Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 254 of 356
Found at i:83300839 original size:7 final size:7
Alignment explanation
Indices: 83300712--83300840 Score: 68
Period size: 7 Copynumber: 18.1 Consensus size: 7
83300702 GATGAATTAT
83300712 GGGTTTA
1 GGGTTTA
*
83300719 GGGATTA
1 GGGTTTA
* *
83300726 TGATTTA
1 GGGTTTA
83300733 GGGTTTAA
1 GGGTTT-A
83300741 GGG-TTA
1 GGGTTTA
*
83300747 AGG-TT-
1 GGGTTTA
83300752 GGAGTTTA
1 GG-GTTTA
* *
83300760 AGGTGTAA
1 GGGT-TTA
*
83300768 GGGTTTG
1 GGGTTTA
*
83300775 GGGTTAA
1 GGGTTTA
*
83300782 GGGTTAA
1 GGGTTTA
83300789 GGGTTTA
1 GGGTTTA
83300796 GGGTTTA
1 GGGTTTA
*
83300803 GTGTTTA
1 GGGTTTA
*
83300810 TGGG-ATA
1 -GGGTTTA
*
83300817 GGGGTTAA
1 -GGGTTTA
83300825 GAGGTTTA
1 G-GGTTTA
83300833 GGGTTTA
1 GGGTTTA
83300840 G
1 G
83300841 ATTAATTAGT
Statistics
Matches: 91, Mismatches: 23, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
5 1 0.01
6 6 0.07
7 65 0.71
8 19 0.21
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (7 bp):
GGGTTTA
Found at i:83306685 original size:19 final size:19
Alignment explanation
Indices: 83306663--83306703 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
83306653 TTTATTGATA
83306663 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
83306681 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
83306700 TTTT
1 TTTT
83306704 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:83312873 original size:29 final size:29
Alignment explanation
Indices: 83312831--83312917 Score: 147
Period size: 29 Copynumber: 3.0 Consensus size: 29
83312821 AGCATAAGAA
* *
83312831 TTTATAGCCAGAACCGCATAATATTTTTT
1 TTTATAGCCAGAACCACATAATATTTTTC
*
83312860 TTTATAGCCAGAACCACAAAATATTTTTC
1 TTTATAGCCAGAACCACATAATATTTTTC
83312889 TTTATAGCCAGAACCACATAATATTTTTC
1 TTTATAGCCAGAACCACATAATATTTTTC
83312918 ATTCTCAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (29 bp):
TTTATAGCCAGAACCACATAATATTTTTC
Found at i:83314480 original size:11 final size:12
Alignment explanation
Indices: 83314452--83314484 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
83314442 TGAAGCCGTT
*
83314452 CAAAAATAAATA
1 CAAAAATAAACA
83314464 CAAAAATAAACA
1 CAAAAATAAACA
83314476 C-AAAATAAA
1 CAAAAATAAA
83314485 GATATAGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (12 bp):
CAAAAATAAACA
Found at i:83319582 original size:26 final size:26
Alignment explanation
Indices: 83319552--83319606 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
83319542 AACCTTAACA
83319552 AGACCTTCTCTTGGTCGGCCACCTTG
1 AGACCTTCTCTTGGTCGGCCACCTTG
*
83319578 AGACCTTCTCTTGGTCGGCCACTTTG
1 AGACCTTCTCTTGGTCGGCCACCTTG
83319604 AGA
1 AGA
83319607 AACCCTTAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.15, C:0.31, G:0.24, T:0.31
Consensus pattern (26 bp):
AGACCTTCTCTTGGTCGGCCACCTTG
Found at i:83327025 original size:49 final size:49
Alignment explanation
Indices: 83326961--83327156 Score: 250
Period size: 50 Copynumber: 3.9 Consensus size: 49
83326951 TAGCCAAAGC
* * *
83326961 TATCTGGTACGCGTAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
83327010 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC-AAT
* * * *
83327060 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* *
83327111 TATCGGGTACA-GATAGTAGCTTGCACTTAGTACTACACATGTGACC
1 TATCTGGTACACG-TAGTAGCCTGCACTTAGTACTACACATGTGACC
83327157 TCACAATAGA
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
49 42 0.33
50 46 0.37
51 38 0.30
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:83327145 original size:101 final size:99
Alignment explanation
Indices: 83326962--83327157 Score: 286
Period size: 101 Copynumber: 2.0 Consensus size: 99
83326952 AGCCAAAGCT
* * *
83326962 ATCTGGTACGCGTAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACGTAGT
83327027 AGCCTGCACTTAGTACTACACATGTGACCTAACC
66 AGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * *
83327061 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACA-GAT
1 ATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCCGGTACACG-T
*
83327125 AGTAGCTTGCACTTAGTACTACACATGTGACCT
63 AGTAGCCTGCACTTAGTACTACACATGTGACCT
83327158 CACAATAGAT
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
99 38 0.44
100 4 0.05
101 44 0.51
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (99 bp):
ATCTGATACACGTAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACGTAGT
AGCCTGCACTTAGTACTACACATGTGACCTAACC
Found at i:83333207 original size:43 final size:43
Alignment explanation
Indices: 83333139--83333307 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 43
83333129 TAAGCTCGTA
* * * *
83333139 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
* * * *
83333181 CAATGCCACTGTCCCAGACA-GTGTCTTACACGAAATCATATAA
1 CAATGCCAATGTCCCAGACATG-GTCTTACACGTAATCACATAT
* * * **
83333224 CGATTCCAATGTTCCAGACATCATCTTACACGTAATCACA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
* *
83333266 ACAATGCCAATGTCCCAGACATGGTCTAACATGTAATCACAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
83333308 CTCGATAACC
Statistics
Matches: 98, Mismatches: 24, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
42 9 0.09
43 89 0.91
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
Found at i:83338776 original size:47 final size:47
Alignment explanation
Indices: 83338716--83338834 Score: 193
Period size: 47 Copynumber: 2.5 Consensus size: 47
83338706 ACTTTGGCAC
*
83338716 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACACGGCATTTGG
* * *
83338763 TAAGACAATGATACCATGTAAGACAATGTTTGGAACACGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACACGGCATTTGG
*
83338810 TAAGATAAGGATATCATGTAAGACC
1 TAAGATAAGGATACCATGTAAGACC
83338835 GTGCCAAGGC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACACGGCATTTGG
Found at i:83338944 original size:55 final size:54
Alignment explanation
Indices: 83338816--83339012 Score: 236
Period size: 55 Copynumber: 3.6 Consensus size: 54
83338806 TTGGTAAGAT
* * * * *
83338816 AAGGATATCATGTAAGACCGTGCCAAGGCATGGCATTGATAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
83338870 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* *
83338925 AAAGG-TCCCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
83338978 AAGGATACCACGTAAGACCATGTCAAAACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
83339013 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 41 0.33
55 42 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:83339626 original size:19 final size:19
Alignment explanation
Indices: 83339602--83339639 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
83339592 GGGACTTAGC
83339602 CATTTTGTGTGTATGTCCT
1 CATTTTGTGTGTATGTCCT
83339621 CATTTTGTGTGTATGTCCT
1 CATTTTGTGTGTATGTCCT
83339640 TATGATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.16, G:0.21, T:0.53
Consensus pattern (19 bp):
CATTTTGTGTGTATGTCCT
Found at i:83340883 original size:46 final size:46
Alignment explanation
Indices: 83340828--83340923 Score: 147
Period size: 46 Copynumber: 2.1 Consensus size: 46
83340818 TATTATGAGA
* *
83340828 TATTTGAATTTTTGTGAGATAGAATCAAAATGATTTCGGAATCCCT
1 TATTTGAATTTTTGTGAGACAGAATCAAAATGATTTCAGAATCCCT
* * *
83340874 TATTTGAATTTTTGTGAGACAGAGTCAGAATGATTTTAGAATCCCT
1 TATTTGAATTTTTGTGAGACAGAATCAAAATGATTTCAGAATCCCT
83340920 TATT
1 TATT
83340924 CTGATTTGGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (46 bp):
TATTTGAATTTTTGTGAGACAGAATCAAAATGATTTCAGAATCCCT
Found at i:83343579 original size:27 final size:27
Alignment explanation
Indices: 83343548--83343942 Score: 364
Period size: 27 Copynumber: 14.7 Consensus size: 27
83343538 CCTTGACTTG
***
83343548 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* *
83343575 CAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
*
83343602 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* ***
83343629 TAGAATTATTGTTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* *
83343656 CAAAATTACCATTTTACCCTCAATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
**
83343683 TAAAATTACCATTTTATACTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * *
83343710 TAGAATTACCGTTTCT-TCCTCGATTTA
1 TAAAATTACCATTT-TACCCTCGATTTA
* * * *
83343737 CAAAATTATCATTTTACCTTTGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * **
83343764 CAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * *
83343791 CAGAATTA-CAGTTTTACCCTCAATTTA
1 TAAAATTACCA-TTTTACCCTCGATTTA
*
83343818 TAAAATTACCGTTTTACCC-CGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* **
83343844 TAGAATTACCATTTTACCCTTAATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* **
83343871 TAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * * *
83343898 CAGAATTATCGTTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * **
83343925 CAGAATTACTGTTTTACC
1 TAAAATTACCATTTTACC
83343943 TTAATTTTGA
Statistics
Matches: 306, Mismatches: 57, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
26 24 0.08
27 280 0.92
28 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TAAAATTACCATTTTACCCTCGATTTA
Found at i:83343609 original size:54 final size:54
Alignment explanation
Indices: 83343562--83343942 Score: 415
Period size: 54 Copynumber: 7.1 Consensus size: 54
83343552 ATTACCAAAG
*
83343562 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
* ** * *
83343616 TACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
* * * * ** *
83343670 TACCCTCAATTTATAAAATTACCATTTTATACTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
* * * * * * * **
83343724 CT-TCCTCGATTTACAAAATTATCATTTTACCTTTGATTTACAGAATTACTGTTT
1 -TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
* * * *
83343778 TACCCTCGATTTACAGAATTACAGTTTTACCCTCAATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
* * ** **
83343832 TACCC-CGATTTATAGAATTACCATTTTACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
* * **
83343885 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
83343939 TACC
1 TACC
83343943 TTAATTTTGA
Statistics
Matches: 275, Mismatches: 49, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
53 48 0.17
54 226 0.82
55 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
Found at i:83343660 original size:81 final size:81
Alignment explanation
Indices: 83343562--83343942 Score: 505
Period size: 81 Copynumber: 4.7 Consensus size: 81
83343552 ATTACCAAAG
83343562 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
*
83343627 TATAGAATTATTGTTT
66 TATAGAATTACTGTTT
* * * **
83343643 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAAAATTACCATTTTATACTCGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
*
83343708 TATAGAATTACCGTTT
66 TATAGAATTACTGTTT
* * * * * * **
83343724 CT-TCCTCGATTTACAAAATTATCATTTTACCTTTGATTTACAGAATTACTGTTTTACCCTCGAT
1 -TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGAT
* *
83343788 TTACAGAATTACAGTTT
65 TTATAGAATTACTGTTT
* * **
83343805 TACCCTCAATTTATAAAATTACCGTTTTACCC-CGATTTATAGAATTACCATTTTACCCTTAATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
83343869 TATAGAATTACTGTTT
66 TATAGAATTACTGTTT
* * * **
83343885 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTTTACC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACC
83343943 TTAATTTTGA
Statistics
Matches: 256, Mismatches: 41, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
80 69 0.27
81 186 0.73
82 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TATAGAATTACTGTTT
Found at i:83343991 original size:27 final size:27
Alignment explanation
Indices: 83343961--83344021 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
83343951 GAAATTACTG
83343961 AAATACCCCT-GTAGGGTAGAATTACCA
1 AAATACCCCTAGT-GGGTAGAATTACCA
* **
83343988 AAATGCCCCTAGTTTGTAGAATTACCA
1 AAATACCCCTAGTGGGTAGAATTACCA
83344015 AAATACC
1 AAATACC
83344022 ACTGGTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (27 bp):
AAATACCCCTAGTGGGTAGAATTACCA
Found at i:83344029 original size:27 final size:26
Alignment explanation
Indices: 83343980--83344075 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 26
83343970 TGTAGGGTAG
* *
83343980 AATTACCAAAATGCCCCTAGTTTGTAG
1 AATTACCAAAAT-ACCCTAGTTTGTAA
* *
83344007 AATTACCAAAATACCACTGGTTTTTAA
1 AATTACCAAAATACC-CTAGTTTGTAA
*
83344034 AATTACC-AAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AGTTTGTAA
*
83344060 AATTACCAAAACACCC
1 AATTACCAAAATACCC
83344076 CTGATTTACA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.03
26 22 0.38
27 34 0.59
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:83344102 original size:27 final size:26
Alignment explanation
Indices: 83344032--83344160 Score: 98
Period size: 27 Copynumber: 4.8 Consensus size: 26
83344022 ACTGGTTTTT
* ** **
83344032 AAAATTACCAAATACCCTCAATTTGT
1 AAAATTACAAAATACCCTTGATTTAC
* *
83344058 AAAATTACCAAAACACCCCTGATTTAC
1 AAAATTA-CAAAATACCCTTGATTTAC
*
83344085 AAAATTACAGAAATACCCTTAACTTT-C
1 AAAATTACA-AAATACCCTTGA-TTTAC
* * *
83344112 AAAAATTATAGAAATACCATTGGTTTAC
1 -AAAATTACA-AAATACCCTTGATTTAC
83344140 AAAATTACTAAAATACCCTTG
1 AAAATTAC-AAAATACCCTTG
83344161 GTTTGTAGAT
Statistics
Matches: 81, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
26 9 0.11
27 49 0.60
28 23 0.28
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (26 bp):
AAAATTACAAAATACCCTTGATTTAC
Found at i:83345150 original size:25 final size:25
Alignment explanation
Indices: 83345097--83345199 Score: 95
Period size: 25 Copynumber: 4.2 Consensus size: 25
83345087 AGGAAGTGCT
* * *
83345097 AAAAGGGC-TATGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTGATC
* *
83345121 GAAAAAGGCTTTTGCCCGAGTTGATC
1 -AAAAGGGCTTTTGCCCCAGTTGATC
*
83345147 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTGATC
* * *
83345172 CAAAGGGC-TTTGCCCTAG-TGATT
1 AAAAGGGCTTTTGCCCCAGTTGATC
83345195 AAAAG
1 AAAAG
83345200 AGACTAGGCC
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
23 7 0.11
24 9 0.14
25 36 0.56
26 12 0.19
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTGATC
Found at i:83345398 original size:42 final size:42
Alignment explanation
Indices: 83345339--83345430 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
83345329 TAGTCTCCCC
* *
83345339 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
83345381 AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
83345423 AAATGGGC
1 AAATGGGC
83345431 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
Found at i:83350532 original size:50 final size:51
Alignment explanation
Indices: 83350451--83350621 Score: 139
Period size: 51 Copynumber: 3.4 Consensus size: 51
83350441 ACGTCATGTA
* * * * **
83350451 TGTAGTACTAAGTGCT-GGCTACTACGTGTACCAGAT-GGTTAGGTCGTATG
1 TGTAGTACTAAGTG-TAGGCTACTATGCGTACCAGATAGCTTAGATCACATG
* *
83350501 TGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGATCACATG
1 TGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAGCTTAGATCACATG
* * * * ** * * *
83350552 TGTGGTACTAAGTGCAGGCCACTATGAGTAAAAGATAGCTTTGGTCACAAG
1 TGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAGCTTAGATCACATG
* * *
83350603 TGTGGTACTATGTGAAGGC
1 TGTAGTACTAAGTGTAGGC
83350622 CACTTTGTGA
Statistics
Matches: 99, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
49 1 0.01
50 31 0.31
51 67 0.68
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (51 bp):
TGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAGCTTAGATCACATG
Found at i:83350564 original size:51 final size:51
Alignment explanation
Indices: 83350498--83350675 Score: 153
Period size: 51 Copynumber: 3.5 Consensus size: 51
83350488 GTTAGGTCGT
* * * * ***
83350498 ATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGATCAC
1 ATGTGTGGTACTAAGTGAAGGCCACTATGAGTAAAAGATAGCTTCGATCAC
* * *
83350549 ATGTGTGGTACTAAGTGCAGGCCACTATGAGTAAAAGATAGCTTTGGTCAC
1 ATGTGTGGTACTAAGTGAAGGCCACTATGAGTAAAAGATAGCTTCGATCAC
* * * * *
83350600 AAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAAGATAGCTTTGA-CTAC
1 ATGTGTGGTACTAAGTGAAGGCCACTATGAGTAA-AAGATAGCTTCGATC-AC
* * * *
83350651 AAGGGTGGTACTATGTGCAGGCCAC
1 ATGTGTGGTACTAAGTGAAGGCCAC
83350676 CGGGCATCTG
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
50 3 0.03
51 105 0.97
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (51 bp):
ATGTGTGGTACTAAGTGAAGGCCACTATGAGTAAAAGATAGCTTCGATCAC
Found at i:83353066 original size:50 final size:50
Alignment explanation
Indices: 83352989--83353097 Score: 164
Period size: 50 Copynumber: 2.2 Consensus size: 50
83352979 ATGACCATGC
* * *
83352989 ATATTCGGCCAGATAGGTATCTTCATATGTGATGTTATATTTGATCTTGT
1 ATATTCGGCCACATAGGTATCTACATATATGATGTTATATTTGATCTTGT
* *
83353039 ATATTCGGTCACATAGGTATGTACATATATGATGTTATATTTGATCTTGT
1 ATATTCGGCCACATAGGTATCTACATATATGATGTTATATTTGATCTTGT
*
83353089 GTATTCGGC
1 ATATTCGGC
83353098 TAAATGAGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (50 bp):
ATATTCGGCCACATAGGTATCTACATATATGATGTTATATTTGATCTTGT
Found at i:83359630 original size:42 final size:41
Alignment explanation
Indices: 83359571--83359741 Score: 180
Period size: 42 Copynumber: 4.0 Consensus size: 41
83359561 TTAGGGTTAC
* *
83359571 TGAGATTACGTGTAAGACCATAACTGGGATATGGCATCGGTA
1 TGAGATT-CATGTAAGACCATATCTGGGATATGGCATCGGTA
* * *
83359613 TGGGACTTCATATAAGACCATATCTGGGATATGGCATTGGTA
1 TGAGA-TTCATGTAAGACCATATCTGGGATATGGCATCGGTA
* * * *
83359655 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTCATGTAAGACCATATCTGGGATA-TGGCATCGGTA
** * *
83359698 CAAGATTACATGTAAGACCATATCTGAGATATGGCATTGGTA
1 TGAGATT-CATGTAAGACCATATCTGGGATATGGCATCGGTA
83359740 TG
1 TG
83359742 GTACCGAGTG
Statistics
Matches: 103, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 70 0.68
43 33 0.32
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (41 bp):
TGAGATTCATGTAAGACCATATCTGGGATATGGCATCGGTA
Found at i:83359729 original size:85 final size:84
Alignment explanation
Indices: 83359571--83359741 Score: 236
Period size: 85 Copynumber: 2.0 Consensus size: 84
83359561 TTAGGGTTAC
* ***
83359571 TGAGATTACGTGTAAGACCATAACTGGGATATGGCATCGGTATGGGACTTCATATAAGACCATAT
1 TGAGATTACGTGTAAGACCATAACTGGGATATGGCATCGATACAAGACTTCATATAAGACCATAT
*
83359636 CTGGGATATGGCATTGGTA
66 CTGAGATATGGCATTGGTA
* * * *
83359655 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATACAAGA-TTACATGTAAGACCAT
1 TGAGATTACGTGTAAGACCATAACTGGGATA-TGGCATCGATACAAGACTT-CATATAAGACCAT
83359719 ATCTGAGATATGGCATTGGTA
64 ATCTGAGATATGGCATTGGTA
83359740 TG
1 TG
83359742 GTACCGAGTG
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
84 30 0.39
85 46 0.61
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (84 bp):
TGAGATTACGTGTAAGACCATAACTGGGATATGGCATCGATACAAGACTTCATATAAGACCATAT
CTGAGATATGGCATTGGTA
Found at i:83360767 original size:24 final size:25
Alignment explanation
Indices: 83360740--83360816 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
83360730 GCCTAGCCTC
83360740 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
83360764 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* * * *
83360789 TTTCAGTAAACTAGGGCATAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
83360814 TTT
1 TTT
83360817 AGCACTTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 6 0.13
25 40 0.87
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:83361015 original size:27 final size:27
Alignment explanation
Indices: 83360983--83361040 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
83360973 TTGCCCACAA
83360983 GGGCAAAACAGTCATTTAACACCCTAG
1 GGGCAAAACAGTCATTTAACACCCTAG
* *
83361010 GGGCAAAACAGTCATTTAACGCCCTTG
1 GGGCAAAACAGTCATTTAACACCCTAG
83361037 GGGC
1 GGGC
83361041 TTTTACATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (27 bp):
GGGCAAAACAGTCATTTAACACCCTAG
Found at i:83361727 original size:27 final size:27
Alignment explanation
Indices: 83361697--83361754 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
83361687 TACAAGGGTA
83361697 TTACGGTCACTTTACCCTATAGGGGCT
1 TTACGGTCACTTTACCCTATAGGGGCT
83361724 TTACGGTCACTTTACCCTATAGGGGCT
1 TTACGGTCACTTTACCCTATAGGGGCT
83361751 TTAC
1 TTAC
83361755 AGTCTTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTATAGGGGCT
Found at i:83361773 original size:27 final size:27
Alignment explanation
Indices: 83361697--83361775 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
83361687 TACAAGGGTA
* *
83361697 TTACGGTCACTTTACCCTATAGGGGCT
1 TTACAGTCACTTTACACTATAGGGGCT
* *
83361724 TTACGGTCACTTTACCCTATAGGGGCT
1 TTACAGTCACTTTACACTATAGGGGCT
**
83361751 TTACAGTCTTTTTA-ACTATTAGGGG
1 TTACAGTCACTTTACACTA-TAGGGG
83361776 TATTTTAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
26 3 0.06
27 44 0.94
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
TTACAGTCACTTTACACTATAGGGGCT
Found at i:83361914 original size:56 final size:54
Alignment explanation
Indices: 83361828--83361983 Score: 161
Period size: 54 Copynumber: 2.9 Consensus size: 54
83361818 ACAAACCAGG
* ** *
83361828 ATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCAAAGGT
1 ATTTCAGTAATTTTGTAAACTAGGGGTATTT-TGATAA-TTTTACAAA-TCAAAGGT
* * * *
83361884 ATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTAAAGGT
1 ATTTCAGTAATTTTGTAAACTAGGGGTATTTTGATAATTTTACAAATCAAAGGT
* ** * *
83361938 ATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTGTACAAA
1 ATTTCAGTAATTTTGTAAACTAGGGGTATTTTGATAATTTTACAAA
83361984 CTAGGGGTAT
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 48 0.56
55 9 0.10
56 29 0.34
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (54 bp):
ATTTCAGTAATTTTGTAAACTAGGGGTATTTTGATAATTTTACAAATCAAAGGT
Found at i:83361920 original size:27 final size:27
Alignment explanation
Indices: 83361881--83362003 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
83361871 GAAAGTCAAA
** *
83361881 GGTATTTCT-GTAATTTTGTAAATTAGG
1 GGTATTT-TGGTAATTTTACAAACTAGG
* **
83361908 GGTATTTTGGTAATTTTACAAATTAAA
1 GGTATTTTGGTAATTTTACAAACTAGG
*
83361935 GGTATTTCGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
83361962 GGTATTTTGGTAATTGTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
83361989 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
83362004 CTACCCTACA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 84 0.99
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:83362071 original size:27 final size:27
Alignment explanation
Indices: 83362035--83362153 Score: 175
Period size: 27 Copynumber: 4.4 Consensus size: 27
83362025 GTAATTTCAC
83362035 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
83362062 AATCAAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
83362089 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
83362116 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
83362143 AATCGAAGGTA
1 AATCGAGGGTA
83362154 CTTTGGTAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:83362188 original size:81 final size:80
Alignment explanation
Indices: 83362019--83362191 Score: 183
Period size: 81 Copynumber: 2.1 Consensus size: 80
83362009 CTACAGTGGT
*
83362019 ATTTCAGTAATTTCACAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGATAATT
1 ATTTCAGTAATTTCAAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGATAATT
*
83362084 CTGTAAATCGAGGGT
66 CTGTAAATCGAGGGC
*** * *** *
83362099 AAAACAGTAA-TTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAA-GGTACTTTGGTA
1 ATTTCAGTAATTTC-A-AAATCGAGGGTAAAACGGTAATTCTGTAAATC-AAGGGTAAAATGATA
83362162 ATT-T-TACAAGTCGAGGGC
63 ATTCTGTA-AA-TCGAGGGC
83362180 ATTTCAGTAATT
1 ATTTCAGTAATT
83362192 GGTAAACTAA
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
79 5 0.07
80 11 0.15
81 55 0.74
82 3 0.04
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (80 bp):
ATTTCAGTAATTTCAAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGATAATT
CTGTAAATCGAGGGC
Found at i:83382093 original size:43 final size:43
Alignment explanation
Indices: 83382040--83382164 Score: 205
Period size: 43 Copynumber: 2.9 Consensus size: 43
83382030 GCTGGTATTA
83382040 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
83382083 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
83382126 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
83382165 AATGATATGT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.14, C:0.25, G:0.33, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:83387452 original size:11 final size:10
Alignment explanation
Indices: 83387397--83387454 Score: 84
Period size: 11 Copynumber: 5.8 Consensus size: 10
83387387 ATCTAAAATA
83387397 AAAAATATTT
1 AAAAATATTT
83387407 AAAAAATATTT
1 -AAAAATATTT
83387418 AAAAAT-TTT
1 AAAAATATTT
83387427 AAAAAT-TTT
1 AAAAATATTT
83387436 AAAAATTATTT
1 AAAAA-TATTT
83387447 AAAAATAT
1 AAAAATAT
83387455 AATAATTTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
9 17 0.38
10 10 0.22
11 18 0.40
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAAATATTT
Found at i:83409239 original size:27 final size:27
Alignment explanation
Indices: 83409201--83409254 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
83409191 CTTCTTGAAT
*
83409201 TTTTCCTTGATCTTTGCTCACCAAGAC
1 TTTTCCTTGATCTTTACTCACCAAGAC
83409228 TTTTCCTTGATCTTTACTCACCAAGAC
1 TTTTCCTTGATCTTTACTCACCAAGAC
83409255 AAGTATAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.30, G:0.09, T:0.41
Consensus pattern (27 bp):
TTTTCCTTGATCTTTACTCACCAAGAC
Found at i:83417688 original size:39 final size:39
Alignment explanation
Indices: 83417640--83417956 Score: 305
Period size: 39 Copynumber: 8.1 Consensus size: 39
83417630 TAAGTGCAAA
* *
83417640 TCAGGGGTACCAAAGTGCAACAGGGGCATGTATGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACGTATGTGCAT
* * *
83417679 TTAGGGGTACCGAAGTACAA-AGGGGGCACGTAGGTGCAT
1 TCAGGGGTACCAAAGTACAACA-GGGGCACGTATGTGCAT
* * * *
83417718 TCAGGGATACCAAAATACAACGGGGGCACGTAGGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACGTATGTGCAT
* * * *
83417757 TCAAGGGTACCAAATTACAACAAGGGCACATATGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACGTATGTGCAT
* * ** * *
83417796 TTAGAGGTACCAAAGTACAATGGGGGCACATAGGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACGTATGTGCAT
* * *** *
83417835 TCATGGTTATTGAAGTACAACAGGGGCATGTATGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACGTATGTGCAT
* ** *
83417874 TCAGGAGTACTGAAGTACAACAGGGGCAAGTATGTGCAT
1 TCAGGGGTACCAAAGTACAACAGGGGCACGTATGTGCAT
* * * *
83417913 TCAGGGTTGCCAGAA-TACAATAGGGGCACGAATGTGCAT
1 TCAGGGGTACCA-AAGTACAACAGGGGCACGTATGTGCAT
83417952 TCAGG
1 TCAGG
83417957 TACAATTACA
Statistics
Matches: 225, Mismatches: 50, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
38 1 0.00
39 222 0.99
40 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.31, T:0.21
Consensus pattern (39 bp):
TCAGGGGTACCAAAGTACAACAGGGGCACGTATGTGCAT
Found at i:83417932 original size:117 final size:117
Alignment explanation
Indices: 83417644--83417956 Score: 341
Period size: 117 Copynumber: 2.7 Consensus size: 117
83417634 TGCAAATCAG
* * *
83417644 GGGTACCAAAGTGCAACAGGGGCATGTATGTGCATTTAGGGGTACC-GAAGTACAAAGGGGGCAC
1 GGGTACCAAAGTACAACAGGGGCAAGTATGTGCATTTA-GGGTACCAGAAGTACAATGGGGGCAC
* *
83417708 GTAGGTGCATTCAGGGATACCAAAATACAACGGGGGCACGTAGGTGCATTCAA
65 ATAGGTGCATTCAGGGATACCAAAATACAACAGGGGCACGTAGGTGCATTCAA
* *
83417761 GGGTACCAAATTACAACAAGGGCACA-TATGTGCATTTAGAGGTACCA-AAGTACAATGGGGGCA
1 GGGTACCAAAGTACAACAGGGGCA-AGTATGTGCATTTAG-GGTACCAGAAGTACAATGGGGGCA
* * *** * * *
83417824 CATAGGTGCATTCATGGTTATTGAAGTACAACAGGGGCATGTATGTGCATTC-A
64 CATAGGTGCATTCAGGGATACCAAAATACAACAGGGGCACGTAGGTGCATTCAA
** * * *
83417877 GGAGTACTGAAGTACAACAGGGGCAAGTATGTGCATTCAGGGTTGCCAGAA-TACAATAGGGGCA
1 GG-GTACCAAAGTACAACAGGGGCAAGTATGTGCATTTAGGG-TACCAGAAGTACAATGGGGGCA
*
83417941 CGA-ATGTGCATTCAGG
64 C-ATAGGTGCATTCAGG
83417957 TACAATTACA
Statistics
Matches: 164, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
116 7 0.04
117 154 0.94
118 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.31, T:0.21
Consensus pattern (117 bp):
GGGTACCAAAGTACAACAGGGGCAAGTATGTGCATTTAGGGTACCAGAAGTACAATGGGGGCACA
TAGGTGCATTCAGGGATACCAAAATACAACAGGGGCACGTAGGTGCATTCAA
Found at i:83425097 original size:43 final size:41
Alignment explanation
Indices: 83424951--83425097 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 41
83424941 TATCCCATAT
* * * *
83424951 ATGGTCTTACATGTTAT-CACATACCAATGCCACTTTCCCAGAT
1 ATGGTCTTACATGTAATCCA-ATA--AATGCCAATGTCCCAGAC
* * *
83424994 AGGGTCTTACATGTAATCGATTAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCCAATAA--ATGCCAATGTCCCAGAC
** *
83425037 ATGGTCTTACACATAATCTCAATATAATGCCAGTGTCCCAGAC
1 ATGGTCTTACATGTAATC-CAATA-AATGCCAATGTCCCAGAC
83425080 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
83425098 ACATCTCAAT
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
43 78 0.93
44 4 0.05
45 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (41 bp):
ATGGTCTTACATGTAATCCAATAAATGCCAATGTCCCAGAC
Found at i:83436453 original size:8 final size:8
Alignment explanation
Indices: 83436414--83436456 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
83436404 ATGTATCGAC
*
83436414 AAAAGCAG
1 AAAAGCCG
*
83436422 AAATGCCG
1 AAAAGCCG
*
83436430 AAAAGCCA
1 AAAAGCCG
83436438 AAAAGCCG
1 AAAAGCCG
83436446 AAAAGCCG
1 AAAAGCCG
83436454 AAA
1 AAA
83436457 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.56, C:0.21, G:0.21, T:0.02
Consensus pattern (8 bp):
AAAAGCCG
Found at i:83436714 original size:29 final size:27
Alignment explanation
Indices: 83436671--83436750 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
83436661 CATGATTATG
* *
83436671 AATGTGACTGGGCCTAACGGGCCATATA
1 AATGTGATTGGGCCTAATGGGCCA-ATA
*
83436699 AATGTGATTTGGGCCTAATGGGCCAATT
1 AATGTGA-TTGGGCCTAATGGGCCAATA
* *
83436727 AATATGATTGGGCTTAATGGGCCA
1 AATGTGATTGGGCCTAATGGGCCA
83436751 GATACAGGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 16 0.35
28 15 0.33
29 15 0.33
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AATGTGATTGGGCCTAATGGGCCAATA
Found at i:83437938 original size:26 final size:26
Alignment explanation
Indices: 83437903--83437961 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
83437893 TGGGATGTTA
*
83437903 TACTT-CCCGTACTTTTTCACTTCTG
1 TACTTACCCGTACTTATTCACTTCTG
*
83437928 TACTTACCCGTACTTATTCATTTCTG
1 TACTTACCCGTACTTATTCACTTCTG
83437954 TACTTACC
1 TACTTACC
83437962 TCATGTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 5 0.16
26 26 0.84
ACGTcount: A:0.17, C:0.31, G:0.07, T:0.46
Consensus pattern (26 bp):
TACTTACCCGTACTTATTCACTTCTG
Found at i:83438159 original size:29 final size:30
Alignment explanation
Indices: 83438125--83438185 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
83438115 CAAGTAGTCG
*
83438125 AAGCTAG-TTAAATTGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
*
83438154 AAGCTAGTTTAAATCGCAGACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
83438184 AA
1 AA
83438186 CTTTCATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:83444892 original size:40 final size:40
Alignment explanation
Indices: 83444809--83445055 Score: 272
Period size: 40 Copynumber: 6.2 Consensus size: 40
83444799 CGGATGATAA
* * **
83444809 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA-T
* *
83444849 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
83444889 CCGGGCTTAGTCCTGAAGGCCTTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
83444929 GCGGGCTAAGTCTCAAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
* *
83444969 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
83445009 CCGGGCTAAGTCCCAAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
83445048 CC-GGCTAA
1 CCGGGCTAA
83445056 ACCCCAAAGG
Statistics
Matches: 176, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
38 8 0.05
39 11 0.06
40 152 0.86
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83453078 original size:40 final size:40
Alignment explanation
Indices: 83452995--83453211 Score: 248
Period size: 40 Copynumber: 5.5 Consensus size: 40
83452985 TGGATGATAA
* * **
83452995 CCGGGCTAAGTCCC-AAGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA-T
*
83453035 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
83453075 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
*
83453115 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
83453155 CCAGGTTAAGTCCTGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
83453194 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
83453212 TACTTGGTTG
Statistics
Matches: 156, Mismatches: 16, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
38 14 0.09
39 11 0.07
40 125 0.80
41 6 0.04
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83453128 original size:80 final size:78
Alignment explanation
Indices: 83452991--83453211 Score: 277
Period size: 80 Copynumber: 2.8 Consensus size: 78
83452981 TGTTTGGATG
*
83452991 ATAACCGGGCTAAGTCCC-AAGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGC-AGT-ACTATA-TCCGGGCTAAGTCCCGAAGG
*
83453054 CGTTTGTGCGAGTTACT
62 CATTTGTGCGAGTTACT
* *
83453071 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGC--AGTACTATATCCGGGCTAAGTCCCGAAGGCA
83453136 TTTGTGCGAGTTACT
64 TTTGTGCGAGTTACT
* * * **
83453151 ATAACCAGGTTAAGTCCTGAAGGCATTTGAGCAGTAGCTATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAGTA-CTATATCCGGGCTAAGTCCCGAAGG
83453212 TACTTGGTTG
Statistics
Matches: 125, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 18 0.14
79 8 0.06
80 92 0.74
81 7 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAGTACTATATCCGGGCTAAGTCCCGAAGGCATT
TGTGCGAGTTACT
Found at i:83455154 original size:43 final size:43
Alignment explanation
Indices: 83454986--83455156 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 43
83454976 ATATAGCTTG
* * * * *
83454986 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA-TA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* * * * ** *
83455027 TATCGATGCCACTGTACCAGACAGGGTCTTACACGTAAT-TGAT
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* *
83455070 TAACGATGCCAATGTCTCAGACATGGTCTTACACGTAATCACAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
*
83455114 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
83455157 CTCAATAACC
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 93 0.89
44 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
Found at i:83458824 original size:46 final size:47
Alignment explanation
Indices: 83458687--83458902 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 47
83458677 GTTATTTGTG
* * * * **
83458687 AGCCACTGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACGGG
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATGTA
* * * *
83458735 AGCTAGTGTAAGA-CATGTCTGGGGCATGCATTAGCCT-CGAGATGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGCA-TCGGCTACGAGATGTA
*
83458781 AGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACAAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTA
* * * *
83458826 -GTCAGTGTAAGACCATGTCTAGGACATGACATCGGC-ATGGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCTA-CGAGATGT-A
*
83458874 GAGCTAGTGTAAGACCATGTCTGGGACAT
1 -AGCCAGTGTAAGACCATGTCTGGGACAT
83458903 TGTAACAGCC
Statistics
Matches: 135, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.08
45 19 0.14
46 55 0.41
47 15 0.11
48 11 0.08
50 24 0.18
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTA
Found at i:83463371 original size:26 final size:26
Alignment explanation
Indices: 83463305--83463400 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
83463295 TTATAAGATA
* * *
83463305 AAATGACTGTTTTACCCTTATGTGGC
1 AAATGACTATTTTGCCCTTATGTGGT
*
83463331 AAAGTGACTGTTTTGCCCTTATGTGGT
1 AAA-TGACTATTTTGCCCTTATGTGGT
* * *
83463358 AAATGACTATTTTGCCTTTATATGAT
1 AAATGACTATTTTGCCCTTATGTGGT
*
83463384 AAAATGACGATTTTGCC
1 -AAATGACTATTTTGCC
83463401 ATTCTGAGAT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 22 0.36
27 39 0.64
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (26 bp):
AAATGACTATTTTGCCCTTATGTGGT
Found at i:83463396 original size:27 final size:26
Alignment explanation
Indices: 83463292--83463400 Score: 78
Period size: 27 Copynumber: 4.1 Consensus size: 26
83463282 TGTACTTGAA
* *
83463292 CCCTTATAAGATAAAATGACTG-TTTTA
1 CCCTTATATGAT-AAATGAC-GATTTTG
* **
83463319 CCCTTATGTGGCAAAGTGACTG-TTTTG
1 CCCTTATATGATAAA-TGAC-GATTTTG
* * *
83463346 CCCTTATGTGGTAAATGACTATTTTG
1 CCCTTATATGATAAATGACGATTTTG
*
83463372 CCTTTATATGATAAAATGACGATTTTG
1 CCCTTATATGAT-AAATGACGATTTTG
83463399 CC
1 CC
83463401 ATTCTGAGAT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 21 0.31
27 47 0.69
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (26 bp):
CCCTTATATGATAAATGACGATTTTG
Found at i:83463467 original size:27 final size:27
Alignment explanation
Indices: 83463413--83463664 Score: 244
Period size: 27 Copynumber: 9.3 Consensus size: 27
83463403 TCTGAGATAG
*
83463413 AATGACTGAAATACCCCCAT-AGGTTAA
1 AATGACTGAAATACCCCTATAAGG-TAA
* *
83463440 AATAACCGAAATACCCCTATAAGGTAA
1 AATGACTGAAATACCCCTATAAGGTAA
* * *
83463467 AATGA-TATAAATACCCCCATATGGTAA
1 AATGACT-GAAATACCCCTATAAGGTAA
* *
83463494 AATGATTGAAATACCTCTATAAGGTAA
1 AATGACTGAAATACCCCTATAAGGTAA
*
83463521 AATGACTGAAATA-CCCTCATAGGGTAA
1 AATGACTGAAATACCCCT-ATAAGGTAA
* * *
83463548 AATGATTGAGATACCCTTATAAGGTAA
1 AATGACTGAAATACCCCTATAAGGTAA
*
83463575 AATTA-TCGAAATACCCCTATACA-GTAA
1 AATGACT-GAAATACCCCTATA-AGGTAA
* * * *
83463602 AGTGACTGTAATACCCCTGTATGGTAA
1 AATGACTGAAATACCCCTATAAGGTAA
* * *
83463629 AATGACTGTAATATCCCTGTAAGGTAA
1 AATGACTGAAATACCCCTATAAGGTAA
83463656 AATGACTGA
1 AATGACTGA
83463665 TTTGCCCTAC
Statistics
Matches: 185, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
26 4 0.02
27 172 0.93
28 9 0.05
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.26
Consensus pattern (27 bp):
AATGACTGAAATACCCCTATAAGGTAA
Found at i:83464115 original size:33 final size:32
Alignment explanation
Indices: 83464029--83464115 Score: 88
Period size: 33 Copynumber: 2.6 Consensus size: 32
83464019 TACTGCACTA
*
83464029 ATTCTGTAATGGGCTTAGGCCCCACTGATACTG
1 ATTCTGAAAT-GGCTTAGGCCCCACTGATACTG
*
83464062 -TTACTGGAATGGACTTAGGCCCACACTGATTA-TG
1 ATT-CTGAAATGG-CTTAGGCCC-CACTGA-TACTG
*
83464096 ATTCTGAAATGGCTAAGGCC
1 ATTCTGAAATGGCTTAGGCC
83464116 TTAACTAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
32 4 0.09
33 22 0.48
34 16 0.35
35 4 0.09
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (32 bp):
ATTCTGAAATGGCTTAGGCCCCACTGATACTG
Found at i:83481359 original size:48 final size:48
Alignment explanation
Indices: 83481242--83481453 Score: 159
Period size: 48 Copynumber: 4.5 Consensus size: 48
83481232 CTATTGGTGT
* * * *
83481242 CGATGCCATGTCCCAGACAGGTCTTACACT-G---ATACACCACAA-GC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCCTATATATCTCAAGGC
* * * * * * *
83481286 TGATGCCATATCCCAAACAGGTCTTACGCTAGCCTGTATATCGCAAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCCTATATATCTCAAGGC
* ** *
83481335 CGATGCATGTCCCAGACATGTCTTACACTAG-CTCT-CGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCTATATATCTCAAGGC
* * * * * **
83481381 CGATACATGTCCCATACATGTCTTACACTGGCTTAAATATCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCTATATATCTCAAGGC
83481429 CGATGCATGTCCCAGACATGTCTTA
1 CGATGCATGTCCCAGACATGTCTTA
83481454 AACTGGCTCT
Statistics
Matches: 130, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
44 26 0.20
45 1 0.01
46 35 0.27
47 4 0.03
48 58 0.45
49 6 0.05
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCCTATATATCTCAAGGC
Found at i:83481459 original size:48 final size:46
Alignment explanation
Indices: 83481329--83481502 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
83481319 CTGTATATCG
* *
83481329 CAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCT
1 CAAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCT
* * * *
83481375 CAATGCCGATACATGTCCCATACATGTCTTACACTGGCT-TAAATATCT
1 CAAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT---CATCT
** *
83481423 TGAGGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCATGCT
1 CAAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-CT
* * **
83481470 -ATGGCTGATGTGTGTCCCAGACATGTCTTACAC
1 CAAGGCCGATGCATGTCCCAGACATGTCTTACAC
83481503 CACACACATA
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 64 0.62
47 2 0.02
48 36 0.35
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CAAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCT
Found at i:83481486 original size:94 final size:93
Alignment explanation
Indices: 83481331--83481502 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 93
83481321 GTATATCGCA
* * *
83481331 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATACATGTCCCAT
1 AGGCCGATGCATGTCCCAGACATGTCTTAAACTAGCTCTCATCT-AATGCCGATACATGTCCCAG
83481396 ACATGTCTTACACTGGCTTAAATATCTTG
65 ACATGTCTTACACTGGCTTAAATATCTTG
* * ***
83481425 AGGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCATGCT-ATGGCTGATGTGTGTCCCA
1 AGGCCGATGCATGTCCCAGACATGTCTTAAACTAGCTCTCAT-CTAAT-GCCGATACATGTCCCA
83481489 GACATGTCTTACAC
64 GACATGTCTTACAC
83481503 CACACACATA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 2 0.03
94 64 0.94
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
AGGCCGATGCATGTCCCAGACATGTCTTAAACTAGCTCTCATCTAATGCCGATACATGTCCCAGA
CATGTCTTACACTGGCTTAAATATCTTG
Found at i:83491933 original size:48 final size:47
Alignment explanation
Indices: 83491851--83492069 Score: 119
Period size: 46 Copynumber: 4.6 Consensus size: 47
83491841 TACACCACAA
* * *
83491851 GCTGATGCCATATCCC-GAACAGGTCTTACGCTAGCCTGTATATCGCGAG
1 GCTGATG-CATGTCCCAG-ACATGTCTTACACTAGCCTGTATAT-GCGAG
* * *
83491900 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTA---AAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-CT-GTATATGCGAG
* ** * * * **
83491946 GCCGATAAATGTCCCATACATGTCTTACACTGGCTTAAATAT-CTTGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCTGTATATGC--GAG
* * * * * *
83491994 GCCGATGCATGTCCCAGACATGTCTTAAACT-GGCTCT-CATGCTATG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCTGTATATGCGA-G
**
83492040 GCTGATGTGTGTCCCAGACATGTCTTACAC
1 GCTGATGCATGTCCCAGACATGTCTTACAC
83492070 CACACACATA
Statistics
Matches: 130, Mismatches: 31, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 59 0.45
47 3 0.02
48 50 0.38
49 10 0.08
50 4 0.03
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (47 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCCTGTATATGCGAG
Found at i:83492053 original size:94 final size:93
Alignment explanation
Indices: 83491897--83492069 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 93
83491887 TGTATATCGC
* * *
83491897 GAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTAAATGCCGATAAATGTCCCA
1 GAGGCCGATGCATGTCCCAGACATGTCTTAAACTAGCTCTCATCT-AATGCCGATAAATGTCCCA
*
83491962 TACATGTCTTACACTGGCTTAAATATCTT
65 GACATGTCTTACACTGGCTTAAATATCTT
* * ***
83491991 GAGGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCATGCT-ATGGCTGATGTGTGTCCC
1 GAGGCCGATGCATGTCCCAGACATGTCTTAAACTAGCTCTCAT-CTAAT-GCCGATAAATGTCCC
83492055 AGACATGTCTTACAC
64 AGACATGTCTTACAC
83492070 CACACACATA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
93 2 0.03
94 64 0.94
95 2 0.03
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (93 bp):
GAGGCCGATGCATGTCCCAGACATGTCTTAAACTAGCTCTCATCTAATGCCGATAAATGTCCCAG
ACATGTCTTACACTGGCTTAAATATCTT
Found at i:83499454 original size:472 final size:472
Alignment explanation
Indices: 83498570--83499514 Score: 1773
Period size: 472 Copynumber: 2.0 Consensus size: 472
83498560 TTTCTAACGT
83498570 CAGCATCCAATAAGGGGCACACGGCCAAGGCACGCGCCCATGGCCAGAGGCAGTGTCCTCCACAT
1 CAGCATCCAATAAGGGGCACACGGCCAAGGCACGCGCCCATGGCCAGAGGCAGTGTCCTCCACAT
*
83498635 GGCTGAGACACACGGCTGTGTCTCTGCCAGTGTGTTTACTACAATGCAATCTAGCTTGCAAATTT
66 GGCTGAGACACACGGCCGTGTCTCTGCCAGTGTGTTTACTACAATGCAATCTAGCTTGCAAATTT
* *
83498700 TACGTGCAGGGGACACATGGCCGAACGACACGCCCATAGGGCTGACTGTGTGTCACCCATGGTCT
131 TACATGCAGGGGACACATGGCCGAACGACACGCCCATAGGGCTGACCGTGTGTCACCCATGGTCT
* *
83498765 AGACACACGCCGTGTGTCAACCCATGTGGACAATTTAAGGCTATCTACCAAGCCTTTGCCACCCT
196 AGACACACGCCGTGTGTCAACCCATGTGGACAATATAAGGCTATCAACCAAGCCTTTGCCACCCT
83498830 GAAACAAAATCTAACATCAACCAACGCATCAAAGATTATCTTAATATGATTTCTCAACCAAACAA
261 GAAACAAAATCTAACATCAACCAACGCATCAAAGATTATCTTAATATGATTTCTCAACCAAACAA
*
83498895 CCATAGTTAAGACCTATATACATTACATATATTCAACTATGCTAACAATTTCACCTTCATGAAAG
326 CCATAGTTAAGACCTATATACATTACATATATTCAACTATGCCAACAATTTCACCTTCATGAAAG
83498960 GCTAGCTTGCATTCACATAATAACTTTTAATATTAGCCATTTTTGATGGCCTTATTCAAAATGAA
391 GCTAGCTTGCATTCACATAATAACTTTTAATATTAGCCATTTTTGATGGCCTTATTCAAAATGAA
83499025 TCAAATTCTAAAGTAAG
456 TCAAATTCTAAAGTAAG
* *
83499042 CAGCATCCAATAAGGGGCACATGGCCAAGGCACGCGCCCATGGCCAGAGGTAGTGTCCTCCACAT
1 CAGCATCCAATAAGGGGCACACGGCCAAGGCACGCGCCCATGGCCAGAGGCAGTGTCCTCCACAT
* *
83499107 GGCTGAGACACACGGCCGTGTCTCTGCCAGTGTGTTTACTACAATGCATTCTAGCTTGTAAATTT
66 GGCTGAGACACACGGCCGTGTCTCTGCCAGTGTGTTTACTACAATGCAATCTAGCTTGCAAATTT
* *
83499172 TACATGCAGGGGACACATGGCTGAACGACACGCCCATGGGGCTGACCGTGTGTCACCCATGGTCT
131 TACATGCAGGGGACACATGGCCGAACGACACGCCCATAGGGCTGACCGTGTGTCACCCATGGTCT
83499237 AGACACACGCCGTGTGTCAACCCATGTGGACAATATAAGGCTATCAACCAAGCCTTTGCCACCCT
196 AGACACACGCCGTGTGTCAACCCATGTGGACAATATAAGGCTATCAACCAAGCCTTTGCCACCCT
83499302 GAAACAAAATCTAACATCAACCAACGCATCAAAGATTATCTTAATATGATTTCTCAACCAAACAA
261 GAAACAAAATCTAACATCAACCAACGCATCAAAGATTATCTTAATATGATTTCTCAACCAAACAA
83499367 CCATAGTTAAGACCTATATACATTACATATATTCAACTATGCCAACAATTTCACCTTCATGAAAG
326 CCATAGTTAAGACCTATATACATTACATATATTCAACTATGCCAACAATTTCACCTTCATGAAAG
*
83499432 GCTAGCTTGCATTCACATAATAACTTTTAATATTTGCCATTTTTGATGGCCTTATTCAAAATGAA
391 GCTAGCTTGCATTCACATAATAACTTTTAATATTAGCCATTTTTGATGGCCTTATTCAAAATGAA
83499497 TCAAATTCTAAAGTAAG
456 TCAAATTCTAAAGTAAG
83499514 C
1 C
83499515 CAACATATTT
Statistics
Matches: 460, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
472 460 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (472 bp):
CAGCATCCAATAAGGGGCACACGGCCAAGGCACGCGCCCATGGCCAGAGGCAGTGTCCTCCACAT
GGCTGAGACACACGGCCGTGTCTCTGCCAGTGTGTTTACTACAATGCAATCTAGCTTGCAAATTT
TACATGCAGGGGACACATGGCCGAACGACACGCCCATAGGGCTGACCGTGTGTCACCCATGGTCT
AGACACACGCCGTGTGTCAACCCATGTGGACAATATAAGGCTATCAACCAAGCCTTTGCCACCCT
GAAACAAAATCTAACATCAACCAACGCATCAAAGATTATCTTAATATGATTTCTCAACCAAACAA
CCATAGTTAAGACCTATATACATTACATATATTCAACTATGCCAACAATTTCACCTTCATGAAAG
GCTAGCTTGCATTCACATAATAACTTTTAATATTAGCCATTTTTGATGGCCTTATTCAAAATGAA
TCAAATTCTAAAGTAAG
Found at i:83500170 original size:48 final size:47
Alignment explanation
Indices: 83500108--83500317 Score: 180
Period size: 46 Copynumber: 4.5 Consensus size: 47
83500098 TGACGCCATA
* * * *
83500108 TCCCAGACAGGTCTTACATTAGTTTGTATATCGCGAGGCTGATGCATG
1 TCCCAGACATGTCTTACACTAGTCT-TATATCTCGAGGCTGATGCATG
* * *
83500156 TCCCAGACATGTCTTACACTAG-CTCTA-GTCTCAATG-TCGATGCATG
1 TCCCAGACATGTCTTACACTAGTCT-TATATCTCGAGGCT-GATGCATG
* * * * *
83500202 TCCTAGACATGCCTTACACT-GGCTTAAATATCTCGTGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGTCTT--ATATCTCGAGGCTGATGCATG
* * * *
83500250 TCCTAGACATGCCTTACACTAGCTCTCATAT-T-GTGGCTGATGCATG
1 TCCCAGACATGTCTTACACTAG-TCTTATATCTCGAGGCTGATGCATG
83500296 TCCCAGACATGTCTTACACTAG
1 TCCCAGACATGTCTTACACTAG
83500318 CACACATATC
Statistics
Matches: 134, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.02
46 66 0.49
47 5 0.04
48 57 0.43
49 1 0.01
50 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (47 bp):
TCCCAGACATGTCTTACACTAGTCTTATATCTCGAGGCTGATGCATG
Found at i:83500172 original size:92 final size:94
Alignment explanation
Indices: 83500002--83500175 Score: 248
Period size: 92 Copynumber: 1.9 Consensus size: 94
83499992 GGGTTAAGAT
*
83500002 GCTGACACCATATCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGTCGATGCCATGTCC
1 GCTGACACCATATCCCAGACATGGTCTTACACTAGCTTTCATATAGCGAGGTCGATGCCATGTCC
83500067 CAGACAGGTCTTACACTGACACACCACAA
66 CAGACAGGTCTTACACTGACACACCACAA
* * * *
83500096 GCTGACGCCATATCCCAGACA-GGTCTTACATTAG-TTTGTATATCGCGAGG-CTGATG-CATGT
1 GCTGACACCATATCCCAGACATGGTCTTACACTAGCTTT-CATATAGCGAGGTC-GATGCCATGT
*
83500157 CCCAGACATGTCTTACACT
64 CCCAGACAGGTCTTACACT
83500176 AGCTCTAGTC
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
92 27 0.38
93 25 0.35
94 20 0.28
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (94 bp):
GCTGACACCATATCCCAGACATGGTCTTACACTAGCTTTCATATAGCGAGGTCGATGCCATGTCC
CAGACAGGTCTTACACTGACACACCACAA
Found at i:83500326 original size:46 final size:46
Alignment explanation
Indices: 83500144--83500326 Score: 185
Period size: 46 Copynumber: 3.9 Consensus size: 46
83500134 TATATCGCGA
* *
83500144 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTC-TCAATGT
1 GGCTGATGCATGTCCCAGACATGCCTTACACTAGCTC-A--CAT-ATTGT
* * * *
83500193 --C-GATGCATGTCCTAGACATGCCTTACACTGGCTTAAATATCTCGT
1 GGCTGATGCATGTCCCAGACATGCCTTACACTAGCTCACATAT-T-GT
* * *
83500238 GGCCGATGCATGTCCTAGACATGCCTTACACTAGCTCTCATATTGT
1 GGCTGATGCATGTCCCAGACATGCCTTACACTAGCTCACATATTGT
* *
83500284 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCACACATAT
1 GGCTGATGCATGTCCCAGACATGCCTTACACTAGCTCACATAT
83500327 CACTCATTAT
Statistics
Matches: 113, Mismatches: 15, Indels: 15
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 3 0.03
46 69 0.61
47 3 0.03
48 35 0.31
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
GGCTGATGCATGTCCCAGACATGCCTTACACTAGCTCACATATTGT
Found at i:83500327 original size:94 final size:94
Alignment explanation
Indices: 83500148--83500327 Score: 220
Period size: 94 Copynumber: 1.9 Consensus size: 94
83500138 TCGCGAGGCT
* * * *
83500148 GATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTCTCAATGTCGATGCATGTCCTAGACATG
1 GATGCATGTCCCAGACATGCCTTACACTAGCTCTAGTATCAATGGCGATGCATGTCCCAGACATG
* **
83500213 CCTTACACTGGCTTAAATATCTCGTGGCC
66 CCTTACACTAGCACAAATATCTCGTGGCC
* **
83500242 GATGCATGTCCTAGACATGCCTTACACTAGCTCTCA-TAT-TGTGGCTGATGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGCCTTACACTAGCTCT-AGTATCAATGGC-GATGCATGTCCCAGACA
* *
83500305 TGTCTTACACTAGCACACATATC
64 TGCCTTACACTAGCACAAATATC
83500328 ACTCATTATC
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
93 3 0.04
94 68 0.94
95 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGCCTTACACTAGCTCTAGTATCAATGGCGATGCATGTCCCAGACATG
CCTTACACTAGCACAAATATCTCGTGGCC
Found at i:83504575 original size:40 final size:40
Alignment explanation
Indices: 83504531--83504722 Score: 228
Period size: 40 Copynumber: 4.8 Consensus size: 40
83504521 TGATATTTGA
*
83504531 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* * *
83504571 TGGAATTGTTTTCGGGCTTAAAGACCCACAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
** ** *
83504611 TGGAATTGTATTTGGGCTTAAATTCCC-TAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
83504650 TGGAATTGTATCCGGGTTTAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGC
* * *
83504690 TGGAATGGTATCAGGG-TTAAAGACCCGCGGGCT
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCT
83504723 TGTGCTAGAA
Statistics
Matches: 131, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 50 0.38
40 81 0.62
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:83512351 original size:40 final size:40
Alignment explanation
Indices: 83512307--83512499 Score: 228
Period size: 40 Copynumber: 4.8 Consensus size: 40
83512297 TGATATTTGA
83512307 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* * *
83512347 TGGAATTGTATTCAGGCTTAAAAACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* * * *
83512387 TGGAATAGTATCCAGGCTTAAAGACCCGTAGGCTATATGT
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* * * * *
83512427 TGGAATTGTATCCGAGTTTAAAGACCGGAAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGC
* * *
83512467 TGGAATGGTATCAGGG-TTAAAGACCCGCGGGCT
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCT
83512500 TGTGCTAGAA
Statistics
Matches: 130, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 15 0.12
40 115 0.88
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:83516444 original size:42 final size:42
Alignment explanation
Indices: 83516372--83516463 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
83516362 TGGCCCATAG
* * ** *
83516372 GCCCATTTCAATATCACGTGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
83516414 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
83516456 GCCCATTT
1 GCCCATTT
83516464 GGGGAGATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:83516686 original size:26 final size:26
Alignment explanation
Indices: 83516596--83516757 Score: 206
Period size: 26 Copynumber: 6.3 Consensus size: 26
83516586 CTGGAGGCCT
*
83516596 AGCCTCTTTT-AAT-AACTAGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
83516620 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
83516645 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*** *
83516671 AGCCCTTTTTGGTAAACTGGGGCACA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
83516697 AGCCATTTTCAATAAACTGAGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
83516723 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
83516749 AGCCCTTTT
1 AGCCCTTTT
83516758 GCACTTCCTC
Statistics
Matches: 118, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
23 5 0.04
24 5 0.04
25 32 0.27
26 76 0.64
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:83516832 original size:20 final size:20
Alignment explanation
Indices: 83516807--83516873 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
83516797 TTATGAATAC
83516807 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
83516827 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
83516847 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
83516867 ATCATGT
1 ATCATGT
83516874 ATATCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:83517716 original size:54 final size:55
Alignment explanation
Indices: 83517640--83517767 Score: 133
Period size: 54 Copynumber: 2.4 Consensus size: 55
83517630 CATCCTACAA
* * **
83517640 GGGTGTTTTGGTAA-ATCTACAAATCAAG-GGTAT-TTCTGTAATTTTGTAAA-TCAG
1 GGGTGTTTTGGTAATTTCTACAAA-CAAGTGGTATGTT-GGTAATTTTACAAACT-AG
* *
83517694 GGGTATTTTGGTAATTTC-ACAAACCAGTGGTATGTTGGTAATTTTACAAACTAG
1 GGGTGTTTTGGTAATTTCTACAAACAAGTGGTATGTTGGTAATTTTACAAACTAG
83517748 GGGTGTTTTGGTAA-TTCTAC
1 GGGTGTTTTGGTAATTTCTAC
83517768 CCTATAGGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
53 6 0.10
54 51 0.82
55 5 0.08
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.39
Consensus pattern (55 bp):
GGGTGTTTTGGTAATTTCTACAAACAAGTGGTATGTTGGTAATTTTACAAACTAG
Found at i:83517725 original size:27 final size:27
Alignment explanation
Indices: 83517691--83517763 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
83517681 TTTTGTAAAT
83517691 CAGGGGTATTTTGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTCACAAAC
* * *
83517718 CAGTGGTATGTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTCACAAAC
* *
83517745 TAGGGGTGTTTTGGTAATT
1 CAGGGGTATTTTGGTAATT
83517764 CTACCCTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTCACAAAC
Found at i:83517833 original size:27 final size:27
Alignment explanation
Indices: 83517800--83517879 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
83517790 TTCACAATTG
* * *
83517800 AGGGTAAAACGGTAATTTTGTAAATCA
1 AGGGTAAAACAGTAATTCTATAAATCA
*
83517827 AGGGTAAAATAGTAATTCTATAAATCA
1 AGGGTAAAACAGTAATTCTATAAATCA
*
83517854 AGGGTAAAACAATAATTCTATAAATC
1 AGGGTAAAACAGTAATTCTATAAATC
83517880 GAGGATACTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.29
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTCTATAAATCA
Found at i:83518077 original size:27 final size:26
Alignment explanation
Indices: 83517811--83518333 Score: 207
Period size: 27 Copynumber: 19.3 Consensus size: 26
83517801 GGGTAAAACG
* * **
83517811 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGT-ATTTA
* * ***
83517838 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGT-ATTTA
* * * *
83517865 ATAATTCTATAAATCGAGGATACTTTG
1 GTAATTTTATAAATCGAGGGTA-TTTA
83517892 GTAATTTT-TACAAGTCGAGGGTATTTCA
1 GTAATTTTATA-AA-TCGAGGGTATTT-A
* * *
83517920 ATAATTTTACAAATCAGGGGGTATTTTA
1 GTAATTTTATAAATC-GAGGGTA-TTTA
* *
83517948 GTAATTTTACAAA-CCAGGGATATTTTA
1 GTAATTTTATAAATCGAGGG-TA-TTTA
* * *
83517975 GTAATTTTACAAA-CCAGGGCTATTGTG
1 GTAATTTTATAAATCGAGGG-TATT-TA
** *
83518002 GTAATTTTATTGATCGAGGGTATTTTG
1 GTAATTTTATAAATCGAGGGTA-TTTA
* * * *
83518029 GTAATTTTGTAAACCAAAGGTATTTCA
1 GTAATTTTATAAATCGAGGGTATTT-A
* **
83518056 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGT-ATTTA
* * **
83518083 GTAATTTTGTAAATTGAGGGTA-AGA
1 GTAATTTTATAAATCGAGGGTATTTA
* ** *
83518108 CGGTAATTCTATAAATCGAGGGTAAAATG
1 --GTAATTTTATAAATCGAGGGT-ATTTA
* ** *
83518137 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGT-ATTTA
* **
83518164 GTAATTCTATCTTAT--AGGAGTATTTCA
1 GTAATTTTAT-AAATCGAGG-GTATTT-A
*
83518191 GTAATTTTACAAAATCGAGGGTATTTCA
1 GTAATTTTA-TAAATCGAGGGTATTT-A
** * *
83518219 GTAATTTTGCAAA-CTGAGGTTATTTCG
1 GTAATTTTATAAATC-GAGGGTATTT-A
*
83518246 GTAATTTT-TCAAATCGAGGATATTTA
1 GTAATTTTAT-AAATCGAGGGTATTTA
* * *
83518272 GGTAATTTTATAAATTGGGGGTACTTTG
1 -GTAATTTTATAAATCGAGGGTA-TTTA
* *
83518300 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTATAAATCGAGGGTATTT-A
83518327 GTAATTT
1 GTAATTT
83518334 GGTAAACTAA
Statistics
Matches: 396, Mismatches: 70, Indels: 60
0.75 0.13 0.11
Matches are distributed among these distances:
25 2 0.01
26 21 0.05
27 296 0.75
28 69 0.17
29 8 0.02
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.37
Consensus pattern (26 bp):
GTAATTTTATAAATCGAGGGTATTTA
Found at i:83524911 original size:46 final size:44
Alignment explanation
Indices: 83524858--83525031 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 44
83524848 TGGTTGAGCA
83524858 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGTGAATG
* * *
83524904 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGTGAA-T--G
* *
83524949 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAA-C
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGTGAATG
* * *
83524996 ACCCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTAG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTAG
83525032 GGGCGGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 7 0.07
46 56 0.52
47 29 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGTGAATG
Found at i:83524928 original size:20 final size:20
Alignment explanation
Indices: 83524858--83524928 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 20
83524848 TGGTTGAGCA
83524858 TCCGAACTCGTTGAGTTGAG
1 TCCGAACTCGTTGAGTTGAG
**
83524878 TCCGAGTTCACTTATTGA-TGTGAATG
1 TCCGA----ACTCGTTGAGT-TG-A-G
83524904 TCCGAACTCGTTGAGTTGAG
1 TCCGAACTCGTTGAGTTGAG
83524924 TCCGA
1 TCCGA
83524929 GTTCGTGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
20 11 0.28
21 1 0.03
22 9 0.23
23 2 0.05
24 9 0.23
25 1 0.03
26 6 0.15
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (20 bp):
TCCGAACTCGTTGAGTTGAG
Found at i:83525014 original size:93 final size:93
Alignment explanation
Indices: 83524855--83525025 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
83524845 GGATGGTTGA
** * ** *
83524855 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATCACCCAACTCGTTGAGT
83524920 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
83524948 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAA-CACCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATCACCCAA-CTCGTTGAG
*
83525012 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
83525026 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATCACCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:83544274 original size:56 final size:56
Alignment explanation
Indices: 83544214--83544347 Score: 214
Period size: 56 Copynumber: 2.4 Consensus size: 56
83544204 TCCTAGATAG
* ** * *
83544214 GGTCTTACTCACACACATATGTCGGAGTCACATATCGATGCCAACGTATTAAAGGT
1 GGTCTTACTCACACACATATATCAAAGTCACATATAGATGCCAACGTAGTAAAGGT
*
83544270 GGTCTTACTCACACACATATATCAAAGTCACATATAGATGCCAACGTAGTAAATGT
1 GGTCTTACTCACACACATATATCAAAGTCACATATAGATGCCAACGTAGTAAAGGT
83544326 GGTCTTACTCACACACATATAT
1 GGTCTTACTCACACACATATAT
83544348 TGATGCCATG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 72 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCAAAGTCACATATAGATGCCAACGTAGTAAAGGT
Found at i:83551135 original size:49 final size:50
Alignment explanation
Indices: 83551055--83551300 Score: 280
Period size: 49 Copynumber: 4.9 Consensus size: 50
83551045 ATCTATTGTG
* *
83551055 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * ** *
83551105 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * * **
83551155 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
83551205 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGCATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
83551255 -GGTCGCATGTGTAATACTAAGTGCAGGCTACTACGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATA
83551301 GCCTTGTCTA
Statistics
Matches: 164, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 80 0.49
50 46 0.28
51 38 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:83554448 original size:5 final size:5
Alignment explanation
Indices: 83554438--83554463 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
83554428 TTAAAATCAA
83554438 CTTTT CTTTT CTTTT CTTTT CTTTT C
1 CTTTT CTTTT CTTTT CTTTT CTTTT C
83554464 GTATAACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
CTTTT
Found at i:83559187 original size:43 final size:42
Alignment explanation
Indices: 83559117--83559275 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
83559107 AGCTCGTACA
* * * * *
83559117 ATGCCAACGTCCCAGACGTGGTATTACATGTAATCAAATATGG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATA-CG
* * ** **
83559160 CTGCCACTGTTGCAGACATGGTCTTACACAAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATACG
*
83559202 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAATTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AATCA-AATACG
** **
83559246 ATGCCAACATCCCAGATGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
83559276 ATAACACATA
Statistics
Matches: 92, Mismatches: 22, Indels: 3
0.79 0.19 0.03
Matches are distributed among these distances:
42 26 0.28
43 35 0.38
44 31 0.34
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATACG
Found at i:83559268 original size:44 final size:43
Alignment explanation
Indices: 83559172--83559276 Score: 140
Period size: 44 Copynumber: 2.4 Consensus size: 43
83559162 GCCACTGTTG
**
83559172 CAGACATGGTCTTACAC-AAAATCAAATACGATGCCAATGTCC
1 CAGACATGGTCTTACACGAAAATCAAATACGATGCCAACATCC
* *
83559214 CAGACATGGTCTTACACGTAAATCATAATTCGATGCCAACATCC
1 CAGACATGGTCTTACACGAAAATCA-AATACGATGCCAACATCC
**
83559258 CAGATGTGGTCTTACACGA
1 CAGACATGGTCTTACACGA
83559277 TAACACATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 17 0.31
43 6 0.11
44 31 0.57
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
CAGACATGGTCTTACACGAAAATCAAATACGATGCCAACATCC
Found at i:83566181 original size:40 final size:40
Alignment explanation
Indices: 83566082--83566261 Score: 170
Period size: 40 Copynumber: 4.5 Consensus size: 40
83566072 AATCAAGCAT
** ** * *
83566082 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
83566120 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
83566160 TTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
83566200 CTT--GGATCTTAGTCCGGATGTAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
83566240 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
83566262 CATTCGAGTA
Statistics
Matches: 112, Mismatches: 24, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
38 13 0.12
39 31 0.28
40 53 0.47
41 12 0.11
42 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:83570791 original size:43 final size:43
Alignment explanation
Indices: 83570686--83570825 Score: 139
Period size: 42 Copynumber: 3.3 Consensus size: 43
83570676 AACGTTCCAG
* *
83570686 ACGTGGTCTTACATGTAAA-CAAATATCGATGCTACTGTCCTAGA
1 ACGTGGTCTTACATGTAAATCAAATA-CGATGCCAATGTCCTA-A
83570730 TA-G-GGTCTTACATG-AAATCAAATACGATGCCAATGTCCTAA
1 -ACGTGGTCTTACATGTAAATCAAATACGATGCCAATGTCCTAA
* * *
83570771 ACGTGGTCTTACACGTAAATCATAAGT-CGATGCCAACGT-CTCAG
1 ACGTGGTCTTACATGTAAATCA-AA-TACGATGCCAATGTCCT-AA
83570815 ACGTGGTCTTA
1 ACGTGGTCTTA
83570826 AATGATAACA
Statistics
Matches: 83, Mismatches: 5, Indels: 15
0.81 0.05 0.15
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 27 0.33
43 25 0.30
44 26 0.31
45 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (43 bp):
ACGTGGTCTTACATGTAAATCAAATACGATGCCAATGTCCTAA
Found at i:83570819 original size:44 final size:42
Alignment explanation
Indices: 83570686--83570825 Score: 112
Period size: 43 Copynumber: 3.3 Consensus size: 42
83570676 AACGTTCCAG
* *
83570686 ACGTGGTCTTACATGTAAA-CAAATATCGATG-CTACTGTCCTAGA
1 ACGTGGTCTTACACG-AAATCAAATA-CGATGCCAAC-GTCCTA-A
* *
83570730 TA-G-GGTCTTACATGAAATCAAATACGATGCCAATGTCCTAA
1 -ACGTGGTCTTACACGAAATCAAATACGATGCCAACGTCCTAA
*
83570771 ACGTGGTCTTACACGTAAATCATAAGT-CGATGCCAACGT-CTCAG
1 ACGTGGTCTTACACG-AAATCA-AA-TACGATGCCAACGTCCT-AA
83570815 ACGTGGTCTTA
1 ACGTGGTCTTA
83570826 AATGATAACA
Statistics
Matches: 82, Mismatches: 5, Indels: 17
0.79 0.05 0.16
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 24 0.29
43 27 0.33
44 26 0.32
45 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (42 bp):
ACGTGGTCTTACACGAAATCAAATACGATGCCAACGTCCTAA
Found at i:83572524 original size:17 final size:17
Alignment explanation
Indices: 83572494--83572530 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
83572484 ATGCACTAAC
* *
83572494 ATGAACATGTAATGACA
1 ATGAAAATGCAATGACA
83572511 ATGAAAATGCAATGACA
1 ATGAAAATGCAATGACA
83572528 ATG
1 ATG
83572531 TATACTTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.22
Consensus pattern (17 bp):
ATGAAAATGCAATGACA
Found at i:83573009 original size:24 final size:24
Alignment explanation
Indices: 83572969--83573017 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
83572959 TTCTTTTTCT
* *
83572969 TTCTTCTTTTCAGCAACTT-CTTC
1 TTCTTCTTTGCAACAACTTCCTTC
83572992 TTCTTCTTTAGCAACAACTTCCTTC
1 TTCTTCTTT-GCAACAACTTCCTTC
83573017 T
1 T
83573018 CAATAACAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 9 0.41
24 8 0.36
25 5 0.23
ACGTcount: A:0.16, C:0.31, G:0.04, T:0.49
Consensus pattern (24 bp):
TTCTTCTTTGCAACAACTTCCTTC
Found at i:83573012 original size:21 final size:20
Alignment explanation
Indices: 83572969--83573017 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
83572959 TTCTTTTTCT
**
83572969 TTCTTCTTTTCAGCAACTTC
1 TTCTTCTTTTCAGCAACAAC
*
83572989 TTCTTCTTCTTTAGCAACAAC
1 TTCTTCTT-TTCAGCAACAAC
83573010 TTCCTTCT
1 TT-CTTCT
83573018 CAATAACAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 8 0.33
21 11 0.46
22 5 0.21
ACGTcount: A:0.16, C:0.31, G:0.04, T:0.49
Consensus pattern (20 bp):
TTCTTCTTTTCAGCAACAAC
Found at i:83573848 original size:21 final size:20
Alignment explanation
Indices: 83573824--83573862 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
83573814 GAGTACTTTG
83573824 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
83573845 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
83573863 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:83579617 original size:28 final size:28
Alignment explanation
Indices: 83579585--83579677 Score: 105
Period size: 28 Copynumber: 3.3 Consensus size: 28
83579575 GCCCCTTTAG
* *
83579585 GCCCAATCTCATTCATATGACCCATCTA
1 GCCCAATCACATTCATATGACCCATCAA
*
83579613 GCCCAATCACATTCATATGGCCCATCAA
1 GCCCAATCACATTCATATGACCCATCAA
* * * * *
83579641 GCCCAATCACTTTTATAAGGCCCGTCAA
1 GCCCAATCACATTCATATGACCCATCAA
*
83579669 GCCTAATCA
1 GCCCAATCA
83579678 AAATCATAGT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.30, C:0.34, G:0.11, T:0.25
Consensus pattern (28 bp):
GCCCAATCACATTCATATGACCCATCAA
Found at i:83580218 original size:21 final size:21
Alignment explanation
Indices: 83580189--83580228 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
83580179 AACTAAACAC
*
83580189 AAGTGACTCGCAAATCATCTT
1 AAGTCACTCGCAAATCATCTT
**
83580210 AAGTCACTCTTAAATCATC
1 AAGTCACTCGCAAATCATC
83580229 CATGACCACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (21 bp):
AAGTCACTCGCAAATCATCTT
Found at i:83582360 original size:27 final size:27
Alignment explanation
Indices: 83582300--83582406 Score: 115
Period size: 27 Copynumber: 4.0 Consensus size: 27
83582290 CCTTAATCGA
* * * *
83582300 TAAAATAACTATTTTTCCCCTATATGG
1 TAAAATGACTGTTTTGCCCCTATGTGG
*
83582327 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCCTATGTGG
* * * *
83582354 TAAAATGATTGTTTTGCCCTTATGAGA
1 TAAAATGACTGTTTTGCCCCTATGTGG
* *
83582381 TAAGATGACTGTTTTACCCCTATGTG
1 TAAAATGACTGTTTTGCCCCTATGTG
83582407 TAGTATATAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCCTATGTGG
Found at i:83583090 original size:18 final size:17
Alignment explanation
Indices: 83583062--83583095 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
83583052 GACCTTAGCC
83583062 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
83583079 CATTATCAGAATTAGAA
1 CATTA-CAGAATAAGAA
83583096 TCAAAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:83583095 original size:6 final size:6
Alignment explanation
Indices: 83583083--83583145 Score: 74
Period size: 6 Copynumber: 10.3 Consensus size: 6
83583073 AAGAAACATT
* * *
83583083 ATCAGA ATTAGA ATCAAA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
83583132 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
83583146 GTGAATGCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.02
6 43 0.90
7 3 0.06
8 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:83583743 original size:78 final size:78
Alignment explanation
Indices: 83583605--83583826 Score: 336
Period size: 78 Copynumber: 2.8 Consensus size: 78
83583595 AGCCCACAAT
* * * *
83583605 ATCGATACGAAGCCCACAATAATGGCACACAGCCTTTGGTAACATGATCGGCACTCAGCCATCGA
1 ATCGGTACAAAGCCCACAATAACGGCACACAGCCTTCGGTAACATGATCGGCACTCAGCCATCGA
*
83583670 TAATGGGTCTATA
66 TAACGGGTCTATA
* * *
83583683 ATCGGTACAAAGCCCACAATAACGACACACAGCCTTCGGTAATATGATCGGCACTCAGCCATTGA
1 ATCGGTACAAAGCCCACAATAACGGCACACAGCCTTCGGTAACATGATCGGCACTCAGCCATCGA
83583748 TAACGGGTCTATA
66 TAACGGGTCTATA
* * * *
83583761 ATTGGCACAAAGCCCACAATAGCGGCACACAGCCTTCGGTAACATAATCGGCACTCAGCCATCGA
1 ATCGGTACAAAGCCCACAATAACGGCACACAGCCTTCGGTAACATGATCGGCACTCAGCCATCGA
83583826 T
66 T
83583827 CGGTCAACAG
Statistics
Matches: 129, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 129 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (78 bp):
ATCGGTACAAAGCCCACAATAACGGCACACAGCCTTCGGTAACATGATCGGCACTCAGCCATCGA
TAACGGGTCTATA
Found at i:83583897 original size:27 final size:26
Alignment explanation
Indices: 83583832--83583914 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
83583822 TCGATCGGTC
* *
83583832 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
83583858 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
83583885 AA-ATGATATTTGTGGCATAGCCACAAG
1 AACA-GATA-TTGTGGCAGAGCCACCAG
83583912 AAC
1 AAC
83583915 GCTTCCTCCA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.02
26 6 0.12
27 42 0.86
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:83584553 original size:27 final size:27
Alignment explanation
Indices: 83584138--83584542 Score: 553
Period size: 27 Copynumber: 15.0 Consensus size: 27
83584128 GGGGTAAAAT
* * *
83584138 GGTAATTTTATCCC-ACAAGGGTATCTC
1 GGTAATTCTA-CCCTACAGGGGTATTTC
83584165 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
83584192 AGTAATTCTACCTTACAGGGGTACTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
83584219 GGTAATTCCACCCTATAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83584246 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83584273 GGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83584300 AGTAATTCTACCCTACAGGGGTATGTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83584327 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83584354 GGTAATTCTTCCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83584381 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83584408 AGTAATT-TGACCCTACAGAGGTATTTC
1 GGTAATTCT-ACCCTACAGGGGTATTTC
*
83584435 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
83584462 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83584489 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83584516 GTTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
83584543 AATATTTCTA
Statistics
Matches: 331, Mismatches: 44, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
26 4 0.01
27 326 0.98
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:83584564 original size:27 final size:27
Alignment explanation
Indices: 83584534--83584595 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
83584524 TACCCTACAG
83584534 GGGTATTTCAAT-ATTTCTACAAATCAA
1 GGGTATTTCAATAATTTC-ACAAATCAA
* *
83584561 GGGTATTTCGATAATTTCACAAATCAG
1 GGGTATTTCAATAATTTCACAAATCAA
83584588 GGGTATTT
1 GGGTATTT
83584596 TGGTAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAATAATTTCACAAATCAA
Found at i:83584589 original size:81 final size:82
Alignment explanation
Indices: 83584156--83584603 Score: 495
Period size: 81 Copynumber: 5.5 Consensus size: 82
83584146 TATCCCACAA
* * * *
83584156 GGGTATCTCG-GTAA-TTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTACTTC
1 GGGTATTTCGAGTAATTTC-ACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
** * *
83584219 GGTAATTCCACCCTATAG
65 AATAATTCTACCCTACAG
* * *
83584237 AGGTATTTC-AGTAA-TTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGCATTTC
1 GGGTATTTCGAGTAATTTC-ACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
83584300 AGTAATTCTACCCTACAG
65 AATAATTCTACCCTACAG
* * *
83584318 GGGTATGTCGA-TAA-TTCTACCCTACAGGGGTATTTCGGTAATTCTTCCCTATAGGGGTATTTC
1 GGGTATTTCGAGTAATTTC-ACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
83584381 GATAATTCTACCCTACAG
65 AATAATTCTACCCTACAG
* * * * *
83584399 GGGTATTT-TAGTAATTTGACCCTACAGAGGTATTTCGGTAATTCTACCATACAGGGGTATTTCG
1 GGGTATTTCGAGTAATTTCACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
83584463 GTAATTCTACCCTACAG
66 ATAATTCTACCCTACAG
* *
83584480 GGGTATTTC-AGTAATTTTACCCTACAGGGGTATTTCGTTAATTCTACCCTACAGGGGTATTTCA
1 GGGTATTTCGAGTAATTTCACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* ** *
83584544 ATATTTCTA-CAAATCAA
66 ATAATTCTACCCTA-CAG
** *
83584561 GGGTATTTCGA-TAATTTCA-CAAATCAGGGGTATTTTGGTAATT
1 GGGTATTTCGAGTAATTTCACCCTA-CAGGGGTATTTCGGTAATT
83584604 TTACAAGCCA
Statistics
Matches: 318, Mismatches: 41, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
80 5 0.02
81 309 0.97
82 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (82 bp):
GGGTATTTCGAGTAATTTCACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
ATAATTCTACCCTACAG
Found at i:83584671 original size:26 final size:27
Alignment explanation
Indices: 83584546--83584689 Score: 191
Period size: 27 Copynumber: 5.3 Consensus size: 27
83584536 GTATTTCAAT
* * * *
83584546 ATTTCTACAAATCAAGGGTATTTCGATA
1 ATTT-TACAAACCAGGGGTATTTTGGTA
* *
83584574 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
*
83584601 ATTTTACAAGCCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
83584628 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
* *
83584655 ATTTT-CAAACTATGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
83584681 ATTTTACAA
1 ATTTTACAA
83584690 GTCGAGAGTA
Statistics
Matches: 105, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 24 0.23
27 77 0.73
28 4 0.04
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
ATTTTACAAACCAGGGGTATTTTGGTA
Found at i:83584719 original size:53 final size:53
Alignment explanation
Indices: 83584561--83584710 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 53
83584551 TACAAATCAA
* * * * * * * * *
83584561 GGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTACAAACCAGGAGTATTTTAGTAATTTT-CAAACTAT
* *
83584615 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTCAAACTAT
1 GGGTATTTTGGTAATTTTACAAACCAGGAGTATTTTAGTAATTTTCAAACTAT
**
83584668 GGGTATTTTGGTAATTTTACAAGTC-GAGAGTA-TTTAGTAATTT
1 GGGTATTTTGGTAATTTTACAAACCAG-GAGTATTTTAGTAATTT
83584711 GGTAAACTAA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
52 11 0.13
53 32 0.38
54 41 0.49
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACCAGGAGTATTTTAGTAATTTTCAAACTAT
Found at i:83617904 original size:31 final size:31
Alignment explanation
Indices: 83617866--83617925 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
83617856 TGAGCAAGAG
*
83617866 ATTGTGCAAAATCCAAGACATAGTAACACAA
1 ATTGTGCAAAATCCAAGACATAGCAACACAA
**
83617897 ATTGTGCAAAATCTGAGACATAGCAACAC
1 ATTGTGCAAAATCCAAGACATAGCAACAC
83617926 CTTAGCTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.20
Consensus pattern (31 bp):
ATTGTGCAAAATCCAAGACATAGCAACACAA
Found at i:83625193 original size:28 final size:28
Alignment explanation
Indices: 83625161--83625250 Score: 144
Period size: 28 Copynumber: 3.2 Consensus size: 28
83625151 TGGGAATTAG
* * * *
83625161 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCATGATGGGCCATGTGAACGAGA
83625189 TTGGGCATGATGGGCCATGTGAACGAGA
1 TTGGGCATGATGGGCCATGTGAACGAGA
83625217 TTGGGCATGATGGGCCATGTGAACGAGA
1 TTGGGCATGATGGGCCATGTGAACGAGA
83625245 TTGGGC
1 TTGGGC
83625251 CTAAAGGGGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.22, C:0.14, G:0.39, T:0.24
Consensus pattern (28 bp):
TTGGGCATGATGGGCCATGTGAACGAGA
Found at i:83627063 original size:29 final size:28
Alignment explanation
Indices: 83626989--83627106 Score: 100
Period size: 29 Copynumber: 4.2 Consensus size: 28
83626979 TACATACATG
*
83626989 CATATGGCCCACTAGGCCCAATCTTATT
1 CATATGGCCCACTAGGCCCAATCATATT
* *
83627017 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCA-ATCATATT
* *
83627046 CTTATGGCCCACTAGGCCGAATTC-TCATT
1 CATATGGCCCACTAGGCCCAA-TCAT-ATT
* *
83627075 CATATGCCCCA-TAGCCCCAAATCATATT
1 CATATGGCCCACTAGGCCC-AATCATATT
83627103 -ATAT
1 CATAT
83627107 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 11, Indels: 15
0.73 0.11 0.15
Matches are distributed among these distances:
27 4 0.06
28 29 0.40
29 39 0.54
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATCATATT
Found at i:83627100 original size:57 final size:57
Alignment explanation
Indices: 83626991--83627102 Score: 136
Period size: 57 Copynumber: 2.0 Consensus size: 57
83626981 CATACATGCA
* * * * **
83626991 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCTCATTCAAATGCCCCATCAGCCCCAAATCATATTCT
* *
83627048 TATGGCCCACTAGGCCGAATTCTCATTCATATGCCCCAT-AGCCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCTCATTCAAATGCCCCATCAGCCCCAAATCATATT
83627103 ATATTCATGC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
57 30 0.65
58 16 0.35
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCTCATTCAAATGCCCCATCAGCCCCAAATCATATTCT
Found at i:83627331 original size:8 final size:8
Alignment explanation
Indices: 83627317--83627367 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
83627307 CGTAGCCAAA
83627317 CTTTT-GG
1 CTTTTCGG
*
83627324 CTTTTTGG
1 CTTTTCGG
83627332 CATTTT-GG
1 C-TTTTCGG
*
83627340 CTTTTCAG
1 CTTTTCGG
83627348 CTTTTCGG
1 CTTTTCGG
*
83627356 CATTTCGG
1 CTTTTCGG
83627364 CTTT
1 CTTT
83627368 CGTCGATTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
7 9 0.24
8 24 0.65
9 4 0.11
ACGTcount: A:0.06, C:0.20, G:0.22, T:0.53
Consensus pattern (8 bp):
CTTTTCGG
Found at i:83628611 original size:16 final size:16
Alignment explanation
Indices: 83628592--83628622 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83628582 AAAATTCAAA
*
83628592 ATTTTGGGATTTTTGG
1 ATTTCGGGATTTTTGG
83628608 ATTTCGGGATTTTTG
1 ATTTCGGGATTTTTG
83628623 AGGCGTTACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.29, T:0.55
Consensus pattern (16 bp):
ATTTCGGGATTTTTGG
Found at i:83628945 original size:27 final size:27
Alignment explanation
Indices: 83628902--83629376 Score: 444
Period size: 27 Copynumber: 17.7 Consensus size: 27
83628892 GTAATAAAAG
* * *
83628902 AAAATTACCTAAGTACCCCCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
**
83628929 AAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* *
83628956 AAAATTATCAAAATACCCTCGA-TTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* ** *
83628982 GAAATTACTAAAATACCCTTGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
**
83629009 AAAATTACTAAAATACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
*
83629036 AAAATTACCGAAACACCCT-GAATTTGT
1 AAAATTACCGAAATACCCTCG-ATTTGT
* *
83629063 AAAATTATCGAAACACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* *
83629090 AAAATTACTGAAATACTCTCGATTATG-
1 AAAATTACCGAAATACCCTCGATT-TGT
** *
83629117 -AAATTACTAAAATACCCTCAATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* *
83629143 AAAATTATCGAAATACCCCCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* *
83629170 GAAATTACCGAAACACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * * *
83629197 GAAATTATCAAAACACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
*
83629224 AAAATTATCGAAATACCCTC-AGTTTGT
1 AAAATTACCGAAATACCCTCGA-TTTGT
* *
83629251 AAAATTACCGAAACACCCCCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * * *
83629278 AAAATTATCAAAATACCCTTG-TAATGT
1 AAAATTACCGAAATACCCTCGAT-TTGT
** *
83629305 AAAATTATTGAAATACCCTCG-TAGTGT
1 AAAATTACCGAAATACCCTCGAT-TTGT
* * *
83629332 AAAATTACTGAAATACCCTTG-TAGTGT
1 AAAATTACCGAAATACCCTCGAT-TTGT
* *
83629359 AAAATGACCGACATACCC
1 AAAATTACCGAAATACCC
83629377 CTGTAGGGTA
Statistics
Matches: 381, Mismatches: 58, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
25 2 0.01
26 45 0.12
27 330 0.87
28 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCGATTTGT
Found at i:83629098 original size:81 final size:81
Alignment explanation
Indices: 83628915--83629350 Score: 489
Period size: 81 Copynumber: 5.4 Consensus size: 81
83628905 ATTACCTAAG
* **
83628915 TACCCCCGATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTATCAAAATACCCTCG-A-
1 TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCCT-GAAT
* *
83628978 TTGTGAAATTA-CTAAAA
65 TTGTAAAATTATC-GAAA
* ** * * *
83628995 TACCCTTGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTGAATT
1 TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTGAATT
83629060 TGTAAAATTATCGAAA
66 TGTAAAATTATCGAAA
* * * *
83629076 CACCCTCGATTTGTAAAATTACTGAAATACTCTCGATTATG--AAATTA-CTAAAATACCCTCAA
1 TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATT-TGTAAAATTATC-AAAATACCCTGAA
83629138 TTTGTAAAATTATCGAAA
64 TTTGTAAAATTATCGAAA
* * * * *
83629156 TACCCCCGATTTGTGAAATTACCGAAACACCCTCGATTTGTGAAATTATCAAAACACCCTCG-AT
1 TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCCT-GAAT
83629220 TTGTAAAATTATCGAAA
65 TTGTAAAATTATCGAAA
* *
83629237 TACCCTC-AGTTTGTAAAATTACCGAAACACCCCCGATTTGTAAAATTATCAAAATACCCTTGTA
1 TACCCTCGA-TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCC-TG-A
*
83629301 A--TGTAAAATTATTGAAA
63 ATTTGTAAAATTATCGAAA
* *
83629318 TACCCTCG-TAGTGTAAAATTACTGAAATACCCT
1 TACCCTCGAT-TTGTAAAATTACCGAAATACCCT
83629351 TGTAGTGTAA
Statistics
Matches: 305, Mismatches: 36, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
79 4 0.01
80 120 0.39
81 175 0.57
82 5 0.02
83 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTGAATT
TGTAAAATTATCGAAA
Found at i:83629123 original size:134 final size:134
Alignment explanation
Indices: 83628902--83629296 Score: 517
Period size: 134 Copynumber: 2.9 Consensus size: 134
83628892 GTAATAAAAG
* ** * * * ** *
83628902 AAAATTACCTAAGTACCCCCGATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTATCAA
1 AAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATCGA
*
83628967 AATACCCTCGATTGTGAAATTACTAAAATACCCTTGATTTGTAAAATTA-CTAAAATACCCTCGA
66 AATACCCTCGATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCGA
83629031 TTTGT
130 TTTGT
83629036 AAAATTACCGAAACACCCT-GAATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTA-CT
1 AAAATTACCGAAACACCCTCG-ATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATC-
* * * * *
83629099 GAAATACTCTCGATTATGAAATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCCCG
64 GAAATACCCTCGATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCG
83629164 ATTTGT
129 ATTTGT
* * *
83629170 GAAATTACCGAAACACCCTCGATTTGTGAAATTATCAAAACACCCTCGATTTGTAAAATTATCGA
1 AAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATCGA
* * ** * *
83629235 AATACCCTCAGTTTGTAAAATTACCGAAACACCCCCGATTTGTAAAATTATCAAAATACCCT
66 AATACCCTC-GATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCT
83629297 TGTAATGTAA
Statistics
Matches: 226, Mismatches: 29, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
133 2 0.01
134 179 0.79
135 45 0.20
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (134 bp):
AAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATCGA
AATACCCTCGATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGAT
TTGT
Found at i:83629388 original size:54 final size:54
Alignment explanation
Indices: 83629288--83629390 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
83629278 AAAATTATCA
* ** *
83629288 AAATACCCTTGTAATGTAAAATTATTGAAATACCCTCGTAGTGTAAAATTACTG
1 AAATACCCTTGTAATGTAAAATGACCGAAATACCCTCGTAGGGTAAAATTACTG
* *
83629342 AAATACCCTTGTAGTGTAAAATGACCGACATACCC-CTGTAGGGTAAAAT
1 AAATACCCTTGTAATGTAAAATGACCGAAATACCCTC-GTAGGGTAAAAT
83629391 GATTATTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 1 0.02
54 41 0.98
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (54 bp):
AAATACCCTTGTAATGTAAAATGACCGAAATACCCTCGTAGGGTAAAATTACTG
Found at i:83631781 original size:28 final size:29
Alignment explanation
Indices: 83631741--83631857 Score: 184
Period size: 29 Copynumber: 4.1 Consensus size: 29
83631731 ATTGCATGAC
*
83631741 TATGAATGTGA-TTGGGCCTAATGGGCCA
1 TATGAATGCGATTTGGGCCTAATGGGCCA
83631769 TATGAATGCGATTTGGGCCTAATGGGCCA
1 TATGAATGCGATTTGGGCCTAATGGGCCA
83631798 TATGAATGCGATTTGGGCCTAATGGGCCA
1 TATGAATGCGATTTGGGCCTAATGGGCCA
* * *
83631827 TATGAAAGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGCGATTTGGGCCTAATGGGCCA
83631855 TAT
1 TAT
83631858 ACATGTATGT
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
28 29 0.35
29 55 0.65
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TATGAATGCGATTTGGGCCTAATGGGCCA
Found at i:83631852 original size:57 final size:57
Alignment explanation
Indices: 83631741--83631857 Score: 182
Period size: 57 Copynumber: 2.1 Consensus size: 57
83631731 ATTGCATGAC
* * *
83631741 TATGAATGTGATTGGGCCTAATGGGCCATATGAATGCGATTTGGGCCTAATGGGCCA
1 TATGAATGCGATTGGGCCTAATGGGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
*
83631798 TATGAATGCGATTTGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGCGA-TTGGGCCTAATGGGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
83631855 TAT
1 TAT
83631858 ACATGTATGT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 29 0.53
58 26 0.47
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (57 bp):
TATGAATGCGATTGGGCCTAATGGGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
Found at i:83633082 original size:17 final size:18
Alignment explanation
Indices: 83633049--83633082 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83633039 TTTAAAGAAG
83633049 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
83633067 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
83633083 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:83636415 original size:29 final size:28
Alignment explanation
Indices: 83636346--83636434 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 28
83636336 ATTGCATGAC
* * * *
83636346 TATGAATGTGATTGGGCCTAATAGGCCG
1 TATGAAAGAGATTGGGCCTAATGGGCCA
* * *
83636374 TATCAATGTGATTTGGGCCTAATGGGCCA
1 TATGAAAGAGA-TTGGGCCTAATGGGCCA
*
83636403 TATGAAAGAGATTGGGCCTAGTGGGCCA
1 TATGAAAGAGATTGGGCCTAATGGGCCA
83636431 TATG
1 TATG
83636435 CATGTATGTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
28 30 0.57
29 23 0.43
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
TATGAAAGAGATTGGGCCTAATGGGCCA
Found at i:83637652 original size:17 final size:18
Alignment explanation
Indices: 83637620--83637653 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
83637610 TTTAAAGAAG
83637620 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
83637638 GGTTTTCAA-GAAAACA
1 GGTTTTCAATGAAAACA
83637654 CTTCAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.26
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:83638339 original size:42 final size:43
Alignment explanation
Indices: 83638225--83638381 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
83638215 TGTGATTTTG
* *
83638225 TGTAAGACCACGTCTAGGACGTTGGCATCGAT--TTGAGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATACTT--GA-TTACA
* * ** * * *
83638269 TGTAAGACCATGTTTGGGACATCAGCATCG-TATTTGATTTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATACTTGATTACA
* *
83638311 TGTATGACCTTGTCTGGGACAG-TGGCATCGATACTTGATTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATACTTGATTACA
*
83638354 TGTAAGACCATGTTTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
83638382 TGAACAAGCT
Statistics
Matches: 88, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
42 27 0.31
43 35 0.40
44 24 0.27
45 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATACTTGATTACA
Found at i:83644177 original size:39 final size:40
Alignment explanation
Indices: 83643973--83644195 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
83643963 TTGAATGCTG
* * * * * *
83643973 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
83644013 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
83644053 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
83644093 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
83644133 TCCGGGTTATGTCCCGAAGGCATT-ATGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
83644172 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
83644196 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 34 0.21
40 118 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:83644215 original size:79 final size:80
Alignment explanation
Indices: 83644048--83644230 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
83644038 GTGCGAGATA
* * * * *
83644048 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTATGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
83644113 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * *
83644128 TTAAATCCGGGTTATGTCCCGAAGGCATT-ATGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTATGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
83644192 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
83644207 CTATATCC-GGTTATATCCCGAAGG
1 CTAAATCCGGGTTATGTCCCGAAGG
83644231 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 15 0.17
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTATGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:83653940 original size:26 final size:26
Alignment explanation
Indices: 83653910--83654017 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
83653900 TGAAATTCCC
83653910 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83653936 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
83653962 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83653988 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83654014 ATCA
1 ATCA
83654018 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:83655084 original size:327 final size:327
Alignment explanation
Indices: 83654492--83655432 Score: 1466
Period size: 327 Copynumber: 2.9 Consensus size: 327
83654482 TTAATTAAAT
** * * * * * *
83654492 TATTTGTTTATTTTTTAAGGAAGTTTAGTCTATTTTCAGAAAAAAACATAGGAGTTT--ATAAAA
1 TATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAG-AAAAAACACAGGAGTTTAAAAAAAA
* ** * * **
83654555 A-GATTAAGTTTAACATCTTCATTATAACAGTGTTTACTATTGAAATCTTAGTTGAAAATCCAAA
65 ACGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAA
* * * * * * **
83654619 TTA-TTCTTTTAGCAATACATATTTACAATTTAGCA-ACGGAAAAA-TGATATTAATGTAACTTT
130 TTACCT-TTTTAACAAAACACATTTACAATTTAGTAGA--AAAAAAGTGATATTAACATAACTTT
* * * *
83654681 AATAAAAACCATGTTTCATGCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAA
192 AGTAAAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAA
83654746 GTGTCATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGATAAGTTATCAAAGTTT
257 GTGTCATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGATAAGTTATCAAAGTTT
83654811 TAAAAA
322 TAAAAA
83654817 TATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
1 TATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
83654882 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
66 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
83654947 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
131 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
*
83655012 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAGGTGT
196 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAAGTGT
*
83655077 CATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGGTAAGTTATCAAAGTTTTAAA
261 CATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGATAAGTTATCAAAGTTTTAAA
83655142 AA
326 AA
* *
83655144 TATTTGTTTATTTTGGATGAAATTTTAATCTATTTTGAGAAAAAACACAGGAG-TTAAAAAAAAA
1 TATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
83655208 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
66 CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
83655273 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
131 TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
* *
83655338 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGATTTAAATGT
196 AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAAGTGT
* *
83655403 CATGTATGCCAAAGTAAAAAATC-TAAACTA
261 CATGTATGCCTAAG-GAAAAATCGTAAACTA
83655433 ACTCTCATGT
Statistics
Matches: 573, Mismatches: 36, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
324 16 0.03
325 33 0.06
326 234 0.41
327 288 0.50
328 2 0.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (327 bp):
TATTTGTTTATTTTAGATGAAAGTTTAATCTATTTTGAGAAAAAACACAGGAGTTTAAAAAAAAA
CGATTAAGTGTAACATCTTCATTATAATGGTGTTTACTATTGAAAACTTAGTTGAAATTCTGAAT
TACCTTTTTAACAAAACACATTTACAATTTAGTAGAAAAAAAGTGATATTAACATAACTTTAGTA
AAATCCACGTTTCATTCATAATTAAATAAAAATTCATATTCTAATAGCCTAAATGGTTTAAGTGT
CATGTATGCCTAAGGAAAAATCGTAAACTAGCTCCCATCCCACGATAAGTTATCAAAGTTTTAAA
AA
Found at i:83656078 original size:19 final size:20
Alignment explanation
Indices: 83656054--83656091 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
83656044 CCTTTCTACA
83656054 CAAAAC-ATAAAATTTAAGG
1 CAAAACTATAAAATTTAAGG
*
83656073 CAAAACTGTAAAATTTAAG
1 CAAAACTATAAAATTTAAG
83656092 ATGTAGAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.55, C:0.11, G:0.11, T:0.24
Consensus pattern (20 bp):
CAAAACTATAAAATTTAAGG
Found at i:83658568 original size:43 final size:44
Alignment explanation
Indices: 83658476--83658568 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
83658466 CGAGCTAGAT
*
83658476 CTTTTCTATTTTGAGATAATCGGATTACCCGTCTGGGCTGAATC
1 CTTTTCTATTTTGAGATAATCGGATTACCCGTCCGGGCTGAATC
* *
83658520 C-TTTCTATTTTGAGAT-ATCGGATTATCCTTCCGGGCTGAATC
1 CTTTTCTATTTTGAGATAATCGGATTACCCGTCCGGGCTGAATC
83658562 CTTTTCT
1 CTTTTCT
83658569 GCAATACATG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
42 24 0.53
43 20 0.44
44 1 0.02
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (44 bp):
CTTTTCTATTTTGAGATAATCGGATTACCCGTCCGGGCTGAATC
Done.