Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 250 of 356
Found at i:82072775 original size:22 final size:22
Alignment explanation
Indices: 82072747--82072791 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
82072737 TAGGTACGTA
82072747 AAAAAAAGAGTTCGAAAAAAAAAG
1 AAAAAAA-A-TTCGAAAAAAAAAG
*
82072771 AAAAAAAATTTGAAAAAAAAA
1 AAAAAAAATTCGAAAAAAAAA
82072792 TTGCATACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 12 0.60
23 1 0.05
24 7 0.35
ACGTcount: A:0.76, C:0.02, G:0.11, T:0.11
Consensus pattern (22 bp):
AAAAAAAATTCGAAAAAAAAAG
Found at i:82075041 original size:17 final size:17
Alignment explanation
Indices: 82074996--82075043 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
82074986 AGAAAAGAGC
* *
82074996 GAAAATACAAAAGAAAA
1 GAAAATTCAAAAAAAAA
* *
82075013 GAAAAATGAAAAAAAAA
1 GAAAATTCAAAAAAAAA
82075030 GAAAATTCAAAAAA
1 GAAAATTCAAAAAA
82075044 GAGAATGAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.77, C:0.04, G:0.10, T:0.08
Consensus pattern (17 bp):
GAAAATTCAAAAAAAAA
Found at i:82076961 original size:20 final size:20
Alignment explanation
Indices: 82076938--82076991 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
82076928 AGTTTTTCCC
*
82076938 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
82076958 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
82076978 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
82076992 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:82076973 original size:30 final size:30
Alignment explanation
Indices: 82076938--82077011 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
82076928 AGTTTTTCCC
82076938 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
82076968 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
82076998 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
82077012 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:82077001 original size:20 final size:20
Alignment explanation
Indices: 82076938--82077002 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
82076928 AGTTTTTCCC
* * * *
82076938 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
82076958 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
82076977 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
82076998 AGCTC
1 AGCTC
82077003 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:82085144 original size:28 final size:28
Alignment explanation
Indices: 82085104--82085160 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
82085094 ATAAATATGC
82085104 ATGTTAATTTGCTTGAAGTGAATCATAT
1 ATGTTAATTTGCTTGAAGTGAATCATAT
82085132 ATGTTAATTTGCTTGAAGTGAATCATAT
1 ATGTTAATTTGCTTGAAGTGAATCATAT
82085160 A
1 A
82085161 ACTGAAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (28 bp):
ATGTTAATTTGCTTGAAGTGAATCATAT
Found at i:82091160 original size:30 final size:31
Alignment explanation
Indices: 82091126--82091222 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
82091116 AGCTCACTCC
*
82091126 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
82091156 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
82091186 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
82091216 TAGCTCA
1 TAGCTCA
82091223 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:82098833 original size:13 final size:13
Alignment explanation
Indices: 82098815--82098839 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82098805 TGGTCATCAT
82098815 GGTGTGAACACAA
1 GGTGTGAACACAA
82098828 GGTGTGAACACA
1 GGTGTGAACACA
82098840 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:82101524 original size:28 final size:28
Alignment explanation
Indices: 82101484--82101540 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
82101474 ACCATGTCGA
*
82101484 TGCCACATTAGTTTAACTAACGAAATTT
1 TGCCACATCAGTTTAACTAACGAAATTT
82101512 TGCCACATCAGTTTAACTAACGAAATTT
1 TGCCACATCAGTTTAACTAACGAAATTT
82101540 T
1 T
82101541 CTTATTTCGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (28 bp):
TGCCACATCAGTTTAACTAACGAAATTT
Found at i:82109572 original size:30 final size:30
Alignment explanation
Indices: 82109501--82109583 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
82109491 CTTTTGTTTC
* *
82109501 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
82109532 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
82109561 ATTTTCTTTTTCTTTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
82109584 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.12, C:0.22, G:0.01, T:0.65
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:82109601 original size:12 final size:12
Alignment explanation
Indices: 82109586--82109616 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
82109576 TTCTTTTTGC
82109586 TTTTCAAAGGAT
1 TTTTCAAAGGAT
*
82109598 TTTTCAAAGGCT
1 TTTTCAAAGGAT
82109610 TTTTCAA
1 TTTTCAA
82109617 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGAT
Found at i:82109684 original size:15 final size:15
Alignment explanation
Indices: 82109664--82109726 Score: 65
Period size: 16 Copynumber: 4.1 Consensus size: 15
82109654 CTCTTGCCTC
82109664 TCTTTTCTTTTTATT
1 TCTTTTCTTTTTATT
*
82109679 TCTTTTTCTTTTT-CT
1 TC-TTTTCTTTTTATT
*
82109694 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTT-ATT
*
82109711 TCTTTTTTTTTTATT
1 TCTTTTCTTTTTATT
82109726 T
1 T
82109727 TCTCTATACA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
14 4 0.10
15 14 0.35
16 15 0.38
17 7 0.17
ACGTcount: A:0.03, C:0.14, G:0.02, T:0.81
Consensus pattern (15 bp):
TCTTTTCTTTTTATT
Found at i:82109706 original size:7 final size:6
Alignment explanation
Indices: 82109677--82109727 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
82109667 TTTCTTTTTA
*
82109677 TTTCTT TTTCTT TTTCTTCT TTTGCTT TTTC-T TTTCTT TTT-TT TTTATT
1 TTTCTT TTTCTT TTTC-T-T TTT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
82109726 TT
1 TT
82109728 CTCTATACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
5 10 0.25
6 19 0.47
7 5 0.12
8 5 0.12
9 1 0.03
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:82109720 original size:21 final size:20
Alignment explanation
Indices: 82109664--82109720 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
82109654 CTCTTGCCTC
82109664 TCTTTTCTTTTTATTTCTTTT
1 TCTTTTCTTTTT-TTTCTTTT
* *
82109685 TCTTTTTCTTCTTTTGCTTTT
1 TC-TTTTCTTTTTTTTCTTTT
82109706 TCTTTTCTTTTTTTT
1 TCTTTTCTTTTTTTT
82109721 TTATTTTCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 11 0.35
21 11 0.35
22 9 0.29
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.81
Consensus pattern (20 bp):
TCTTTTCTTTTTTTTCTTTT
Found at i:82110647 original size:11 final size:11
Alignment explanation
Indices: 82110631--82110668 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
82110621 TAAAACACCC
82110631 TTTTTTCAGTT
1 TTTTTTCAGTT
82110642 TTTTTTC-GATT
1 TTTTTTCAG-TT
*
82110653 TTTTTTCAATT
1 TTTTTTCAGTT
82110664 TTTTT
1 TTTTT
82110669 AACTTGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 1 0.04
11 23 0.96
ACGTcount: A:0.11, C:0.08, G:0.05, T:0.76
Consensus pattern (11 bp):
TTTTTTCAGTT
Found at i:82112359 original size:30 final size:30
Alignment explanation
Indices: 82112325--82112421 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
82112315 TAAACTAAAA
*
82112325 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCATGAGCTAAAGT
* * * * * *
82112355 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCATGAGCTAAAGT
* *
82112385 TGAGCTAAGGTTTAGCTCATGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCATGAGCT-AAAGT
82112415 TGAGCTA
1 TGAGCTA
82112422 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCATGAGCTAAAGT
Found at i:82114485 original size:30 final size:30
Alignment explanation
Indices: 82114410--82114486 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 30
82114400 TCAACTCACA
* *
82114410 AGCTAAACCTTAGCTCAACTTCAGCTTAGG
1 AGCTAAAGCTTAGCTCAACTTCAGCTCAGG
** * * *
82114440 AG-TTTAGCCTCAGCTCAACTTTAGCTCATG
1 AGCTAAAG-CTTAGCTCAACTTCAGCTCAGG
82114470 AGCTAAAGCTTAGCTCA
1 AGCTAAAGCTTAGCTCA
82114487 TTTTAGTTTA
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
29 2 0.06
30 30 0.86
31 3 0.09
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (30 bp):
AGCTAAAGCTTAGCTCAACTTCAGCTCAGG
Found at i:82116569 original size:30 final size:30
Alignment explanation
Indices: 82116535--82116631 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
82116525 CTTTAGCTCG
*
82116535 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTAAGCTAAAGT
* * * * *
82116565 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTAAGCTAAAGT
* *
82116595 TGAGCTAAGGTTTAGCTCGTAAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTAAGCT-AAAGT
82116625 TGAGCTA
1 TGAGCTA
82116632 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
29 2 0.04
30 43 0.84
31 6 0.12
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTAAGCTAAAGT
Found at i:82116570 original size:19 final size:19
Alignment explanation
Indices: 82116516--82116561 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
82116506 TAAACTAAAA
82116516 TGAGCTAAGCTTTAGCTCG
1 TGAGCTAAGCTTTAGCTCG
82116535 TGAGCTAAGCTTTAGCTCG
1 TGAGCTAAGCTTTAGCTCG
82116554 TGAGCTAA
1 TGAGCTAA
82116562 AGTTGAGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (19 bp):
TGAGCTAAGCTTTAGCTCG
Found at i:82118818 original size:30 final size:31
Alignment explanation
Indices: 82118747--82118829 Score: 91
Period size: 30 Copynumber: 2.7 Consensus size: 31
82118737 CTTTTGTTTC
*
82118747 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCATCTTCTTTTTCAATCTCA
*
82118778 AATTTC-TTTTCGT-TCTCTTTTTCAATCTC-
1 AATTTCTTTTTCATCT-TCTTTTTCAATCTCA
* * *
82118807 ATTTTCTTTTTCATTTTATTTTT
1 AATTTCTTTTTCATCTTCTTTTT
82118830 GCTTTTCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
29 6 0.14
30 31 0.70
31 7 0.16
ACGTcount: A:0.14, C:0.20, G:0.01, T:0.64
Consensus pattern (31 bp):
AATTTCTTTTTCATCTTCTTTTTCAATCTCA
Found at i:82118847 original size:12 final size:12
Alignment explanation
Indices: 82118832--82118862 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
82118822 TTATTTTTGC
82118832 TTTTCAAAAGCT
1 TTTTCAAAAGCT
*
82118844 TTTTCAAAGGCT
1 TTTTCAAAAGCT
82118856 TTTTCAA
1 TTTTCAA
82118863 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (12 bp):
TTTTCAAAAGCT
Found at i:82118927 original size:5 final size:5
Alignment explanation
Indices: 82118917--82118973 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
82118907 CTCTTGCCTC
*
82118917 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
82118964 TCTTT TCTTT
1 TCTTT TCTTT
82118974 GTTTTCTCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:82118957 original size:15 final size:14
Alignment explanation
Indices: 82118917--82118973 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
82118907 CTCTTGCCTC
*
82118917 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
82118932 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
82118947 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
82118964 TCTTTTCTTT
1 TCTTTTCTTT
82118974 GTTTTCTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:82118974 original size:21 final size:21
Alignment explanation
Indices: 82118917--82118978 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
82118907 CTCTTGCCTC
* *
82118917 TCTTTTCTTTT-TATTTCGTTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
82118938 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
82118959 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
82118979 CTCATTACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 7 0.21
21 22 0.65
22 5 0.15
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:82126594 original size:13 final size:13
Alignment explanation
Indices: 82126576--82126621 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 13
82126566 CGTATGCAAT
82126576 TTTTTTTTCAAAA
1 TTTTTTTTCAAAA
**
82126589 TTTTTTTTTCAATT
1 -TTTTTTTTCAAAA
82126603 TTTTTTTTC--AA
1 TTTTTTTTCAAAA
82126614 TTTTTTTT
1 TTTTTTTT
82126622 TGATTTCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
11 8 0.29
13 9 0.32
14 11 0.39
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTTTCAAAA
Found at i:82126622 original size:13 final size:13
Alignment explanation
Indices: 82126575--82126622 Score: 78
Period size: 13 Copynumber: 3.6 Consensus size: 13
82126565 CCGTATGCAA
*
82126575 TTTTTTTTTCAAAA
1 TTTTTTTTTC-AAT
82126589 TTTTTTTTTCAAT
1 TTTTTTTTTCAAT
82126602 TTTTTTTTTCAAT
1 TTTTTTTTTCAAT
82126615 TTTTTTTT
1 TTTTTTTT
82126623 GATTTCTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
13 23 0.70
14 10 0.30
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:82129412 original size:30 final size:30
Alignment explanation
Indices: 82129378--82129474 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
82129368 TAAACTAAAA
82129378 TGAGCTAAGCTTTAGCTCGTAAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTAAGCTAAAGT
* * * * *
82129408 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTAAGCTAAAGT
* *
82129438 TGAGCTAAGGTTTAGCTCGTAAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTAAGCT-AAAGT
82129468 TGAGCTA
1 TGAGCTA
82129475 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 2 0.04
30 44 0.85
31 6 0.12
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTAAGCTAAAGT
Found at i:82140820 original size:19 final size:20
Alignment explanation
Indices: 82140783--82140833 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
82140773 AATGAGCTGA
82140783 AACGAGCTAAAATCAAGCTC
1 AACGAGCTAAAATCAAGCTC
*
82140803 AACGAGCTGAAA-CAAGCTC
1 AACGAGCTAAAATCAAGCTC
*
82140822 AAGTGAGCTAAA
1 AA-CGAGCTAAA
82140834 TGGAGCTTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.45, C:0.22, G:0.20, T:0.14
Consensus pattern (20 bp):
AACGAGCTAAAATCAAGCTC
Found at i:82142357 original size:19 final size:19
Alignment explanation
Indices: 82142333--82142372 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
82142323 AGCTTCCATG
82142333 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
* *
82142352 TAGCTCGAGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
82142371 TA
1 TA
82142373 TCAGCTCACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:82145143 original size:30 final size:31
Alignment explanation
Indices: 82145078--82145145 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 31
82145068 TTAAACTAAA
82145078 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* *
82145109 -TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
82145138 ATGAGCTA
1 ATGAGCTA
82145146 GGAGTGAGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 1 0.03
30 33 0.97
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (31 bp):
ATGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:82145156 original size:30 final size:30
Alignment explanation
Indices: 82145092--82145156 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
82145082 GCTAAGCTTT
* *
82145092 AGCTCGTGAGCTAAAGTTGAGCTAAGGTTT
1 AGCTCGTGAGCTAAAGTTGAGCTAAGGGTG
*
82145122 AGCTCGTGAGCTGAA-TATGAGCT-AGGAGTG
1 AGCTCGTGAGCTAAAGT-TGAGCTAAGG-GTG
82145152 AGCTC
1 AGCTC
82145157 AGTTTAGCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 4 0.13
30 26 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (30 bp):
AGCTCGTGAGCTAAAGTTGAGCTAAGGGTG
Found at i:82147406 original size:30 final size:29
Alignment explanation
Indices: 82147370--82147454 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 29
82147360 TTCTTTTGTT
*
82147370 TCAAATTCTTTTTCATCTTCTTTTTCACTC
1 TCAAATTCTTTTTCAT-TTCTTTTTCAATC
82147400 TCAAATT-TCTTTTCATTCTCTTTTTCAATC
1 TCAAATTCT-TTTTCATT-TCTTTTTCAATC
**
82147430 TCATTTTCTTTTTCATTTTCTTTTT
1 TCAAATTCTTTTTCA-TTTCTTTTT
82147455 ACTTTTCAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
29 2 0.04
30 43 0.90
31 3 0.06
ACGTcount: A:0.15, C:0.22, G:0.00, T:0.62
Consensus pattern (29 bp):
TCAAATTCTTTTTCATTTCTTTTTCAATC
Found at i:82147454 original size:18 final size:18
Alignment explanation
Indices: 82147405--82147460 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
82147395 CACTCTCAAA
*
82147405 TTTC-TTTTCATTCTCTT
1 TTTCATTTTCATTTTCTT
* *
82147422 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
82147440 TTTCATTTTCTTTTTACTT
1 TTTCATTTTCATTTT-CTT
82147459 TT
1 TT
82147461 CAAAGGCTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
17 4 0.13
18 22 0.71
19 5 0.16
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:82147461 original size:12 final size:12
Alignment explanation
Indices: 82147430--82147454 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82147420 TTTTTCAATC
82147430 TCATTTTCTTTT
1 TCATTTTCTTTT
82147442 TCATTTTCTTTT
1 TCATTTTCTTTT
82147454 T
1 T
82147455 ACTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:82147472 original size:12 final size:12
Alignment explanation
Indices: 82147457--82147487 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
82147447 TTCTTTTTAC
82147457 TTTTCAAAGGCT
1 TTTTCAAAGGCT
82147469 TTTTCAAAGGCT
1 TTTTCAAAGGCT
82147481 TTTTCAA
1 TTTTCAA
82147488 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:82147545 original size:5 final size:5
Alignment explanation
Indices: 82147535--82147591 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
82147525 CTCTTGCCTC
*
82147535 TCTTT TCTTT T-TATT TCTTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
82147582 TCTTT TCTTT
1 TCTTT TCTTT
82147592 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:82147555 original size:15 final size:14
Alignment explanation
Indices: 82147535--82147598 Score: 65
Period size: 16 Copynumber: 4.2 Consensus size: 14
82147525 CTCTTGCCTC
82147535 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-TT
*
82147550 TCTTTTTCTTTTTCT
1 TC-TTTTCTTTTTTT
82147565 TCTTTTGCTTTTTCTTT
1 TCTTTT-C-TTTT-TTT
*
82147582 TCTTTTCTTTGTTT
1 TCTTTTCTTTTTTT
82147596 TCT
1 TCT
82147599 CTTTACAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
14 10 0.24
15 9 0.21
16 15 0.36
17 8 0.19
ACGTcount: A:0.02, C:0.17, G:0.03, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:82147567 original size:25 final size:25
Alignment explanation
Indices: 82147539--82147587 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
82147529 TGCCTCTCTT
82147539 TTCTTTT-TATTTCTTTTTCTTTTTC
1 TTCTTTTCTATTTC-TTTTCTTTTTC
*
82147564 TTCTTTTGCTTTTTCTTTTCTTTT
1 TTCTTTT-CTATTTCTTTTCTTTT
82147588 CTTTGTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 9 0.43
27 5 0.24
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (25 bp):
TTCTTTTCTATTTCTTTTCTTTTTC
Found at i:82147592 original size:21 final size:21
Alignment explanation
Indices: 82147535--82147602 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
82147525 CTCTTGCCTC
*
82147535 TCTTTTCTTTT-TATTTCTTTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
82147556 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
82147577 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
82147597 CTCTTT
1 -TCTTT
82147603 ACAAGAATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 7 0.17
21 28 0.70
22 5 0.12
ACGTcount: A:0.01, C:0.18, G:0.03, T:0.78
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:82148499 original size:23 final size:21
Alignment explanation
Indices: 82148473--82148522 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
82148463 TTTTTTCAGA
* *
82148473 TTTTTTTCGAATTTTTTTGAATT
1 TTTTTTTCG-ACTTTTAT-AATT
82148496 TTTTTTTCGACTTTTATAATT
1 TTTTTTTCGACTTTTATAATT
82148517 TTTTTT
1 TTTTTT
82148523 GTACTATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.40
22 6 0.24
23 9 0.36
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.72
Consensus pattern (21 bp):
TTTTTTTCGACTTTTATAATT
Found at i:82148500 original size:10 final size:10
Alignment explanation
Indices: 82148462--82148500 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
82148452 TTAAACACTT
*
82148462 TTTTTTTCAGA
1 TTTTTTTGA-A
82148473 TTTTTTTCGAA
1 TTTTTTT-GAA
82148484 TTTTTTTGAA
1 TTTTTTTGAA
82148494 TTTTTTT
1 TTTTTTT
82148501 TTCGACTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 10 0.38
11 15 0.58
12 1 0.04
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:82150259 original size:30 final size:30
Alignment explanation
Indices: 82150172--82150268 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
82150162 AACTAAAATA
* *
82150172 AGCTAAGCTTTAGCTCGTGAGCTAAAGTTG
1 AGCTAAGATTTAGCTCGTGAGCTGAAGTTG
* * * *
82150202 AGCTGAGAGATTAAACTCCTCAGCTGAAGTTG
1 AGCT-A-AGATTTAGCTCGTGAGCTGAAGTTG
*
82150234 AGCTAAGGTTTAGCTCGTGAGCTGAA-TATG
1 AGCTAAGATTTAGCTCGTGAGCTGAAGT-TG
82150264 AGCTA
1 AGCTA
82150269 GGAGTGAGCT
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
29 1 0.02
30 27 0.51
31 2 0.04
32 23 0.43
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
AGCTAAGATTTAGCTCGTGAGCTGAAGTTG
Found at i:82156398 original size:19 final size:19
Alignment explanation
Indices: 82156374--82156413 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
82156364 AGCTCCCATG
82156374 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
* *
82156393 TAGCTCGAGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
82156412 TA
1 TA
82156414 AAAGCTCACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:82157952 original size:29 final size:29
Alignment explanation
Indices: 82157919--82157978 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
82157909 ATAACCAAAC
*
82157919 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
82157948 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
82157977 CT
1 CT
82157979 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:82157971 original size:15 final size:15
Alignment explanation
Indices: 82157925--82157972 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
82157915 AAACCTACAA
*
82157925 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
82157940 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
82157954 AAACTTCATATCCAT
1 AAACTTCATATCCAT
82157969 AAAC
1 AAAC
82157973 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:82162705 original size:56 final size:56
Alignment explanation
Indices: 82162600--82162706 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
82162590 ATTAATGCCG
* * * * *
82162600 TCCATGCATGGTGAATATCTCATTTAATTCATGTTTTGCTTCCCTTTAAATGTCGT
1 TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGTCGT
82162656 TCCATACATGG-GAACATCTCATTTAATTCATGTCTTTGCTGCACATTAAAT
1 TCCATACATGGTGAACATCTCATTTAATTCATGT-TTTGCTGCACATTAAAT
82162707 CAGCAAGCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 21 0.47
56 24 0.53
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (56 bp):
TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGTCGT
Found at i:82162898 original size:20 final size:20
Alignment explanation
Indices: 82162873--82162910 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
82162863 CAAGCCATTA
82162873 AACTTGAGCACGAATGAGCT
1 AACTTGAGCACGAATGAGCT
*
82162893 AACTTGAGCTCGAATGAG
1 AACTTGAGCACGAATGAG
82162911 TTGAACCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.21
Consensus pattern (20 bp):
AACTTGAGCACGAATGAGCT
Found at i:82164234 original size:15 final size:16
Alignment explanation
Indices: 82164195--82164235 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
82164185 AACAACACTC
82164195 CTTTCTTTTTCACTTT
1 CTTTCTTTTTCACTTT
* *
82164211 C-ATCCTTTTCA-TTT
1 CTTTCTTTTTCACTTT
82164225 CTTTCTTTTTC
1 CTTTCTTTTTC
82164236 CAACTCATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 3
0.74 0.15 0.11
Matches are distributed among these distances:
14 4 0.20
15 15 0.75
16 1 0.05
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.66
Consensus pattern (16 bp):
CTTTCTTTTTCACTTT
Found at i:82164430 original size:17 final size:15
Alignment explanation
Indices: 82164393--82164431 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
82164383 TATCTCCCAC
82164393 TCATCTTCTTTTTCTT
1 TCAT-TTCTTTTTCTT
82164409 TCATTTCTTTTTCATGT
1 TCATTTCTTTTTC-T-T
82164426 TCATTT
1 TCATTT
82164432 TCTCGCTCGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.10, C:0.21, G:0.03, T:0.67
Consensus pattern (15 bp):
TCATTTCTTTTTCTT
Found at i:82165452 original size:13 final size:12
Alignment explanation
Indices: 82165432--82165477 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
82165422 CATTGAATAC
82165432 AATTTTTTTTTG
1 AATTTTTTTTTG
*
82165444 AATTTTTTTTTCA
1 AATTTTTTTTT-G
82165457 AATTTTTTTTTG
1 AATTTTTTTTTG
82165469 AATTTTTTT
1 AATTTTTTT
82165478 ACAATACCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
12 20 0.65
13 11 0.35
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.74
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:82166638 original size:56 final size:56
Alignment explanation
Indices: 82166533--82166639 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
82166523 ATTAATGCCG
* * * * *
82166533 TCCATGCATGGTGAATATCTCATTTAATTCATGTTTTGCTTCCCTTTAAATGCTGT
1 TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGCTGT
82166589 TCCATACATGG-GAACATCTCATTTAATTCATGTCTTTGCTGCACATTAAAT
1 TCCATACATGGTGAACATCTCATTTAATTCATGT-TTTGCTGCACATTAAAT
82166640 CAGCAAGCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 21 0.47
56 24 0.53
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (56 bp):
TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGCTGT
Found at i:82166831 original size:20 final size:20
Alignment explanation
Indices: 82166806--82166843 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
82166796 CAAGCCATTA
82166806 AACTTGAGCACGAATGAGCT
1 AACTTGAGCACGAATGAGCT
*
82166826 AACTTGAGCTCGAATGAG
1 AACTTGAGCACGAATGAG
82166844 TTGAACCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.21
Consensus pattern (20 bp):
AACTTGAGCACGAATGAGCT
Found at i:82167047 original size:14 final size:14
Alignment explanation
Indices: 82167028--82167072 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
82167018 AACTCATCTT
*
82167028 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
82167042 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
82167055 AATTTAATTTAATG
1 AGTTTAATTTAATG
82167069 AGTT
1 AGTT
82167073 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:82168104 original size:15 final size:15
Alignment explanation
Indices: 82168058--82168105 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
82168048 AAACCTATAA
*
82168058 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
82168073 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
82168087 AAACTTCATATCCAT
1 AAACTTCATATCCAT
82168102 AAAC
1 AAAC
82168106 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:82169554 original size:26 final size:27
Alignment explanation
Indices: 82169524--82169610 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
82169514 GGTTCGTATC
82169524 AATACCCCTGTAGGGT-GAATTATCGA
1 AATACCCCTGTAGGGTAGAATTATCGA
* * **
82169550 AATACCCTTGTAGGGTAGAAATATTAA
1 AATACCCCTGTAGGGTAGAATTATCGA
*
82169577 AATACCCCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTATCGA
*
82169604 GATACCC
1 AATACCC
82169611 TTGTGGAGTA
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 15 0.30
27 35 0.70
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAGAATTATCGA
Found at i:82169608 original size:27 final size:27
Alignment explanation
Indices: 82169524--82169628 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
82169514 GGTTCGTATC
*
82169524 AATACCCCTGTAGGGT-GAATTATCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* * ***
82169550 AATACCCTTGTAGGGTAGAAATATTAA
1 AATACCCCTGTAGGGTAGAATTACCGA
82169577 AATACCCCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* * *
82169604 GATACCCTTGT-GGAGTAAAATTACC
1 AATACCCCTGTAGG-GTAGAATTACC
82169629 ATTTTACCCC
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 17 0.26
27 48 0.74
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAGAATTACCGA
Found at i:82169867 original size:28 final size:28
Alignment explanation
Indices: 82169825--82169886 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
82169815 GAGGAAGTGT
82169825 TCTGGTGGCTATGCCACAAATATCTATA
1 TCTGGTGGCTATGCCACAAATATCTATA
* *
82169853 TTTGGTGGCTATGCCACAAATATCTGTA
1 TCTGGTGGCTATGCCACAAATATCTATA
82169881 TCTGGT
1 TCTGGT
82169887 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTATGCCACAAATATCTATA
Found at i:82170100 original size:6 final size:6
Alignment explanation
Indices: 82170071--82170145 Score: 64
Period size: 6 Copynumber: 12.3 Consensus size: 6
82170061 TATAGGCTTC
* * *
82170071 ATTCTG ATTCTA ATTCTA ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
82170120 ATTCTA ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
82170146 AATGTTTCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
5 2 0.04
6 49 0.88
7 4 0.07
8 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:82171571 original size:23 final size:23
Alignment explanation
Indices: 82171545--82171589 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
82171535 GTTGAGCAAG
82171545 AAAAAGAAAAAGAAAAAGAAAGA
1 AAAAAGAAAAAGAAAAAGAAAGA
* ***
82171568 AAAATGAGTGAGAAAAAGAAAG
1 AAAAAGAAAAAGAAAAAGAAAG
82171590 GTCTTTTGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.04
Consensus pattern (23 bp):
AAAAAGAAAAAGAAAAAGAAAGA
Found at i:82173788 original size:30 final size:30
Alignment explanation
Indices: 82173753--82173816 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
82173743 AGCTCGAATT
*
82173753 AGCTCACA-TGAGCTTAATTTAGCTTGTTTG
1 AGCTCA-ATTGAGCTTAATTTAGCTCGTTTG
* *
82173783 AGCTCAATTTAGCTTACTTTAGCTCGTTTG
1 AGCTCAATTGAGCTTAATTTAGCTCGTTTG
82173813 AGCT
1 AGCT
82173817 TGGCTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (30 bp):
AGCTCAATTGAGCTTAATTTAGCTCGTTTG
Found at i:82173806 original size:20 final size:20
Alignment explanation
Indices: 82173761--82173807 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
82173751 TTAGCTCACA
* *
82173761 TGAGCTTAATTTAGCTTGTT
1 TGAGCTCAATTTAGCTTCTT
82173781 TGAGCTCAATTTAGCTTACTT
1 TGAGCTCAATTTAGCTT-CTT
82173802 T-AGCTC
1 TGAGCTC
82173808 GTTTGAGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.45
Consensus pattern (20 bp):
TGAGCTCAATTTAGCTTCTT
Found at i:82176520 original size:12 final size:12
Alignment explanation
Indices: 82176499--82176664 Score: 54
Period size: 12 Copynumber: 13.7 Consensus size: 12
82176489 AGAAAAGAAG
*
82176499 AAAGAGATTGAA
1 AAAGAAATTGAA
82176511 AAAGAAATTG--
1 AAAGAAATTGAA
**
82176521 AAAGAAA-ACAA
1 AAAGAAATTGAA
**
82176532 AAAGAAAACGAA
1 AAAGAAATTGAA
**
82176544 AAAGAAAAAGAA
1 AAAGAAATTGAA
** *
82176556 ATTGCAAA-AGAA
1 AAAG-AAATTGAA
*
82176568 AAAGAAATCGAA
1 AAAGAAATTGAA
** **
82176580 AAAGTGAGAGAA
1 AAAGAAATTGAA
*
82176592 AAAGAAAATGAAGA
1 AAAGAAATTG-A-A
82176606 AAAGAAAATTGAA
1 AAAG-AAATTGAA
**
82176619 AAAGAAAAAGCGAAA
1 AAAG--AAATTG-AA
82176634 AAAGAAATTGAA
1 AAAGAAATTGAA
* *
82176646 AGAGAACTTG-A
1 AAAGAAATTGAA
82176657 AAAGAAAT
1 AAAGAAAT
82176665 CAAGTGAAAA
Statistics
Matches: 116, Mismatches: 28, Indels: 21
0.70 0.17 0.13
Matches are distributed among these distances:
10 7 0.06
11 17 0.15
12 57 0.49
13 13 0.11
14 11 0.09
15 11 0.09
ACGTcount: A:0.67, C:0.04, G:0.19, T:0.10
Consensus pattern (12 bp):
AAAGAAATTGAA
Found at i:82176551 original size:18 final size:18
Alignment explanation
Indices: 82176525--82176628 Score: 82
Period size: 18 Copynumber: 5.6 Consensus size: 18
82176515 AAATTGAAAG
*
82176525 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAAACGA
** *
82176543 AAAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAAACGA
*
82176561 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAAACGA
** * *
82176579 AAAAGTGAGAGAAAAAGA
1 AAAAGAAAAAGAAAACGA
* *
82176597 AAATGAAGAAAAGAAAATTGA
1 AAAAG-A-AAAAGAAAA-CGA
82176618 AAAAGAAAAAG
1 AAAAGAAAAAG
82176629 CGAAAAAAGA
Statistics
Matches: 66, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
18 47 0.71
19 5 0.08
20 8 0.12
21 6 0.09
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAACGA
Found at i:82176553 original size:6 final size:6
Alignment explanation
Indices: 82176521--82176628 Score: 74
Period size: 6 Copynumber: 17.7 Consensus size: 6
82176511 AAAGAAATTG
* * ** *
82176521 AAAG-A AAACAA AAAGAA AACGAA AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
82176568 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
82176619 AAAGAA AAAG
1 AAAGAA AAAG
82176629 CGAAAAAAGA
Statistics
Matches: 75, Mismatches: 24, Indels: 7
0.71 0.23 0.07
Matches are distributed among these distances:
5 3 0.04
6 61 0.81
7 7 0.09
8 4 0.05
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:82176610 original size:14 final size:13
Alignment explanation
Indices: 82176589--82176626 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
82176579 AAAAGTGAGA
82176589 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
82176601 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
82176616 GAAAAAGAAAA
1 GAAAAAGAAAA
82176627 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:82176619 original size:27 final size:26
Alignment explanation
Indices: 82176589--82176651 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
82176579 AAAAGTGAGA
*
82176589 GAAAAAGAAAA-TGAAGAAAAGAAAATT
1 GAAAAAGAAAAGCGAA-AAAAG-AAATT
82176616 GAAAAAGAAAAAGCGAAAAAAGAAATT
1 GAAAAAG-AAAAGCGAAAAAAGAAATT
*
82176643 GAAAGAGAA
1 GAAAAAGAA
82176652 CTTGAAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 2 0.06
27 18 0.56
28 9 0.28
29 3 0.09
ACGTcount: A:0.70, C:0.02, G:0.21, T:0.08
Consensus pattern (26 bp):
GAAAAAGAAAAGCGAAAAAAGAAATT
Found at i:82176640 original size:21 final size:21
Alignment explanation
Indices: 82176590--82176640 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
82176580 AAAGTGAGAG
*
82176590 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
82176611 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
82176632 AAAAAGAAA
1 AAAAAGAAA
82176641 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:82178513 original size:20 final size:20
Alignment explanation
Indices: 82178490--82178535 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
82178480 CCAGCTCGAA
*
82178490 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
82178510 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
82178530 TTAGCT
1 TTAGCT
82178536 TACTTTAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:82178517 original size:30 final size:30
Alignment explanation
Indices: 82178482--82178555 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
82178472 AGTTTTTCCC
82178482 AGCTCGAATT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-ATTGAGCTCA-ATTGAGCTTAATTT
* * *
82178512 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGATTGAGCTCAATTGAGCTTAATTT
*
82178542 AGCTCGTTTGAGCT
1 AGCTCGATTGAGCT
82178556 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGATTGAGCTCAATTGAGCTTAATTT
Found at i:82182378 original size:47 final size:47
Alignment explanation
Indices: 82182315--82182784 Score: 787
Period size: 47 Copynumber: 10.0 Consensus size: 47
82182305 GAAATGATAG
*
82182315 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
82182362 TAAGGCCTAATAGCCGATGTGATGAATGCGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82182409 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * ** *
82182456 TAAGGCCTAATAGCTGATGTGATGAATGCAAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
82182503 TAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
82182550 TAAGGCCTAATAGCCGATGTGATGAATGCGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82182597 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
82182644 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82182691 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82182738 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82182785 CGGGGCCGAT
Statistics
Matches: 390, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 390 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:82182955 original size:20 final size:20
Alignment explanation
Indices: 82182909--82182955 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
82182899 AGCTTGTTTC
*
82182909 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
82182929 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82182949 CAGCTCA
1 CAGCTCA
82182956 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82184509 original size:9 final size:9
Alignment explanation
Indices: 82184495--82184528 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
82184485 AGAAGTGAGC
82184495 AAAAAAGAA
1 AAAAAAGAA
*
82184504 AAAAAAGTA
1 AAAAAAGAA
82184513 AAAAAAGAA
1 AAAAAAGAA
82184522 CAAAAAA
1 -AAAAAA
82184529 AAGTGAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.85, C:0.03, G:0.09, T:0.03
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:82187406 original size:20 final size:20
Alignment explanation
Indices: 82187360--82187406 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
82187350 AGCTTGTTTC
*
82187360 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
82187380 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82187400 CAGCTCA
1 CAGCTCA
82187407 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82188971 original size:10 final size:10
Alignment explanation
Indices: 82188949--82188981 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
82188939 AGTGAGCAAT
82188949 AAAAGAA-AA
1 AAAAGAACAA
82188958 AAAAGAACAA
1 AAAAGAACAA
82188968 AAAAGAACAA
1 AAAAGAACAA
82188978 AAAA
1 AAAA
82188982 AAAGTGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAGAACAA
Found at i:82191861 original size:20 final size:20
Alignment explanation
Indices: 82191815--82191861 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
82191805 AGCTTGTTTC
*
82191815 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
82191835 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82191855 CAGCTCA
1 CAGCTCA
82191862 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82193415 original size:21 final size:21
Alignment explanation
Indices: 82193373--82193420 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
82193363 ATCGAAATTC
* ** *
82193373 AAAAAAAAAAGAAGTGAGCAA
1 AAAAAAAAAAAAAAAGAACAA
82193394 AAAAAAAAAAAAAAAGAACAA
1 AAAAAAAAAAAAAAAGAACAA
82193415 AAAAAA
1 AAAAAA
82193421 GTGAAAAGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.83, C:0.04, G:0.10, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAAAAAAAGAACAA
Found at i:82196256 original size:20 final size:20
Alignment explanation
Indices: 82196210--82196256 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
82196200 AGCTTGTTTC
*
82196210 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
82196230 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82196250 CAGCTCA
1 CAGCTCA
82196257 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82200676 original size:20 final size:20
Alignment explanation
Indices: 82200630--82200676 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
82200620 AGCTTGTTTC
*
82200630 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
82200650 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82200670 CAGCTCA
1 CAGCTCA
82200677 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82205103 original size:20 final size:20
Alignment explanation
Indices: 82205057--82205103 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
82205047 AGCTTGTTTC
*
82205057 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
82205077 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82205097 CAGCTCA
1 CAGCTCA
82205104 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82209527 original size:20 final size:20
Alignment explanation
Indices: 82209481--82209527 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
82209471 AGCTTGTTTC
*
82209481 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
82209501 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82209521 CAGCTCA
1 CAGCTCA
82209528 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82213949 original size:20 final size:20
Alignment explanation
Indices: 82213903--82213949 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
82213893 AGCTTGTTTC
*
82213903 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
82213923 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
82213943 CAGCTCA
1 CAGCTCA
82213950 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:82215502 original size:47 final size:47
Alignment explanation
Indices: 82215439--82215676 Score: 352
Period size: 47 Copynumber: 5.1 Consensus size: 47
82215429 GAAATGATAG
* *
82215439 TAAGGCCTAATTGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82215486 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82215533 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82215579 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
82215626 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82215673 TAAG
1 TAAG
82215677 TCCCGAAGGG
Statistics
Matches: 173, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 45 0.26
47 128 0.74
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:82215599 original size:93 final size:94
Alignment explanation
Indices: 82215439--82215676 Score: 352
Period size: 93 Copynumber: 2.5 Consensus size: 94
82215429 GAAATGATAG
* *
82215439 TAAGGCCTAATTGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
82215504 GTGATGAATGTGAAAGTGTATATATGTAA
66 GTGATGAATGTGAAAGTGTATATATGTAA
82215533 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
82215597 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTAA
*** * * * * * * *
82215626 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82215677 TCCCGAAGGG
Statistics
Matches: 130, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
93 83 0.64
94 47 0.36
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTAA
Found at i:82219832 original size:10 final size:10
Alignment explanation
Indices: 82219816--82219873 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
82219806 CAACTCCGAC
82219816 CAGCTCAATT
1 CAGCTCAATT
* *
82219826 GAGCTCATTT
1 CAGCTCAATT
82219836 CAGCTCAA-T
1 CAGCTCAATT
*
82219845 CGAGCTCTATT
1 C-AGCTCAATT
*
82219856 TAGCTACAATT
1 CAGCT-CAATT
82219867 CAGCTCA
1 CAGCTCA
82219874 TTTATTTTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
9 2 0.05
10 26 0.70
11 9 0.24
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:82219839 original size:20 final size:20
Alignment explanation
Indices: 82219816--82219876 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
82219806 CAACTCCGAC
82219816 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
82219836 CAGCTCAATCGAGCTCTATTT
1 CAGCTCAATTGAGCTC-ATTT
*
82219857 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
82219877 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:82221260 original size:11 final size:11
Alignment explanation
Indices: 82221244--82221269 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
82221234 AGGAAATTTG
82221244 AAAAAAAATTC
1 AAAAAAAATTC
82221255 AAAAAAAATTC
1 AAAAAAAATTC
82221266 AAAA
1 AAAA
82221270 TTTTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:82224381 original size:40 final size:40
Alignment explanation
Indices: 82224151--82224382 Score: 308
Period size: 40 Copynumber: 5.8 Consensus size: 40
82224141 CATTTGAATG
* * *
82224151 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * *
82224191 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
82224231 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
82224271 ATATCCGGGCTAAGACCCGAAGGCATTTGTGGGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
82224311 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
82224351 ATA-CCTGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGC
82224383 TTGTGGTTAT
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 175 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:82232633 original size:40 final size:40
Alignment explanation
Indices: 82232403--82232634 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
82232393 CATTTGAATG
* * *
82232403 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * *
82232443 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
82232483 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
82232523 ATATCCGGGCTAAGACCCGAAGGCATTTGTGGGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
82232563 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
82232603 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
82232635 TTGTGGTTAT
Statistics
Matches: 180, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 177 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:82247522 original size:20 final size:21
Alignment explanation
Indices: 82247487--82247526 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
82247477 AGCTTATGCT
82247487 AAGTAAATAGAATGGAATGGA
1 AAGTAAATAGAATGGAATGGA
*
82247508 AAGTAAGTA-AATGGAATGG
1 AAGTAAATAGAATGGAATGG
82247527 TCAATGATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (21 bp):
AAGTAAATAGAATGGAATGGA
Found at i:82256787 original size:13 final size:13
Alignment explanation
Indices: 82256769--82256794 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82256759 GGGGATTTTT
82256769 TTAACTAAACTAA
1 TTAACTAAACTAA
82256782 TTAACTAAACTAA
1 TTAACTAAACTAA
82256795 GAATACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:82262009 original size:20 final size:20
Alignment explanation
Indices: 82261981--82262019 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
82261971 AGGCCAAAAT
82261981 AAAAATTGAAATACATTTTC
1 AAAAATTGAAATACATTTTC
* * *
82262001 AAAATTTGACATTCATTTT
1 AAAAATTGAAATACATTTT
82262020 TACTTTAAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAAATTGAAATACATTTTC
Found at i:82264812 original size:55 final size:54
Alignment explanation
Indices: 82264725--82264979 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
82264715 ATTAGGGTTT
*
82264725 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
82264780 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
82264835 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
82264888 AAGGATACCATATAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * **
82264937 AAGGATACCACGTAAGACCATGACAAGTTATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
82264980 GTACCCACGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 38 0.22
52 7 0.04
53 40 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:82264931 original size:108 final size:110
Alignment explanation
Indices: 82264732--82264932 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
82264722 TTTAAGGATA
* *
82264732 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATATAAGA
*
82264797 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
82264842 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATATAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATATAAG
*
82264904 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
82264933 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATATAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:82271514 original size:30 final size:30
Alignment explanation
Indices: 82271478--82271550 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 30
82271468 GGTTTCATTT
*
82271478 CAGTCACTTAACTT-TCAAAAAGTAACAAAA
1 CAGTCAC-TAACTTATAAAAAAGTAACAAAA
*
82271508 CAGTCACTAACGTTATAAAAAAGTGACAAAA
1 CAGTCACTAAC-TTATAAAAAAGTAACAAAA
82271539 CAGTCACTAACT
1 CAGTCACTAACT
82271551 AACAGTTACC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 10 0.26
31 25 0.64
ACGTcount: A:0.48, C:0.21, G:0.10, T:0.22
Consensus pattern (30 bp):
CAGTCACTAACTTATAAAAAAGTAACAAAA
Found at i:82272085 original size:12 final size:12
Alignment explanation
Indices: 82272070--82272124 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
82272060 TTCAAATTTA
*
82272070 ATTTTGATTTTG
1 ATTTTGATTTCG
*
82272082 ATTTTGCTTTCG
1 ATTTTGATTTCG
82272094 ATTTCT-ATTTCG
1 ATTT-TGATTTCG
* *
82272106 ATTTTGATTACA
1 ATTTTGATTTCG
82272118 ATTTTGA
1 ATTTTGA
82272125 AACACTCACT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
11 1 0.03
12 34 0.94
13 1 0.03
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.58
Consensus pattern (12 bp):
ATTTTGATTTCG
Found at i:82272418 original size:34 final size:34
Alignment explanation
Indices: 82272380--82272485 Score: 87
Period size: 34 Copynumber: 3.2 Consensus size: 34
82272370 ATTGTATGAA
*
82272380 TGCCATTATCAAACTAATCTTTATTGTGTGTATC
1 TGCCATTATCAAACTAATCTTTATTGTATGTATC
***** *
82272414 TGCCATT-TTTTTGT-AT-TTGTCATTGTATG-A-A
1 TGCCATTATCAAACTAATCTT-T-ATTGTATGTATC
*
82272445 TGCCATTATCAAACTAATCTTTATTGTTTGTATC
1 TGCCATTATCAAACTAATCTTTATTGTATGTATC
82272479 TGCCATT
1 TGCCATT
82272486 GTATGAATGT
Statistics
Matches: 51, Mismatches: 14, Indels: 14
0.65 0.18 0.18
Matches are distributed among these distances:
31 9 0.18
32 13 0.25
33 13 0.25
34 16 0.31
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (34 bp):
TGCCATTATCAAACTAATCTTTATTGTATGTATC
Found at i:82272427 original size:65 final size:65
Alignment explanation
Indices: 82272358--82272485 Score: 229
Period size: 65 Copynumber: 2.0 Consensus size: 65
82272348 TTTTGATATG
82272358 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTAATCTTTATTGTGTGTATCTGCCATTTT
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTAATCTTTATTGTGTGTATCTGCCATTTT
* * *
82272423 TTTGTATTTGTCATTGTATGAATGCCATTATCAAACTAATCTTTATTGTTTGTATCTGCCATT
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTAATCTTTATTGTGTGTATCTGCCATT
82272486 GTATGAATGT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.48
Consensus pattern (65 bp):
TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTAATCTTTATTGTGTGTATCTGCCATTTT
Found at i:82272494 original size:48 final size:48
Alignment explanation
Indices: 82272423--82272535 Score: 145
Period size: 48 Copynumber: 2.4 Consensus size: 48
82272413 CTGCCATTTT
* *
82272423 TTTGTATTTGTCATTGTATGAATGCCATTATCAAACTAATCTTTATTG
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTAATCTTTATTG
* * * *
82272471 TTTGTATCTGCCATTGTATGAATGTCATTATCAAATTGATGTTTATTG
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTAATCTTTATTG
* * *
82272519 TGTATATCTACCATTGT
1 TTTGTATCTGCCATTGT
82272536 TTGTATCTGC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (48 bp):
TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTAATCTTTATTG
Found at i:82272581 original size:62 final size:62
Alignment explanation
Indices: 82272467--82272695 Score: 361
Period size: 62 Copynumber: 3.7 Consensus size: 62
82272457 ACTAATCTTT
** * * * * *
82272467 ATTGTTTGTATCTGCCATTGTATGAATGTCATTATCAAATTGATGTTTATTGTGTATATCTACC
1 ATTGTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATATCTGCC
82272531 ATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCC
1 ATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCC
82272593 ATTGTTTG-ATTCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCC
1 ATTGTTTGTA-TCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCC
82272655 ATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGA
1 ATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGA
82272696 CTGCCTTGTT
Statistics
Matches: 156, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
61 1 0.01
62 131 0.84
63 3 0.02
64 21 0.13
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (62 bp):
ATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCC
Found at i:82272711 original size:45 final size:46
Alignment explanation
Indices: 82272650--82272740 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 46
82272640 TTGTGTATAT
82272650 CTGCCATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGA
1 CTGCCATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGA
82272696 CTGCC-TTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGA
1 CTGCCATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGA
82272741 TGTTTATTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 40 0.89
46 5 0.11
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.42
Consensus pattern (46 bp):
CTGCCATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGA
Found at i:82273086 original size:15 final size:15
Alignment explanation
Indices: 82273066--82273105 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
82273056 AACGTGTCTC
*
82273066 GTAGTGATGTATCTG
1 GTAGTGAAGTATCTG
*
82273081 GTAGTGAAGTGTCTG
1 GTAGTGAAGTATCTG
82273096 GTAGTGAAGT
1 GTAGTGAAGT
82273106 TTAATTGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.23, C:0.05, G:0.38, T:0.35
Consensus pattern (15 bp):
GTAGTGAAGTATCTG
Found at i:82274819 original size:43 final size:43
Alignment explanation
Indices: 82274735--82274905 Score: 242
Period size: 43 Copynumber: 4.1 Consensus size: 43
82274725 TCACATACAG
* *
82274735 TGATTGTTGGAAAGCTATTGACT-TTTTTTAATATGTATGCAA
1 TGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATGCAA
* *
82274777 TGATTATTGGAAAGTTGTTGACTATTTTTTAATATGCATGCAA
1 TGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATGCAA
*
82274820 TGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATGTAA
1 TGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATGCAA
* * *
82274863 TGATTGTTGG--TG-TGTTGCCTACTTTTTAATATGCATGCAA
1 TGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATGCAA
82274903 TGA
1 TGA
82274906 GTTTTTTTTA
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
40 28 0.24
41 1 0.01
42 20 0.17
43 68 0.58
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44
Consensus pattern (43 bp):
TGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATGCAA
Found at i:82275593 original size:21 final size:21
Alignment explanation
Indices: 82275567--82275615 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
82275557 TGTTCGAACC
*
82275567 CAGCAAGAGGCTACCCCAAGT
1 CAGCAAGAGGCTACCCCAACT
*
82275588 CAGCAAGAGGGTACCCCAACT
1 CAGCAAGAGGCTACCCCAACT
*
82275609 CAACAAG
1 CAGCAAG
82275616 GTGCCCCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.37, C:0.33, G:0.22, T:0.08
Consensus pattern (21 bp):
CAGCAAGAGGCTACCCCAACT
Found at i:82276244 original size:28 final size:30
Alignment explanation
Indices: 82276212--82276270 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82276202 AGCCATTTTT
82276212 AACAC-ATGT-TAAGCAACAAAAATATTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
* * *
82276240 AACACAATTTGTAATCAACAAAAATTTTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
82276270 A
1 A
82276271 TTTCATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
29 3 0.12
30 18 0.69
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.25
Consensus pattern (30 bp):
AACACAATGTGTAAGCAACAAAAATATTCC
Found at i:82276729 original size:3 final size:3
Alignment explanation
Indices: 82276714--82276764 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
82276704 CCATTTTTCC
* *
82276714 TCT TCT CCT TCT TCT TCT TC- TCTT TCT GCT TC- TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT
82276758 TCT TCT T
1 TCT TCT T
82276765 TTTTTCAAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.00, C:0.35, G:0.02, T:0.63
Consensus pattern (3 bp):
TCT
Found at i:82277385 original size:20 final size:20
Alignment explanation
Indices: 82277343--82277421 Score: 67
Period size: 19 Copynumber: 4.1 Consensus size: 20
82277333 TAAGTTATAG
**
82277343 AAAATTATTAAAATTGTAAA
1 AAAATTATTAAAATAATAAA
*
82277363 AAAATTATTAAAA-AATAAT
1 AAAATTATTAAAATAATAAA
* *
82277382 AAAATT-TTATAA-AA-CAA
1 AAAATTATTAAAATAATAAA
*
82277399 AAAATGTATTAAAATATTAAA
1 AAAAT-TATTAAAATAATAAA
82277420 AA
1 AA
82277422 GTTATAGAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
17 6 0.13
18 8 0.17
19 14 0.30
20 14 0.30
21 4 0.09
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (20 bp):
AAAATTATTAAAATAATAAA
Found at i:82283589 original size:141 final size:140
Alignment explanation
Indices: 82283397--82283679 Score: 399
Period size: 141 Copynumber: 2.0 Consensus size: 140
82283387 TTTAATAAAA
* *
82283397 AATTACAAATGTATTTAGAAAACGAAGAATTAAACTTAAGACTCAAAGATAAAATAATTATTATT
1 AATTACAAATATATTTAGAAAACGAAGAATTAAACTTAAGACTCAAAGATAAAACAATTATTATT
* * *
82283462 TAACTATTTAA-CTAAATG-AGTTAATATGTTAAAAATATTAATTAAAAATAATAAAAAGTTTAA
66 TAACTATTTAATC-AAA-GCAGCTAATATGTTAAAAAAATT-ATTAAAAATAATAAAAAGCTTAA
*
82283525 AACAATATGAAAT
128 AACAACATGAAAT
* * * * ** * *
82283538 AATTACAAATATGTTTAGAAGAGGAGGAATTAAACTTGGGACTCAATGATAAAACCATTATTATT
1 AATTACAAATATATTTAGAAAACGAAGAATTAAACTTAAGACTCAAAGATAAAACAATTATTATT
82283603 TAACTATTTAATCAAAGCAGCTAATATGTTAAAAAAATTATTAAAAATAATAAAAAGCTTAAAAC
66 TAACTATTTAATCAAAGCAGCTAATATGTTAAAAAAATTATTAAAAATAATAAAAAGCTTAAAAC
82283668 AACATGAAAT
131 AACATGAAAT
82283678 AA
1 AA
82283680 AAAGTACAAA
Statistics
Matches: 126, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
140 37 0.29
141 88 0.70
142 1 0.01
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (140 bp):
AATTACAAATATATTTAGAAAACGAAGAATTAAACTTAAGACTCAAAGATAAAACAATTATTATT
TAACTATTTAATCAAAGCAGCTAATATGTTAAAAAAATTATTAAAAATAATAAAAAGCTTAAAAC
AACATGAAAT
Found at i:82283730 original size:140 final size:137
Alignment explanation
Indices: 82283423--82283779 Score: 358
Period size: 140 Copynumber: 2.5 Consensus size: 137
82283413 AGAAAACGAA
* ** *
82283423 GAATTAAACTTAAGACTCAAAGATAAAATAATTATTATTTAACTATTTAACTAAATGAGTTAATA
1 GAATCAAACTTAAGACTCAAAGATAAAACCATTATTATTTAACTATTTAAC-AAA-GAGCTAATA
* * * *
82283488 TGTTAAAAATATTAATTAAAAATAATAAAAAGTTTAAAACAATATGAAATAATTACAAATATGTT
64 TGTTAAAAAAATTAATTAAAAATAATAAAAAGCTTAAAACAACATGAAATAAGTACAAATATG--
**
82283553 TAGAAGAGGAG
127 TAGAAGAAAAG
* ** *
82283564 GAATTAAACTTGGGACTCAATGATAAAACCATTATTATTTAACTATTTAATCAAAGCAGCTAATA
1 GAATCAAACTTAAGACTCAAAGATAAAACCATTATTATTTAACTATTTAA-CAAAG-AGCTAATA
82283629 TGTTAAAAAAATT-ATTAAAAATAATAAAAAGCTTAAAACAACATGAAATAAAAAGTACAAATAT
64 TGTTAAAAAAATTAATTAAAAATAATAAAAAGCTTAAAACAACATGAAAT---AAGTACAAATAT
** *
82283693 G-AGCGGAAAAT
126 GTAGAAGAAAAG
* * * * ** * *
82283704 GTATCAAACCTAAGACTCAAAAATAAAACCACTAACATTTAACTATCTAACCAAAGAAACTAATT
1 GAATCAAACTTAAGACTCAAAGATAAAACCATTATTATTTAACTATTTAA-CAAAG-AGCTAA-T
*
82283769 ATATTAAAAAA
63 ATGTTAAAAAA
82283780 GTCAAAAAAT
Statistics
Matches: 180, Mismatches: 30, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
140 89 0.49
141 78 0.43
142 1 0.01
143 12 0.07
ACGTcount: A:0.53, C:0.10, G:0.09, T:0.29
Consensus pattern (137 bp):
GAATCAAACTTAAGACTCAAAGATAAAACCATTATTATTTAACTATTTAACAAAGAGCTAATATG
TTAAAAAAATTAATTAAAAATAATAAAAAGCTTAAAACAACATGAAATAAGTACAAATATGTAGA
AGAAAAG
Found at i:82284735 original size:10 final size:12
Alignment explanation
Indices: 82284706--82284734 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
82284696 TGAAAAAAAT
82284706 AATATATTACAA
1 AATATATTACAA
82284718 AATATATTACAA
1 AATATATTACAA
82284730 AATAT
1 AATAT
82284735 TTAACTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (12 bp):
AATATATTACAA
Found at i:82289392 original size:11 final size:11
Alignment explanation
Indices: 82289376--82289400 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82289366 TTATTGATAA
82289376 TTTACGATGGT
1 TTTACGATGGT
82289387 TTTACGATGGT
1 TTTACGATGGT
82289398 TTT
1 TTT
82289401 GCCCTTGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (11 bp):
TTTACGATGGT
Found at i:82289808 original size:28 final size:28
Alignment explanation
Indices: 82289775--82289839 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
82289765 TTTGAATCAT
* *
82289775 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTGGCACACTAAGTGCCATTC
*
82289803 TCAATATCTGGCACACTAAGTGCCATTC
1 TCAATATTTGGCACACTAAGTGCCATTC
82289831 TCAATATTT
1 TCAATATTT
82289840 CGTACACTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (28 bp):
TCAATATTTGGCACACTAAGTGCCATTC
Found at i:82289846 original size:28 final size:28
Alignment explanation
Indices: 82289775--82289856 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
82289765 TTTGAATCAT
* *
82289775 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
82289803 TCAATATCTGGCACACTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
82289831 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
82289857 ATTTGATTGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:82296720 original size:93 final size:93
Alignment explanation
Indices: 82296561--82296731 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
82296551 GGATGGTTGA
* *
82296561 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
82296626 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
82296654 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
82296719 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82296732 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82296734 original size:46 final size:46
Alignment explanation
Indices: 82296565--82296736 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
82296555 GGTTGAGCAT
* * *
82296565 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
82296611 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
82296656 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
82296704 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82296737 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 2 0.02
46 60 0.57
47 28 0.27
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:82315780 original size:32 final size:32
Alignment explanation
Indices: 82315730--82315807 Score: 120
Period size: 32 Copynumber: 2.4 Consensus size: 32
82315720 TGTCCCAAGC
* *
82315730 CACATGGGCATGTGTGACCACACGGTTCAACA
1 CACATGGGCGTGTGTGACCACACGGTTAAACA
*
82315762 CACACGGGCGTGTGTGACCACACGGTTAAACA
1 CACATGGGCGTGTGTGACCACACGGTTAAACA
*
82315794 CACATGGGTGTGTG
1 CACATGGGCGTGTG
82315808 ACTCTCCAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (32 bp):
CACATGGGCGTGTGTGACCACACGGTTAAACA
Found at i:82333660 original size:40 final size:40
Alignment explanation
Indices: 82333605--82333786 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
82333595 TATTTGGATG
*
82333605 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
82333645 ATAACCGAACTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
82333685 ATATCC-AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGA-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
82333725 ATAATCGGGCTAAATCCCGAAGGCATTTGAGTGAG-TAGCT
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
82333765 ATATCCG-GCTAATTCCCGAAGG
1 ATAACCGAGCTAAGTCCCGAAGG
82333787 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 17 0.13
40 109 0.87
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:82333745 original size:80 final size:79
Alignment explanation
Indices: 82333612--82333786 Score: 262
Period size: 80 Copynumber: 2.2 Consensus size: 79
82333602 ATGATAACCG
* *
82333612 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAACTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAACTAAATCCCGAAGGCATTTGAGC
82333677 GAGTTA-CTATATCC
66 GAG-TAGCTATATCC
* **
82333691 AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCGGGCTAAATCCCGAAGGCATTTGAG
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAACTAAATCCCGAAGGCATTTGAG
*
82333756 TGAGTAGCTATATCC
65 CGAGTAGCTATATCC
*
82333771 GGCTAATTCCCGAAGG
1 GGCTAAGTCCCGAAGG
82333787 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
79 17 0.20
80 70 0.80
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGAACTAAATCCCGAAGGCATTTGAGC
GAGTAGCTATATCC
Found at i:82337397 original size:21 final size:20
Alignment explanation
Indices: 82337365--82337406 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
82337355 AAATTTTATC
*
82337365 TTATAAGAATTTTTGTAAAAA
1 TTATAAGAA-TTTTCTAAAAA
82337386 TTATAATG-ATTTTCTAAAAA
1 TTATAA-GAATTTTCTAAAAA
82337406 T
1 T
82337407 AGAATAGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 11 0.58
21 7 0.37
22 1 0.05
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (20 bp):
TTATAAGAATTTTCTAAAAA
Found at i:82338225 original size:26 final size:26
Alignment explanation
Indices: 82338196--82338255 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
82338186 TCCCTTTGAA
* * *
82338196 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
82338222 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
82338250 CCATTC
1 TCATTC
82338256 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:82338241 original size:28 final size:28
Alignment explanation
Indices: 82338210--82338281 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
82338200 TCGATATTTT
*
82338210 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
82338238 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
82338266 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
82338282 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Done.