Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 255 of 356
Found at i:83698976 original size:40 final size:40
Alignment explanation
Indices: 83698833--83699172 Score: 449
Period size: 40 Copynumber: 8.6 Consensus size: 40
83698823 TCCTCGTTCA
* * * * *
83698833 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
83698872 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83698912 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
83698951 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83698991 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83699031 AATGCCTTCGGGACTTAACCC-GA-TTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
83699069 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
83699109 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
83699149 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
83699173 CAGCATTCAA
Statistics
Matches: 272, Mismatches: 22, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
38 36 0.13
39 78 0.29
40 150 0.55
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:83699077 original size:118 final size:118
Alignment explanation
Indices: 83698833--83699170 Score: 450
Period size: 118 Copynumber: 2.9 Consensus size: 118
83698823 TCCTCGTTCA
* * * * *
83698833 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
*
83698898 TAACAACTCGCACGAATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
66 TAATAACTCGCACGAATGCCTTCGGGACTTAACCC-GATTTAATAACTCGCACG
**
83698951 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
83699016 TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGA-TTAATAACTCGCACG
65 TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGATTTAATAACTCGCACG
* * *
83699069 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * * * * *
83699133 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCG
64 TTTAATAAC-TCGCACGAATGCCTTCGGGACTTAACCCG
83699171 GACAGCATTC
Statistics
Matches: 196, Mismatches: 20, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
117 3 0.02
118 128 0.65
119 54 0.28
120 11 0.06
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (118 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGATTTAATAACTCGCACG
Found at i:83699085 original size:158 final size:158
Alignment explanation
Indices: 83698833--83699172 Score: 456
Period size: 158 Copynumber: 2.2 Consensus size: 158
83698823 TCCTCGTTCA
* * *
83698833 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
* *
83698898 TAACAACTCGCACGAATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGG
66 TAACAACTCGCACGAATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTC-GG
* *
83698963 A-CTTAACCCGGATTTA-ACAAC-TCGCAC
130 ATCTTAACCCGGATATATAC-ACTTAGCAC
* * *
83698990 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCC-GA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGA
* * *
83699054 -TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC
64 TTTAACAACTCGCACGAATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTC
* *
83699118 GGATCTTAATCCGGATATATTCACTTAGCAC
128 GGATCTTAACCCGGATATATACACTTAGCAC
*
83699149 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
83699173 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
157 26 0.16
158 108 0.68
159 26 0.16
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (158 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACGAATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGA
TCTTAACCCGGATATATACACTTAGCAC
Found at i:83706885 original size:39 final size:39
Alignment explanation
Indices: 83706842--83707169 Score: 326
Period size: 40 Copynumber: 8.6 Consensus size: 39
83706832 TCCTCGTTCA
* * * *
83706842 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCACG
* * *
83706881 AATGCCTTCGGGACATAA-CC--A-TAACAA--CG-ACG
1 AATGCCTTCGGGACTTAACCCGGATTTATAACTCGCACG
*
83706913 AATG-C-TC-GGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTT-ATAACTCGCACG
*
83706950 AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTATAACTCGCACG
83706989 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTT-ATAACTCGCACG
83707029 AATGCCTTCGGGACTTAACCCGGA-TTAT-ACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTATAACTCGCACG
* *
83707066 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCACG
* * * * *
83707106 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-TAAC-TCGCACG
* *
83707146 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
83707170 CAGCATTCAA
Statistics
Matches: 249, Mismatches: 21, Indels: 37
0.81 0.07 0.12
Matches are distributed among these distances:
29 7 0.03
30 4 0.02
31 3 0.01
32 6 0.02
33 1 0.00
34 6 0.02
35 2 0.01
36 2 0.01
37 40 0.16
38 8 0.03
39 63 0.25
40 99 0.40
41 8 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTATAACTCGCACG
Found at i:83707051 original size:79 final size:78
Alignment explanation
Indices: 83706842--83707130 Score: 334
Period size: 77 Copynumber: 3.8 Consensus size: 78
83706832 TCCTCGTTCA
* * * * * *
83706842 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAA-CC--A-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
83706902 -T-AACAACG-ACG
66 TTAAAC-TCGCACG
*
83706913 AATG-C-TC-GGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
83706975 TTAAAACTCGCACG
66 TT-AAACTCGCACG
83706989 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
83707053 TTATACTCGCACG
66 TTAAACTCGCACG
* * * * *
83707066 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA
83707130 T
65 T
83707131 ATATTCACTT
Statistics
Matches: 189, Mismatches: 15, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
68 23 0.12
69 19 0.10
70 3 0.02
71 4 0.02
72 1 0.01
74 1 0.01
75 2 0.01
76 13 0.07
77 66 0.35
78 4 0.02
79 53 0.28
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
TTAAACTCGCACG
Found at i:83711123 original size:34 final size:34
Alignment explanation
Indices: 83711080--83711146 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
83711070 TTGTTGCTGT
83711080 TACTGTAATGGGCTAAGGCCC-ACACTGATACTGA
1 TACTGTAATGGGCTAAGGCCCTA-ACTGATACTGA
*
83711114 TACTGTAATGGGCTATGGCCCTAACTGATACTG
1 TACTGTAATGGGCTAAGGCCCTAACTGATACTG
83711147 GACTGTCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (34 bp):
TACTGTAATGGGCTAAGGCCCTAACTGATACTGA
Found at i:83714491 original size:40 final size:40
Alignment explanation
Indices: 83714414--83714590 Score: 182
Period size: 40 Copynumber: 4.4 Consensus size: 40
83714404 CTGTCCGGGC
* * * *
83714414 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT-TCCGGAT
*
83714454 TAAGAT-CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGT
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTATTAATTCCGGAT
* * * *
83714494 TAAGTCCCGAAGGCCTTTGTGCGAGATACTAATTCTGGAT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCCGGAT
* * *
83714534 TAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTATT-AATTCCGGAT
83714574 TAAGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATT
83714591 GTATGAGTTA
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 103 0.90
41 10 0.09
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCCGGAT
Found at i:83714544 original size:80 final size:81
Alignment explanation
Indices: 83714407--83714587 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
83714397 TTGAATGCTG
* *
83714407 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
83714471 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
* *
83714487 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCTGGATTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
83714548 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
83714567 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
83714588 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:83724188 original size:44 final size:42
Alignment explanation
Indices: 83724137--83724430 Score: 234
Period size: 43 Copynumber: 6.7 Consensus size: 42
83724127 CTATGTGTTA
** *
83724137 TCGTGTAAGACCATGTTTGGGACATTGGCATC-AACTTATGATT
1 TCGTGTAAGACCACATCTGGGACATTGGCATCGAA-TT-TGATT
* *
83724180 TACGTGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACATCTGGGACATTGGCATCGAATTTGATT
* *
83724223 TCGTGTAAGACTTAAGACCACATCTGGGACGTTGGCATCGTATTTGATT
1 TC--GT--G---TAAGACCACATCTGGGACATTGGCATCGAATTTGATT
* * *
83724272 TCGTGTAAGACC-CTGTCTAGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-ATCTGGGACATTGGCATCGA-ATTTGATT
* * * * * *
83724315 ACATGTAAGACTACATCTAGGACGTTGGCATCGTATTTGATT
1 TCGTGTAAGACCACATCTGGGACATTGGCATCGAATTTGATT
* * *
83724357 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCAATATTTGATT
1 TCGTGTAAGACCAC-ATCTGGGACATTGGCATCGA-ATTTGATT
* * * *
83724400 ACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCACATCTGGGACATTGGCAT
83724431 TGTACGAGCT
Statistics
Matches: 206, Mismatches: 30, Indels: 30
0.77 0.11 0.11
Matches are distributed among these distances:
41 2 0.01
42 54 0.26
43 73 0.35
44 33 0.16
45 2 0.01
46 1 0.00
47 2 0.01
49 39 0.19
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCACATCTGGGACATTGGCATCGAATTTGATT
Found at i:83724247 original size:49 final size:49
Alignment explanation
Indices: 83724186--83724282 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
83724176 GATTTACGTG
83724186 TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACT
1 TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACT
83724235 TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGAC
1 TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGAC
83724283 CCTGTCTAGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (49 bp):
TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACT
Found at i:83724340 original size:85 final size:85
Alignment explanation
Indices: 83724235--83724430 Score: 347
Period size: 85 Copynumber: 2.3 Consensus size: 85
83724225 GTGTAAGACT
83724235 TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTAGGACAGTGG
1 TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTAGGACAGTGG
*
83724300 CATCGATATTTGATTACATG
66 CATCAATATTTGATTACATG
* * *
83724320 TAAGACTACATCTAGGACGTTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGG
1 TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTAGGACAGTGG
83724385 CATCAATATTTGATTACATG
66 CATCAATATTTGATTACATG
*
83724405 TAAGACCACGTCTGGGACGTTGGCAT
1 TAAGACCACATCTGGGACGTTGGCAT
83724431 TGTACGAGCT
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 104 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (85 bp):
TAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTAGGACAGTGG
CATCAATATTTGATTACATG
Found at i:83732751 original size:27 final size:26
Alignment explanation
Indices: 83732687--83732826 Score: 120
Period size: 27 Copynumber: 5.2 Consensus size: 26
83732677 TCGTTAAGAC
**
83732687 CCCTGACTTGTAAAATTATTGAAATA
1 CCCTGACTTGTAAAATTACCGAAATA
** *
83732713 CCTCTGGGTTGTAAAATTACTGAAATA
1 CC-CTGACTTGTAAAATTACCGAAATA
* * *
83732740 CACCTGATTTGTGAAATTACCAAAATA
1 C-CCTGACTTGTAAAATTACCGAAATA
* *
83732767 CCCTCAATT-TATGAAATTACCGAAATA
1 CCCTGACTTGTA--AAATTACCGAAATA
*
83732794 CCCCCGACTTGTAAAATTACCGAAATA
1 -CCCTGACTTGTAAAATTACCGAAATA
83732821 CTCCTG
1 C-CCTG
83732827 TAGGGTAAAA
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.01
26 9 0.10
27 72 0.79
28 7 0.08
29 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (26 bp):
CCCTGACTTGTAAAATTACCGAAATA
Found at i:83734516 original size:27 final size:27
Alignment explanation
Indices: 83734474--83734531 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
83734464 ACCCACTAAT
83734474 TGATAAAATGAATGTTATGCCCCTATG
1 TGATAAAATGAATGTTATGCCCCTATG
*
83734501 TGATAAAATGATTGTTATGCCCCTATG
1 TGATAAAATGAATGTTATGCCCCTATG
83734528 TGAT
1 TGAT
83734532 GTATGATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (27 bp):
TGATAAAATGAATGTTATGCCCCTATG
Found at i:83740354 original size:46 final size:46
Alignment explanation
Indices: 83740304--83740479 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
83740294 TGGTTGAGCA
* *
83740304 TCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
83740350 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
83740397 TTCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
83740443 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83740480 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
45 1 0.01
46 66 0.65
47 34 0.34
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:83740465 original size:93 final size:93
Alignment explanation
Indices: 83740301--83740472 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
83740291 GGATGGTTGA
*
83740301 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
83740366 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * * *
83740394 GCATTCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
83740458 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
83740473 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:83743435 original size:15 final size:15
Alignment explanation
Indices: 83743415--83743483 Score: 68
Period size: 15 Copynumber: 4.6 Consensus size: 15
83743405 ATCTTGGGTT
*
83743415 TCTTTATGCTGGATC
1 TCTTTATTCTGGATC
*
83743430 TCTTTATTCTGGATT
1 TCTTTATTCTGGATC
* *
83743445 TCTTTATTCTGGGTT
1 TCTTTATTCTGGATC
* *
83743460 TCTCTA-TCTTGGATT
1 TCTTTATTC-TGGATC
83743475 TCTTTATTC
1 TCTTTATTC
83743484 GGTTTTCTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
14 2 0.04
15 42 0.91
16 2 0.04
ACGTcount: A:0.12, C:0.17, G:0.14, T:0.57
Consensus pattern (15 bp):
TCTTTATTCTGGATC
Found at i:83743482 original size:30 final size:30
Alignment explanation
Indices: 83743404--83743491 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
83743394 CATAGTTTCG
* * * *
83743404 TATCTTGGGTTTCTTTATGCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
83743434 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
83743464 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
83743492 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.17, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:83746036 original size:45 final size:44
Alignment explanation
Indices: 83745874--83746045 Score: 152
Period size: 45 Copynumber: 3.8 Consensus size: 44
83745864 TGGTGAGCAT
* * *
83745874 CCGAGCTCGTTGAGTTGAGTCTGAGTTCAC-T-TGGATGCAAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
83745917 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
83745965 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
83746010 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83746046 CGGTGTAACA
Statistics
Matches: 102, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 29 0.28
45 35 0.34
46 4 0.04
47 29 0.28
48 1 0.01
49 2 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:83747424 original size:27 final size:27
Alignment explanation
Indices: 83747394--83747571 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
83747384 ATATTGAGCC
* *
83747394 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
83747421 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
83747448 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * **
83747476 CGCACACTTAGTGCCGCATGATCATTT
1 CGCACACTTAGTGCTACATAATCAACT
* **
83747503 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
83747530 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAATCA-ACT
83747557 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83747572 GTACAGTTGA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:83747533 original size:82 final size:81
Alignment explanation
Indices: 83747420--83747570 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
83747410 TATAATCAAC
* *
83747420 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
83747485 AGTGCCGCATGATCATT
65 AGTGCCGCATGATCATT
* ** *
83747502 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
83747566 AGTGC
65 AGTGC
83747571 TGTACAGTTG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGATCATT
Found at i:83750075 original size:42 final size:41
Alignment explanation
Indices: 83749984--83750130 Score: 116
Period size: 42 Copynumber: 3.4 Consensus size: 41
83749974 GTGTTACACG
* * * * * *
83749984 TGGTCTTACATGTAATTAAATATCAATGCCACTGTCCCAAACA
1 TGGTCTTACATG-AAATCAA-ATCGATGGCAATGTCCCAGACA
* * * *
83750027 GGGTCTTACATGAAATCAAATAGGATGTCGATGTCCCAGACA
1 TGGTCTTACATGAAATCAAAT-CGATGGCAATGTCCCAGACA
*
83750069 TGGTCTTACACAT-AAATCTCAAATCGATGGCAACGTCCCAGACA
1 TGGTCTT--ACATGAAA--TCAAATCGATGGCAATGTCCCAGACA
*
83750113 TGGTCTTACACGAAATCA
1 TGGTCTTACATGAAATCA
83750131 CATATCGGAA
Statistics
Matches: 83, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
41 5 0.06
42 28 0.34
43 17 0.20
44 27 0.33
45 6 0.07
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (41 bp):
TGGTCTTACATGAAATCAAATCGATGGCAATGTCCCAGACA
Found at i:83755909 original size:10 final size:10
Alignment explanation
Indices: 83755888--83755934 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
83755878 CATGAGATTT
83755888 TGATAT-ACA
1 TGATATGACA
83755897 TGATATGACA
1 TGATATGACA
83755907 TGATATGACA
1 TGATATGACA
83755917 TGATATGCACA
1 TGATATG-ACA
83755928 TGATATG
1 TGATATG
83755935 TTATGAGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:83755930 original size:21 final size:21
Alignment explanation
Indices: 83755888--83755954 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
83755878 CATGAGATTT
83755888 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
83755907 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
** *
83755928 TGATATGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
*
83755949 AGATAT
1 TGATAT
83755955 ATTCATTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.24
21 26 0.62
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:83756035 original size:25 final size:25
Alignment explanation
Indices: 83755999--83756071 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
83755989 GGGGGAAGTG
* *
83755999 CAAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
* *
83756024 CGAAAAGGGCTTTGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTAAC
83756049 CAAAAAGGGCTTTGCCCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
83756072 CTAAAAGAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAC
Found at i:83756083 original size:24 final size:23
Alignment explanation
Indices: 83756001--83756083 Score: 94
Period size: 25 Copynumber: 3.4 Consensus size: 23
83755991 GGGAAGTGCA
* *
83756001 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTA-CT
*
83756026 AAAAGGGCTTTGCCCCAGTTAATCA
1 AAAAGGGCTTTGCCCCAGTT-A-CT
83756051 AAAAGGGCTTTGCCCCAGTTACT
1 AAAAGGGCTTTGCCCCAGTTACT
83756074 AAAAGAGGCT
1 AAAAG-GGCT
83756084 AGGCCTCCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 6 0.12
24 7 0.13
25 39 0.75
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTACT
Found at i:83763917 original size:10 final size:10
Alignment explanation
Indices: 83763896--83763942 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
83763886 CATGAGATTT
83763896 TGATAT-ACA
1 TGATATGACA
83763905 TGATATGACA
1 TGATATGACA
83763915 TGATATGACA
1 TGATATGACA
83763925 TGATATGCACA
1 TGATATG-ACA
83763936 TGATATG
1 TGATATG
83763943 TTATGAGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:83763938 original size:21 final size:21
Alignment explanation
Indices: 83763896--83763962 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
83763886 CATGAGATTT
83763896 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
83763915 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
** *
83763936 TGATATGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
*
83763957 AGATAT
1 TGATAT
83763963 ATTCATTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.24
21 26 0.62
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:83764044 original size:25 final size:25
Alignment explanation
Indices: 83764008--83764080 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
83763998 GGGGGAAGTG
* *
83764008 CAAAAAGGGCTTTTCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTAAT
* *
83764033 CGAAAAGGGCTTAGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTAAT
83764058 CAAAAAGGGCTTTGCCCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
83764081 CTAAAAGAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAT
Found at i:83769742 original size:47 final size:47
Alignment explanation
Indices: 83769640--83770141 Score: 770
Period size: 47 Copynumber: 10.6 Consensus size: 47
83769630 CCCTTTGGGA
* * * * * * *
83769640 CTTATCGCATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
83769687 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83769734 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83769781 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83769830 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83769877 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83769924 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83769973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83770020 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83770069 CTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83770116 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
83770142 CACAATTATC
Statistics
Matches: 419, Mismatches: 30, Indels: 12
0.91 0.07 0.03
Matches are distributed among these distances:
47 284 0.68
49 135 0.32
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83769837 original size:96 final size:94
Alignment explanation
Indices: 83769640--83770141 Score: 788
Period size: 96 Copynumber: 5.3 Consensus size: 94
83769630 CCCTTTGGGA
* * * * * * *
83769640 CTTATCGCATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
83769705 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
83769734 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
83769799 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
83769830 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
83769895 TTTCACATTCATCACATCGGTCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
83769924 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
83769989 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
83770020 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
83770085 ACTTTCACATTCATCACATCGGCAATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
83770116 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
83770142 CACAATTATC
Statistics
Matches: 383, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
94 107 0.28
96 276 0.72
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:83769909 original size:143 final size:143
Alignment explanation
Indices: 83769651--83770141 Score: 781
Period size: 143 Copynumber: 3.4 Consensus size: 143
83769641 TTATCGCATT
* * * * * *
83769651 TATACACTTTCACATCCATCACGTTGGCCACTCGGCC-CTGTCACATATATACACTTTCACATTC
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTC-ATCACATATATACACTTTCACATTC
83769715 ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
65 ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
83769780 CCTTATCACATATA
130 CCTTATCACATATA
83769794 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCA
*
83769859 TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
66 TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83769924 CTTATCACATATA
131 CTTATCACATATA
* * *
83769937 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCA
* * *
83770002 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
66 TCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAG
83770067 GCCTTATCAC--ATA
129 GCCTTATCACATATA
* * * *
83770080 TATACACTTTCACATTCATCACATCGGCAATTAGGCCTTATCACATATATATACATTCACAT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACAT
83770142 CACAATTATC
Statistics
Matches: 326, Mismatches: 19, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
143 281 0.86
144 1 0.00
145 44 0.13
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCA
TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATA
Found at i:83775672 original size:43 final size:43
Alignment explanation
Indices: 83775611--83775785 Score: 167
Period size: 43 Copynumber: 4.1 Consensus size: 43
83775601 AAAGCTCGTA
* *
83775611 CAATGCCAATGTCCCAAACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCCAAACGTGGTCTTACACGAAATCAAATAT
* * *
83775654 CAATGCCACTATCCCAAACAG-GGTCATACACGAAATCAAATA-
1 CAATGCCAATGTCCCAAAC-GTGGTCTTACACGAAATCAAATAT
* * * * **
83775696 CGATGCCGATGTCCCAGACATGGTCTTACACGTAAATC-TCTAAT
1 CAATGCCAATGTCCCAAACGTGGTCTTACACG-AAATCAAAT-AT
* * * *
83775740 CGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCACATAT
1 CAATGCCAATGTCCCAAACGTGGTCTTACACGAAATCAAATAT
83775783 CAA
1 CAA
83775786 AATCCTATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 25 0.24
43 50 0.47
44 31 0.29
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
CAATGCCAATGTCCCAAACGTGGTCTTACACGAAATCAAATAT
Found at i:83781040 original size:35 final size:35
Alignment explanation
Indices: 83780994--83781064 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
83780984 GTAATCCGCT
*
83780994 GATCTCAATTATGAACAAGGATCTAGCCTGAGCGG
1 GATCTCAATTATGAACAAGGATCTAGCCCGAGCGG
83781029 GATCTCAATTATGAACAAGGATCTAGCCCGAGCGG
1 GATCTCAATTATGAACAAGGATCTAGCCCGAGCGG
83781064 G
1 G
83781065 TGTTCCTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (35 bp):
GATCTCAATTATGAACAAGGATCTAGCCCGAGCGG
Found at i:83781052 original size:19 final size:19
Alignment explanation
Indices: 83780994--83781052 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
83780984 GTAATCCGCT
83780994 GATCTCAATTATGAACAAG
1 GATCTCAATTATGAACAAG
*** * *
83781013 GATCT--AGCCTGAGC-GG
1 GATCTCAATTATGAACAAG
83781029 GATCTCAATTATGAACAAG
1 GATCTCAATTATGAACAAG
83781048 GATCT
1 GATCT
83781053 AGCCCGAGCG
Statistics
Matches: 27, Mismatches: 10, Indels: 6
0.63 0.23 0.14
Matches are distributed among these distances:
16 6 0.22
17 5 0.19
18 5 0.19
19 11 0.41
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (19 bp):
GATCTCAATTATGAACAAG
Found at i:83798873 original size:11 final size:11
Alignment explanation
Indices: 83798857--83798883 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
83798847 ATGATTAAGC
83798857 TATAATCTTGG
1 TATAATCTTGG
83798868 TATAATCTTGG
1 TATAATCTTGG
83798879 TATAA
1 TATAA
83798884 ATGTATAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.44
Consensus pattern (11 bp):
TATAATCTTGG
Found at i:83801537 original size:19 final size:19
Alignment explanation
Indices: 83801513--83801560 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
83801503 ATATTTGGGC
**
83801513 TTAATGGGTTGAAAACGGG
1 TTAATGGGCCGAAAACGGG
* *
83801532 TTAATGGGCCGAAAATGGT
1 TTAATGGGCCGAAAACGGG
83801551 TTAATGGGCC
1 TTAATGGGCC
83801561 AACGGACCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.27
Consensus pattern (19 bp):
TTAATGGGCCGAAAACGGG
Found at i:83801690 original size:27 final size:27
Alignment explanation
Indices: 83801660--83801721 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
83801650 ATTTACTAAA
83801660 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
* *
83801687 ATACCTCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
83801713 ATACCCCTA
1 ATACCCCTA
83801722 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 21 0.70
27 7 0.23
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:83801867 original size:28 final size:27
Alignment explanation
Indices: 83801826--83801912 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
83801816 GGAGGAAGCG
*
83801826 TTCTGGTGGTTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
83801854 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * *
83801881 ATCTGGTGACTCTGTCACAATATCTG-
1 TTCTGGTGGCTCTGCCACAATATCTGT
83801907 TTCTGG
1 TTCTGG
83801913 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 5 0.09
27 32 0.59
28 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:83804992 original size:48 final size:48
Alignment explanation
Indices: 83804921--83805147 Score: 199
Period size: 48 Copynumber: 4.7 Consensus size: 48
83804911 TAAAGTGCCA
*
83804921 ATGCCATGTCCCT-GACATGGTCTTACA-T-GAATCCACATATCATCCCCG
1 ATGCCATGT-CCTAGACATGGTCTTACACTGGCA--CACATATCATCCCCG
* * *
83804969 ATGCCATATCCTAGACATGGTCTTACACTGGCACACATATCATCGCTG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCCCCG
* * * * ** * ** *
83805017 ATGCCATGTCCCAGGCATGGTCTTACACTTGCAAATGTGTCATCGTCA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCCCCG
* * * * * *
83805065 ATGCCATGTCCCAAATATGGTCTTACACAGCCACACATATCATCGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCCCCG
* * *
83805113 TTGCCATGTCCCAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCACA
83805148 TTTAGCATGG
Statistics
Matches: 145, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
47 3 0.02
48 139 0.96
49 1 0.01
50 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCCCCG
Found at i:83811381 original size:17 final size:19
Alignment explanation
Indices: 83811339--83811382 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
83811329 ATGAAATTTT
*
83811339 AATTAGTATTATGAGACAA
1 AATTATTATTATGAGACAA
*
83811358 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGACAA
83811376 AA-TATTA
1 AATTATTA
83811383 CTGTCTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATGAGACAA
Found at i:83819169 original size:222 final size:222
Alignment explanation
Indices: 83818783--83819230 Score: 887
Period size: 222 Copynumber: 2.0 Consensus size: 222
83818773 TGAGACCACA
*
83818783 AATTAGACTTTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
1 AATTAGACATTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
83818848 TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
66 TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
83818913 AAGTTGAAAATTTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
131 AAGTTGAAAATTTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
83818978 TCTTAAAGAGCAATTTTCCCAATATCT
196 TCTTAAAGAGCAATTTTCCCAATATCT
83819005 AATTAGACATTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
1 AATTAGACATTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
83819070 TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
66 TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
83819135 AAGTTGAAAATTTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
131 AAGTTGAAAATTTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
83819200 TCTTAAAGAGCAATTTTCCCAATATCT
196 TCTTAAAGAGCAATTTTCCCAATATCT
83819227 AATT
1 AATT
83819231 TTTTGGACAA
Statistics
Matches: 225, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 225 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (222 bp):
AATTAGACATTAAAATATTTAATTTATGATCATTATGAGGTTTAGAATATGAATATATGCATGTA
TTAAAGTTTCATGAAGAAATTCCAAGTATAAGGTGTCCAATTGGAAATTAGGGACTAAATTGAAT
AAGTTGAAAATTTTGTATTTTAGAAGCAATTTGTATGTAATTGCTATGGATTATTAATTAGGACG
TCTTAAAGAGCAATTTTCCCAATATCT
Found at i:83833622 original size:40 final size:40
Alignment explanation
Indices: 83833474--83833685 Score: 241
Period size: 40 Copynumber: 5.3 Consensus size: 40
83833464 CATTTGAATG
* * *
83833474 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
83833514 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
83833554 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
83833594 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * * ** *
83833634 ATACCCGAGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
83833674 ATATCC-GGCTAA
1 ATATCCGGGCTAA
83833686 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 15, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 6 0.04
40 145 0.94
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:83841682 original size:40 final size:41
Alignment explanation
Indices: 83841623--83841774 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
83841613 CATTTGAATG
* * *
83841623 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
83841663 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
83841703 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
83841743 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
83841775 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:83843480 original size:16 final size:16
Alignment explanation
Indices: 83843456--83843498 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 16
83843446 TAAAAACAAT
*
83843456 TTAAGATATAAATTTA
1 TTAATATATAAATTTA
83843472 TTAATATATATAAATTTA
1 TT-A-ATATATAAATTTA
83843490 TTAATATAT
1 TTAATATAT
83843499 GTAAAAACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 8 0.33
17 2 0.08
18 14 0.58
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
TTAATATATAAATTTA
Found at i:83843482 original size:18 final size:18
Alignment explanation
Indices: 83843461--83843503 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
83843451 ACAATTTAAG
83843461 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
83843479 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
83843497 ATGTAAA
1 ATATAAA
83843504 AACAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:83847497 original size:20 final size:20
Alignment explanation
Indices: 83847448--83847504 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
83847438 AGTTTATGTT
** * *
83847448 AAGTAAATAAAATGGAAAGT
1 AAGTAAATGGAATGGTAAGA
*
83847468 AAGTAGATGGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
83847488 AAGTAAATGGAGTGGTA
1 AAGTAAATGGAATGGTA
83847505 CATAGTTTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.49, C:0.00, G:0.30, T:0.21
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:83854807 original size:48 final size:48
Alignment explanation
Indices: 83854736--83855217 Score: 811
Period size: 48 Copynumber: 10.0 Consensus size: 48
83854726 CAAGATAAAT
* * *
83854736 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83854784 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83854832 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
83854880 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83854928 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
83854976 GTATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
83855024 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83855072 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83855120 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
83855168 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
83855216 AT
1 AT
83855218 GTGTGTATAT
Statistics
Matches: 409, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 409 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:83855411 original size:37 final size:37
Alignment explanation
Indices: 83855358--83855460 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
83855348 GGAAATATAT
*
83855358 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
83855395 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
83855432 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
83855461 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83858738 original size:34 final size:34
Alignment explanation
Indices: 83858700--83858781 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
83858690 CTGATATGTT
* *
83858700 AATGGGCTTAGGCCCAGACTGCTACTGTTACTGA
1 AATGGGCTAAGGCCCAAACTGCTACTGTTACTGA
* *
83858734 AATGGGCTCAGGCCCAAACTGCTACTGTTATTGA
1 AATGGGCTAAGGCCCAAACTGCTACTGTTACTGA
*
83858768 AATAGGCTAAGGCC
1 AATGGGCTAAGGCC
83858782 TAACTAATAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (34 bp):
AATGGGCTAAGGCCCAAACTGCTACTGTTACTGA
Found at i:83861307 original size:27 final size:27
Alignment explanation
Indices: 83861276--83861329 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
83861266 TGAAACATGT
83861276 CAACTTAATTTCCATATGCTTTATCAA
1 CAACTTAATTTCCATATGCTTTATCAA
*
83861303 CAACTTAATTTTCATATGCTTTATCAA
1 CAACTTAATTTCCATATGCTTTATCAA
83861330 TACCAAGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (27 bp):
CAACTTAATTTCCATATGCTTTATCAA
Found at i:83867561 original size:18 final size:18
Alignment explanation
Indices: 83867538--83867658 Score: 170
Period size: 18 Copynumber: 6.7 Consensus size: 18
83867528 CTTGGCCCGT
* *
83867538 TGTAGTAACAATAAACAG
1 TGTAGTAACAGTAATCAG
83867556 TGTAGTAACAGTAATCAG
1 TGTAGTAACAGTAATCAG
*
83867574 TGCAGTAACAGTAATCAG
1 TGTAGTAACAGTAATCAG
*
83867592 TGTAGTAGCAGTAATCAG
1 TGTAGTAACAGTAATCAG
* *
83867610 TGCAGTAATAGTAATCAG
1 TGTAGTAACAGTAATCAG
*
83867628 TGTAGTAATAGTAATCAG
1 TGTAGTAACAGTAATCAG
*
83867646 TGCAGTAACAGTA
1 TGTAGTAACAGTA
83867659 TACAAGCCCT
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 92 1.00
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (18 bp):
TGTAGTAACAGTAATCAG
Found at i:83867581 original size:12 final size:13
Alignment explanation
Indices: 83867559--83867622 Score: 50
Period size: 12 Copynumber: 5.3 Consensus size: 13
83867549 TAAACAGTGT
*
83867559 AGTAACAGTAATC
1 AGTAGCAGTAATC
83867572 AGT-GCAGTAA-C
1 AGTAGCAGTAATC
* *
83867583 AGTAATCAGT-GT-
1 AGT-AGCAGTAATC
83867595 AGTAGCAGTAATC
1 AGTAGCAGTAATC
83867608 AGT-GCAGTAAT-
1 AGTAGCAGTAATC
83867619 AGTA
1 AGTA
83867623 ATCAGTGTAG
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
11 12 0.30
12 18 0.45
13 10 0.25
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25
Consensus pattern (13 bp):
AGTAGCAGTAATC
Found at i:83867593 original size:36 final size:36
Alignment explanation
Indices: 83867541--83867658 Score: 191
Period size: 36 Copynumber: 3.3 Consensus size: 36
83867531 GGCCCGTTGT
* *
83867541 AGTAACAATAAACAGTGTAGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGTAGTAACAGTAATCAGTGC
*
83867577 AGTAACAGTAATCAGTGTAGTAGCAGTAATCAGTGC
1 AGTAACAGTAATCAGTGTAGTAACAGTAATCAGTGC
* *
83867613 AGTAATAGTAATCAGTGTAGTAATAGTAATCAGTGC
1 AGTAACAGTAATCAGTGTAGTAACAGTAATCAGTGC
83867649 AGTAACAGTA
1 AGTAACAGTA
83867659 TACAAGCCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 75 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (36 bp):
AGTAACAGTAATCAGTGTAGTAACAGTAATCAGTGC
Found at i:83868011 original size:27 final size:26
Alignment explanation
Indices: 83867976--83868257 Score: 291
Period size: 27 Copynumber: 10.6 Consensus size: 26
83867966 TACATCATAT
* * *
83867976 AGGGAAAAACAATCATCTTACCATATA
1 AGGGCAAAACAGTCATTTTACC-TATA
83868003 AGGGCAAAACAGTCATTTTATCAC-AT-
1 AGGGCAAAACAGTCATTTTA-C-CTATA
* *
83868029 AGGGCAAAATAGTCATTTTATCCCATA
1 AGGGCAAAACAGTCATTTTA-CCTATA
** *
83868056 AAAGCAAAACAATCATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
83868083 AGGGCAAAACAGTCATTTTACC-ACA
1 AGGGCAAAACAGTCATTTTACCTATA
* *
83868108 AAGGCAAAACAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
* *
83868135 AGGGCAAAACAATCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
* *
83868162 GGGGCAAATCAGTCATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
83868189 AGGGCAAAACAGTCATTTTACCCCATA
1 AGGGCAAAACAGTCATTTTA-CCTATA
*
83868216 AGGGCAAAACAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCT-ATA
*
83868243 AGGGCAAAGCAGTCA
1 AGGGCAAAACAGTCA
83868258 AACAATGAAA
Statistics
Matches: 218, Mismatches: 28, Indels: 18
0.83 0.11 0.07
Matches are distributed among these distances:
25 24 0.11
26 27 0.12
27 163 0.75
28 3 0.01
29 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (26 bp):
AGGGCAAAACAGTCATTTTACCTATA
Found at i:83868099 original size:54 final size:53
Alignment explanation
Indices: 83867970--83868257 Score: 339
Period size: 54 Copynumber: 5.4 Consensus size: 53
83867960 TATATATACA
* * * *
83867970 TCATATAGGGAAAAACAATCATCTTA-CCATATAAGGGCAAAACAGTCATTTTATC
1 TCATA-AGGGCAAAACAGTCATTTTACCCATA-AA-GGCAAAACAGTCATTTTACC
* * * *
83868025 ACAT-AGGGCAAAATAGTCATTTTATCCCATAAAAGCAAAACAATCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTA-CCCATAAAGGCAAAACAGTCATTTTACC
*
83868078 TCATAAGGGCAAAACAGTCATTTTA-CCACAAAGGCAAAACAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTACCCATAAAGGCAAAACAGTCATTTTACC
* * *** *
83868130 TCATGAGGGCAAAACAATCATTTTACCTCATGGGGGCAAATCAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTACC-CATAAAGGCAAAACAGTCATTTTACC
*
83868184 TCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAGTCATTTTACC
1 TCATAAGGGCAAAACAGTCATTTTA-CCCATAAAGGCAAAACAGTCATTTTACC
* *
83868238 TCATGAGGGCAAAGCAGTCA
1 TCATAAGGGCAAAACAGTCA
83868258 AACAATGAAA
Statistics
Matches: 200, Mismatches: 27, Indels: 13
0.83 0.11 0.05
Matches are distributed among these distances:
52 47 0.23
53 37 0.19
54 106 0.53
55 10 0.05
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.25
Consensus pattern (53 bp):
TCATAAGGGCAAAACAGTCATTTTACCCATAAAGGCAAAACAGTCATTTTACC
Found at i:83877101 original size:57 final size:58
Alignment explanation
Indices: 83877031--83877141 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
83877021 AAATTCACAT
* * *
83877031 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCTATTAGGCCCAAACC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAACC
* ** *
83877088 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTTTATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
83877142 GACACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAACC
Found at i:83877106 original size:29 final size:29
Alignment explanation
Indices: 83877034--83877141 Score: 112
Period size: 29 Copynumber: 3.8 Consensus size: 29
83877024 TTCACATACC
* * *
83877034 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
83877062 T-TCATATGGCCTATTAGGCCCAAACCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
83877091 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
83877120 TTTTTATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
83877142 GACACATTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
27 1 0.02
28 16 0.25
29 47 0.72
30 1 0.02
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:83877386 original size:16 final size:16
Alignment explanation
Indices: 83877365--83877396 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
83877355 CCAAACTTTT
83877365 AGCTTTTCGACATTTC
1 AGCTTTTCGACATTTC
*
83877381 AGCTTTTCGGCATTTC
1 AGCTTTTCGACATTTC
83877397 GGCATTTCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.44
Consensus pattern (16 bp):
AGCTTTTCGACATTTC
Found at i:83877404 original size:16 final size:16
Alignment explanation
Indices: 83877369--83877407 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
83877359 ACTTTTAGCT
* *
83877369 TTTCGACATTTCAGCT
1 TTTCGGCATTTCAGCA
*
83877385 TTTCGGCATTTCGGCA
1 TTTCGGCATTTCAGCA
83877401 TTTCGGC
1 TTTCGGC
83877408 TTTTGCCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.13, C:0.26, G:0.21, T:0.41
Consensus pattern (16 bp):
TTTCGGCATTTCAGCA
Found at i:83881812 original size:43 final size:43
Alignment explanation
Indices: 83881746--83881884 Score: 206
Period size: 43 Copynumber: 3.2 Consensus size: 43
83881736 CAGGTTAAAT
* * * * *
83881746 CTAGCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTTGTAC
1 CTAGCAGGCTTCATGCTGGTGATGTGTATTCGGGCCTTCGTGC
* *
83881789 CTAGCTGGCTTCATGTTGGTGATGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCATGCTGGTGATGTGTATTCGGGCCTTCGTGC
*
83881832 CTAGCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCATGCTGGTGATGTGTATTCGGGCCTTCGTGC
83881875 CTAGCAGGCT
1 CTAGCAGGCT
83881885 AAGATGCCGA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.12, C:0.23, G:0.32, T:0.33
Consensus pattern (43 bp):
CTAGCAGGCTTCATGCTGGTGATGTGTATTCGGGCCTTCGTGC
Found at i:83883386 original size:40 final size:40
Alignment explanation
Indices: 83883331--83883522 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
83883321 ATAACCACAA
* * * *
83883331 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
83883371 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
83883411 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
83883451 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
83883491 GGATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
83883523 CATTCAAATG
Statistics
Matches: 141, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 136 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:83893103 original size:46 final size:46
Alignment explanation
Indices: 83892982--83893105 Score: 203
Period size: 46 Copynumber: 2.7 Consensus size: 46
83892972 AACCCACCCC
* * * *
83892982 TAAGTGATCTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
83893028 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
83893074 TAAGTGAACTCGGACTCAACTCAATGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
83893106 AATGCTCAAC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:83898572 original size:93 final size:93
Alignment explanation
Indices: 83898465--83898633 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
83898455 CCCTAAGTGT
*** *
83898465 ACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCACCCATAAGTGAACTCGGACTCAACTCAAGG
1 ACTCGGACTCAACTCAACAAGCTCGGAAATTCGCACCCATAAGTGAACTCGGACTCAACTCAACG
83898530 AGTTCGGATGCCTAGTTACATTTCATGA
66 AGTTCGGATGCCTAGTTACATTTCATGA
* * *
83898558 ACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 ACTCGGACTCAACTCAACAAGCTCGGAAATTCGCACCCATAAGTGAACTCGGACTCAACTCAACG
83898623 AGTTCGGATGC
66 AGTTCGGATGC
83898634 TCAACCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
ACTCGGACTCAACTCAACAAGCTCGGAAATTCGCACCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTTCATGA
Found at i:83898630 original size:46 final size:45
Alignment explanation
Indices: 83898458--83898630 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
83898448 AACCCGCCCC
* * * ** *
83898458 TAAGTGTACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCACCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGAATTCGCATCCA
* * *
83898504 TAAGTGAACTCGGACTCAACTCAAGGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATTCGC-A--TCCA
*
83898550 TTTCA-TGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-AATTCGCATCCA
83898597 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83898631 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 5 0.05
46 58 0.55
47 31 0.30
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATTCGCATCCA
Found at i:83900499 original size:27 final size:27
Alignment explanation
Indices: 83900469--83900550 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 27
83900459 TAACATGAAC
*
83900469 GAATGCCTTTGTGGCAAACTTTGTAAG
1 GAATGCCTTTGTGGCAAACTCTGTAAG
***
83900496 GAATTAATTTGTGGCAAACTCTGTAAG
1 GAATGCCTTTGTGGCAAACTCTGTAAG
* *
83900523 GAATGCCTTCGTGGCACACTCT-TAAG
1 GAATGCCTTTGTGGCAAACTCTGTAAG
83900549 GA
1 GA
83900551 CCGCCCTTAC
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (27 bp):
GAATGCCTTTGTGGCAAACTCTGTAAG
Found at i:83902391 original size:48 final size:48
Alignment explanation
Indices: 83902249--83902431 Score: 166
Period size: 48 Copynumber: 3.9 Consensus size: 48
83902239 CACGTAGTAA
*
83902249 GATGCCAATGCCATATCCCAAATATGGTCTTACATGGGAT--CAT-T-
1 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATCACATATC
* * * * * * *
83902293 GAT-CGAA-GCCGATA-GCCTAGCTATGGCCTTACATGATG-TCTCATATC
1 GATGCCAATGCC-ATATCCCAAAC-ATGGTCTTACATG-GGATCACATATC
*** *
83902340 GATGCCAATGCCATATCCCATGTATGTTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATCACATATC
*
83902388 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATCACA
83902432 CATAACCCTA
Statistics
Matches: 107, Mismatches: 21, Indels: 18
0.73 0.14 0.12
Matches are distributed among these distances:
42 6 0.06
43 19 0.18
44 4 0.04
45 3 0.03
46 1 0.01
47 4 0.04
48 64 0.60
49 6 0.06
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAAACATGGTCTTACATGGGATCACATATC
Found at i:83910272 original size:48 final size:48
Alignment explanation
Indices: 83910214--83910599 Score: 655
Period size: 48 Copynumber: 8.0 Consensus size: 48
83910204 ATATACACAC
* * *
83910214 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83910262 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83910310 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83910358 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83910406 ACCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
83910454 ATCTCATATATATTTCATATTAGCCATTCGTCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83910502 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83910550 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83910598 AT
1 AT
83910600 ATTTATCTTG
Statistics
Matches: 317, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 317 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:83914518 original size:27 final size:26
Alignment explanation
Indices: 83914478--83914559 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
83914468 AACATGGCTG
* * *
83914478 CCAGAACAAATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
83914504 CCAGATATAGATATTGTGGCAAAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
83914531 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
83914558 CC
1 CC
83914560 GGTATACTCC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 11 0.23
27 36 0.77
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:83919879 original size:93 final size:93
Alignment explanation
Indices: 83919767--83919938 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
83919757 CGCCCATAAG
* *
83919767 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAGTGAACTCGGACTCAACTC
*
83919831 AATGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
83919860 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
83919925 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83919939 TCAATCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83919933 original size:46 final size:46
Alignment explanation
Indices: 83919760--83919935 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
83919750 TGTAACCCGC
* * *
83919760 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACAT
* *
83919806 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
*
83919856 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
83919899 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83919936 TGCTCAATCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:83927451 original size:93 final size:93
Alignment explanation
Indices: 83927339--83927509 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
83927329 GCCCATAAGT
*
83927339 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83927403 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
83927432 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83927497 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83927510 TCAATCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83927504 original size:46 final size:46
Alignment explanation
Indices: 83927331--83927506 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
83927321 TGTAACCCGC
* *
83927331 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
83927377 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
83927427 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
83927470 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83927507 TGCTCAATCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 62 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83929560 original size:26 final size:26
Alignment explanation
Indices: 83929531--83929580 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
83929521 TCACATTGTA
*
83929531 TGCCCATTGGAGTTTATTCATTCATC
1 TGCCCATTGGAGTTCATTCATTCATC
*
83929557 TGCCCATTGGTGTTCATTCATTCA
1 TGCCCATTGGAGTTCATTCATTCA
83929581 CATCATTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (26 bp):
TGCCCATTGGAGTTCATTCATTCATC
Found at i:83934788 original size:40 final size:40
Alignment explanation
Indices: 83934733--83934924 Score: 255
Period size: 40 Copynumber: 4.8 Consensus size: 40
83934723 CGGATGATAA
* *
83934733 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
83934773 CCGGGCTAGGTCCCGAAGGCA-TTGTTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAATT
83934813 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
**
83934853 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* * * *
83934893 CCAGGCTAAGTCCCAAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83934925 AGCTATATCC
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 5 0.04
40 129 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:83934866 original size:80 final size:80
Alignment explanation
Indices: 83934733--83934950 Score: 266
Period size: 80 Copynumber: 2.7 Consensus size: 80
83934723 CGGATGATAA
* * *
83934733 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAGGTCCCGAAGGCA-TT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTT
**
83934796 GTTGCGAGTTACTA-ATT
65 G-TGCGAACTACTATA-T
83934813 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
83934878 TGCGAACTACTATAT
66 TGCGAACTACTATAT
* * * * * *
83934893 CCAGGCTAAGTCCCAAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
83934951 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 102 0.83
81 5 0.04
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAACTACTATAT
Found at i:83934931 original size:40 final size:39
Alignment explanation
Indices: 83934736--83934950 Score: 231
Period size: 40 Copynumber: 5.4 Consensus size: 39
83934726 ATGATAACCG
* *
83934736 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-TCCA
* *
83934776 GGCTAGGTCCCGAAGGCA-TTGTTGCGAGTTACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTG-TGCGAG-TACTATA-TCCA
*
83934816 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCA
*
83934856 GGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATATCCA
* * *
83934896 GGCTAAGTCCCAAAGGCATTCGAGCGAGTAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATCCA
* *
83934935 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
83934951 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 19 0.12
40 132 0.84
41 6 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCA
Found at i:83954343 original size:79 final size:81
Alignment explanation
Indices: 83954208--83954391 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
83954198 TGAATGATGT
*
83954208 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
83954272 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
83954288 CTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
83954350 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
83954367 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83954392 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:83954398 original size:40 final size:40
Alignment explanation
Indices: 83954207--83954391 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
83954197 TTGAATGATG
* * * *
83954207 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
83954247 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83954287 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83954326 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
83954367 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83954392 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83954413 original size:79 final size:79
Alignment explanation
Indices: 83954260--83954424 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
83954250 GGACTAAGAT
* * **
83954260 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
83954325 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
83954339 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
83954402 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
83954418 CCGAAGG
1 CCGAAGG
83954425 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:83958698 original size:19 final size:20
Alignment explanation
Indices: 83958661--83958698 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83958651 ATAAGGTGGT
83958661 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
83958681 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
83958699 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:83961777 original size:16 final size:17
Alignment explanation
Indices: 83961758--83961801 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
83961748 GGCAAAAGCT
* *
83961758 GAAATGCCGAAAAT-TC
1 GAAAAGCCGAAAATGCC
83961774 GAAAAGCC-AAAATGCC
1 GAAAAGCCGAAAATGCC
83961790 GAAAAGCCGAAA
1 GAAAAGCCGAAA
83961802 GTTGGGCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 5 0.21
16 16 0.67
17 3 0.12
ACGTcount: A:0.50, C:0.20, G:0.20, T:0.09
Consensus pattern (17 bp):
GAAAAGCCGAAAATGCC
Found at i:83961800 original size:8 final size:8
Alignment explanation
Indices: 83961751--83961801 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
83961741 ATGAATCGGC
*
83961751 AAAAGCTG
1 AAAAGCCG
*
83961759 AAATGCCG
1 AAAAGCCG
**
83961767 AAAATTCG
1 AAAAGCCG
83961775 AAAAGCC-
1 AAAAGCCG
83961782 AAAATGCCG
1 AAAA-GCCG
83961791 AAAAGCCG
1 AAAAGCCG
83961799 AAA
1 AAA
83961802 GTTGGGCTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
7 4 0.12
8 26 0.76
9 4 0.12
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10
Consensus pattern (8 bp):
AAAAGCCG
Found at i:83962067 original size:29 final size:29
Alignment explanation
Indices: 83962017--83962088 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
83962007 GCATGAATAT
* * *
83962017 AATATGATTTGGGCCTAATGGGCCATACG
1 AATATGAATTGGGCATAATGGGCCATAAG
* * *
83962046 AATGTGACTTGGGCATAGTGGGCCATAAG
1 AATATGAATTGGGCATAATGGGCCATAAG
83962075 AATATGAATTGGGC
1 AATATGAATTGGGC
83962089 CAGATGGGCC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
AATATGAATTGGGCATAATGGGCCATAAG
Found at i:83962096 original size:29 final size:28
Alignment explanation
Indices: 83962017--83962117 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
83962007 GCATGAATAT
* *
83962017 AATATGATTTGGGCCTAATGGGCCATACG
1 AATATGAATTGGGCC-AATGGGCCATAAG
* *
83962046 AATGTGACTTGGG-CATAGTGGGCCATAAG
1 AATATGAATTGGGCCA-A-TGGGCCATAAG
**
83962075 AATATGAATTGGGCCAGATGGGCCATTTG
1 AATATGAATTGGGCCA-ATGGGCCATAAG
*
83962104 AATAAG-ATTGGGCC
1 AATATGAATTGGGCC
83962118 TAGTAGTCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
27 1 0.02
28 10 0.17
29 46 0.77
30 3 0.05
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
AATATGAATTGGGCCAATGGGCCATAAG
Found at i:83975633 original size:40 final size:43
Alignment explanation
Indices: 83975560--83975649 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 43
83975550 TAAACTGTAT
*
83975560 CTATCTCAATATCGCACACTTAGTG-C-CACATATAGCCGAAG
1 CTATCTCAATATCGCACACTAAGTGTCACACATATAGCCGAAG
* * * *
83975601 CTATTTCAAT-TCGCACACTAAGTGTTATATATATAGCCGAAG
1 CTATCTCAATATCGCACACTAAGTGTCACACATATAGCCGAAG
83975643 CTATCTC
1 CTATCTC
83975650 GAAACGCACA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
40 13 0.32
41 9 0.22
42 19 0.46
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (43 bp):
CTATCTCAATATCGCACACTAAGTGTCACACATATAGCCGAAG
Found at i:83976432 original size:36 final size:36
Alignment explanation
Indices: 83976385--83976459 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
83976375 TTCTTTCTCT
83976385 TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
1 TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
83976421 TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
1 TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
83976457 TTT
1 TTT
83976460 GGCTTTATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.45, C:0.05, G:0.13, T:0.36
Consensus pattern (36 bp):
TTTAATTTTGTTCAAAAAGATGAATAAAGATGAACA
Found at i:83979876 original size:17 final size:18
Alignment explanation
Indices: 83979854--83979887 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83979844 CACATTGAAG
83979854 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
83979871 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
83979888 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:83981152 original size:28 final size:28
Alignment explanation
Indices: 83981106--83981202 Score: 115
Period size: 28 Copynumber: 3.5 Consensus size: 28
83981096 TGGCCTCTTT
* *
83981106 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATACATATGGCCCATC
83981134 -GAGCCCAATCACATACATATGGCCCATC
1 AG-GCCCAATCACATACATATGGCCCATC
* ** *
83981162 AGGCCCAATCACTTTGATATGGCCCGTC
1 AGGCCCAATCACATACATATGGCCCATC
*
83981190 AGGCCCAGTCACA
1 AGGCCCAATCACA
83981203 CTCTTAGTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.02
28 57 0.97
29 1 0.02
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
AGGCCCAATCACATACATATGGCCCATC
Found at i:83988887 original size:28 final size:28
Alignment explanation
Indices: 83988856--83988942 Score: 93
Period size: 28 Copynumber: 3.1 Consensus size: 28
83988846 CATCTGATTT
***
83988856 ATATGGCCCATTGGGCCCAATCACATTC
1 ATATGGCCCATCAAGCCCAATCACATTC
* *
83988884 ATATGACCCATCAAGCCCAATCACTTTC
1 ATATGGCCCATCAAGCCCAATCACATTC
* * * *
83988912 ATATGGCCCGTCAGGTCCAATCACACTC
1 ATATGGCCCATCAAGCCCAATCACATTC
83988940 ATA
1 ATA
83988943 GTCATGCAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (28 bp):
ATATGGCCCATCAAGCCCAATCACATTC
Found at i:83989478 original size:20 final size:21
Alignment explanation
Indices: 83989450--83989488 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
83989440 ACCAAACAAC
*
83989450 AAGTGACTCGT-AATCATCTT
1 AAGTCACTCGTAAATCATCTT
*
83989470 AAGTCACTCTTAAATCATC
1 AAGTCACTCGTAAATCATC
83989489 CATGACCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (21 bp):
AAGTCACTCGTAAATCATCTT
Found at i:83995322 original size:40 final size:39
Alignment explanation
Indices: 83995285--83995508 Score: 247
Period size: 39 Copynumber: 5.6 Consensus size: 39
83995275 GCTACTCGTT
* *
83995285 CAAATGCCTTCCGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTT-CGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
83995325 GAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GACTTAGCCCGGAATTAGTAACTCGCA
* *
83995365 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
* *
83995404 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
83995443 CAAATGCCTTCGGATCTTAGTCCGGATATGA-TCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
83995484 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
83995509 CATCAGTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 77 0.47
40 70 0.43
41 16 0.10
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:83995468 original size:118 final size:120
Alignment explanation
Indices: 83995287--83995508 Score: 276
Period size: 118 Copynumber: 1.9 Consensus size: 120
83995277 TACTCGTTCA
* *
83995287 AATGCCTTCCGGACATAGCCCGGTTATAGTAACTCGCAGAAATGCCTTCGAGACTTAACCCGGAT
1 AATGCCTTCCGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
* * *
83995352 -TTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
66 ATGA-TAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * **
83995406 AATGCCTT-CGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCG-GATCTTAGTCCGG
1 AATGCCTTCCGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
*
83995468 ATATGATCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATGATAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
83995509 CATCAGTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
117 3 0.03
118 60 0.68
119 25 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCCGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
ATGATAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:83997512 original size:27 final size:26
Alignment explanation
Indices: 83997481--83997658 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 26
83997471 TAAATTGTAC
83997481 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
83997508 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCG--ATTGACTATGT
* *
83997534 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
83997562 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGC--GATTGACTATGT
* * *
83997590 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
83997617 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
83997644 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83997659 GGCTCAATAA
Statistics
Matches: 126, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
26 7 0.06
27 92 0.73
28 24 0.19
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:83997542 original size:54 final size:54
Alignment explanation
Indices: 83997482--83997632 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 54
83997472 AAATTGTACA
*
83997482 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT-
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGGACTATG-TG
* ** *
83997536 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
* *
83997591 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGA
83997633 GTTGATTATA
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
54 42 0.50
55 42 0.50
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
Found at i:83997622 original size:82 final size:81
Alignment explanation
Indices: 83997482--83997637 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 81
83997472 AAATTGTACA
* * *
83997482 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
83997547 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * *
83997563 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAAG
*
83997626 TGTGCGAGTTGA
63 TGTGCGAATTGA
83997638 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:83997649 original size:82 final size:81
Alignment explanation
Indices: 83997478--83997658 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
83997468 GATTAAATTG
* * *
83997478 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAA
83997543 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
83997559 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCAC
* **
83997622 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
83997641 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
83997659 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 22 0.27
82 60 0.73
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84014186 original size:79 final size:81
Alignment explanation
Indices: 84014077--84014259 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
84014067 TACTCGTTCA
* * *
84014077 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAGAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
84014140 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
84014157 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
84014220 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
84014236 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
84014260 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:84014259 original size:40 final size:40
Alignment explanation
Indices: 84014056--84014259 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
84014046 CAGAATTTAA
** *
84014056 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
84014096 CCGGTTATAGTAACTCGCAGAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84014136 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84014175 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
84014215 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
84014255 CCGGA
1 CCGGA
84014260 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84015547 original size:24 final size:24
Alignment explanation
Indices: 84015503--84015548 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
84015493 AGGATGGACA
*
84015503 CATTTTTTTTTCTTTTGTTTTCAT
1 CATTTTTTTCTCTTTTGTTTTCAT
84015527 CATTTTCTTTCTCTTTT-TTTTC
1 CATTTT-TTTCTCTTTTGTTTTC
84015549 CATTTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.74
Consensus pattern (24 bp):
CATTTTTTTCTCTTTTGTTTTCAT
Found at i:84019620 original size:33 final size:33
Alignment explanation
Indices: 84019583--84019649 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
84019573 CGATGGTTAG
84019583 AATTGCTAAAAGACTA-TGAGCTTATAATTGACT
1 AATTGCTAAAAGACTACT-AGCTTATAATTGACT
*
84019616 AATTGCTAAAAGACTACTAGTTTATAATTGACT
1 AATTGCTAAAAGACTACTAGCTTATAATTGACT
84019649 A
1 A
84019650 TCATCCGAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.34
Consensus pattern (33 bp):
AATTGCTAAAAGACTACTAGCTTATAATTGACT
Found at i:84032444 original size:27 final size:26
Alignment explanation
Indices: 84032347--84032455 Score: 85
Period size: 27 Copynumber: 4.1 Consensus size: 26
84032337 AGCAAAGCTG
* * **
84032347 CCAGTAATAATAATGTAGCATAGCTG
1 CCAGTAATAGTAATGTGGCATAGCCA
* * *
84032373 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAATAGT-AATGTGGCATAGCCA
*
84032400 CTAGT-ATCAGTAATTGTGGCATAGCCA
1 CCAGTAAT-AGTAA-TGTGGCATAGCCA
* *
84032427 CCAGTAATAGTGAATGTGACATAGTCA
1 CCAGTAATAGT-AATGTGGCATAGCCA
84032454 CC
1 CC
84032456 TCCATATCAA
Statistics
Matches: 64, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
26 11 0.17
27 49 0.77
28 4 0.06
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (26 bp):
CCAGTAATAGTAATGTGGCATAGCCA
Found at i:84032606 original size:27 final size:27
Alignment explanation
Indices: 84032587--84032748 Score: 243
Period size: 27 Copynumber: 6.0 Consensus size: 27
84032577 GGCATAATCA
*
84032587 TCATTTTACCCTATAGGGGCATTACAG
1 TCATTTTACCCTATAGGGGCATTACGG
* *
84032614 TCATTTTACCCTACAGGGACATTACGG
1 TCATTTTACCCTATAGGGGCATTACGG
* * *
84032641 TCATTCTACCTTACAGGGGCATTACGG
1 TCATTTTACCCTATAGGGGCATTACGG
*
84032668 TCATTTTACCCTATAAGGGCATTACGG
1 TCATTTTACCCTATAGGGGCATTACGG
* *
84032695 TGATTTTACCCTATAGGGGCATTATGG
1 TCATTTTACCCTATAGGGGCATTACGG
84032722 TCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTATAGGGGCATTACGG
84032749 CCAGATAACG
Statistics
Matches: 120, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGCATTACGG
Found at i:84033322 original size:15 final size:15
Alignment explanation
Indices: 84033302--84033333 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
84033292 CTTAATCACT
84033302 TAAACCACAACCACC
1 TAAACCACAACCACC
*
84033317 TAAACCATAACCACC
1 TAAACCACAACCACC
84033332 TA
1 TA
84033334 CTTTGCTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.41, G:0.00, T:0.12
Consensus pattern (15 bp):
TAAACCACAACCACC
Found at i:84041154 original size:27 final size:26
Alignment explanation
Indices: 84041123--84041300 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
84041113 TAAATTGTAC
84041123 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
84041150 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
84041176 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
84041204 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
84041232 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
84041259 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
84041286 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84041301 GGCTCGATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:84041239 original size:82 final size:81
Alignment explanation
Indices: 84041124--84041279 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
84041114 AAATTGTACA
* * *
84041124 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
84041188 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
84041205 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
84041270 TGCGAGTTGA
65 TGCGAATTGA
84041280 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84041291 original size:82 final size:81
Alignment explanation
Indices: 84041120--84041300 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
84041110 GATTAAATTG
* * *
84041120 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84041185 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84041201 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84041265 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84041283 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84041301 GGCTCGATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84048444 original size:27 final size:26
Alignment explanation
Indices: 84048413--84048590 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
84048403 TAAATTGTAC
84048413 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
84048440 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
84048466 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
84048494 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
84048522 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
84048549 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
84048576 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84048591 GGCTCGATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:84048529 original size:82 final size:81
Alignment explanation
Indices: 84048414--84048569 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
84048404 AAATTGTACA
* * *
84048414 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
84048478 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
84048495 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
84048560 TGCGAGTTGA
65 TGCGAATTGA
84048570 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84048581 original size:82 final size:81
Alignment explanation
Indices: 84048410--84048590 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
84048400 GATTAAATTG
* * *
84048410 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84048475 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84048491 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84048555 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84048573 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84048591 GGCTCGATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84052540 original size:85 final size:85
Alignment explanation
Indices: 84052436--84052614 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
84052426 GGCCGGCCAT
84052436 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
84052501 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAACAAAATAAA
84052521 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
84052586 GTAAGGATTAACAAAATAAA
66 GTAAGGATTAACAAAATAAA
*
84052606 GGGCATGGG
1 GAGCATGGG
84052615 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAACAAAATAAA
Found at i:84053936 original size:47 final size:47
Alignment explanation
Indices: 84053882--84054290 Score: 561
Period size: 47 Copynumber: 8.6 Consensus size: 47
84053872 TATTTGAATA
*
84053882 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
84053929 AATGTGAAATTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
84053978 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
84054025 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
84054074 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
84054123 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
84054170 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
84054217 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
84054264 GATGTGGAAGTGTATAAATGAGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
84054291 TCCCGAAGGG
Statistics
Matches: 333, Mismatches: 23, Indels: 12
0.90 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 196 0.59
49 135 0.41
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:84053990 original size:96 final size:95
Alignment explanation
Indices: 84053882--84054290 Score: 565
Period size: 96 Copynumber: 4.3 Consensus size: 95
84053872 TATTTGAATA
*
84053882 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAATTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-TGTATATA
* * *
84053947 TATGTGATAAGGCCTAATGGCCGATGTAATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
84053978 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-TGTATATA
* *
84054043 TATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
84054074 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG--TG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-ATGTATA
*
84054137 TATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
84054170 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGACCAATGTGATGAATGTGAAA-GTGTATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAATGTATATA
84054233 TATGTGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
84054264 GATGTGGAAGTGTATAAATGAGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
84054291 TCCCGAAGGG
Statistics
Matches: 286, Mismatches: 20, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
92 1 0.00
93 2 0.01
94 94 0.33
96 145 0.51
97 1 0.00
98 42 0.15
99 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (95 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAATGTATATAT
ATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:84056910 original size:40 final size:40
Alignment explanation
Indices: 84056848--84057088 Score: 322
Period size: 40 Copynumber: 6.0 Consensus size: 40
84056838 AGGTCTCGAC
84056848 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
84056887 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
84056927 GATGTATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
84056967 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * ** * *
84057007 GATATATCTGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
84057047 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
84057087 GA
1 GA
84057089 CGTGTATTCG
Statistics
Matches: 177, Mismatches: 24, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
39 4 0.02
40 173 0.98
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:84058452 original size:44 final size:44
Alignment explanation
Indices: 84058325--84058452 Score: 101
Period size: 40 Copynumber: 3.0 Consensus size: 44
84058315 GGCCGGCCAT
84058325 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
* * ** * * *
84058369 CATG-TTGGGTAGTG-CATTATG-TAAGGATTAATAA-A----ATAAA
1 GA-GCATGGGT-G-GACAAGATGTTATGG-CTAAAAACATGTCATAAA
84058409 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
84058453 CATGTTGGGG
Statistics
Matches: 58, Mismatches: 14, Indels: 24
0.60 0.15 0.25
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 16 0.28
44 16 0.28
45 12 0.21
46 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (44 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
Found at i:84059823 original size:47 final size:47
Alignment explanation
Indices: 84059769--84060365 Score: 826
Period size: 47 Copynumber: 12.6 Consensus size: 47
84059759 TATTTGAATA
* *
84059769 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
84059816 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
84059865 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
84059912 AATGTGAAAGTGTATATATATGTGTTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
84059961 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
84060008 AATGTGAAAGTATATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
84060057 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
84060104 AATGTGAACA-TGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
84060151 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
84060198 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
84060245 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
84060292 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
84060339 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
84060366 TCCCGAAGGG
Statistics
Matches: 517, Mismatches: 25, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 381 0.74
49 134 0.26
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:84064797 original size:23 final size:23
Alignment explanation
Indices: 84064767--84064811 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
84064757 TTCAATTTGG
84064767 TCCTTATTTTCCAATTAGACACT
1 TCCTTATTTTCCAATTAGACACT
84064790 TCCTTATTTTCCAATTAGACAC
1 TCCTTATTTTCCAATTAGACAC
84064812 CTTACTCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.04, T:0.42
Consensus pattern (23 bp):
TCCTTATTTTCCAATTAGACACT
Found at i:84067953 original size:15 final size:15
Alignment explanation
Indices: 84067933--84067973 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
84067923 ATAGAGAATC
84067933 ATTTCATGATTGATG
1 ATTTCATGATTGATG
84067948 ATTTCATGATTGATG
1 ATTTCATGATTGATG
84067963 ATTTCATGATT
1 ATTTCATGATT
84067974 TAAATATGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.27, C:0.07, G:0.17, T:0.49
Consensus pattern (15 bp):
ATTTCATGATTGATG
Found at i:84067958 original size:8 final size:8
Alignment explanation
Indices: 84067933--84067974 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
84067923 ATAGAGAATC
84067933 ATTTCATG
1 ATTTCATG
*
84067941 A-TTGATG
1 ATTTCATG
84067948 ATTTCATG
1 ATTTCATG
*
84067956 A-TTGATG
1 ATTTCATG
84067963 ATTTCATG
1 ATTTCATG
84067971 ATTT
1 ATTT
84067975 AAATATGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 12 0.43
8 16 0.57
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (8 bp):
ATTTCATG
Found at i:84078882 original size:27 final size:27
Alignment explanation
Indices: 84078848--84079067 Score: 251
Period size: 27 Copynumber: 8.1 Consensus size: 27
84078838 GGGCATAATC
*
84078848 GTCATTTTACCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
84078875 CTCGTTTTACCCTATAGGGACATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
84078902 GTCATTCTACCTTACAGAGGCATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
84078929 TTCTTTTTACCCTACATGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
**
84078956 GTCATTTTACCCTACAAAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
84078983 GTCATTTTACCTTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* ** *
84079010 TTCATTTTACCCTACAATGGCATTAAG
1 GTCATTTTACCCTACAGGGGCATTACG
*
84079037 GTCATTTTACCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
84079064 GTCA
1 GTCA
84079068 GATAACGACC
Statistics
Matches: 158, Mismatches: 35, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 158 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:84078980 original size:81 final size:81
Alignment explanation
Indices: 84078836--84079067 Score: 283
Period size: 81 Copynumber: 2.9 Consensus size: 81
84078826 TACAGAACAT
* * ** * *
84078836 AAGGGCATAATCG-TCATTTTACCCTACAGGGGCATTACACTCGTTTTACCCTA-TAGGGACATT
1 AAGGGCATTA-CGTTCATTTTACCCTACATGGGCATTACGGTCATTTTACCCTACAAGGG-CATT
84078899 ACGGTCATTCTACCTTAC
64 ACGGTCATTCTACCTTAC
* * *
84078917 -AGAGGCATTATGTTCTTTTTACCCTACATGGGCATTACGGTCATTTTACCCTACAAAGGCATTA
1 AAG-GGCATTACGTTCATTTTACCCTACATGGGCATTACGGTCATTTTACCCTACAAGGGCATTA
*
84078981 CGGTCATTTTACCTTAC
65 CGGTCATTCTACCTTAC
* *
84078998 AAGGGCATTACGTTCATTTTACCCTACAAT-GGCATTAAGGTCATTTTACCCTACAGGGGCATTA
1 AAGGGCATTACGTTCATTTTACCCTAC-ATGGGCATTACGGTCATTTTACCCTACAAGGGCATTA
*
84079062 CAGTCA
65 CGGTCA
84079068 GATAACGACC
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
80 3 0.02
81 120 0.92
82 7 0.05
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (81 bp):
AAGGGCATTACGTTCATTTTACCCTACATGGGCATTACGGTCATTTTACCCTACAAGGGCATTAC
GGTCATTCTACCTTAC
Done.