Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 251 of 356
Found at i:82345001 original size:93 final size:93
Alignment explanation
Indices: 82344842--82345012 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
82344832 GGATGGTTGA
* *
82344842 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
82344907 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
82344935 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
82345000 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82345013 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82345015 original size:46 final size:46
Alignment explanation
Indices: 82344846--82345017 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
82344836 GGTTGAGCAT
* * *
82344846 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
82344892 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
82344937 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
82344985 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82345018 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 2 0.02
46 60 0.57
47 28 0.27
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:82353589 original size:30 final size:31
Alignment explanation
Indices: 82353534--82353592 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
82353524 CACCCTTAAA
* * *
82353534 ATATTTTCACTATTAGTCCTTCAAATTTTTT
1 ATATTTACACTATTAATCCCTCAAATTTTTT
82353565 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
82353593 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.19, G:0.02, T:0.51
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTT
Found at i:82353600 original size:30 final size:31
Alignment explanation
Indices: 82353534--82353602 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
82353524 CACCCTTAAA
* * * *
82353534 ATATTTTCACTATTAGTCCTTCAAATTTTTT
1 ATATTTACACTATTAATCCCTCAAATTTTTG
82353565 ATATTTACACT-TTAATCCCTCAAA-TTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTTG
82353594 AGTATTTAC
1 A-TATTTAC
82353603 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.15
30 18 0.55
31 10 0.30
ACGTcount: A:0.29, C:0.17, G:0.04, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTG
Found at i:82356603 original size:19 final size:19
Alignment explanation
Indices: 82356579--82356669 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
82356569 ATAATCTTCA
82356579 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82356598 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82356617 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
82356634 ATGAT-TACAATCTTAAAT
1 ATGATATGCAATCTTAGAT
*
82356652 ATAATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
82356670 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.25
18 14 0.22
19 35 0.54
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:82356983 original size:17 final size:17
Alignment explanation
Indices: 82356959--82356993 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
82356949 TGTTTCCCTG
*
82356959 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
82356977 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
82356994 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:82366468 original size:44 final size:44
Alignment explanation
Indices: 82366403--82366491 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
82366393 AAGAATGGAC
*
82366403 CAAGTACTGTTGAGATGTGTTGACACCGTGGAAGCTAAGTTAAT
1 CAAGTACTGTTGAGATATGTTGACACCGTGGAAGCTAAGTTAAT
82366447 CAAGTACTGTTGAGATATGTTGACACCGTGGAAGCTAAGTTAAT
1 CAAGTACTGTTGAGATATGTTGACACCGTGGAAGCTAAGTTAAT
82366491 C
1 C
82366492 TTGGAAGAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
CAAGTACTGTTGAGATATGTTGACACCGTGGAAGCTAAGTTAAT
Found at i:82368955 original size:78 final size:78
Alignment explanation
Indices: 82368847--82369141 Score: 475
Period size: 78 Copynumber: 3.8 Consensus size: 78
82368837 CGGAGAAACA
** * *
82368847 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
82368912 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
82368925 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
82368990 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
82369003 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
82369067 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
82369081 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAAATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
82369142 GTGTTTACAT
Statistics
Matches: 199, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 1 0.01
78 197 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:82369279 original size:44 final size:45
Alignment explanation
Indices: 82369155--82369354 Score: 231
Period size: 45 Copynumber: 4.5 Consensus size: 45
82369145 TTTACATCGA
* * * *
82369155 AGCAGATCCAAGATGACAGATTTGCCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
* * * * * *
82369200 AACAAATCGGAGATAACAGATTTGGCATTTTTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
* * *
82369245 AGCAGATTGAAGA-AGCAGATTTGGTGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
* * *
82369289 AGAAGATCGAAGATAACAGATTTGACGTCTCTATATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
* *
82369334 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
82369355 ATCGCCTTCC
Statistics
Matches: 128, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
44 37 0.29
45 91 0.71
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
Found at i:82369282 original size:89 final size:90
Alignment explanation
Indices: 82369155--82369354 Score: 244
Period size: 89 Copynumber: 2.2 Consensus size: 90
82369145 TTTACATCGA
* *** *
82369155 AGCAGATCCAAGAT-GACAGATTTGCCATCTCTGTATTAGACGGGGA-ACAAATCGGAGATAACA
1 AGCAGATCAAAGATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGA-AAATCGAAGATAACA
* * * *
82369218 GATTTGGCATTTTTGTATTAGACGGGG
64 GATTTGACATCTCTATATTAGACGGGG
** *
82369245 AGCAGATTGAAGA-AGCAGATTTGGTGTCTCTGTATTAGACGGGGAGAAGATCGAAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGTGTCTCTGTATTAGACGGGGAGAAAATCGAAGATAACAGA
*
82369309 TTTGACGTCTCTATATTAGACGGGG
66 TTTGACATCTCTATATTAGACGGGG
82369334 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
82369355 ATCGCCTTCC
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
89 73 0.78
90 20 0.22
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGTGTCTCTGTATTAGACGGGGAGAAAATCGAAGATAACAGA
TTTGACATCTCTATATTAGACGGGG
Found at i:82369731 original size:19 final size:19
Alignment explanation
Indices: 82369707--82369797 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
82369697 ATAATCTTCA
82369707 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82369726 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82369745 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82369762 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82369780 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
82369798 GGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:82369778 original size:35 final size:37
Alignment explanation
Indices: 82369707--82369797 Score: 150
Period size: 35 Copynumber: 2.5 Consensus size: 37
82369697 ATAATCTTCA
82369707 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
82369745 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
82369780 ATGATATGCAATCTTAGA
1 ATGATA-GCAATCTTAGA
82369798 GGATATGATT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.37
36 16 0.31
37 10 0.20
38 6 0.12
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:82369833 original size:21 final size:23
Alignment explanation
Indices: 82369789--82369833 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
82369779 TATGATATGC
*
82369789 AATCTTAGAGGATATGATTTTGT
1 AATCTTAGAGGATATGAATTTGT
*
82369812 AATCTTAGA-GAT-TTAATTTGT
1 AATCTTAGAGGATATGAATTTGT
82369833 A
1 A
82369834 GATACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 3 0.15
23 9 0.45
ACGTcount: A:0.33, C:0.04, G:0.18, T:0.44
Consensus pattern (23 bp):
AATCTTAGAGGATATGAATTTGT
Found at i:82370110 original size:17 final size:17
Alignment explanation
Indices: 82370086--82370120 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
82370076 ATGTTTTCCT
*
82370086 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
82370104 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
82370121 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:82371033 original size:17 final size:16
Alignment explanation
Indices: 82371011--82371051 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
82371001 TAATACCAAA
82371011 TATATTTTATAAATTTT
1 TATATTTTAT-AATTTT
82371028 TATATTTTATAATTTT
1 TATATTTTATAATTTT
*
82371044 TAAATTTT
1 TATATTTT
82371052 TTATAGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TATATTTTATAATTTT
Found at i:82371052 original size:17 final size:17
Alignment explanation
Indices: 82371015--82371062 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
82371005 ACCAAATATA
*
82371015 TTTTATAAATTTTTATA-
1 TTTTAT-AATTTTTAAAT
82371032 TTTTATAATTTTTAAATT
1 TTTTATAATTTTTAAA-T
*
82371050 TTTTATAGTTTTT
1 TTTTATAATTTTT
82371063 TAATCTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 9 0.33
17 6 0.22
18 12 0.44
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTTATAATTTTTAAAT
Found at i:82381192 original size:21 final size:21
Alignment explanation
Indices: 82381166--82381205 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
82381156 TTAAAAAATT
82381166 TTAAAAATATAAAAGTATTTA
1 TTAAAAATATAAAAGTATTTA
82381187 TTAAAAATATAAAAGTATT
1 TTAAAAATATAAAAGTATT
82381206 CTAATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
TTAAAAATATAAAAGTATTTA
Found at i:82388063 original size:7 final size:7
Alignment explanation
Indices: 82388053--82388087 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
82388043 AGAAGATAGA
*
82388053 TGAAAAG
1 TGAAGAG
82388060 TGAAGAG
1 TGAAGAG
82388067 TGAAGAG
1 TGAAGAG
82388074 TGAAGAG
1 TGAAGAG
82388081 TGAAGAG
1 TGAAGAG
82388088 GCTTTATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.46, C:0.00, G:0.40, T:0.14
Consensus pattern (7 bp):
TGAAGAG
Found at i:82388958 original size:29 final size:28
Alignment explanation
Indices: 82388920--82388977 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
82388910 AAACCTCATT
* *
82388920 TATTTTTTACATCAATTTTTTTATAAATA
1 TATTTGTTACAT-AATATTTTTATAAATA
* *
82388949 TATTTGTTACATGATATTTTTATCAATA
1 TATTTGTTACATAATATTTTTATAAATA
82388977 T
1 T
82388978 CATGGGCGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (28 bp):
TATTTGTTACATAATATTTTTATAAATA
Found at i:82389498 original size:2 final size:2
Alignment explanation
Indices: 82389491--82389519 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
82389481 GAGATAATTA
82389491 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82389520 AAAGAGGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82389890 original size:3 final size:3
Alignment explanation
Indices: 82389884--82389908 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
82389874 CTTCTTCTTC
82389884 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
82389909 TTAATCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:82394087 original size:26 final size:26
Alignment explanation
Indices: 82394056--82394163 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82394046 TGAAATGCCC
*
82394056 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
82394082 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
82394108 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
82394134 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82394160 ATCA
1 ATCA
82394164 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82401764 original size:21 final size:21
Alignment explanation
Indices: 82401740--82401779 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82401730 TGTCCCCTCT
*
82401740 ACATGGGCTTGTGGGGCCTTC
1 ACATGGGCGTGTGGGGCCTTC
*
82401761 ACATGGGCGTGTGTGGCCT
1 ACATGGGCGTGTGGGGCCT
82401780 CCATATAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.40, T:0.28
Consensus pattern (21 bp):
ACATGGGCGTGTGGGGCCTTC
Found at i:82415079 original size:11 final size:11
Alignment explanation
Indices: 82415065--82415093 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
82415055 AAAAACATAT
82415065 AAAAAAGAAAG
1 AAAAAAGAAAG
82415076 AAAAAAGAAAG
1 AAAAAAGAAAG
82415087 AAAAAAG
1 AAAAAAG
82415094 GTACCTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:82415687 original size:3 final size:3
Alignment explanation
Indices: 82415673--82415849 Score: 91
Period size: 3 Copynumber: 58.7 Consensus size: 3
82415663 GTTTTATCAC
* * * * *
82415673 ATT ATC ATT ATT ATT ATT ATT ATT ATT -TT GTT AAT ATT ACT ATT ATA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
82415720 ATT A-T ATT -TT ATT TTT GTGT -TT ATTT ATTT ATT CATT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT A-TT A-TT ATT -ATT ATT ATT ATT
* ** * *
82415765 AATT CATT AAT -TT ATT ATT AAC A-T ATT CTT ATT ATT TTT ATT AATGT
1 -ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -AT-T
* *
82415812 ATT ATC ACT A-T ATTT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT AT
82415850 ATTTTTACCC
Statistics
Matches: 135, Mismatches: 24, Indels: 30
0.71 0.13 0.16
Matches are distributed among these distances:
2 13 0.10
3 98 0.73
4 23 0.17
5 1 0.01
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:82415763 original size:16 final size:17
Alignment explanation
Indices: 82415739--82415781 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
82415729 TATTTTTGTG
*
82415739 TTTATTTATTTATTCAT
1 TTTATTTATTAATTCAT
82415756 TTTA-TTATTAATTCA-
1 TTTATTTATTAATTCAT
*
82415771 TTAATTTATTA
1 TTTATTTATTA
82415782 TTAACATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 3 0.13
16 16 0.70
17 4 0.17
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTATTTATTAATTCAT
Found at i:82415991 original size:15 final size:15
Alignment explanation
Indices: 82415971--82416005 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
82415961 TTATTATGTT
82415971 TATTATTACCATTAA
1 TATTATTACCATTAA
* *
82415986 TATTATTATCATTAC
1 TATTATTACCATTAA
82416001 TATTA
1 TATTA
82416006 CTATCAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTATTACCATTAA
Found at i:82423241 original size:22 final size:22
Alignment explanation
Indices: 82423209--82423250 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
82423199 ATGCTGCAAA
*
82423209 ACCATGCAATTTTCAACAATTT
1 ACCATGCAATTGTCAACAATTT
*
82423231 ACCATGTAATTGTCAACAAT
1 ACCATGCAATTGTCAACAAT
82423251 CTCCACCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.33
Consensus pattern (22 bp):
ACCATGCAATTGTCAACAATTT
Found at i:82426479 original size:26 final size:26
Alignment explanation
Indices: 82426450--82426557 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82426440 TGGTACAAAT
82426450 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82426476 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82426502 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82426528 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82426554 TGAT
1 TGAT
82426558 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82428148 original size:20 final size:21
Alignment explanation
Indices: 82428109--82428151 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
82428099 CATGTTTGAC
82428109 TGTTGTTATTTACTGCATGCA
1 TGTTGTTATTTACTGCATGCA
82428130 TGTTGTTA-TTACCTG-ATGCA
1 TGTTGTTATTTA-CTGCATGCA
82428150 TG
1 TG
82428152 GGATTGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.19, C:0.14, G:0.21, T:0.47
Consensus pattern (21 bp):
TGTTGTTATTTACTGCATGCA
Found at i:82442180 original size:46 final size:46
Alignment explanation
Indices: 82442020--82442180 Score: 168
Period size: 46 Copynumber: 3.5 Consensus size: 46
82442010 TGATTGAGCA
*
82442020 TTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
1 TTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
* * * * *
82442066 TTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCGAACTCATTGAG
1 TTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CCGAACTCGTTGAG
* *
82442113 TTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAG
1 TTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
82442159 TTGAGTCCGAGTTCGCTTATGG
1 TTGAGTCCGAGTTCACTTATGG
82442181 GCGGGTTACA
Statistics
Matches: 91, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 4 0.04
46 46 0.51
47 27 0.30
48 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
Found at i:82451714 original size:18 final size:18
Alignment explanation
Indices: 82451690--82451732 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
82451680 GGGAGTTGGG
82451690 ATTATTTTCTT-AATTTCTT
1 ATTATTTT-TTAAATTT-TT
82451709 -TTATTTTTTAAATTTTT
1 ATTATTTTTTAAATTTTT
82451726 ATTATTT
1 ATTATTT
82451733 CCCAAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTATTTTTTAAATTTTT
Found at i:82457675 original size:28 final size:28
Alignment explanation
Indices: 82457612--82457793 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
82457602 ATATTAAGTC
* *
82457612 CGCACACTCAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
82457639 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
82457667 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
82457695 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
82457723 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
82457751 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
82457780 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82457794 CAATCTCATG
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 21 0.15
28 103 0.72
29 19 0.13
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82476055 original size:13 final size:13
Alignment explanation
Indices: 82476037--82476061 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82476027 TATTATCAAC
82476037 TCAGAATTCAAAA
1 TCAGAATTCAAAA
82476050 TCAGAATTCAAA
1 TCAGAATTCAAA
82476062 TCACACTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (13 bp):
TCAGAATTCAAAA
Found at i:82483207 original size:36 final size:36
Alignment explanation
Indices: 82483155--82483225 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
82483145 ATTTAACTTT
82483155 AGAGTTAGACCATATCCATGACGTATTT-CACGTCTC
1 AGAGTTAGACCATATCCATGACGT-TTTCCACGTCTC
*
82483191 AGAGTTAGACCGTATCCATGACGTTTTCCACGTCT
1 AGAGTTAGACCATATCCATGACGTTTTCCACGTCT
82483226 TTATGTTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
35 3 0.09
36 30 0.91
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (36 bp):
AGAGTTAGACCATATCCATGACGTTTTCCACGTCTC
Found at i:82491082 original size:17 final size:17
Alignment explanation
Indices: 82491060--82491094 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
82491050 GGCCTCAAGT
82491060 AAGGTTTCTGCGGCCCG
1 AAGGTTTCTGCGGCCCG
82491077 AAGGTTTCTGCGGCCCG
1 AAGGTTTCTGCGGCCCG
82491094 A
1 A
82491095 GCCCTACCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.29, G:0.34, T:0.23
Consensus pattern (17 bp):
AAGGTTTCTGCGGCCCG
Found at i:82491976 original size:33 final size:35
Alignment explanation
Indices: 82491910--82491988 Score: 90
Period size: 33 Copynumber: 2.3 Consensus size: 35
82491900 ATATATTTTC
* *
82491910 TATTTTTATTATATTATTAGATTAACATTATAAAAA
1 TATTTTTAATATATTATTA-ATTAACATAATAAAAA
* *
82491946 TATTTTTAATATATTATT-A-TAAGATAATAAAAT
1 TATTTTTAATATATTATTAATTAACATAATAAAAA
*
82491979 TATTATTAAT
1 TATTTTTAAT
82491989 TATAATAGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
33 20 0.53
34 1 0.03
36 17 0.45
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.51
Consensus pattern (35 bp):
TATTTTTAATATATTATTAATTAACATAATAAAAA
Found at i:82494192 original size:13 final size:13
Alignment explanation
Indices: 82494156--82494199 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
82494146 TCAATATTTA
82494156 ATTTTTTAAATTAAT
1 ATTTTTTAAA--AAT
*
82494171 TTTTATTTAAAAAT
1 ATTT-TTTAAAAAT
82494185 ATTTTTTAAAAAT
1 ATTTTTTAAAAAT
82494198 AT
1 AT
82494200 AATACACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 11 0.42
14 6 0.23
15 3 0.12
16 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTTTTTAAAAAT
Found at i:82498253 original size:18 final size:19
Alignment explanation
Indices: 82498227--82498273 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
82498217 ACATGTTCGG
*
82498227 TTATTTATTAAAGACAAAA
1 TTATTTATTAAAGAAAAAA
*
82498246 TT-TTTATTTAAGGAAAAAA
1 TTATTTA-TTAAAGAAAAAA
82498265 TTATTTATT
1 TTATTTATT
82498274 TATTTTAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 4 0.17
19 16 0.67
20 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (19 bp):
TTATTTATTAAAGAAAAAA
Found at i:82499838 original size:127 final size:125
Alignment explanation
Indices: 82499677--82499931 Score: 465
Period size: 127 Copynumber: 2.0 Consensus size: 125
82499667 GCTTATGGAA
82499677 ACAAAATTGAATCTTAATATAGAAATTGAAAAGGAAGAGAGGTATTAGGAGCAAAGGGAAAGAGC
1 ACAAAATTGAATCTTAATATAGAAATTGAAAAGGAAGAGAGGTATTAGGAGCAAAGGGAAAGAGC
82499742 AAACTAGCTAAAATTGGGGGACAAAAACACAATGTTTTTCATCAGTTTGCTTCCCAAAAGAG
66 AAACTAGCT--AATTGGGGGACAAAAACACAATGTTTTTCATCAGTTTGCTTCCCAAAAGAG
*
82499804 ACAAAATTGAATCTTAATATAGAAATTGAAAAGGAAGAGAGGTATTGGGAGCAAAGGGAAAGAGC
1 ACAAAATTGAATCTTAATATAGAAATTGAAAAGGAAGAGAGGTATTAGGAGCAAAGGGAAAGAGC
* *
82499869 AAACTGGCTAATTGGGGGACAAAAACACAATGTTTTTCATCAGTTTGCTTCCTAAAAGAG
66 AAACTAGCTAATTGGGGGACAAAAACACAATGTTTTTCATCAGTTTGCTTCCCAAAAGAG
82499929 ACA
1 ACA
82499932 CACAAATCGT
Statistics
Matches: 125, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
125 53 0.42
127 72 0.58
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (125 bp):
ACAAAATTGAATCTTAATATAGAAATTGAAAAGGAAGAGAGGTATTAGGAGCAAAGGGAAAGAGC
AAACTAGCTAATTGGGGGACAAAAACACAATGTTTTTCATCAGTTTGCTTCCCAAAAGAG
Found at i:82509070 original size:57 final size:57
Alignment explanation
Indices: 82508977--82509133 Score: 199
Period size: 57 Copynumber: 2.8 Consensus size: 57
82508967 ATCATATAAC
* * ** * *
82508977 AGGATTACCAGTCCAGGCTAAATCCTATCTCCAACATATGCTCACAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACATATACTCACAAGAGCTCAATT
* * * *
82509034 AGGATTATCAGTCTAGGTTAAATCCTTTATGTAACATATACTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACATATACTCACAAGAGCTCAATT
*
82509091 AGGATTACCAGTCCAGGCTAAATCC-TAATTGTAACATATACTC
1 AGGATTACCAGTCCAGGCTAAATCCTTTA-TGTAACATATACTC
82509134 GAGAGGGATT
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
56 2 0.02
57 83 0.98
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACATATACTCACAAGAGCTCAATT
Found at i:82513777 original size:26 final size:26
Alignment explanation
Indices: 82513727--82513777 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
82513717 TTTATTTCAA
* *
82513727 TATGCAATATTATACATGAACTTTTT
1 TATGCAATATTATACATAAAATTTTT
* *
82513753 TATGCAATTTTATTCATAAAATTTT
1 TATGCAATATTATACATAAAATTTT
82513778 ATTTGATTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.49
Consensus pattern (26 bp):
TATGCAATATTATACATAAAATTTTT
Found at i:82519328 original size:59 final size:59
Alignment explanation
Indices: 82519170--82519342 Score: 155
Period size: 54 Copynumber: 2.9 Consensus size: 59
82519160 TATTTATATT
* * *
82519170 AATTTATATTTCATGTATAATTATATTAAATTATTCAAATATTATTTATCCTTATATTTGA
1 AATTTATATTTCATGTATCATTATATTAAATTATT-AAATA-TATTTATCATTATACTTGA
* *
82519231 ATTTTTAAAATAGTTT-ATGTATCATTA-ATT---TTA-CAAATA-ATTTAT-ATTAATTACTTG
1 A-ATTT---ATA-TTTCATGTATCATTATATTAAATTATTAAATATATTTATCATT-A-TACTTG
82519288 A
59 A
82519289 AATTTATATTTCATGTATCATTATATTAAATTATTAAATATCATTTATCATTAT
1 AATTTATATTTCATGTATCATTATATTAAATTATTAAATAT-ATTTATCATTAT
82519343 TTTTAAATTT
Statistics
Matches: 89, Mismatches: 7, Indels: 33
0.69 0.05 0.26
Matches are distributed among these distances:
53 3 0.03
54 14 0.16
55 3 0.03
56 2 0.02
57 10 0.11
58 10 0.11
59 10 0.11
60 1 0.01
61 11 0.12
62 6 0.07
64 3 0.03
65 13 0.15
66 3 0.03
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.51
Consensus pattern (59 bp):
AATTTATATTTCATGTATCATTATATTAAATTATTAAATATATTTATCATTATACTTGA
Found at i:82519351 original size:59 final size:58
Alignment explanation
Indices: 82519155--82519449 Score: 157
Period size: 62 Copynumber: 4.9 Consensus size: 58
82519145 TTATCAAAGG
* *
82519155 ATCATTATTTATATTAATTTATATTTCATGTATAATTATATTAAATTATTCAAATATTATTT
1 ATCATTATTT-T-TAAATTTATATTTCATGTATCATTATATTAAATTATT-AAATA-TATTT
* * * *
82519217 ATCCTTATATTTGAATTTTTAAAATAGTTT-ATGTATCATTA-ATT---TTA-CAAATA-ATTT
1 ATCATTAT-TTTTAA-ATTT---ATA-TTTCATGTATCATTATATTAAATTATTAAATATATTT
*
82519274 AT-ATTAATTACTTGAAATTTATATTTCATGTATCATTATATTAAATTATTAAATATCATTT
1 ATCATT-ATT--TTTAAATTTATATTTCATGTATCATTATATTAAATTATTAAATAT-ATTT
* * * * *
82519335 ATCATTATTTTTAAATTTTTAAATATTCTATGTATAATTAATTTTAAA--AATAATTATATTT
1 ATCATTATTTTTAAA--TTTATAT-TTC-ATGTATCATT-ATATTAAATTATTAAATATATTT
* * * *
82519396 GAAC-GTA--TTTAAATTTTATATTTCATTTATCATTATAGTAAATTATTTAAATAT
1 -ATCATTATTTTTAAA-TTTATATTTCATGTATCATTATATTAAATTA-TTAAATAT
82519450 CATCTAAGTC
Statistics
Matches: 182, Mismatches: 24, Indels: 58
0.69 0.09 0.22
Matches are distributed among these distances:
53 3 0.02
54 14 0.08
55 9 0.05
56 11 0.06
57 15 0.08
58 21 0.12
59 21 0.12
61 25 0.14
62 26 0.14
63 11 0.06
64 10 0.05
65 13 0.07
66 3 0.02
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.52
Consensus pattern (58 bp):
ATCATTATTTTTAAATTTATATTTCATGTATCATTATATTAAATTATTAAATATATTT
Found at i:82519357 original size:31 final size:30
Alignment explanation
Indices: 82519299--82519374 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 30
82519289 AATTTATATT
82519299 TCATGTATCATTATATTAAATTATTAAATA
1 TCATGTATCATTATATTAAATTATTAAATA
* * *
82519329 TCATTTATCATTATTTTTAAATTTTTAAATA
1 TCATGTATCATTA-TATTAAATTATTAAATA
*
82519360 TTCTATGTATAATTA
1 -TC-ATGTATCATTA
82519375 ATTTTAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 12 0.32
31 15 0.39
32 2 0.05
33 9 0.24
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.53
Consensus pattern (30 bp):
TCATGTATCATTATATTAAATTATTAAATA
Found at i:82519414 original size:119 final size:118
Alignment explanation
Indices: 82519170--82519452 Score: 376
Period size: 119 Copynumber: 2.4 Consensus size: 118
82519160 TATTTATATT
* * * *
82519170 AATTTATATTTCATGTATAATTATATTAAATTATTCAAATATTATTTATCCTTATATTTGAATTT
1 AATTTATATTTCATGTATCATTATATTAAATTATT-AAATATCATTTATCATTATATTTAAATTT
* * *
82519235 TTAAAATAGTTTATGTATCATTAATTTTACAAATAATTTATATTAATTACTTGA
65 TTAAAATAGTTTATGTATAATTAATTTTAAAAATAATTTATATTAAGTACTTGA
*
82519289 AATTTATATTTCATGTATCATTATATTAAATTATTAAATATCATTTATCATTATTTTTAAATTTT
1 AATTTATATTTCATGTATCATTATATTAAATTATTAAATATCATTTATCATTATATTTAAATTTT
*
82519354 T-AAATA-TTCTATGTATAATTAATTTTAAAAATAA-TTATATTTGAACGTA-TTTA
66 TAAAATAGTT-TATGTATAATTAATTTTAAAAATAATTTATA-TT-AA-GTACTTGA
* *
82519407 AATTTTATATTTCATTTATCATTATAGTAAATTATTTAAATATCAT
1 AA-TTTATATTTCATGTATCATTATATTAAATTA-TTAAATATCAT
82519453 CTAAGTCAAT
Statistics
Matches: 147, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
116 7 0.05
117 30 0.20
118 34 0.23
119 65 0.44
120 11 0.07
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.52
Consensus pattern (118 bp):
AATTTATATTTCATGTATCATTATATTAAATTATTAAATATCATTTATCATTATATTTAAATTTT
TAAAATAGTTTATGTATAATTAATTTTAAAAATAATTTATATTAAGTACTTGA
Found at i:82525576 original size:21 final size:21
Alignment explanation
Indices: 82525552--82525605 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
82525542 ATATGAGTTT
82525552 GTGTTAAATTGAATAAAATAG
1 GTGTTAAATTGAATAAAATAG
82525573 GTGTTAAATTGAATAAAATAG
1 GTGTTAAATTGAATAAAATAG
* *
82525594 GTATTGAATTGA
1 GTGTTAAATTGA
82525606 GTTGAATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.35
Consensus pattern (21 bp):
GTGTTAAATTGAATAAAATAG
Found at i:82529407 original size:47 final size:47
Alignment explanation
Indices: 82529341--82529773 Score: 668
Period size: 47 Copynumber: 9.1 Consensus size: 47
82529331 GAAATGATAG
*
82529341 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82529388 TAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
82529437 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82529484 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82529531 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
82529580 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
82529629 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
82529676 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
82529723 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
82529770 TAAG
1 TAAG
82529774 TCCCGAAGGG
Statistics
Matches: 361, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 219 0.61
49 142 0.39
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:82529509 original size:96 final size:94
Alignment explanation
Indices: 82529344--82529773 Score: 698
Period size: 96 Copynumber: 4.5 Consensus size: 94
82529334 ATGATAGTAA
* *
82529344 GGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
82529409 ATGAATGTGAAAGTGTATATATATGTGATAA
66 ATGAATGTGAAA--GTATATATATGTGATAG
*
82529440 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
82529505 ATGAATGTGAAAGTATATATATGTGATAG
66 ATGAATGTGAAAGTATATATATGTGATAG
*
82529534 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
82529599 TGATGAATGTGAAAGTGTATATATATGTGATAG
64 TGATGAATGTGAAA--GTATATATATGTGATAG
82529632 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
82529697 ATGAATGTGAAAGTATATATATGTGACAG
66 ATGAATGTGAAAGTATATATATGTGATAG
* * * * * *
82529726 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82529774 TCCCGAAGGG
Statistics
Matches: 316, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 107 0.34
96 159 0.50
98 50 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTATATATATGTGATAG
Found at i:82529948 original size:37 final size:37
Alignment explanation
Indices: 82529892--82529970 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82529882 CCGAGCTCTA
* * *
82529892 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
82529929 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
82529966 AAGAC
1 AAGAC
82529971 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:82533305 original size:133 final size:133
Alignment explanation
Indices: 82533156--82533408 Score: 382
Period size: 133 Copynumber: 1.9 Consensus size: 133
82533146 TTATTCATTT
* *
82533156 AAAAAATTCTTAAAAACGAAGGTAAGGTTCGATACTTGGCAATTC-GGAGAATTGTGCCCTATCG
1 AAAAAATTCTTAAAAACGAAGGTAAAGTTCGATACTTGGCAATTCGGGA-AATAGTGCCCTATCG
* *
82533220 TGCTGGGTTGTAATTTCCCGTTTGTTCAAAACAATCGAATGTTCCTTTGGAATTTCTCTCATGTC
65 TGCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTTCTCTCATGTC
82533285 TTAA
130 TTAA
* * * **
82533289 AAAAAATTCTTCAAAACTAAGGTAAAGTTCGGTGTTTGGCAATTCGGGAAATAGTGCCCTATCGT
1 AAAAAATTCTTAAAAACGAAGGTAAAGTTCGATACTTGGCAATTCGGGAAATAGTGCCCTATCGT
* * *
82533354 GCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTGGACTTTC
66 GCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTTC
82533409 ACTCGTGTTT
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
133 104 0.97
134 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (133 bp):
AAAAAATTCTTAAAAACGAAGGTAAAGTTCGATACTTGGCAATTCGGGAAATAGTGCCCTATCGT
GCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTTCTCTCATGTCT
TAA
Found at i:82539230 original size:52 final size:48
Alignment explanation
Indices: 82539168--82539360 Score: 196
Period size: 47 Copynumber: 4.0 Consensus size: 48
82539158 GAAATGTGAT
* *
82539168 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATC-GAG---TGTGATATGTGC
* *
82539220 TTCCGTATAAGACCATATCCGGGATATGGCATCG-GTGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * *
82539267 TACTGTATAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTG-
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * * *
82539313 ATCCGTGTAAGACCATGGCTGGGCTATGGCCTCG-GTATGTGATATGTG
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAG--TGTGATATGTG
82539361 ACTATGTGCA
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
46 26 0.21
47 54 0.44
48 11 0.09
50 1 0.01
51 1 0.01
52 29 0.24
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
Found at i:82539348 original size:93 final size:97
Alignment explanation
Indices: 82539172--82539379 Score: 228
Period size: 93 Copynumber: 2.1 Consensus size: 97
82539162 TGTGATTTCC
* * *
82539172 GTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGCTTCCGTATAAGACCATA
1 GTATAAGACCATAGCTGGGATATGGCATC-GAG--ATGTGATATGTGCATCCGTATAAGACCATA
*
82539237 TCCGGGATATGGCATCGG-TGTGATATGTG-CTACT
63 GCCGGGATATGGCATCGGATGTGATATGTGACTA-T
* * * *
82539271 GTATAAGACCATATCTGGGATATGGCATC-AG-TGTGATATGTG-ATCCGTGTAAGACCATGGCT
1 GTATAAGACCATAGCTGGGATATGGCATCGAGATGTGATATGTGCATCCGTATAAGACCATAGCC
* *
82539333 GGGCTATGGCCTCGGTATGTGATATGTGACTAT
66 GGGATATGGCATCGG-ATGTGATATGTGACTAT
**
82539366 GTGCAAGACCATAG
1 GTATAAGACCATAG
82539380 TTTTACTATG
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
93 28 0.30
94 11 0.12
95 23 0.25
96 3 0.03
97 2 0.02
99 26 0.28
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (97 bp):
GTATAAGACCATAGCTGGGATATGGCATCGAGATGTGATATGTGCATCCGTATAAGACCATAGCC
GGGATATGGCATCGGATGTGATATGTGACTAT
Found at i:82540856 original size:12 final size:12
Alignment explanation
Indices: 82540839--82540879 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
82540829 TTTGAGAATT
82540839 TTAAAATATATA
1 TTAAAATATATA
82540851 TTAAAATATATA
1 TTAAAATATATA
*
82540863 -T-ATATATATA
1 TTAAAATATATA
82540873 TTAAAAT
1 TTAAAAT
82540880 GAAATAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 8 0.32
11 2 0.08
12 15 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TTAAAATATATA
Found at i:82543368 original size:16 final size:16
Alignment explanation
Indices: 82543347--82543378 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
82543337 TAATTTATTA
82543347 AATTAAATAATTTTCT
1 AATTAAATAATTTTCT
82543363 AATTAAATAATTTTCT
1 AATTAAATAATTTTCT
82543379 CAACCCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTAAATAATTTTCT
Found at i:82546440 original size:21 final size:21
Alignment explanation
Indices: 82546416--82546460 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
82546406 TAATATAAAA
82546416 TATTTT-CAAAATAATATTTAT
1 TATTTTACAAAATAAT-TTTAT
* *
82546437 TATTTTATAAAATAATTTTTT
1 TATTTTACAAAATAATTTTAT
82546458 TAT
1 TAT
82546461 AATTTTACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
TATTTTACAAAATAATTTTAT
Found at i:82554834 original size:5 final size:5
Alignment explanation
Indices: 82554824--82554848 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
82554814 AGTATAAATA
82554824 TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT
82554849 ATAATAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:82555843 original size:10 final size:10
Alignment explanation
Indices: 82555828--82555853 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
82555818 TGAAAAGTGA
82555828 ATTGAATTGT
1 ATTGAATTGT
82555838 ATTGAATTGT
1 ATTGAATTGT
82555848 ATTGAA
1 ATTGAA
82555854 ATGAGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (10 bp):
ATTGAATTGT
Found at i:82559484 original size:62 final size:62
Alignment explanation
Indices: 82559418--82559548 Score: 244
Period size: 62 Copynumber: 2.1 Consensus size: 62
82559408 AATGTGTAAG
82559418 ACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTATAAAACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTATAAAACCATGGTTGAAAGAT
* *
82559480 ACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTATAAAACCATGGTTGAAAGAT
82559542 ACCATGG
1 ACCATGG
82559549 CAACCTGATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.24
Consensus pattern (62 bp):
ACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTATAAAACCATGGTTGAAAGAT
Found at i:82559485 original size:16 final size:16
Alignment explanation
Indices: 82559464--82559502 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
82559454 AATGTATAAA
82559464 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
82559480 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
82559496 ACCATGG
1 ACCATGG
82559503 CAACCTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (16 bp):
ACCATGGTTGAAAGAT
Found at i:82559486 original size:46 final size:46
Alignment explanation
Indices: 82559356--82559486 Score: 226
Period size: 46 Copynumber: 2.8 Consensus size: 46
82559346 GTGCTCTCTG
* *
82559356 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTT
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
82559402 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
* *
82559448 ATATGAAATGTATAAAACCATGGTTGAAAGATACCATGG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
82559487 TTGAAAGATA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTA
Found at i:82559530 original size:46 final size:46
Alignment explanation
Indices: 82559480--82559785 Score: 400
Period size: 46 Copynumber: 6.7 Consensus size: 46
82559470 GTTGAAAGAT
* * * **
82559480 ACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAG
* * *
82559526 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT-ATGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA-ATAAG
* *
82559572 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAG
**
82559618 ACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAG
* *
82559664 ACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAG
* *
82559710 ACCATGGATGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAATAAG
* * * *
82559756 ACCATAGTTGAAAGACACTATGGCATCATG
1 ACCATGGTTGAAAGATACCATGGCAACATG
82559786 TCAAAGATAA
Statistics
Matches: 236, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 234 0.99
47 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAG
Found at i:82559561 original size:108 final size:108
Alignment explanation
Indices: 82559372--82559594 Score: 392
Period size: 108 Copynumber: 2.1 Consensus size: 108
82559362 AATGTGTAAG
*
82559372 ACCATGGTTGAAAGATACCATGACAACCTTATATGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGACAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACC
*
82559437 ATGGCAACCTAATATGAAATGTATAAAACCATGGTTGAAAGAT
66 ATGGCAACCTAATATGAAATATATAAAACCATGGTTGAAAGAT
*
82559480 ACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGACAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACC
* * *
82559545 ATGGCAACCTGATATGAAATATGTAAGACCATGGTTGAAAGAT
66 ATGGCAACCTAATATGAAATATATAAAACCATGGTTGAAAGAT
82559588 ACCATGG
1 ACCATGG
82559595 CAACGTGATA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (108 bp):
ACCATGGTTGAAAGATACCATGACAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACC
ATGGCAACCTAATATGAAATATATAAAACCATGGTTGAAAGAT
Found at i:82559636 original size:154 final size:154
Alignment explanation
Indices: 82559356--82559640 Score: 507
Period size: 154 Copynumber: 1.9 Consensus size: 154
82559346 GTGCTCTCTG
* *
82559356 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTTATATGAAATGTGTAAGACC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATATGTAAGACC
*
82559421 ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTATAAAACCATGGTTGAAAGATACCATG
66 ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGAATAAAACCATGGTTGAAAGATACCATG
82559486 GTTGAAAGATACCATGGCAACCTA
131 GTTGAAAGATACCATGGCAACCTA
*
82559510 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATATGTAAGACC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATATGTAAGACC
* * *
82559575 ATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATG
66 ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGAATAAAACCATGGTTGAAAGATACCATG
82559640 G
131 G
82559641 CAACATGACG
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
154 124 1.00
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (154 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATATGTAAGACC
ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGAATAAAACCATGGTTGAAAGATACCATG
GTTGAAAGATACCATGGCAACCTA
Found at i:82560087 original size:16 final size:17
Alignment explanation
Indices: 82560066--82560098 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
82560056 ATGATGGAGC
*
82560066 ATGAAAT-ATTGATATA
1 ATGAAATGATTAATATA
82560082 ATGAAATGATTAATATA
1 ATGAAATGATTAATATA
82560099 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTAATATA
Found at i:82563089 original size:93 final size:93
Alignment explanation
Indices: 82562977--82563147 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
82562967 GCCCCTAAGT
*
82562977 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAGTGAACTCGAACTCAACTCA
82563041 ACGAATTCGGATGCCTAGTTACATTTCAC
65 ACGAATTCGGATGCCTAGTTACATTTCAC
* *
82563070 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
*
82563135 CGAGTTCGGATGC
66 CGAATTCGGATGC
82563148 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
CGAATTCGGATGCCTAGTTACATTTCAC
Found at i:82563144 original size:46 final size:46
Alignment explanation
Indices: 82562972--82563144 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
82562962 AACCCGCCCC
* *
82562972 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACATCCA
* * *
82563018 TAAGTGAACTCGAACTCAACTCAACGAATTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* *
82563066 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
82563111 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82563145 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 4 0.04
46 57 0.54
47 27 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:82565577 original size:15 final size:15
Alignment explanation
Indices: 82565538--82565578 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
82565528 CAAGGAAACT
82565538 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
82565553 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
82565568 GAATAAAGAAA
1 GAATAAAGAAA
82565579 CCTAAGATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.61, C:0.10, G:0.17, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:82601855 original size:31 final size:31
Alignment explanation
Indices: 82601811--82601889 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
82601801 TTTAACGATT
82601811 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* * *
82601842 ATTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
82601873 ACTGGGTCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
82601890 ACTGTAAACG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:82601960 original size:42 final size:42
Alignment explanation
Indices: 82601913--82602004 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
82601903 TGGCCCATAG
* ** *
82601913 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82601955 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82601997 GCCCATTT
1 GCCCATTT
82602005 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:82602194 original size:26 final size:26
Alignment explanation
Indices: 82602149--82602298 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
82602139 CCTCTTTAAT
*
82602149 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
82602174 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
82602200 AACTGGGGCATAAGCCCTTTTCTGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* * *
82602226 AAATAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
82602252 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
82602278 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
82602299 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
25 10 0.09
26 102 0.91
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:82602227 original size:52 final size:52
Alignment explanation
Indices: 82602149--82602298 Score: 266
Period size: 52 Copynumber: 2.9 Consensus size: 52
82602139 CCTCTTTAAT
82602149 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* * *
82602200 AACTGGGGCATAAGCCCTTTTCTGTAAAATAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
82602252 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
82602299 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
51 10 0.11
52 82 0.89
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:82602994 original size:27 final size:27
Alignment explanation
Indices: 82602905--82602988 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
82602895 GGGCATATTC
* *
82602905 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
82602932 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
82602959 ATCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
82602986 GTC
1 GTC
82602989 TTTTTAACTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:82603080 original size:27 final size:27
Alignment explanation
Indices: 82603054--82603595 Score: 182
Period size: 27 Copynumber: 20.0 Consensus size: 27
82603044 ATCTACAAAC
*
82603054 CAAGGGTATTTCAGTAATTTTGTAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
*
82603080 CTAATGGTATTTCTA-TAATTTT-TAGAGAGT
1 C-AAGGGTATTTC-AGTAATTTTATA-A-A-T
* * *
82603110 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** *
82603137 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
** * * * *
82603164 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCAGTAATTTTATAAAT
** *
82603191 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** * *
82603217 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTCAGTAATTTTATAAAT
* *
82603245 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
*** * *
82603272 CAAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
*** *
82603299 CAAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
*** * *
82603326 CAAGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *** * *
82603353 CGAGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *** * * * * *
82603380 CGAGGGTAAAACGGCAATTCTGTAAGT
1 CAAGGGTATTTCAGTAATTTTATAAAT
** ** * * *
82603407 GGAGGGTAAAAT-GGTAATTATGTAAAT
1 CAAGGGT-ATTTCAGTAATTTTATAAAT
* *** * * *
82603434 CGAGGGTAAAACGGTAATTATGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *** * * *
82603461 CGAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* * *
82603488 CAGGGGTACTTT-AGTAATTTTACAAGT
1 CAAGGGTA-TTTCAGTAATTTTATAAAT
*
82603515 CGAA-GGTATTTCAGTAATTTTACAAAT
1 C-AAGGGTATTTCAGTAATTTTATAAAT
* * *
82603542 CGAGGGTATTTCAGTATTTTTACAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
*
82603568 CTAAGGGTATTTCGGTAATTTTAGTAAA
1 C-AAGGGTATTTCAGTAATTTTA-TAAA
82603596 CTAAAGTATT
Statistics
Matches: 435, Mismatches: 63, Indels: 34
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.03
27 392 0.90
28 11 0.03
29 17 0.04
30 3 0.01
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.34
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTATAAAT
Found at i:82603276 original size:81 final size:79
Alignment explanation
Indices: 82603027--82603279 Score: 224
Period size: 81 Copynumber: 3.1 Consensus size: 79
82603017 TTTCATCCTA
* * * * ** ** *
82603027 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACTAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
82603092 CTA-TAATTTTTAGAGAGT
65 -TAGTAATTTTTA-A-A-T
* * *
82603110 CAAGGGTATTTCT-GTAACTTTGTA-AATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAT
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
** ** *
82603173 TTCGGTAATTTCACAAAC
63 TTTAGTAATTT-TTAAAT
*
82603191 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
82603256 TAGTAATTTTGTAAAT
65 TAGTAATTTT-TAAAT
82603272 CAAGGGTA
1 CAAGGGTA
82603280 AAACAGTAAT
Statistics
Matches: 135, Mismatches: 26, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
79 2 0.01
80 7 0.05
81 67 0.50
82 1 0.01
83 51 0.38
84 5 0.04
85 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (79 bp):
CAAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
AGTAATTTTTAAAT
Found at i:82603279 original size:54 final size:54
Alignment explanation
Indices: 82603027--82603279 Score: 213
Period size: 54 Copynumber: 4.6 Consensus size: 54
82603017 TTTCATCCTA
* * * * * * **
82603027 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
* * * * * * ** *
82603081 TAATGGTATTTCTA-TAATTTTTAGAGAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACA-AATCAAGGGTATTTCGGTAATTTTACAAAC
* * ** *
82603137 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
* * *
82603191 CAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTACAAAC
**
82603245 CAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTA
82603280 AAACAGTAAT
Statistics
Matches: 157, Mismatches: 36, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
54 108 0.69
55 13 0.08
56 36 0.23
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAAC
Found at i:82603399 original size:54 final size:54
Alignment explanation
Indices: 82603258--82603495 Score: 332
Period size: 54 Copynumber: 4.4 Consensus size: 54
82603248 GGGTATTTTA
* * * *
82603258 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
82603312 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * * * *
82603366 GTAATTCTATAAATCGAGGGTAAAACGGCAATTCTGTAAGTGGAGGGTAAAATG
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
82603420 GTAATTATGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
82603474 GTAATTCTGTAAATCAGGGGTA
1 GTAATTCTGTAAATCAAGGGTA
82603496 CTTTAGTAAT
Statistics
Matches: 162, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 162 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:82603506 original size:81 final size:81
Alignment explanation
Indices: 82603256--82603495 Score: 311
Period size: 81 Copynumber: 3.0 Consensus size: 81
82603246 AAGGGTATTT
* * * * * *
82603256 TAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTA
1 TAGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
*
82603321 TAAATCAAGGGTAAAA
66 TAAATCAGGGGTAAAA
** * * * *
82603337 CGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGCAATTCTG
1 TAGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
* *
82603402 TAAGT-GGAGGGTAAAA
66 TAAATCAG-GGGTAAAA
* *
82603418 TGGTAATTATGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTG
1 TAGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
82603483 TAAATCAGGGGTA
66 TAAATCAGGGGTA
82603496 CTTTAGTAAT
Statistics
Matches: 135, Mismatches: 22, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
81 134 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (81 bp):
TAGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
TAAATCAGGGGTAAAA
Found at i:82606135 original size:41 final size:43
Alignment explanation
Indices: 82606085--82606177 Score: 109
Period size: 41 Copynumber: 2.2 Consensus size: 43
82606075 TTGATGTCAT
*
82606085 TGTCCCAGACAGGGTCATACAC-TAATCAAATAT-GATGCCGA
1 TGTCCCAGACAGGGTCATACACGTAACCAAATATCGATGCCGA
* * * * *
82606126 TGTCTCAGACATGGTCTTACTCGTAACCAAATATCGATGCCAA
1 TGTCCCAGACAGGGTCATACACGTAACCAAATATCGATGCCGA
*
82606169 CGTCCCAGA
1 TGTCCCAGA
82606178 TGTGGTCTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 18 0.43
42 10 0.24
43 14 0.33
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
TGTCCCAGACAGGGTCATACACGTAACCAAATATCGATGCCGA
Found at i:82617198 original size:46 final size:46
Alignment explanation
Indices: 82617148--82617323 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82617138 TGATTGAGCA
82617148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
82617194 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82617239 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82617287 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82617324 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82617304 original size:93 final size:93
Alignment explanation
Indices: 82617145--82617315 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82617135 GGATGATTGA
* *
82617145 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82617210 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
82617238 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82617303 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82617316 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82624789 original size:46 final size:46
Alignment explanation
Indices: 82624739--82624914 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82624729 TGGTTGAGCA
82624739 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
82624785 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82624830 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82624878 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82624915 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82624895 original size:93 final size:93
Alignment explanation
Indices: 82624736--82624906 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82624726 GGATGGTTGA
* *
82624736 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82624801 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
82624829 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82624894 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82624907 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82627805 original size:45 final size:45
Alignment explanation
Indices: 82627711--82627875 Score: 210
Period size: 44 Copynumber: 3.7 Consensus size: 45
82627701 CGATGTCGAT
* * * * *
82627711 GTCCCAGACATGGTCTTACTCGTAACCACATAT-T-GATGCCAAC
1 GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
82627754 GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
1 GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
* *
82627799 GTCCCAAACGTGGTCTTACATGAAAA-AAATATATCGATGCCAAC
1 GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
* * * *
82627843 CTTCCAGACGTGGTCTTTCACGAAAACACATAT
1 GTCCCAAACGTGGTCTTACACGAAAACACATAT
82627876 CAGAATCCTA
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
43 28 0.26
44 39 0.37
45 39 0.37
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (45 bp):
GTCCCAAACGTGGTCTTACACGAAAACACATATATCGATGCCAAC
Found at i:82627854 original size:44 final size:45
Alignment explanation
Indices: 82627740--82627875 Score: 193
Period size: 45 Copynumber: 3.0 Consensus size: 45
82627730 TCGTAACCAC
* *
82627740 ATATTGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACAAAT
*
82627785 ATATCGATGCCAACGTCCCAAACGTGGTCTTACATGAAAA-AAAT
1 ATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACAAAT
* * * * *
82627829 ATATCGATGCCAACCTTCCAGACGTGGTCTTTCACGAAAACACAT
1 ATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACAAAT
82627874 AT
1 AT
82627876 CAGAATCCTA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
44 38 0.47
45 43 0.53
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (45 bp):
ATATCGATGCCAACGTCCCAAACGTGGTCTTACACGAAAACAAAT
Found at i:82632509 original size:37 final size:37
Alignment explanation
Indices: 82632456--82632558 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
82632446 CGAATAGTCC
* *
82632456 CCACACGTAGTTATCGGGTCTTACCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
82632493 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
82632530 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
82632559 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:82632758 original size:48 final size:48
Alignment explanation
Indices: 82632699--82632875 Score: 273
Period size: 48 Copynumber: 3.6 Consensus size: 48
82632689 ATATACACAA
* * *
82632699 ATCTCCTACATATTTCACACTAGCCGTTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82632747 ATCTCAGACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82632795 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
82632845 ATCTCATATATATTTCACATTAGCCATTCGG
1 ATCTCATACATATTTCACACTAGCCATTCGG
82632876 TAAAACAAAT
Statistics
Matches: 120, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
48 74 0.62
50 46 0.38
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:82632910 original size:76 final size:76
Alignment explanation
Indices: 82632808--82632951 Score: 270
Period size: 76 Copynumber: 1.9 Consensus size: 76
82632798 TCATATATAT
82632808 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
1 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
82632873 CGGTAAAACAA
66 CGGTAAAACAA
* *
82632884 ATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATATATATTTCACATTAGCCATT
1 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
82632949 CGG
66 CGG
82632952 CTTTACCACA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 66 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.35
Consensus pattern (76 bp):
ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
CGGTAAAACAA
Found at i:82632955 original size:48 final size:48
Alignment explanation
Indices: 82632884--82633378 Score: 922
Period size: 48 Copynumber: 10.4 Consensus size: 48
82632874 GGTAAAACAA
* *
82632884 ATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82632932 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82632980 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82633028 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82633076 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82633124 A-TTCACATTAGCCATTC-GCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82633170 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAAACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82633218 ATTCCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82633266 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82633314 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
82633362 ATTCCACATTAGCCATT
1 ATTTCACATTAGCCATT
82633379 TTTGTACAAA
Statistics
Matches: 438, Mismatches: 7, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
46 30 0.07
47 32 0.07
48 376 0.86
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
Found at i:82632969 original size:124 final size:125
Alignment explanation
Indices: 82632758--82632999 Score: 441
Period size: 124 Copynumber: 1.9 Consensus size: 125
82632748 TCTCAGACAT
82632758 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACACTAGCCA
1 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATATTTCACACTAGCCA
82632823 TTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGTAAAACAA
65 TTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGTAAAACAA
* * *
82632884 ATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTC-ATATATATTTCACATTAGCCAT
1 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTCACACTAGCCAT
82632948 TCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGG
66 TCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGG
82633000 CTTTACCACA
Statistics
Matches: 113, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
124 73 0.65
126 40 0.35
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (125 bp):
ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTCACACTAGCCAT
TCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGTAAAACAA
Found at i:82633321 original size:238 final size:239
Alignment explanation
Indices: 82632886--82633378 Score: 925
Period size: 238 Copynumber: 2.1 Consensus size: 239
82632876 TAAAACAAAT
* *
82632886 TTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
* * *
82632951 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCTCAAACATATTCCACATTAGCCATTCGGCTTTACCACATATACA
82633016 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
131 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
82633081 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
196 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
82633125 TTCACATTAGCCATTC-GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
82633189 GCTTTACCACATATACATATCTCAAACATATTCCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCTCAAACATATTCCACATTAGCCATTCGGCTTTACCACATATACA
82633254 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
131 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
82633319 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
196 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
82633363 TTCCACATTAGCCATT
1 TT-CACATTAGCCATT
82633379 TTTGTACAAA
Statistics
Matches: 248, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
238 219 0.88
239 29 0.12
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (239 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCAAACATATTCCACATTAGCCATTCGGCTTTACCACATATACA
TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
Found at i:82638345 original size:22 final size:22
Alignment explanation
Indices: 82638291--82638347 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
82638281 TTTTAACTGA
*
82638291 ATAACAAAATAAAAATAAAAAC
1 ATAACAAAATAATAATAAAAAC
* **
82638313 ATATA-ATAATAATAATAAACCC
1 ATA-ACAAAATAATAATAAAAAC
82638335 ATAACAAAATAAT
1 ATAACAAAATAAT
82638348 TATTTAACCT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.21
Consensus pattern (22 bp):
ATAACAAAATAATAATAAAAAC
Found at i:82641953 original size:46 final size:45
Alignment explanation
Indices: 82641900--82642165 Score: 175
Period size: 46 Copynumber: 5.8 Consensus size: 45
82641890 TTGGGCATCT
*
82641900 GAACTCATTGAGTTGAGTCCGAATTCACTTATGGATGCGAATGTCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
* * * *
82641946 GAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATTC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCC
* * * * *
82641993 GAGCTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
* * *** *
82642039 GAACTCGTTGAGTTGAGTCTGAGTT-AGGGA--GATGTAACTAGGAATCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCC
* * * *
82642086 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
* *
82642132 GAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
82642166 GCGGGTTACA
Statistics
Matches: 169, Mismatches: 33, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
42 4 0.02
43 9 0.05
45 6 0.04
46 82 0.49
47 50 0.30
48 6 0.04
50 8 0.05
51 4 0.02
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (45 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCC
Found at i:82642010 original size:93 final size:93
Alignment explanation
Indices: 82641909--82642158 Score: 383
Period size: 93 Copynumber: 2.7 Consensus size: 93
82641899 TGAACTCATT
* * *
82641909 GAGTTGAGTCCGAATTCACTTATGGATGCGAATGTCCGAACTCATTGAGTTGAGTCCGAGTTCGT
1 GAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTCGG
* *
82641974 GAGATGTAACTAGGCATTCGAGCTCGTC
66 GAGATGTAACTAGGAATCCGAGCTCGTC
* * * *
82642002 GAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTGAGTCTGAGTTAGG
1 GAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTCGG
*
82642067 GAGATGTAACTAGGAATCCGAGCTCGTT
66 GAGATGTAACTAGGAATCCGAGCTCGTC
* * *
82642095 GAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCATTGAGTTGAGTCCGAGTTCG
1 GAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTCG
82642159 CTTATGGGCG
Statistics
Matches: 140, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 140 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (93 bp):
GAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCGAGTTCGG
GAGATGTAACTAGGAATCCGAGCTCGTC
Found at i:82642013 original size:47 final size:47
Alignment explanation
Indices: 82641953--82642111 Score: 148
Period size: 47 Copynumber: 3.4 Consensus size: 47
82641943 TCCGAACTCA
82641953 TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATTCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATTCGAGCTCG
* * * * * *
82642000 TCGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--GTC--T-GAACTCG
1 TTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATTCGAGCTCG
* * * * *
82642046 TTGAGTTGAGTCTGAGTTAGGGAGATGTAACTAGGAATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATTCGAGCTCG
82642093 TTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTC
82642112 ACTTATGGAT
Statistics
Matches: 84, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
42 3 0.04
43 4 0.05
44 1 0.01
45 1 0.01
46 22 0.26
47 42 0.50
48 2 0.02
49 2 0.02
50 4 0.05
51 3 0.04
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (47 bp):
TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATTCGAGCTCG
Found at i:82652256 original size:32 final size:32
Alignment explanation
Indices: 82652215--82652278 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
82652205 GCCCAAAGAT
82652215 GAATGGGGCAGTGGAAGCTGCTAACAAAAACA
1 GAATGGGGCAGTGGAAGCTGCTAACAAAAACA
82652247 GAATGGGGCAGTGGAAGCTGCTAACAAAAACA
1 GAATGGGGCAGTGGAAGCTGCTAACAAAAACA
82652279 TCAAGAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.16, G:0.31, T:0.12
Consensus pattern (32 bp):
GAATGGGGCAGTGGAAGCTGCTAACAAAAACA
Found at i:82654234 original size:78 final size:78
Alignment explanation
Indices: 82654131--82654544 Score: 659
Period size: 78 Copynumber: 5.3 Consensus size: 78
82654121 ATTCTATGAA
* * *
82654131 GAGCAGATCGAAGACATAGCAGATCTAACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
82654196 TGTATTAGACGGG
66 TGTATTAGACGGG
* *
82654209 GAGTAGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
*
82654274 TGTATTAGACAGG
66 TGTATTAGACGGG
* *
82654287 GAGCAGATCGAAGACATAACAGATCTGACTTTCATTGAAGCAGATCCAAGATGATTTGGCATCTT
1 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
82654352 TGTATTAGACGGG
66 TGTATTAGACGGG
* * * *
82654365 GGGCAGATCGAAGACATAACAGATCTGGCTTTCATTGAAGAAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
82654430 TGTATTAGACGGG
66 TGTATTAGACGGG
* * *
82654443 GAGCAGATCGAAGACATAACAAAT-TGGACCTTTATTGAAGCAGATCTAAGATGATTTGGCATCT
1 GAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCT
82654507 CTGTATTAGACGGG
65 CTGTATTAGACGGG
* *
82654521 GAGCAGAACGAAGACATAGCAGAT
1 GAGCAGATCGAAGACATAACAGAT
82654545 TTGGCTTTCA
Statistics
Matches: 310, Mismatches: 25, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
77 1 0.00
78 309 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (78 bp):
GAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
TGTATTAGACGGG
Found at i:82654788 original size:442 final size:442
Alignment explanation
Indices: 82654183--82655335 Score: 1864
Period size: 442 Copynumber: 2.6 Consensus size: 442
82654173 GATCCAAGAT
** * * * * *
82654183 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
82654248 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
* * *
82654313 GACTTTCATTGAAGCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGGGCAGATCGAAG
131 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
*
82654378 ACATAACAGATCTGGCTTTCATTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
196 ACATAACAGATCTGGCCTTCATTGAA-AAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
* *
82654443 GAGCAGATCGAAGACATAACAAATTGGACCTTTATTGAAGCAGATCTAAGATGATTTGGCATCTC
260 GAGCAGATCGAAGACATAACAAATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
82654508 TGTATTAGACGGGGAGCAGAA-CGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGC
325 TGTATTAGACGGGGAGCA-AATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGC
82654572 AGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAA-AAATCGAAGAAACA
389 AGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACA
* * *
82654625 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATGGCAGATCTGACCTTCATCGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
82654690 GCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAGGAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
82654755 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
131 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
* * * ** * *
82654820 ACGTAGCAGATTTAACCTTCATTGACACAA-ATCAAAGATGATTTGGCATCTCTGTATTAGACAG
196 ACATAACAGATCTGGCCTTCATTGA-A-AAGATCCAAGATGATTTGGCATCTCTGTATTAGACGG
*
82654884 GGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCT
259 GGAGCAGATCGAAGACATAACAAATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCT
*
82654949 CTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCATGTGTTTACGCTGAAGC
324 CTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGC
*
82655014 AGATCTAAGATGATTTGGCGTCTCTGTACTGTCAGAGAACAAATCGAAGAAACA
389 AGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACA
*
82655068 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* *
82655133 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
* * * *
82655198 GACCTTCATTGGATCAGATCCAAGATGATTTGGCATCTCTATATTAGACGAGGAGCAGATCGAAG
131 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
*
82655263 ACATAACA-AACTGGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACGG
196 ACATAACAGATCTGG-CCTTCATTGAAA-AGATCCAAGATGATTTGGCATCTCTGTATTAGACGG
82655327 GGAGCAGAT
259 GGAGCAGAT
82655336 AAAAAACATA
Statistics
Matches: 651, Mismatches: 54, Indels: 11
0.91 0.08 0.02
Matches are distributed among these distances:
441 3 0.00
442 392 0.60
443 256 0.39
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (442 bp):
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
ACATAACAGATCTGGCCTTCATTGAAAAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
AGCAGATCGAAGACATAACAAATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCT
GTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAG
ATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACA
Found at i:82654997 original size:78 final size:78
Alignment explanation
Indices: 82654625--82654989 Score: 525
Period size: 78 Copynumber: 4.7 Consensus size: 78
82654615 CGAAGAAACA
** * * * * * *
82654625 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATGGCAGATCTGACCTTCATCGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
82654690 GCAAATCCAAGAT
66 GCAAATCCAAGAT
* * * *
82654703 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAGGAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
*
82654768 GCAGATCCAAGAT
66 GCAAATCCAAGAT
* *
82654781 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACGTAGCAGATTTAACCTTCATTGAC
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGA-
*
82654846 A-CAAATCAAAGAT
65 AGCAAATCCAAGAT
* * *
82654859 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
*
82654924 GCAGATCCAAGAT
66 GCAAATCCAAGAT
*
82654937 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATTTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTG
82654990 GCTTTCATGT
Statistics
Matches: 255, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
77 1 0.00
78 253 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
GCAAATCCAAGAT
Found at i:82655172 original size:78 final size:78
Alignment explanation
Indices: 82655068--82655362 Score: 414
Period size: 78 Copynumber: 3.8 Consensus size: 78
82655058 CGAAGAAACA
* *
82655068 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
*
82655133 GCAGATCCAAGAT
66 ACAGATCCAAGAT
* * * * *
82655146 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTTGACCTTCATTGGA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
*
82655211 TCAGATCCAAGAT
66 ACAGATCCAAGAT
* * *
82655224 GATTTGGCATCTCTATATTAGAC-GAGGAGCAGATCGAAGACATAACA-AACTGGACCTTCATTG
1 GATTTGGCATCTCTATATTAGACGGA-GAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTG
82655287 AAACAGATCCAAGAT
64 AAACAGATCCAAGAT
* * * *
82655302 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATAAAAAACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
82655363 GTGTTTACAT
Statistics
Matches: 191, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
77 4 0.02
78 183 0.96
79 4 0.02
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
ACAGATCCAAGAT
Found at i:82655380 original size:365 final size:369
Alignment explanation
Indices: 82654703--82655472 Score: 1113
Period size: 365 Copynumber: 2.1 Consensus size: 369
82654693 AATCCAAGAT
** * *
82654703 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAGGAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAA
* **
82654768 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACGTAGCAGATTT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
*
82654833 AACCTTCATTGACACAAATCAAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAG
131 AACCTTCATTGACACAAATCAAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAG
* * *
82654898 ACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
196 ACATAACAAACTGGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
** * * * * *
82654963 GAGCAAATCGAAGACATAGCAGATTTGGCTTTCATGTGTTTACGCTGAAGCAGATCTAA-GA-TG
261 GAGCAAATAAAAAACATAGCAGATCTGACCTTCATGTGTTTACGCTGAAGCAGATCTAACGACAG
* *
82655026 ATTTGGCGTCTCTGTACT-GTCAGAGAACAAATCGAAGA-AACA
326 ATTTGGCATCTCTGTACTAGACAGAGAACAAATCGAAGATAACA
* *
82655068 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAA
82655133 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
* * * *
82655198 GACCTTCATTGGA-TCAGATCCAAGATGATTTGGCATCTCTATATTAGAC-GAGGAGCAGATCGA
131 AACCTTCATT-GACACAAATCAAAGATGATTTGGCATCTCTATATTAGACAG-GGAGCAGATCGA
82655261 AGACATAACAAACTGGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACG
194 AGACATAACAAACTGGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACG
* *
82655326 GGGAGCAGATAAAAAACATAGCAGATCTGACCTTCATGTGTTTAC-ATCGAAGCAGATCTAAGCT
259 GGGAGCAAATAAAAAACATAGCAGATCTGACCTTCATGTGTTTACGCT-GAAGCAGATCTAA-C-
* * * * *
82655390 GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
321 GACAGATTTGGCATCTCTGTACTAGACAGAGAACAAATCGAAGATAACA
** * *
82655439 GATTTGGCATCTCTGTATTAGATGGGGAGCAGAT
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGAT
82655473 TGAAGAAGCA
Statistics
Matches: 358, Mismatches: 38, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
364 2 0.01
365 287 0.80
366 2 0.01
368 2 0.01
369 17 0.05
370 15 0.04
371 33 0.09
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (369 bp):
GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATTT
AACCTTCATTGACACAAATCAAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAG
ACATAACAAACTGGACCTTCATTGAAACAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
GAGCAAATAAAAAACATAGCAGATCTGACCTTCATGTGTTTACGCTGAAGCAGATCTAACGACAG
ATTTGGCATCTCTGTACTAGACAGAGAACAAATCGAAGATAACA
Found at i:82655455 original size:45 final size:45
Alignment explanation
Indices: 82655376--82655575 Score: 249
Period size: 45 Copynumber: 4.5 Consensus size: 45
82655366 TTTACATCGA
* * *
82655376 AGCAGATCTAAGCTGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
82655421 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGATGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * * *
82655466 AGCAGATTGAAGA-AGCAGATTTGGCGTGTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* **
82655510 AGCTGATCGAAGATAACAGATTTGGTGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
82655555 AACAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
82655576 ACCATCTTCC
Statistics
Matches: 132, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
44 38 0.29
45 94 0.71
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:82655524 original size:89 final size:90
Alignment explanation
Indices: 82655392--82655575 Score: 262
Period size: 89 Copynumber: 2.1 Consensus size: 90
82655382 TCTAAGCTGA
*
82655392 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
* * **
82655457 TAGATGGGGAGCAGATTGAAGA-AG
66 TAGACGGGGAACAGATCAAAGATAG
* * ** **
82655481 CAGATTTGGCGTGTCTGTATTAGACGGGGAGCTGATCGAAGATAACAGATTTGGTGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
82655546 TAGACGGGGAACAGATCAAAGATAG
66 TAGACGGGGAACAGATCAAAGATAG
82655571 CAGAT
1 CAGAT
82655576 ACCATCTTCC
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 76 0.92
90 7 0.08
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (90 bp):
CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
TAGACGGGGAACAGATCAAAGATAG
Found at i:82678950 original size:20 final size:20
Alignment explanation
Indices: 82678913--82678950 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
82678903 TTTCTTATAT
*
82678913 TAAAATATTTTTACTTTAAA
1 TAAAATATTATTACTTTAAA
*
82678933 TAAAATATTATTATTTTA
1 TAAAATATTATTACTTTA
82678951 TTTTTATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TAAAATATTATTACTTTAAA
Found at i:82679077 original size:27 final size:27
Alignment explanation
Indices: 82679031--82679085 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
82679021 ACCCGAAACA
* *
82679031 GGTCGCGCCTGTCAGATAGGTGCAACT
1 GGTCGCACCTGACAGATAGGTGCAACT
* *
82679058 GGTCGCACCTGACAGGTAGGTGCCACT
1 GGTCGCACCTGACAGATAGGTGCAACT
82679085 G
1 G
82679086 CCTGCCCCCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.20
Consensus pattern (27 bp):
GGTCGCACCTGACAGATAGGTGCAACT
Found at i:82679270 original size:14 final size:14
Alignment explanation
Indices: 82679237--82679284 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
82679227 GCACCCACCG
*
82679237 GAAGAGAGAAAGAAA
1 GAAGA-AGAAAAAAA
82679252 GAAGAAGAAAAAAA
1 GAAGAAGAAAAAAA
*
82679266 TAAGAAGAAGAAGAAA
1 GAAGAAGAA-AA-AAA
82679282 GAA
1 GAA
82679285 AAAAAAGGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 16 0.57
15 7 0.25
16 5 0.18
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (14 bp):
GAAGAAGAAAAAAA
Found at i:82679519 original size:58 final size:59
Alignment explanation
Indices: 82679455--82679567 Score: 183
Period size: 58 Copynumber: 1.9 Consensus size: 59
82679445 TTGTTTTCTA
* * *
82679455 TAATTATTTTAAAATTAATTTGTTAGTAA-TATGATTATGTTATAAATTGTTGTGTTTG
1 TAATTATTTTAAAACTAATTTATTAGTAATTAGGATTATGTTATAAATTGTTGTGTTTG
82679513 TAATTATTTTAAAACTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGT
1 TAATTATTTTAAAACTAATTTATTAGTAA-TTAGGATTATGTTATAAATTGTTGT
82679568 ATTTAGTTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
58 27 0.54
60 23 0.46
ACGTcount: A:0.35, C:0.01, G:0.12, T:0.52
Consensus pattern (59 bp):
TAATTATTTTAAAACTAATTTATTAGTAATTAGGATTATGTTATAAATTGTTGTGTTTG
Found at i:82680015 original size:106 final size:105
Alignment explanation
Indices: 82679762--82680150 Score: 550
Period size: 102 Copynumber: 3.8 Consensus size: 105
82679752 TTATAGTTAT
* * * *
82679762 TTATTTTGTTAATAATTTATGGGACTAGG-T-TACAAATTGTTAGTGTTTAG-TATAGGGTTTTG
1 TTATTTTGTTAGTAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTG
*
82679824 TGATTTTTTAGTAATGTAATTTTTAAAAA-AATAATTTTATAG
64 TGATTTTTTAGTAAT-TTATTTTTAAAAATAATAATTTTATAG
82679866 TTATTTTGTTAGTAA---ATGATTAGGTTATATAAATTGTTAGTGTTTAGTTAT-GTGTTTTGTG
1 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTGTG
82679927 ATTTTTTAGTAATTTATTTTTAAAAAATAATAATTTTATAG
66 ATTTTTTAGTAATTTATTTTT-AAAAATAATAATTTTATAG
* * *
82679968 TTATTTTTTTTAGTAATTTATGATTAGATTATATAAATTGTTTGTGTTTAGTTAT-GTGTTTTGT
1 TTA-TTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTGT
*
82680032 GATTTTTTAGTAATGTA--TTTAAAAATAATAATTTTATAG
65 GATTTTTTAGTAATTTATTTTTAAAAATAATAATTTTATAG
82680071 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTT-TAGTGTTTTGTG
1 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTGTG
*
82680135 ATTTTTAATGTAATTT
66 ATTTTTTA-GTAATTT
82680151 TTATATAATG
Statistics
Matches: 260, Mismatches: 14, Indels: 23
0.88 0.05 0.08
Matches are distributed among these distances:
99 6 0.02
100 8 0.03
101 49 0.19
102 82 0.32
103 39 0.15
104 17 0.07
106 59 0.23
ACGTcount: A:0.30, C:0.01, G:0.16, T:0.54
Consensus pattern (105 bp):
TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTGTG
ATTTTTTAGTAATTTATTTTTAAAAATAATAATTTTATAG
Found at i:82682217 original size:33 final size:33
Alignment explanation
Indices: 82682180--82682271 Score: 105
Period size: 33 Copynumber: 2.8 Consensus size: 33
82682170 TCTCGACTCA
* * *
82682180 TATCCACC-TCAGAACTTCGCTCCTTCCGGCCCG
1 TATCCACCGTCA-AACTCCACTCCTCCCGGCCCG
* *
82682213 TATCCACCGTCATACTCCATTCCTCCCGGCCCG
1 TATCCACCGTCAAACTCCACTCCTCCCGGCCCG
**
82682246 TATCCACCGTCGCACTCCACTCCTCC
1 TATCCACCGTCAAACTCCACTCCTCC
82682272 TAGCTCAATT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
33 47 0.94
34 3 0.06
ACGTcount: A:0.15, C:0.49, G:0.12, T:0.24
Consensus pattern (33 bp):
TATCCACCGTCAAACTCCACTCCTCCCGGCCCG
Found at i:82682614 original size:77 final size:75
Alignment explanation
Indices: 82682461--82682688 Score: 296
Period size: 77 Copynumber: 3.0 Consensus size: 75
82682451 AATAAATTCA
* * * *
82682461 TATTTATGTAATAAATTTTTTACCATTTTAGTTATCAATTTTATGATTTTTTTTGCAATTTAAGT
1 TATTTATGTAATGACTTTTTTACCATTTTA-TTATCAATTTTATGGTTTTTTTTGCAATTTAAAT
*
82682526 AGTCAACTTTG
65 AGTAAACTTTG
*
82682537 TATTTATGTAATGACTTTTTTTTCCATTTTATTATCAATTTTATGGTTTTTTTTTGCAATTTAAA
1 TATTTATGTAATGAC-TTTTTTACCATTTTATTATCAATTTTATGG-TTTTTTTTGCAATTTAAA
*
82682602 TAGTAAAGTTTG
64 TAGTAAACTTTG
* * * *
82682614 TATTTATGTATTGACTTTTTTGCTATTTCAATTATCAATTTTATGG-TTTTTTTGCAATTTAAAT
1 TATTTATGTAATGACTTTTTTACCATTT-TATTATCAATTTTATGGTTTTTTTTGCAATTTAAAT
*
82682678 AAATAAACTTT
65 -AGTAAACTTT
82682689 AAACTAACTT
Statistics
Matches: 135, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
75 18 0.13
76 46 0.34
77 71 0.53
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.55
Consensus pattern (75 bp):
TATTTATGTAATGACTTTTTTACCATTTTATTATCAATTTTATGGTTTTTTTTGCAATTTAAATA
GTAAACTTTG
Found at i:82686549 original size:37 final size:37
Alignment explanation
Indices: 82686508--82686581 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
82686498 TACTGAGTGG
82686508 TCTATTTGCTTATGACTTACTAAGCTATAAAAAGCTT
1 TCTATTTGCTTATGACTTACTAAGCTATAAAAAGCTT
*
82686545 TCTATTTGTTTATGACTTACTAAGCTATAAAAAGCTT
1 TCTATTTGCTTATGACTTACTAAGCTATAAAAAGCTT
82686582 ACTCTGTGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (37 bp):
TCTATTTGCTTATGACTTACTAAGCTATAAAAAGCTT
Found at i:82700327 original size:31 final size:31
Alignment explanation
Indices: 82700289--82700351 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
82700279 GGTTTATAGT
82700289 TCTAAAATTTTTGGTAGTGAACATCTGTCAG
1 TCTAAAATTTTTGGTAGTGAACATCTGTCAG
82700320 TCTAAAATTTTTGGTAGTGAACATCTGTCAG
1 TCTAAAATTTTTGGTAGTGAACATCTGTCAG
82700351 T
1 T
82700352 TTGTTGATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.40
Consensus pattern (31 bp):
TCTAAAATTTTTGGTAGTGAACATCTGTCAG
Found at i:82703768 original size:77 final size:77
Alignment explanation
Indices: 82703634--82703951 Score: 325
Period size: 77 Copynumber: 4.1 Consensus size: 77
82703624 CGATTGGCTG
* * * * * * * * * * *
82703634 ATTTAATATTGCGACCTTCGATTTTTTAACAATTTGTTTGATTTAATATCACAGCTGTTATTTTT
1 ATTTAAGATCGCGACCTTCGATATTCTAACAATTCGCTCGATTTAATATCGCGGCTATCATTTTT
* *
82703699 ATGGTTTGCTCA
66 ATAGTTCGCTCA
* * *
82703711 ATTTAATATCGCGACCTTCGATATTCTAACAATTCGCTTGATTTAATATCGCGGCTGTCATTTTT
1 ATTTAAGATCGCGACCTTCGATATTCTAACAATTCGCTCGATTTAATATCGCGGCTATCATTTTT
* *
82703776 ACAGTTCGCTCG
66 ATAGTTCGCTCA
* * *
82703788 ATTTAAGATCGTGACCTTCGATATTCTAACAGTTCGCTCGATTTAATATCGCGACTATCATTTTT
1 ATTTAAGATCGCGACCTTCGATATTCTAACAATTCGCTCGATTTAATATCGCGGCTATCATTTTT
82703853 ATAGTTCGCTCA
66 ATAGTTCGCTCA
* * * * * * *
82703865 ATATAAGATCACGACATCCAATATTCTAACAATTCGCTCAATTTAATAAT-GTGAG-TATCATTT
1 ATTTAAGATCGCGACCTTCGATATTCTAACAATTCGCTCGATTTAAT-ATCGCG-GCTATCATTT
* * *
82703928 TTATGGTTTGCTCG
64 TTATAGTTCGCTCA
82703942 ATTTAAGATC
1 ATTTAAGATC
82703952 ATGACTTTCG
Statistics
Matches: 205, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
77 203 0.99
78 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (77 bp):
ATTTAAGATCGCGACCTTCGATATTCTAACAATTCGCTCGATTTAATATCGCGGCTATCATTTTT
ATAGTTCGCTCA
Found at i:82703822 original size:40 final size:40
Alignment explanation
Indices: 82703706--82703912 Score: 178
Period size: 40 Copynumber: 5.3 Consensus size: 40
82703696 TTTATGGTTT
* *
82703706 GCTCAATTTAATATCGCGACCTTCGATATTCTAACAATTC
1 GCTCGATTTAATATCGCGACCTTCGATATTCTAACAGTTC
* * *
82703746 GCTTGATTTAATATCGCG-GCTGTC-AT-TT-TTACAGTTC
1 GCTCGATTTAATATCGCGACCT-TCGATATTCTAACAGTTC
* *
82703783 GCTCGATTTAAGATCGTGACCTTCGATATTCTAACAGTTC
1 GCTCGATTTAATATCGCGACCTTCGATATTCTAACAGTTC
* *
82703823 GCTCGATTTAATATCGCGA-CTATC-AT-TT-TTATAGTTC
1 GCTCGATTTAATATCGCGACCT-TCGATATTCTAACAGTTC
* * * * * * * *
82703860 GCTCAATATAAGATCACGACATCCAATATTCTAACAATTC
1 GCTCGATTTAATATCGCGACCTTCGATATTCTAACAGTTC
*
82703900 GCTCAATTTAATA
1 GCTCGATTTAATA
82703913 ATGTGAGTAT
Statistics
Matches: 132, Mismatches: 25, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
37 47 0.36
38 11 0.08
39 12 0.09
40 62 0.47
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.37
Consensus pattern (40 bp):
GCTCGATTTAATATCGCGACCTTCGATATTCTAACAGTTC
Found at i:82704023 original size:185 final size:185
Alignment explanation
Indices: 82703793--82704136 Score: 465
Period size: 185 Copynumber: 1.9 Consensus size: 185
82703783 GCTCGATTTA
* * * * *
82703793 AGATCGTGACCTTCGATATTCTAACAGTTCGCTCGATTTAATATCGCGACTATCATTTTTATAGT
1 AGATCGCGACCTTCAATATTCTAACAATTCGCTCGATTAAATATCGCGACTATCATTTTTACAGT
*
82703858 TCGCTCAATATAAGATCACGACATCCAATATTCTAACAATTCGCTCAATTTAATAATGTGAG-TA
66 TCGCTCAATATAAGATCACGACATCCAATATTCTAACAATTCACTCAATTTAATAATGT-AGTTA
* *
82703922 TCATTTTTATGGTTTGCTCGATTTAAGATCATGACTTTCGTAGTTTGTTTGAATTG
130 TCATTTTTACGGTTCGCTCGATTTAAGATCATGACTTTCGTAGTTTGTTTGAATTG
* *
82703978 AGATCGCGACCTTCAATATTCTAACAATTCGCTTGATTAAATATCGCGACTATCATTTTTCCAGT
1 AGATCGCGACCTTCAATATTCTAACAATTCGCTCGATTAAATATCGCGACTATCATTTTTACAGT
* ** * ** * *** * * *
82704043 TTGCTTGATTTAAGATGGCGACCTTTGATATTCTAACAGTTCACTTAATTTAATATTGTAGTTAT
66 TCGCTCAATATAAGATCACGACATCCAATATTCTAACAATTCACTCAATTTAATAATGTAGTTAT
82704108 CATTTTTACGGTTCGCTCGATTTAAGATC
131 CATTTTTACGGTTCGCTCGATTTAAGATC
82704137 GCAACCTTCG
Statistics
Matches: 135, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
184 2 0.01
185 133 0.99
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (185 bp):
AGATCGCGACCTTCAATATTCTAACAATTCGCTCGATTAAATATCGCGACTATCATTTTTACAGT
TCGCTCAATATAAGATCACGACATCCAATATTCTAACAATTCACTCAATTTAATAATGTAGTTAT
CATTTTTACGGTTCGCTCGATTTAAGATCATGACTTTCGTAGTTTGTTTGAATTG
Found at i:82704098 original size:77 final size:77
Alignment explanation
Indices: 82703978--82704398 Score: 404
Period size: 77 Copynumber: 5.5 Consensus size: 77
82703968 GTTTGAATTG
* * * * * *
82703978 AGATCGCGACCTTCAATATTCTAACAATTCGCTTGATTAAATATCGCGACTATCATTTTTCCAGT
1 AGATCGCGACCTTCAATATTCTAACAGTTCACTTGATTTAATATTGCGATTATCATTTTTACAGT
* *
82704043 TTGCTTGATTTA
66 TCGCTCGATTTA
* ** * * *
82704055 AGATGGCGACCTTTGATATTCTAACAGTTCACTTAATTTAATATTG-TAGTTATCATTTTTACGG
1 AGATCGCGACCTTCAATATTCTAACAGTTCACTTGATTTAATATTGCGA-TTATCATTTTTACAG
82704119 TTCGCTCGATTTA
65 TTCGCTCGATTTA
* * * * * *
82704132 AGATCGCAACCTTCGATATTCTAACAGTTCACTTGACTTAATATTGTGATTGTCATTTTTACGGT
1 AGATCGCGACCTTCAATATTCTAACAGTTCACTTGATTTAATATTGCGATTATCATTTTTACAGT
*
82704197 TCGCTCGATTTG
66 TCGCTCGATTTA
* ** * * *
82704209 AGATAC-CAACCTTTGATATTCTAATAGTTCACTTGATTTAATATTGCTATTGTCATTTTTAC-G
1 AGAT-CGCGACCTTCAATATTCTAACAGTTCACTTGATTTAATATTGCGATTATCATTTTTACAG
*
82704272 CTTCACTCGATTTA
65 -TTCGCTCGATTTA
* * * * * * *
82704286 AGATCGCGACCATCAATTTTCTAACGGTTCGCTTGATTTAATATCGTGA-CAGTCATTTTTACAG
1 AGATCGCGACCTTCAATATTCTAACAGTTCACTTGATTTAATATTGCGATTA-TCATTTTTACAG
*
82704350 TCCGCT-GATTTA
65 TTCGCTCGATTTA
* * * *
82704362 ATATCCCGACTTTCAATTTTCTAACAGTTCAC-TGATT
1 AGATCGCGACCTTCAATATTCTAACAGTTCACTTGATT
82704399 CACGATCATG
Statistics
Matches: 287, Mismatches: 50, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
75 5 0.02
76 35 0.12
77 244 0.85
78 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (77 bp):
AGATCGCGACCTTCAATATTCTAACAGTTCACTTGATTTAATATTGCGATTATCATTTTTACAGT
TCGCTCGATTTA
Found at i:82704190 original size:262 final size:262
Alignment explanation
Indices: 82703718--82704212 Score: 650
Period size: 262 Copynumber: 1.9 Consensus size: 262
82703708 TCAATTTAAT
* * * *
82703718 ATCGCGACCTTCGATATTCTAACAATTCGCTTGATTTAATATCGCGGCTGTCATTTTTACAGTTC
1 ATCGCGACCTTCAATATTCTAACAATTCGCTTGATTAAATATCGCGACTATCATTTTTACAGTTC
* * * *
82703783 GCTCGATTTAAGATCGTGACCTTCGATATTCTAACAGTTCGCTCGATTTAATATCGCGACTATCA
66 GCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCACTCAATTTAATATCGAGACTATCA
* * * *
82703848 TTTTTATAGTTCGCTCAATATAAGATCACGACATCCAATATTCTAACAATTCGCTCAATTTAATA
131 TTTTTACAGTTCGCTCAATATAAGATCACAACATCCAATATTCTAACAATTCACTCAACTTAATA
* *
82703913 ATGTGAGTATCATTTTTATGGTTTGCTCGATTTAAGATCATGACTTTCGTAGTTTGTTTGAATTG
196 ATGTGAGTATCATTTTTACGGTTCGCTCGATTTAAGATCATGACTTTCGTAGTTTGTTTGAATTG
82703978 AG
261 AG
* *
82703980 ATCGCGACCTTCAATATTCTAACAATTCGCTTGATTAAATATCGCGACTATCATTTTTCCAGTTT
1 ATCGCGACCTTCAATATTCTAACAATTCGCTTGATTAAATATCGCGACTATCATTTTTACAGTTC
* * * * * *
82704045 GCTTGATTTAAGATGGCGACCTTTGATATTCTAACAGTTCACTTAATTTAATATTGTAG-TTATC
66 GCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCACTCAATTTAATATCG-AGACTATC
* * * * * * * * **
82704109 ATTTTTACGGTTCGCTCGATTTAAGATCGCAACCTTCGATATTCTAACAGTTCACTTGACTTAAT
130 ATTTTTACAGTTCGCTCAATATAAGATCACAACATCCAATATTCTAACAATTCACTCAACTTAAT
* * * *
82704174 ATTGTGATTGTCATTTTTACGGTTCGCTCGATTTGAGAT
195 AATGTGAGTATCATTTTTACGGTTCGCTCGATTTAAGAT
82704213 ACCAACCTTT
Statistics
Matches: 196, Mismatches: 36, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
262 195 0.99
263 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (262 bp):
ATCGCGACCTTCAATATTCTAACAATTCGCTTGATTAAATATCGCGACTATCATTTTTACAGTTC
GCTCGATTTAAGATCGCGACCTTCGATATTCTAACAGTTCACTCAATTTAATATCGAGACTATCA
TTTTTACAGTTCGCTCAATATAAGATCACAACATCCAATATTCTAACAATTCACTCAACTTAATA
ATGTGAGTATCATTTTTACGGTTCGCTCGATTTAAGATCATGACTTTCGTAGTTTGTTTGAATTG
AG
Found at i:82704265 original size:154 final size:152
Alignment explanation
Indices: 82703978--82704394 Score: 487
Period size: 154 Copynumber: 2.7 Consensus size: 152
82703968 GTTTGAATTG
* * * *
82703978 AGATCGCGACCTTCAATATTCTAACAATTCGCTTGATTAAATATCGCGACTATCATTTTTCCAGT
1 AGATCGCGACCTTCAATATTCTAACAGTTCGCTTGATT-AATATCGTGACTGTCATTTTTACAGT
* ** *
82704043 TTGCTTGATTTAAGATGGCGACCTTTGATATTCTAACAGTTCACTTAATTTAATATTGTAGTTAT
65 TCGC-TGATTTAAGATACCAACCTTTGATATTCTAACAGTTCACTTAATTTAATATTGTAGTTAT
* *
82704108 CATTTTTACGGTTCGCTCGATTTA
129 CATTTTTACGCTTCACTCGATTTA
* * * * * *
82704132 AGATCGCAACCTTCGATATTCTAACAGTTCACTTGACTTAATATTGTGATTGTCATTTTTACGGT
1 AGATCGCGACCTTCAATATTCTAACAGTTCGCTTGA-TTAATATCGTGACTGTCATTTTTACAGT
* * * *
82704197 TCGCTCGATTTGAGATACCAACCTTTGATATTCTAATAGTTCACTTGATTTAATATTGCTA-TTG
65 TCGCT-GATTTAAGATACCAACCTTTGATATTCTAACAGTTCACTTAATTTAATATTG-TAGTTA
82704261 TCATTTTTACGCTTCACTCGATTTA
128 TCATTTTTACGCTTCACTCGATTTA
* * * *
82704286 AGATCGCGACCATCAATTTTCTAACGGTTCGCTTGATTTAATATCGTGACAGTCATTTTTACAGT
1 AGATCGCGACCTTCAATATTCTAACAGTTCGCTTGA-TTAATATCGTGACTGTCATTTTTACAGT
* * * * * *
82704351 CCGCTGATTTAATATCCCGA-CTTTCAATTTTCTAACAGTTCACT
65 TCGCTGATTTAAGATACCAACCTTT-GATATTCTAACAGTTCACT
82704395 GATTCACGAT
Statistics
Matches: 220, Mismatches: 39, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
152 4 0.02
153 28 0.13
154 184 0.84
155 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.41
Consensus pattern (152 bp):
AGATCGCGACCTTCAATATTCTAACAGTTCGCTTGATTAATATCGTGACTGTCATTTTTACAGTT
CGCTGATTTAAGATACCAACCTTTGATATTCTAACAGTTCACTTAATTTAATATTGTAGTTATCA
TTTTTACGCTTCACTCGATTTA
Found at i:82704324 original size:40 final size:39
Alignment explanation
Indices: 82704280--82704398 Score: 120
Period size: 39 Copynumber: 3.1 Consensus size: 39
82704270 CGCTTCACTC
* *
82704280 GATTTAAGATCGCGACCATCAATTTTCTAACGGTTCGCTT
1 GATTTAATATCGCGACCATCAATTTTCTAACAGTTCGC-T
* *
82704320 GATTTAATATCGTGA-CAGTC-ATTTT-T-ACAGTCCGCT
1 GATTTAATATCGCGACCA-TCAATTTTCTAACAGTTCGCT
* ** *
82704356 GATTTAATATCCCGACTTTCAATTTTCTAACAGTTCACT
1 GATTTAATATCGCGACCATCAATTTTCTAACAGTTCGCT
82704395 GATT
1 GATT
82704399 CACGATCATG
Statistics
Matches: 64, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
36 16 0.25
37 12 0.19
38 2 0.03
39 19 0.30
40 15 0.23
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (39 bp):
GATTTAATATCGCGACCATCAATTTTCTAACAGTTCGCT
Found at i:82704968 original size:17 final size:18
Alignment explanation
Indices: 82704946--82704979 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82704936 AGTTGAATTG
82704946 AAATTGC-AAAATTAAAT
1 AAATTGCAAAAATTAAAT
82704963 AAATTGCAAAAATTAAA
1 AAATTGCAAAAATTAAA
82704980 ATAGAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (18 bp):
AAATTGCAAAAATTAAAT
Done.