTCATTTTACCCTTTAGGGGTATTT
1 TAGTCATTTTACCCTTTAGGGGTAAAA
*
81964933 TGGTCATTTTACCTACTTTAGGGG
1 TAGTCATTTTACC--CTTTAGGGG
81964957 CTAGGTACTC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 6 0.15
27 26 0.63
29 9 0.22
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (27 bp):
TAGTCATTTTACCCTTTAGGGGTAAAA
Found at i:81965525 original size:30 final size:30
Alignment explanation
Indices: 81965491--81965552 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
81965481 GTTCTTTATA
81965491 CTAAAACCCAAATCATCACTCACTACTCAC
1 CTAAAACCCAAATCATCACTCACTACTCAC
* *
81965521 CTAAAACCCAAATCGTCGCTCACTACTCAC
1 CTAAAACCCAAATCATCACTCACTACTCAC
81965551 CT
1 CT
81965553 TGAACGAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.35, C:0.40, G:0.03, T:0.21
Consensus pattern (30 bp):
CTAAAACCCAAATCATCACTCACTACTCAC
Found at i:81966413 original size:24 final size:24
Alignment explanation
Indices: 81966385--81966432 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
81966375 TCCTAAAATC
*
81966385 TCTCCATAATCCTCTCATTGATTT
1 TCTCCACAATCCTCTCATTGATTT
* * *
81966409 TCTCCCCAATCTTCTCCTTGATTT
1 TCTCCACAATCCTCTCATTGATTT
81966433 CCTCTACATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.33, G:0.04, T:0.46
Consensus pattern (24 bp):
TCTCCACAATCCTCTCATTGATTT
Found at i:81971753 original size:39 final size:40
Alignment explanation
Indices: 81971658--81971919 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
81971648 TTGAATGATG
*
81971658 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
81971696 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
81971737 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
81971776 TCCGGGCTAAG-CCCGAAGGCATTTTTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
81971815 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
81971854 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
81971893 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81971920 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 128 0.64
40 59 0.30
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81979731 original size:38 final size:39
Alignment explanation
Indices: 81979606--81979863 Score: 291
Period size: 38 Copynumber: 6.6 Consensus size: 39
81979596 TTGAATGATG
*
81979606 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
81979644 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
81979685 TCCGGGCTAAGCCCGAAGGCATTTGTGC-AGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
81979723 TCCAGGCTAAGCCCGAAGGCATTT-TGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
81979761 T-CGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
81979799 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
81979838 AACCGGGCTATGTCCGAAGGCATTTG
1 -TCCGGGCTAAGCCCGAAGGCATTTG
81979864 AACGAGGAGC
Statistics
Matches: 192, Mismatches: 17, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
37 24 0.12
38 57 0.30
39 56 0.29
40 43 0.22
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81992808 original size:22 final size:24
Alignment explanation
Indices: 81992754--81992808 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
81992744 ATTTTTAATT
*
81992754 AAATATTTTATTCTTTAAATTTTA
1 AAATATTTTATTCTGTAAATTTTA
* *
81992778 AAAGAATTTT-TT-TGTAATTTTTA
1 AAA-TATTTTATTCTGTAAATTTTA
81992801 AAATATTT
1 AAATATTT
81992809 CTCTTCTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 4 0.15
23 12 0.46
24 5 0.19
25 5 0.19
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (24 bp):
AAATATTTTATTCTGTAAATTTTA
Found at i:81994606 original size:4 final size:4
Alignment explanation
Indices: 81994597--81994627 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
81994587 CATTTCATAT
81994597 ACAG ACAG ACAG ACAG ACAG ACAG ACAG ACA
1 ACAG ACAG ACAG ACAG ACAG ACAG ACAG ACA
81994628 TGCATTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.26, G:0.23, T:0.00
Consensus pattern (4 bp):
ACAG
Found at i:82008615 original size:49 final size:50
Alignment explanation
Indices: 82008543--82008669 Score: 166
Period size: 50 Copynumber: 2.6 Consensus size: 50
82008533 CTGGTATGCA
* * * ** *
82008543 TAGTAGCCTGCACATAGTGCTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACG
* * *
82008592 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACG
82008642 TAGTAGCCTGCACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
82008670 TGATCACATT
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 28 0.42
50 39 0.58
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACG
Found at i:82008951 original size:9 final size:9
Alignment explanation
Indices: 82008937--82008961 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
82008927 TGATTTGCTG
82008937 ATTAGTTAA
1 ATTAGTTAA
82008946 ATTAGTTAA
1 ATTAGTTAA
82008955 ATTAGTT
1 ATTAGTT
82008962 TTAACAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (9 bp):
ATTAGTTAA
Found at i:82009248 original size:17 final size:18
Alignment explanation
Indices: 82009216--82009250 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
82009206 ATAATTTTTA
82009216 AATGTGTCTAAATTAATT
1 AATGTGTCTAAATTAATT
*
82009234 AATGTG-CTGAATTAATT
1 AATGTGTCTAAATTAATT
82009251 TGTGTGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (18 bp):
AATGTGTCTAAATTAATT
Found at i:82010310 original size:20 final size:20
Alignment explanation
Indices: 82010287--82010340 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
82010277 AGCTCCGTCC
82010287 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
** *
82010307 AGCTC-GTTCCAGCTCGTTTG
1 AGCTCAACT-CAGCTCATTTG
*
82010327 AGCTCAACTGAGCT
1 AGCTCAACTCAGCT
82010341 TACTTTCAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:82012817 original size:12 final size:12
Alignment explanation
Indices: 82012802--82012863 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 12
82012792 GAAAGAAAAA
82012802 GAAAAAGAGATT
1 GAAAAAGAGATT
** * **
82012814 GAAAGTGAAAAA
1 GAAAAAGAGATT
*
82012826 GAAAATGAGATT
1 GAAAAAGAGATT
*
82012838 GAAAAAGAGAAT
1 GAAAAAGAGATT
*
82012850 GAAAAAGAGTTT
1 GAAAAAGAGATT
82012862 GA
1 GA
82012864 GAGAGAAAAA
Statistics
Matches: 37, Mismatches: 13, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (12 bp):
GAAAAAGAGATT
Found at i:82012823 original size:18 final size:18
Alignment explanation
Indices: 82012802--82012853 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
82012792 GAAAGAAAAA
*
82012802 GAAAAAGAGATTGAAAGT
1 GAAAAAGAGAATGAAAGT
* * *
82012820 GAAAAAGAAAATGAGATT
1 GAAAAAGAGAATGAAAGT
82012838 GAAAAAGAGAATGAAA
1 GAAAAAGAGAATGAAA
82012854 AAGAGTTTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.62, C:0.00, G:0.25, T:0.13
Consensus pattern (18 bp):
GAAAAAGAGAATGAAAGT
Found at i:82012828 original size:24 final size:24
Alignment explanation
Indices: 82012795--82012876 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
82012785 AAGAAATGAA
82012795 AGAAAAAGAAAAAGAGATTGAAAG
1 AGAAAAAGAAAAAGAGATTGAAAG
* * *
82012819 TGAAAAAGAAAATGAGATTGAAAA
1 AGAAAAAGAAAAAGAGATTGAAAG
* * * *
82012843 AGAGAATGAAAAAGAGTTTGAGAG
1 AGAAAAAGAAAAAGAGATTGAAAG
82012867 AGAAAAAGAA
1 AGAAAAAGAA
82012877 TGTGAACAAG
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.62, C:0.00, G:0.26, T:0.12
Consensus pattern (24 bp):
AGAAAAAGAAAAAGAGATTGAAAG
Found at i:82012905 original size:18 final size:19
Alignment explanation
Indices: 82012869--82012907 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
82012859 TTTGAGAGAG
*
82012869 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
82012888 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
82012906 AA
1 AA
82012908 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:82014519 original size:10 final size:10
Alignment explanation
Indices: 82014506--82014540 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
82014496 AGCTCAACTC
82014506 AGCTCGTTTG
1 AGCTCGTTTG
82014516 AGCTCGTTCT-
1 AGCTCGTT-TG
82014526 AGCTCGTTTG
1 AGCTCGTTTG
82014536 AGCTC
1 AGCTC
82014541 AACCGAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 1 0.04
10 21 0.91
11 1 0.04
ACGTcount: A:0.11, C:0.26, G:0.26, T:0.37
Consensus pattern (10 bp):
AGCTCGTTTG
Found at i:82014519 original size:20 final size:21
Alignment explanation
Indices: 82014496--82014543 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
82014486 AGCTCCGTCC
82014496 AGCTCAACTC-AGCTCGTTTG
1 AGCTCAACTCTAGCTCGTTTG
**
82014516 AGCTC-GTTCTAGCTCGTTTG
1 AGCTCAACTCTAGCTCGTTTG
82014536 AGCTCAAC
1 AGCTCAAC
82014544 CGAGCTTACT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (21 bp):
AGCTCAACTCTAGCTCGTTTG
Found at i:82014549 original size:20 final size:19
Alignment explanation
Indices: 82014496--82014549 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
82014486 AGCTCCGTCC
82014496 AGCTCAACTCAGCTCGTTTG
1 AGCTCAAC-CAGCTCGTTTG
** *
82014516 AGCTCGTTCTAGCTCGTTTG
1 AGCTC-AACCAGCTCGTTTG
82014536 AGCTCAACCGAGCT
1 AGCTCAACC-AGCT
82014550 TACTTTCAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.30
Consensus pattern (19 bp):
AGCTCAACCAGCTCGTTTG
Found at i:82020909 original size:19 final size:19
Alignment explanation
Indices: 82020867--82020909 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
82020857 ATTATGATTC
82020867 AAAAATAAGCTACAATACA
1 AAAAATAAGCTACAATACA
* *
82020886 TAAAATATGCTGA-AATACA
1 AAAAATAAGCT-ACAATACA
82020905 AAAAA
1 AAAAA
82020910 CATAATAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.63, C:0.12, G:0.07, T:0.19
Consensus pattern (19 bp):
AAAAATAAGCTACAATACA
Found at i:82021272 original size:30 final size:30
Alignment explanation
Indices: 82021237--82021297 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
82021227 TCCTTAACTC
82021237 AAAC-TTTGACAAAATTACAATTTTGCCCCT
1 AAACTTTTG-CAAAATTACAATTTTGCCCCT
* * *
82021267 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
82021297 A
1 A
82021298 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:82025407 original size:8 final size:8
Alignment explanation
Indices: 82025382--82025433 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
82025372 ATGAATCGGT
*
82025382 AAAAGCTG
1 AAAAGCCG
* *
82025390 AAATGTCG
1 AAAAGCCG
82025398 AAAAGCCG
1 AAAAGCCG
82025406 AAAAGCCG
1 AAAAGCCG
*
82025414 AAATGCCG
1 AAAAGCCG
82025422 AAAAGCC-
1 AAAAGCCG
82025429 AAAAG
1 AAAAG
82025434 TTTGGCTACG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
7 5 0.14
8 32 0.86
ACGTcount: A:0.50, C:0.19, G:0.23, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:82025416 original size:24 final size:23
Alignment explanation
Indices: 82025382--82025433 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
82025372 ATGAATCGGT
* *
82025382 AAAAGCTGAAATGTCGAAAAGCC
1 AAAAGCCGAAATGCCGAAAAGCC
82025405 GAAAAGCCGAAATGCCGAAAAGCC
1 -AAAAGCCGAAATGCCGAAAAGCC
82025429 AAAAG
1 AAAAG
82025434 TTTGGCTACG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.50, C:0.19, G:0.23, T:0.08
Consensus pattern (23 bp):
AAAAGCCGAAATGCCGAAAAGCC
Found at i:82025697 original size:29 final size:29
Alignment explanation
Indices: 82025642--82025731 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
82025632 GTGAGCATGA
* * *
82025642 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
82025670 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
82025699 ATGTACAGGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
82025728 ATAT
1 ATAT
82025732 GAATATGAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 11 0.21
29 42 0.79
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:82025728 original size:58 final size:57
Alignment explanation
Indices: 82025655--82025765 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 57
82025645 TGAATGTGAC
* * * *
82025655 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATG-TACAGGTGATT
1 TGGGCCTAACAGGCCATATAAATATGA-ATGGGCCTAACGGGCCA-GATACAGGTGATT
* * *
82025713 TGGGCCTAATAGGCCATATGAATATGAATGGGCTTAACGGGCCAGATACAGGT
1 TGGGCCTAACAGGCCATATAAATATGAATGGGCCTAACGGGCCAGATACAGGT
82025766 ATGCGAATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
56 1 0.02
57 21 0.47
58 23 0.51
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (57 bp):
TGGGCCTAACAGGCCATATAAATATGAATGGGCCTAACGGGCCAGATACAGGTGATT
Found at i:82028666 original size:16 final size:16
Alignment explanation
Indices: 82028645--82028677 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
82028635 TTGTAACGCC
*
82028645 CCAAAAATCCTGAAAT
1 CCAAAAATCCCGAAAT
82028661 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
82028677 C
1 C
82028678 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:82029900 original size:8 final size:8
Alignment explanation
Indices: 82029875--82029926 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
82029865 ATGAATCGGT
*
82029875 AAAAGCTG
1 AAAAGCCG
* *
82029883 AAATGTCG
1 AAAAGCCG
82029891 AAAAGCCG
1 AAAAGCCG
82029899 AAAAGCC-
1 AAAAGCCG
82029906 AAAATGCCG
1 AAAA-GCCG
82029915 AAAAGCC-
1 AAAAGCCG
82029922 AAAAG
1 AAAAG
82029927 TTTGGCTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
7 9 0.24
8 24 0.65
9 4 0.11
ACGTcount: A:0.52, C:0.19, G:0.21, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:82029914 original size:16 final size:15
Alignment explanation
Indices: 82029891--82029926 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
82029881 TGAAATGTCG
82029891 AAAAGCCGAAAAGCC
1 AAAAGCCGAAAAGCC
82029906 AAAATGCCGAAAAGCC
1 AAAA-GCCGAAAAGCC
82029922 AAAAG
1 AAAAG
82029927 TTTGGCTACG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.56, C:0.22, G:0.19, T:0.03
Consensus pattern (15 bp):
AAAAGCCGAAAAGCC
Found at i:82030174 original size:29 final size:28
Alignment explanation
Indices: 82030122--82030236 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
82030112 GTGAGCATGA
* *
82030122 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
82030150 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * * *
82030179 ATGTACAGGTGATTTGGGACTAATGGGCT
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
82030208 ATATGAATATGAATGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
82030236 A
1 A
82030237 GATATAGGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:82038892 original size:34 final size:34
Alignment explanation
Indices: 82038849--82038916 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
82038839 GATTTCGTGT
82038849 AAGACCATATTTGGGATATGACATCGATATGAGA
1 AAGACCATATTTGGGATATGACATCGATATGAGA
82038883 AAGACCATATTTGGGATATGACATCGATATGAGA
1 AAGACCATATTTGGGATATGACATCGATATGAGA
82038917 CTTCGTGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (34 bp):
AAGACCATATTTGGGATATGACATCGATATGAGA
Found at i:82043701 original size:16 final size:17
Alignment explanation
Indices: 82043671--82043707 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
82043661 CTCTCTTTTG
*
82043671 TTTTCTTTTTCTTATTT
1 TTTTCTTCTTCTTATTT
82043688 TTTTCTTCTT-TTATTT
1 TTTTCTTCTTCTTATTT
82043704 TTTT
1 TTTT
82043708 ACAATCTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTCTTCTTCTTATTT
Found at i:82046001 original size:30 final size:30
Alignment explanation
Indices: 82045916--82046012 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
82045906 TAAACTAAAA
* *
82045916 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * * *
82045946 TGAGATGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
82045976 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
82046005 ATGAGCTA
1 -TGAGCTA
82046013 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:82047525 original size:13 final size:13
Alignment explanation
Indices: 82047492--82047525 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
82047482 AAAATTCGAA
82047492 TTTTTTTTGAACT
1 TTTTTTTTGAACT
*
82047505 TCTTTTTTGAACT
1 TTTTTTTTGAACT
82047518 TTTTTTTT
1 TTTTTTTT
82047526 TATTTTTTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.74
Consensus pattern (13 bp):
TTTTTTTTGAACT
Found at i:82047560 original size:18 final size:19
Alignment explanation
Indices: 82047520--82047586 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
82047510 TTTGAACTTT
*
82047520 TTTTTTTATTTTTTCCAAT
1 TTTTTTTATTTTTTCCAAC
* *
82047539 TTTTTTTGTTTTTT-GAAC
1 TTTTTTTATTTTTTCCAAC
*
82047557 TTTTTTTCGATTTTTTTCAAAAC
1 TTTTTTT--A-TTTTTTC-CAAC
82047580 TTTTTTT
1 TTTTTTT
82047587 TCAATTACTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 9 0.24
19 13 0.34
21 6 0.16
23 10 0.26
ACGTcount: A:0.15, C:0.09, G:0.04, T:0.72
Consensus pattern (19 bp):
TTTTTTTATTTTTTCCAAC
Found at i:82047584 original size:40 final size:40
Alignment explanation
Indices: 82047507--82047585 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
82047497 TTTGAACTTC
** * **
82047507 TTTTTTGAACTTTTTTTTTTATTTTTTCCAATTTTTTTTG
1 TTTTTTGAACTTTTTTTGATATTTTTTCAAAACTTTTTTG
82047547 TTTTTTGAACTTTTTTTCGAT-TTTTTTCAAAACTTTTTT
1 TTTTTTGAACTTTTTTT-GATATTTTTTCAAAACTTTTTT
82047586 TTCAATTACT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.15, C:0.09, G:0.05, T:0.71
Consensus pattern (40 bp):
TTTTTTGAACTTTTTTTGATATTTTTTCAAAACTTTTTTG
Found at i:82047852 original size:24 final size:24
Alignment explanation
Indices: 82047820--82047868 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
82047810 ATGAAAAAGG
82047820 TAAGGTGGAAAAGAAGGAATTTGT
1 TAAGGTGGAAAAGAAGGAATTTGT
82047844 TAAGGTGGAAAAGAAGGAATTTGT
1 TAAGGTGGAAAAGAAGGAATTTGT
82047868 T
1 T
82047869 TTGGTTCGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.33, T:0.27
Consensus pattern (24 bp):
TAAGGTGGAAAAGAAGGAATTTGT
Found at i:82051001 original size:30 final size:30
Alignment explanation
Indices: 82050966--82051023 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
82050956 GCCATATCCC
82050966 AGACATGGTCTTACATGGGATCACATATCG
1 AGACATGGTCTTACATGGGATCACATATCG
*
82050996 AGACATGGTCTTACATGGGATCTCATAT
1 AGACATGGTCTTACATGGGATCACATAT
82051024 TGAAACTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (30 bp):
AGACATGGTCTTACATGGGATCACATATCG
Found at i:82054387 original size:94 final size:94
Alignment explanation
Indices: 82054209--82054614 Score: 565
Period size: 94 Copynumber: 4.4 Consensus size: 94
82054199 ATCTGTGCCG
* * * *
82054209 TGTCCCAGATAGGTCTTACACT-G-ACACATA--TC-ATGCCGAAGCCATGTCCCAGACATGGTC
1 TGTCCCAGACATGTCTTACACTAGCACACATATCTCGAGGCCGATG-CATGTCCCAGACAT-GTC
* * * *
82054269 TTACACTAGCTTTCACGATGTGGCTGATGCA
64 TTACACTGGCTTTCGCAATGTGGCCGATGCA
* * *
82054300 TGTCCCAGACATGTCTTACACTAGCACACATATCTCGAGGCTGATGCAAGTCCTAGACATGTCTT
1 TGTCCCAGACATGTCTTACACTAGCACACATATCTCGAGGCCGATGCATGTCCCAGACATGTCTT
* *
82054365 GCACTGGCTTTCGCAATGTGGCTGATGCA
66 ACACTGGCTTTCGCAATGTGGCCGATGCA
82054394 TGTCCCAGACATGTCTTACAC-AGCACACATATCTCGAGGCCGATGCATGTCCCAGACATGTCTT
1 TGTCCCAGACATGTCTTACACTAGCACACATATCTCGAGGCCGATGCATGTCCCAGACATGTCTT
*
82054458 ACACTGGCTCTCGCAATGTGGCCGATGCA
66 ACACTGGCTTTCGCAATGTGGCCGATGCA
* * *
82054487 TGCCCCAGACATGTCTTACACTAGCACACATATCTCGAGGCCGATACATGTCCCAAACATGTCTT
1 TGTCCCAGACATGTCTTACACTAGCACACATATCTCGAGGCCGATGCATGTCCCAGACATGTCTT
82054552 ACACTGGCTCTT-GCAATGTGGCCGATGCA
66 ACACTGGCT-TTCGCAATGTGGCCGATGCA
* *
82054581 TGTCCCAGACATGTCTTACATTGGCACACATATC
1 TGTCCCAGACATGTCTTACACTAGCACACATATC
82054615 ACCTGCACTG
Statistics
Matches: 284, Mismatches: 24, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
91 20 0.07
92 1 0.00
93 93 0.33
94 149 0.52
95 15 0.05
96 6 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (94 bp):
TGTCCCAGACATGTCTTACACTAGCACACATATCTCGAGGCCGATGCATGTCCCAGACATGTCTT
ACACTGGCTTTCGCAATGTGGCCGATGCA
Found at i:82054404 original size:46 final size:45
Alignment explanation
Indices: 82054251--82054600 Score: 312
Period size: 46 Copynumber: 7.5 Consensus size: 45
82054241 ATGCCGAAGC
* *
82054251 CATGTCCCAGACATGGTCTTACACTAGCTTTCACGATGTGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGC-TTCACAATGTGGCCGATG
* * *
82054298 CATGTCCCAGACATGTCTTACACTAGC-ACACATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCACA-A--T-GTGGCCGATG
* * * * * *
82054346 CAAGTCCTAGACATGTCTTGCACTGGCTTTCGCAATGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TTCACAATGTGGCCGATG
* *
82054392 CATGTCCCAGACATGTCTTACAC-AGC-ACACATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCACA-A--T-GTGGCCGATG
* *
82054439 CATGTCCCAGACATGTCTTACACTGGCTCTCGCAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TCACAATGTGGCCGATG
* * * *
82054485 CATGCCCCAGACATGTCTTACACTAGC-ACACATATCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTCACA-A--T-GTGGCCGATG
* * **
82054533 CATGTCCCAAACATGTCTTACACTGGCTCTTGCAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TCACAATGTGGCCGATG
82054579 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
82054601 TTGGCACACA
Statistics
Matches: 247, Mismatches: 37, Indels: 39
0.76 0.11 0.12
Matches are distributed among these distances:
43 3 0.01
44 7 0.03
45 4 0.02
46 106 0.43
47 50 0.20
48 66 0.27
49 3 0.01
50 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCACAATGTGGCCGATG
Found at i:82054487 original size:187 final size:188
Alignment explanation
Indices: 82054209--82054614 Score: 563
Period size: 187 Copynumber: 2.2 Consensus size: 188
82054199 ATCTGTGCCG
* * * *
82054209 TGTCCCAGATAGGTCTTACACTG-ACACATA--TCATGCCGAAGCCATGTCCCAGACATGGTCTT
1 TGTCCCAGACATGTCTTACACAGCACACATATCTCAGGCCGAAGCCATGTCCCAGACATGGTCTT
* * * *
82054271 ACACTAGCTTTCACGATGTGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACACATATCTC
66 ACACTAGCTCTCACAATGTGGCCGATGCATGCCCCAGACATGTCTTACACTAGCACACATATCTC
* * * * * *
82054336 GAGGCTGATGCAAGTCCTAGACATGTCTTGCACTGGCT-TTCGCAATGTGGCTGATGCA
131 GAGGCCGATACAAGTCCCAAACATGTCTTACACTGGCTCTT-GCAATGTGGCCGATGCA
*
82054394 TGTCCCAGACATGTCTTACACAGCACACATATCTCGAGGCCGATG-CATGTCCCAGACAT-GTCT
1 TGTCCCAGACATGTCTTACACAGCACACATATCTC-AGGCCGAAGCCATGTCCCAGACATGGTCT
* *
82054457 TACACTGGCTCTCGCAATGTGGCCGATGCATGCCCCAGACATGTCTTACACTAGCACACATATCT
65 TACACTAGCTCTCACAATGTGGCCGATGCATGCCCCAGACATGTCTTACACTAGCACACATATCT
*
82054522 CGAGGCCGATACATGTCCCAAACATGTCTTACACTGGCTCTTGCAATGTGGCCGATGCA
130 CGAGGCCGATACAAGTCCCAAACATGTCTTACACTGGCTCTTGCAATGTGGCCGATGCA
**
82054581 TGTCCCAGACATGTCTTACATTGGCACACATATC
1 TGTCCCAGACATGTCTTACA-CAGCACACATATC
82054615 ACCTGCACTG
Statistics
Matches: 195, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
185 20 0.10
186 7 0.04
187 132 0.68
188 29 0.15
189 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (188 bp):
TGTCCCAGACATGTCTTACACAGCACACATATCTCAGGCCGAAGCCATGTCCCAGACATGGTCTT
ACACTAGCTCTCACAATGTGGCCGATGCATGCCCCAGACATGTCTTACACTAGCACACATATCTC
GAGGCCGATACAAGTCCCAAACATGTCTTACACTGGCTCTTGCAATGTGGCCGATGCA
Found at i:82059542 original size:24 final size:23
Alignment explanation
Indices: 82059498--82059542 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
82059488 TTTCTTTTGT
82059498 TTCTTTTTCTAATTCTTTTTCTC
1 TTCTTTTTCTAATTCTTTTTCTC
82059521 TTCTTTCTTC-AATTTCTTTTTC
1 TTCTTT-TTCTAA-TTCTTTTTC
82059543 ACTCTCAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.09, C:0.22, G:0.00, T:0.69
Consensus pattern (23 bp):
TTCTTTTTCTAATTCTTTTTCTC
Found at i:82061844 original size:12 final size:13
Alignment explanation
Indices: 82061827--82061855 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
82061817 TTAAACTAAG
82061827 TAAATAAAT-AAA
1 TAAATAAATAAAA
82061839 TAAATAAATAAAA
1 TAAATAAATAAAA
82061852 TAAA
1 TAAA
82061856 AATAAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAATAAATAAAA
Found at i:82062202 original size:50 final size:51
Alignment explanation
Indices: 82062069--82062204 Score: 204
Period size: 50 Copynumber: 2.7 Consensus size: 51
82062059 TAGTAAGATA
* ** *
82062069 CCAATGCCATATCCCAGTTATGGTCTTACAT-GGATTCACACATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATACACACATATCGATG
* *
82062119 CCAATGTCATGTCCAAGACATGGTCTTACATGGGA-ACACACATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATACACACATATCGATG
82062169 CCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
82062205 CTCATATTGA
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
50 73 0.96
51 3 0.04
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (51 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATACACACATATCGATG
Found at i:82066289 original size:51 final size:51
Alignment explanation
Indices: 82066212--82066359 Score: 246
Period size: 51 Copynumber: 2.9 Consensus size: 51
82066202 CGGAGACACG
82066212 GTGGCCTTCACATAGTACCATC-CTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCA-CACTTGT-GTCCAAAGCTATTTTATTCACAAA
* *
82066263 GTGGCTTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
82066314 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
82066360 CTAAGGTTCA
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
50 2 0.02
51 89 0.98
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:82066439 original size:52 final size:52
Alignment explanation
Indices: 82066383--82066501 Score: 211
Period size: 52 Copynumber: 2.3 Consensus size: 52
82066373 GGGAAATTTC
82066383 TCACTTAGCACAATGCCATGGACTTATTTCACGTAGATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACGTAGATGCCATGGACTTATT
* * *
82066435 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACGTAGATGCCATGGACTTATT
82066487 TCACTTAGCACAATG
1 TCACTTAGCACAATG
82066502 TCATATCCTA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACGTAGATGCCATGGACTTATT
Found at i:82066460 original size:28 final size:27
Alignment explanation
Indices: 82066383--82066498 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
82066373 GGGAAATTTC
82066383 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
*
82066411 TCACGTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
82066435 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
82066463 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
82066487 TCACTTAGCACA
1 TCACTTAGCACA
82066499 ATGTCATATC
Statistics
Matches: 78, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
24 45 0.58
25 1 0.01
27 2 0.03
28 30 0.38
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:82066653 original size:31 final size:31
Alignment explanation
Indices: 82066615--82066677 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
82066605 ATGATTGTGA
82066615 TCGATCCTACCTTTTTACTCAATTTGAAAGT
1 TCGATCCTACCTTTTTACTCAATTTGAAAGT
* *
82066646 TCGATCCTGCGTTTTTACTCAATTTGAAAGT
1 TCGATCCTACCTTTTTACTCAATTTGAAAGT
82066677 T
1 T
82066678 TACTTTAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.43
Consensus pattern (31 bp):
TCGATCCTACCTTTTTACTCAATTTGAAAGT
Found at i:82067995 original size:21 final size:21
Alignment explanation
Indices: 82067969--82068031 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
82067959 TTGGTATTTG
82067969 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
82067990 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
82068011 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
82068032 ACGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Done.