Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 259 of 356
Found at i:85068417 original size:102 final size:102
Alignment explanation
Indices: 85068197--85068848 Score: 967
Period size: 99 Copynumber: 6.6 Consensus size: 102
85068187 TTCTCTTCAC
85068197 CTTCTACCTCAT-C--CTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
1 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
*
85068259 TCTTTCTTTCCCTCTTCTAA----T--TCTTCAGCTT
66 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTT
85068290 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
1 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
*
85068355 TCTTTCTTTCCCTCTTCTGATTCTTCATCTTCATCTT
66 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTT
85068392 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
1 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
85068457 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCA---T
66 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTT
* *
85068491 CTTCTACCTCATCCTTGTTCTTCTTTTCTTTCTTCTTCTCCTTTGCTTCTTTGTCTTTCTTCTTT
1 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
*
85068556 TCTTTTTTTCCCTCTTCTAATTC-T--TCTTCATCTT
66 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTT
*
85068590 CTTCTACCTCATCCTTCTT-TTC-TTTC-TTCTTC-TCT--TTTGCCTCTTTGTCTTTCTCCTTT
1 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
85068649 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATC-T
66 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTT
* * * *
85068685 C--CTACATCATCCTTCTTCTTCTTCTCTTTCTTCTTTTCCTTTGCTTCTTTGTCTTTCTTCTTT
1 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
* *
85068748 TCTTTCTTTCCCTCTTCTATTTCTTCATCTTCATCTC
66 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTT
* * * * *
85068785 CTTCTACTTTATCCTTATTCTTTTCTTTC-TTCTTCTCCTCCTTTGCCTCTTTGTCTTTCTTCTT
1 CTTCTACCTCATCCTTCTTCTTCT-TTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTT
85068849 CTCTGTCTCT
Statistics
Matches: 509, Mismatches: 25, Indels: 41
0.89 0.04 0.07
Matches are distributed among these distances:
93 71 0.14
94 5 0.01
95 8 0.02
96 94 0.18
97 6 0.01
98 4 0.01
99 161 0.32
100 2 0.00
102 155 0.30
103 3 0.01
ACGTcount: A:0.06, C:0.33, G:0.03, T:0.59
Consensus pattern (102 bp):
CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTT
Found at i:85068698 original size:192 final size:194
Alignment explanation
Indices: 85068197--85068848 Score: 992
Period size: 192 Copynumber: 3.3 Consensus size: 194
85068187 TTCTCTTCAC
85068197 CTTCTACCTCATCCTTCTTCTTTTCTTTCTTCTTCTC-CTTTGCCTCTTTGTCTTTCTTCTTTTC
1 CTTCTACCTCAT-C--CTTCTTTTCTTTCTTCTTCTCTCTTTGCCTCTTTGTCTTTCTTCTTTTC
*
85068261 TTTCTTTCCCTCTTCTAATTCTTCAGCTTC-T-TCTACCTCATCCTTCTTCTTCTTTTCTTTCTT
63 TTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTCTACCTCATCCTTCTTCTTCTTTTCTTTCTT
* *
85068324 CTTCTCCTTTGCCTCTTTGTCTTTCTTCTTTTCTTTCTTTCCCTCTTCTGATTCTTCATCTTCAT
128 CTTCTCCTTTGCTTCTTTGTCTTTCTTCTTTTCTTTCTTTCCCTCTTCTAATTCTT-ATCTTCAT
85068389 CTT
192 CTT
85068392 CTTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTTCTCCTTTGCCTCTTTGTCTTTCTTCTTT
1 CTTCTACCTCATCCTTCTT-TTC-TTTC-TTCTTC-TCT-CTTTGCCTCTTTGTCTTTCTTCTTT
*
85068457 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATCTTCTACCTCATCCTTGTTCTTCTTTTCTTT
61 TCTTTCTTTCCCTCTTCTAATTCTTCATCTTCATC-TCTACCTCATCCTTCTTCTTCTTTTCTTT
*
85068522 CTTCTTCTCCTTTGCTTCTTTGTCTTTCTTCTTTTCTTTTTTTCCCTCTTCTAATTC-T-TCTTC
125 CTTCTTCTCCTTTGCTTCTTTGTCTTTCTTCTTTTCTTTCTTTCCCTCTTCTAATTCTTATCTTC
85068585 ATCTT
190 ATCTT
*
85068590 CTTCTACCTCATCCTTCTTTTCTTTCTTCTTCTCT-TTTGCCTCTTTGTCTTTCTCCTTTTCTTT
1 CTTCTACCTCATCCTTCTTTTCTTTCTTCTTCTCTCTTTGCCTCTTTGTCTTTCTTCTTTTCTTT
* *
85068654 CTTTCCCTCTTCTAATTCTTCATCTTCATCTCCTACATCATCCTTCTTCTTCTTCTCTTTCTTCT
66 CTTTCCCTCTTCTAATTCTTCATCTTCATCT-CTACCTCATCCTTCTTCTTCTTTTCTTTCTTCT
* *
85068719 TTTCCTTTGCTTCTTTGTCTTTCTTCTTTTCTTTCTTTCCCTCTTCTATTTCTTCATCTTCATCT
130 TCTCCTTTGCTTCTTTGTCTTTCTTCTTTTCTTTCTTTCCCTCTTCTAATTCTT-ATCTTCATCT
*
85068784 C
194 T
* *
85068785 CTTCTACTTTATCCTTATTCTTTTCTTTCTTCTTCTCCTCCTTTGCCTCTTTGTCTTTCTTCTT
1 CTTCTACCTCATCC---TTCTTTTCTTTCTTCTTCT-CT-CTTTGCCTCTTTGTCTTTCTTCTT
85068849 CTCTGTCTCT
Statistics
Matches: 422, Mismatches: 16, Indels: 32
0.90 0.03 0.07
Matches are distributed among these distances:
191 1 0.00
192 143 0.34
193 4 0.01
194 8 0.02
195 45 0.11
196 6 0.01
197 3 0.01
198 104 0.25
199 3 0.01
200 1 0.00
201 104 0.25
ACGTcount: A:0.06, C:0.33, G:0.03, T:0.59
Consensus pattern (194 bp):
CTTCTACCTCATCCTTCTTTTCTTTCTTCTTCTCTCTTTGCCTCTTTGTCTTTCTTCTTTTCTTT
CTTTCCCTCTTCTAATTCTTCATCTTCATCTCTACCTCATCCTTCTTCTTCTTTTCTTTCTTCTT
CTCCTTTGCTTCTTTGTCTTTCTTCTTTTCTTTCTTTCCCTCTTCTAATTCTTATCTTCATCTT
Found at i:85069091 original size:18 final size:17
Alignment explanation
Indices: 85069068--85069116 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
85069058 TCTCCTTATG
* *
85069068 CTTCTTTTCTTTTTTCTT
1 CTTCTTCTCTTCTTTC-T
85069086 CTTCTTCTCTTCTTTCT
1 CTTCTTCTCTTCTTTCT
*
85069103 CTTCATCATCTTCT
1 CTTCTTC-TCTTCT
85069117 ACCACCTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 7 0.26
18 20 0.74
ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65
Consensus pattern (17 bp):
CTTCTTCTCTTCTTTCT
Found at i:85073803 original size:3 final size:3
Alignment explanation
Indices: 85073761--85074091 Score: 133
Period size: 3 Copynumber: 108.7 Consensus size: 3
85073751 ATTTAATATA
* * * *
85073761 TAT TAT TACT TAC TAT T-T TAC TAT TAT TGT CTAA TA- TAT TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* * * * * * *
85073806 TGT CAC TAT TAT TAT TAC T-T TAC TAT TGT AATT TAT GGTAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT --TAT TAT TAT
* * * *
85073853 TAT TAT TAT TAT TAT TAT TAT TAT TAGT GACC TAT TAC TAT TCT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT
* * * * * *
85073900 TAG CA- TAC TAT TAT T-T CCTAT T-T TA- TAT TAT TAT TGT TAT CAA
1 TAT TAT TAT TAT TAT TAT --TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * **
85073943 CAT ATAT TAT TAT CAT TAAT GTAT TGT TAT TCCC TAT TAT TAT TAT TAT
1 TAT -TAT TAT TAT TAT T-AT -TAT TAT TAT T-AT TAT TAT TAT TAT TAT
* * * * * * * *
85073992 TAT TAT TAC TAT TAT AAA TAT TCT TAT TAT TAC TAC TAT TTT TAT TCCT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* *
85074041 T-T TAT TATT TAT TAT CAA TA- TAT TAT TAT TAT TAT TAT TAT T-T
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
85074084 TAT TAT TA
1 TAT TAT TA
85074092 CTACTACTAA
Statistics
Matches: 240, Mismatches: 64, Indels: 48
0.68 0.18 0.14
Matches are distributed among these distances:
2 17 0.07
3 196 0.82
4 22 0.09
5 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:85074074 original size:20 final size:20
Alignment explanation
Indices: 85074042--85074091 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
85074032 TTTATTCCTT
85074042 TTATTATTTATTATCAATATA
1 TTATTA-TTATTATCAATATA
* * *
85074063 TTATTATTATTATTATTATT
1 TTATTATTATTATCAATATA
85074083 TTATTATTA
1 TTATTATTA
85074092 CTACTACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
TTATTATTATTATCAATATA
Found at i:85074151 original size:3 final size:3
Alignment explanation
Indices: 85074143--85074199 Score: 51
Period size: 3 Copynumber: 18.0 Consensus size: 3
85074133 TTATTTAACA
* * *
85074143 TAT TAT TAT TAT TAAT TTT TAT TAT CAT TAT TAC TAT CGTAT TAT TAT
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT --TAT TAT TAT
*
85074191 TAC TAT TAT
1 TAT TAT TAT
85074200 ATTTTCATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
3 37 0.86
4 3 0.07
5 3 0.07
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:85074202 original size:17 final size:17
Alignment explanation
Indices: 85074146--85074202 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
85074136 TTTAACATAT
* *
85074146 TATTATTATTAATTTTTA
1 TATTATTATT-ACTATTA
* **
85074164 TTATCATTATTACTATCG
1 -TATTATTATTACTATTA
85074182 TATTATTATTACTATTA
1 TATTATTATTACTATTA
85074199 TATT
1 TATT
85074203 TTCATTTATA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
17 18 0.60
18 3 0.10
19 9 0.30
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTATTATTACTATTA
Found at i:85078373 original size:6 final size:6
Alignment explanation
Indices: 85078362--85078386 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
85078352 ATTTTATAAT
85078362 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
85078387 CAATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:85095197 original size:14 final size:14
Alignment explanation
Indices: 85095178--85095204 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
85095168 TATTAAGGCA
85095178 ATAATTAAGAACAC
1 ATAATTAAGAACAC
85095192 ATAATTAAGAACA
1 ATAATTAAGAACA
85095205 AGAACAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:85097431 original size:8 final size:8
Alignment explanation
Indices: 85097413--85097471 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
85097403 AATAAAGTTC
85097413 AAAATAAA
1 AAAATAAA
*
85097421 AAAAAACAA
1 AAAATA-AA
85097430 AAAATAAA
1 AAAATAAA
85097438 AAAATAAA
1 AAAATAAA
85097446 AATAA-AAA
1 AA-AATAAA
* * *
85097454 TAAAGATA
1 AAAATAAA
85097462 AAAATAAA
1 AAAATAAA
85097470 AA
1 AA
85097472 TAAACATAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
7 2 0.05
8 30 0.73
9 9 0.22
ACGTcount: A:0.85, C:0.02, G:0.02, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:85097438 original size:6 final size:6
Alignment explanation
Indices: 85097413--85097487 Score: 82
Period size: 6 Copynumber: 12.3 Consensus size: 6
85097403 AATAAAGTTC
*
85097413 AAAATA AAAA-A AAACA-A AAAATAAA AAAATA AAAATA AAAATA AAGATA
1 AAAATA AAAATA AAA-ATA AAAAT--A AAAATA AAAATA AAAATA AAAATA
* *
85097462 AAAATA AAAATA AACATA AAGATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
85097488 TGGACTCAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
5 5 0.08
6 50 0.82
8 6 0.10
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:85099160 original size:3 final size:3
Alignment explanation
Indices: 85099152--85099212 Score: 70
Period size: 3 Copynumber: 19.7 Consensus size: 3
85099142 AACAAAAGAC
**
85099152 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT GGACC AAT AAT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT A-AT
85099199 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
85099213 CAAAGAAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
2 2 0.04
3 45 0.90
4 3 0.06
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:85103876 original size:24 final size:24
Alignment explanation
Indices: 85103844--85103892 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
85103834 GGTTGGTAGC
85103844 TTGTTTTGAAGAATAGCTGAACAT
1 TTGTTTTGAAGAATAGCTGAACAT
85103868 TTGTTTTGAAGAATAGCTGAACAT
1 TTGTTTTGAAGAATAGCTGAACAT
85103892 T
1 T
85103893 CCTTGTTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (24 bp):
TTGTTTTGAAGAATAGCTGAACAT
Found at i:85106379 original size:14 final size:14
Alignment explanation
Indices: 85106360--85106386 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
85106350 TATTAAGGCA
85106360 ATAATTAAGAACAC
1 ATAATTAAGAACAC
85106374 ATAATTAAGAACA
1 ATAATTAAGAACA
85106387 AGAACAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:85109262 original size:6 final size:6
Alignment explanation
Indices: 85109247--85109285 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
85109237 GCAAATGGAT
*
85109247 CATTTC CATTTT CATTTC CATTTC CATTTC CATTTC CAT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CAT
85109286 ATTTGGAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.18, C:0.31, G:0.00, T:0.51
Consensus pattern (6 bp):
CATTTC
Found at i:85111789 original size:11 final size:12
Alignment explanation
Indices: 85111761--85111788 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
85111751 TTATACATCT
85111761 TTTTTCTTTTTA
1 TTTTTCTTTTTA
85111773 TTTTTCTTTTTA
1 TTTTTCTTTTTA
85111785 TTTT
1 TTTT
85111789 CCTTCTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTCTTTTTA
Found at i:85122441 original size:18 final size:18
Alignment explanation
Indices: 85122400--85122435 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
85122390 CATTCCGAAG
* *
85122400 TATATATATATATACATA
1 TATATGTATATATACACA
85122418 TATATGTATATATACACA
1 TATATGTATATATACACA
85122436 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:85122948 original size:28 final size:28
Alignment explanation
Indices: 85122911--85123092 Score: 312
Period size: 28 Copynumber: 6.5 Consensus size: 28
85122901 TAAATTGTAC
*
85122911 AGCACTAAGTGTGCGAACTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
85122939 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
85122967 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
85122995 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
85123023 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
85123051 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
85123078 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85123093 GACTTATTAT
Statistics
Matches: 150, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 126 0.84
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:85132263 original size:40 final size:40
Alignment explanation
Indices: 85132208--85132475 Score: 491
Period size: 40 Copynumber: 6.7 Consensus size: 40
85132198 GAGCATTGGA
85132208 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
85132248 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
85132288 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
85132328 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
85132368 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
85132408 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
85132448 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
85132476 CTGTGTTTGC
Statistics
Matches: 223, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 223 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:85135304 original size:18 final size:18
Alignment explanation
Indices: 85135263--85135298 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
85135253 CATTCCGAAG
* *
85135263 TATATATATATATACATA
1 TATATGTATATATACACA
85135281 TATATGTATATATACACA
1 TATATGTATATATACACA
85135299 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:85135810 original size:28 final size:28
Alignment explanation
Indices: 85135772--85135953 Score: 312
Period size: 28 Copynumber: 6.5 Consensus size: 28
85135762 TAAATTGTAC
*
85135772 AGCACTAAGTGTGCGAACTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
85135800 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
85135828 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
85135856 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* *
85135884 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
85135912 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
85135939 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85135954 GACTTATTAT
Statistics
Matches: 150, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 126 0.84
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:85138387 original size:19 final size:19
Alignment explanation
Indices: 85138365--85138404 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
85138355 ATGCCATGTC
85138365 AAGAGTTTTATGTCTATTG
1 AAGAGTTTTATGTCTATTG
85138384 AAGAGTTTTATGTCTATTG
1 AAGAGTTTTATGTCTATTG
85138403 AA
1 AA
85138405 TCATTGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (19 bp):
AAGAGTTTTATGTCTATTG
Found at i:85140756 original size:18 final size:19
Alignment explanation
Indices: 85140730--85140767 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
85140720 TGTTTATATA
*
85140730 TATTATAGATTTAATATTT
1 TATTATAGAATTAATATTT
*
85140749 TATT-TAGAATTAGTATTT
1 TATTATAGAATTAATATTT
85140767 T
1 T
85140768 TATAATGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (19 bp):
TATTATAGAATTAATATTT
Found at i:85142710 original size:24 final size:24
Alignment explanation
Indices: 85142683--85142733 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
85142673 AAAAAATATC
*
85142683 AAAA-TTAAAATATATTTTAATAAT
1 AAAAGTTAAAACATATTTTAA-AAT
*
85142707 AAAAGTTAAAACATTTTTTAAAAT
1 AAAAGTTAAAACATATTTTAAAAT
85142731 AAA
1 AAA
85142734 TCAATTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (24 bp):
AAAAGTTAAAACATATTTTAAAAT
Found at i:85144551 original size:17 final size:18
Alignment explanation
Indices: 85144529--85144564 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
85144519 AATCTAGGCG
85144529 TATGGG-CCACACGGGCA
1 TATGGGCCCACACGGGCA
85144546 TATGGGCCCACACGGGCA
1 TATGGGCCCACACGGGCA
85144564 T
1 T
85144565 GGGGGCCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.22, C:0.31, G:0.33, T:0.14
Consensus pattern (18 bp):
TATGGGCCCACACGGGCA
Found at i:85144570 original size:18 final size:18
Alignment explanation
Indices: 85144535--85144573 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
85144525 GGCGTATGGG
*
85144535 CCACACGGGCATATGGGC
1 CCACACGGGCATAGGGGC
*
85144553 CCACACGGGCATGGGGGC
1 CCACACGGGCATAGGGGC
85144571 CCA
1 CCA
85144574 TAATTCTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.36, G:0.36, T:0.08
Consensus pattern (18 bp):
CCACACGGGCATAGGGGC
Found at i:85153213 original size:37 final size:37
Alignment explanation
Indices: 85153172--85153246 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
85153162 TGTTAATTTC
* *
85153172 AAGACTTATGTAATGTTTTTAATTATGTAGTGGTTCA
1 AAGACTTATGTAATGTTTCTAATTATGTAGTGATTCA
*
85153209 AAGACTTATGTAATGTTTCTAATTATTTAGTGATTCA
1 AAGACTTATGTAATGTTTCTAATTATGTAGTGATTCA
85153246 A
1 A
85153247 TATCTAATCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTCTAATTATGTAGTGATTCA
Found at i:85160019 original size:187 final size:186
Alignment explanation
Indices: 85159680--85160027 Score: 534
Period size: 187 Copynumber: 1.9 Consensus size: 186
85159670 GGCGTGTGAT
*
85159680 CCACACGGCCTAGACACACGGGCGTGTCAAAGGCCGTGCGAAAATTGGAGCTAAATTTTCAAATT
1 CCACACGGCCTAGACACACGGGCGTGTCAAAGGCCGTGCAAAAATTGGAGCTAAATTTTCAAATT
* ** *
85159745 TTAAATAAGTCAGAGAGCTCCACGGGCAAGGCACACGATCGTGTGTTCAGACACGTGGGCGTGTG
66 TTAAATAAGTCAGAGAGCTCCACGGGCAAGGCACACGACCGTGTGTTCAGACACACGGGCGTGTA
** * *
85159810 GGAGACCACACGGGCTTGGGAGAAGTGAACACGGCCGTCCGATATGGGCTTGTAAC
131 GGAGACCACACGAACATGGGAGAAGCGAACACGGCCGTCCGATATGGGCTTGTAAC
* * *
85159866 CCACACGGCCTAGACATACGGGCGTGTCAAATGGCTGTGTAAAAATTGGAGCTAAATTTTCAAAT
1 CCACACGGCCTAGACACACGGGCGTGTCAAA-GGCCGTGCAAAAATTGGAGCTAAATTTTCAAAT
* * * *
85159931 TTTAAATAAGTTAGAGAGCTCCACGGGCAAGGCACATGGCCGTGTGTTCGGACACACGGGCGTGT
65 TTTAAATAAGTCAGAGAGCTCCACGGGCAAGGCACACGACCGTGTGTTCAGACACACGGGCGTGT
*
85159996 AGGAGACCACATGAACATGGGAGAAGCGAACA
130 AGGAGACCACACGAACATGGGAGAAGCGAACA
85160028 ACGTAGGACA
Statistics
Matches: 144, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
186 30 0.21
187 114 0.79
ACGTcount: A:0.29, C:0.22, G:0.30, T:0.19
Consensus pattern (186 bp):
CCACACGGCCTAGACACACGGGCGTGTCAAAGGCCGTGCAAAAATTGGAGCTAAATTTTCAAATT
TTAAATAAGTCAGAGAGCTCCACGGGCAAGGCACACGACCGTGTGTTCAGACACACGGGCGTGTA
GGAGACCACACGAACATGGGAGAAGCGAACACGGCCGTCCGATATGGGCTTGTAAC
Found at i:85160689 original size:3 final size:3
Alignment explanation
Indices: 85160681--85160713 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
85160671 GATATATTGT
85160681 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
85160714 CTACTTTACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:85162256 original size:6 final size:6
Alignment explanation
Indices: 85162242--85162313 Score: 90
Period size: 6 Copynumber: 11.7 Consensus size: 6
85162232 TTGAGTCCGA
* * * *
85162242 TTATTT TTATGT TTATGT TTATGT TTATGT TTATTT TTATCTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTAT-TT TTATTT
85162291 TTATCTT TTATTT TTATTT TTAT
1 TTAT-TT TTATTT TTATTT TTAT
85162314 GTCTATTTTG
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
6 50 0.81
7 12 0.19
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:85162262 original size:12 final size:12
Alignment explanation
Indices: 85162242--85162322 Score: 90
Period size: 12 Copynumber: 6.6 Consensus size: 12
85162232 TTGAGTCCGA
85162242 TTATTTTTATGT
1 TTATTTTTATGT
*
85162254 TTATGTTTATGT
1 TTATTTTTATGT
* *
85162266 TTATGTTTATTT
1 TTATTTTTATGT
*
85162278 TTATCTTTTATTT
1 TTAT-TTTTATGT
*
85162291 TTATCTTTTATTT
1 TTAT-TTTTATGT
85162304 TTATTTTTATGT
1 TTATTTTTATGT
*
85162316 CTATTTT
1 TTATTTT
85162323 GTTTTCCAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
12 39 0.62
13 24 0.38
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (12 bp):
TTATTTTTATGT
Found at i:85162320 original size:18 final size:18
Alignment explanation
Indices: 85162242--85162322 Score: 90
Period size: 18 Copynumber: 4.4 Consensus size: 18
85162232 TTGAGTCCGA
85162242 TTATTTTTATGTTTATGT
1 TTATTTTTATGTTTATGT
* *
85162260 TTATGTTTATGTTTATTT
1 TTATTTTTATGTTTATGT
* *
85162278 TTATCTTTTATTTTTATCTT
1 TTAT-TTTTATGTTTAT-GT
*
85162298 TTATTTTTATTTTTATGT
1 TTATTTTTATGTTTATGT
*
85162316 CTATTTT
1 TTATTTT
85162323 GTTTTCCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
18 27 0.49
19 22 0.40
20 6 0.11
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTTTATGTTTATGT
Found at i:85172606 original size:21 final size:20
Alignment explanation
Indices: 85172563--85172607 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
85172553 ACTAAACTGA
*
85172563 AAACTTTAGAAATTTTTACT
1 AAACTTTAGAAATTTTCACT
85172583 AAAC-TTAGAAAATTTTCCACT
1 AAACTTTAG-AAATTTT-CACT
85172604 AAAC
1 AAAC
85172608 AGGGGTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 4 0.18
20 11 0.50
21 7 0.32
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (20 bp):
AAACTTTAGAAATTTTCACT
Found at i:85173531 original size:16 final size:16
Alignment explanation
Indices: 85173510--85173541 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
85173500 AACCTTACCA
85173510 CGAGTTTATCACTTAT
1 CGAGTTTATCACTTAT
*
85173526 CGAGTTTATTACTTAT
1 CGAGTTTATCACTTAT
85173542 GAATTTTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (16 bp):
CGAGTTTATCACTTAT
Found at i:85175026 original size:46 final size:46
Alignment explanation
Indices: 85174959--85175129 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
85174949 AACCCGCCCC
* *
85174959 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * * *
85175005 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
85175053 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* *
85175098 TAAGTGAACTCGGACTCAACTCAATGAGTTCG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCG
85175130 AATGCTCAAC
Statistics
Matches: 100, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 56 0.56
47 27 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:85175069 original size:93 final size:93
Alignment explanation
Indices: 85174964--85175134 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
85174954 GCCCCTAAGT
* * *
85174964 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85175029 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGAATGCCTAGTTACATTTCAC
*
85175057 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85175122 TGAGTTCGAATGC
66 CGAGTTCGAATGC
85175135 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:85179632 original size:18 final size:18
Alignment explanation
Indices: 85179609--85179646 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
85179599 ATGGCTTCTA
85179609 ATTATG-TTTTTACAATTT
1 ATTATGATTTTTA-AATTT
85179627 ATTATGAATTTTTAAATTT
1 ATTATG-ATTTTTAAATTT
85179646 A
1 A
85179647 GAAAAGAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 6 0.33
20 6 0.33
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (18 bp):
ATTATGATTTTTAAATTT
Found at i:85180576 original size:46 final size:46
Alignment explanation
Indices: 85180509--85180679 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
85180499 AACCCGCCCC
*
85180509 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* * *
85180555 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
85180603 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
85180648 TAAGTGAACTCGGACTCAACTCAATGAGTTCG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCG
85180680 AATGCTCAAC
Statistics
Matches: 101, Mismatches: 15, Indels: 18
0.75 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 56 0.55
47 27 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:85180622 original size:93 final size:93
Alignment explanation
Indices: 85180514--85180684 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
85180504 GCCCCTAAGT
* *
85180514 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85180579 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGAATGCCTAGTTACATTTCAC
*
85180607 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85180672 TGAGTTCGAATGC
66 CGAGTTCGAATGC
85180685 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:85192245 original size:13 final size:13
Alignment explanation
Indices: 85192227--85192258 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
85192217 CATATACCAA
85192227 ATTCATTCATATG
1 ATTCATTCATATG
85192240 ATTCATTCATATG
1 ATTCATTCATATG
*
85192253 AATCAT
1 ATTCAT
85192259 AACATAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (13 bp):
ATTCATTCATATG
Found at i:85192586 original size:43 final size:43
Alignment explanation
Indices: 85192539--85192643 Score: 115
Period size: 42 Copynumber: 2.4 Consensus size: 43
85192529 ATACGTGGTT
*
85192539 TTACATGTAATCAAATATCGATG-CCACTGTCCCAGACAGGATC
1 TTACACGTAATCAAATATCGATGTCCA-TGTCCCAGACAGGATC
* * * *
85192582 TTACACGAAATCAAATA-AGATGTCGATGTCCCAGACAGGGTC
1 TTACACGTAATCAAATATCGATGTCCATGTCCCAGACAGGATC
* *
85192624 TGACACGTAAATCACATATC
1 TTACACGT-AATCAAATATC
85192644 AGAAATCCTA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.50
43 25 0.50
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (43 bp):
TTACACGTAATCAAATATCGATGTCCATGTCCCAGACAGGATC
Found at i:85200181 original size:43 final size:41
Alignment explanation
Indices: 85200119--85200236 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 41
85200109 AGCTCGTACA
*
85200119 ATGCCAATGTCCCAAACAGGGTCTTACATGTAATTAAATATCG
1 ATGCC-ATGTCCCAGACAGGGTCTTACATGTAATTAAATA-CG
* *
85200162 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATTAAATAGG
1 ATGCCA-TGTCCCAGACAGGGTCTTACATGTAATTAAATACG
* * **
85200204 ATGTCGATGTCCCAGATAATGTCTTACATGTAA
1 ATG-CCATGTCCCAGACAGGGTCTTACATGTAA
85200237 ATCACATATT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
42 27 0.42
43 38 0.58
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (41 bp):
ATGCCATGTCCCAGACAGGGTCTTACATGTAATTAAATACG
Found at i:85201928 original size:14 final size:14
Alignment explanation
Indices: 85201905--85201947 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
85201895 ATGGAGAGAT
85201905 CAAAAGAAAAAGAG
1 CAAAAGAAAAAGAG
*
85201919 CAAAATAAAAAGAATG
1 CAAAAGAAAAAG-A-G
85201935 -AAAAGAAAAAGAG
1 CAAAAGAAAAAGAG
85201948 TGGGAAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 11 0.44
16 1 0.04
ACGTcount: A:0.72, C:0.05, G:0.19, T:0.05
Consensus pattern (14 bp):
CAAAAGAAAAAGAG
Found at i:85204792 original size:13 final size:13
Alignment explanation
Indices: 85204774--85204798 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85204764 TGATGGTATA
85204774 TTGAATCCATGAC
1 TTGAATCCATGAC
85204787 TTGAATCCATGA
1 TTGAATCCATGA
85204799 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:85205381 original size:27 final size:27
Alignment explanation
Indices: 85205346--85205524 Score: 184
Period size: 27 Copynumber: 6.6 Consensus size: 27
85205336 TTAAATTGTA
85205346 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
85205373 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
85205400 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
85205427 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
85205455 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* *
85205482 TAGCACTAAGTGTGCGAGT-TGATTATA
1 TAGCACTAAGTGTGCGA-TATGACTATG
*
85205509 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
85205525 GGCTCAATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:85205462 original size:82 final size:81
Alignment explanation
Indices: 85205348--85205503 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
85205338 AAATTGTATA
* *
85205348 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85205412 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
85205429 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
85205494 TGCGAGTTGA
65 TGCGAATTGA
85205504 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85205515 original size:82 final size:81
Alignment explanation
Indices: 85205344--85205524 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
85205334 GATTAAATTG
* *
85205344 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85205409 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
85205425 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85205489 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
85205507 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
85205525 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85211977 original size:20 final size:20
Alignment explanation
Indices: 85211952--85211990 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
85211942 TAATATTGGT
*
85211952 AAGTG-ATTAGAAAATAAAAG
1 AAGTGAATTA-AAAAGAAAAG
85211972 AAGTGAATTAAAAAGAAAA
1 AAGTGAATTAAAAAGAAAA
85211991 AAAGGATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (20 bp):
AAGTGAATTAAAAAGAAAAG
Found at i:85212761 original size:13 final size:13
Alignment explanation
Indices: 85212743--85212767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85212733 TAATGGTATA
85212743 TTGAATCCATGAC
1 TTGAATCCATGAC
85212756 TTGAATCCATGA
1 TTGAATCCATGA
85212768 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:85213342 original size:27 final size:27
Alignment explanation
Indices: 85213308--85213485 Score: 182
Period size: 27 Copynumber: 6.6 Consensus size: 27
85213298 TAAATTGTAC
85213308 AGCACTAAGTGTGCGATATGACTATGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
85213335 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATATGACTATGT
* *
85213361 ATGCACTAAGTGTGCGA-ATTGACCATGC
1 A-GCACTAAGTGTGCGATA-TGACTATGT
* *
85213389 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TATGACTATGT
* * *
85213417 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATATGACTATGT
* *
85213444 AGCACTAAGTGTGCGAGT-TGATTATAT
1 AGCACTAAGTGTGCGA-TATGACTATGT
*
85213471 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85213486 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 105 0.81
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATATGACTATGT
Found at i:85213423 original size:82 final size:81
Alignment explanation
Indices: 85213309--85213464 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
85213299 AAATTGTACA
* *
85213309 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85213373 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
85213390 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
85213455 TGCGAGTTGA
65 TGCGAATTGA
85213465 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85213476 original size:82 final size:81
Alignment explanation
Indices: 85213305--85213485 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
85213295 GATTAAATTG
* *
85213305 TACAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85213370 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
85213386 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85213450 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85213468 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85213486 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85213496 original size:27 final size:27
Alignment explanation
Indices: 85213390--85213496 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
85213380 TGACCATGCG
* * * *
85213390 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
85213418 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
85213445 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
85213472 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
85213497 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:85217221 original size:44 final size:44
Alignment explanation
Indices: 85217128--85217223 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
85217118 TGCCATTTTT
* * ** *
85217128 GGCTTGCACCCTCTCGAGCTTGCATTTAGACCGTCTGCCTCTTA
1 GGCTTGTACCCACTCGAGCTTGCATTTAGACCGTCCACCACTTA
* *
85217172 GGCTTGTACCCACTCGGGCTTGCATTTAGACTGTCCACCACTTCA
1 GGCTTGTACCCACTCGAGCTTGCATTTAGACCGTCCACCACTT-A
85217217 -GCTTGTA
1 GGCTTGTA
85217224 ATTCGACAGG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 43 0.98
45 1 0.02
ACGTcount: A:0.16, C:0.32, G:0.21, T:0.31
Consensus pattern (44 bp):
GGCTTGTACCCACTCGAGCTTGCATTTAGACCGTCCACCACTTA
Found at i:85220524 original size:11 final size:12
Alignment explanation
Indices: 85220497--85220524 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
85220487 TTAATTCAAC
85220497 AAAAAATTATTT
1 AAAAAATTATTT
85220509 AAAAAATTATTT
1 AAAAAATTATTT
85220521 AAAA
1 AAAA
85220525 TTCATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAAAATTATTT
Found at i:85223470 original size:13 final size:13
Alignment explanation
Indices: 85223452--85223515 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
85223442 AGTTTGGCAA
85223452 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
85223465 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
85223478 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* * *
85223491 TGCTTTTTAGAGG
1 TGCTTTTGAAAAG
85223504 TGCTTTTGAAAA
1 TGCTTTTGAAAA
85223516 TTTTGGTTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.28, C:0.08, G:0.27, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:85224640 original size:22 final size:22
Alignment explanation
Indices: 85224596--85224641 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
85224586 TATTTTTATT
85224596 TAAATTTAATTATTAAAATATA
1 TAAATTTAATTATTAAAATATA
85224618 TAAATATTAA-TA-TAAAATAATA
1 TAAAT-TTAATTATTAAAAT-ATA
85224640 TA
1 TA
85224642 TTTTAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.27
22 12 0.55
23 4 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAATTTAATTATTAAAATATA
Found at i:85228817 original size:85 final size:88
Alignment explanation
Indices: 85228720--85228900 Score: 219
Period size: 90 Copynumber: 2.1 Consensus size: 88
85228710 TTTTTAACTT
* * * *
85228720 GTACTTAAACTTTTAGAATGTATGAAAA-AGA-CTTAAGCTTTCT-AGAAAAAA-AATTAAGCTC
1 GTACTTAAACTTTAAAAATGTAT-AAAAGAGACCTTAAACTTTCTCA-AAAAAACAATTAAGCCC
* *
85228781 GT-GTTTTTTTTTACACACAATTGA
64 CTAATTTTTTTTTACACACAATTGA
*
85228805 GTACTTAAACTTTAAAAATGTATAAAAGAGACCCTTAAACTTTTTCAAAAAAACAATTAAGCCCC
1 GTACTTAAACTTTAAAAATGTATAAAAGAGA-CCTTAAACTTTCTCAAAAAAACAATTAAGCCCC
*
85228870 TACATTTTTTTTTACACTCAATTGA
65 TA-ATTTTTTTTTACACACAATTGA
85228895 GTACTT
1 GTACTT
85228901 GAACCACCCC
Statistics
Matches: 81, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
84 4 0.05
85 24 0.30
87 16 0.20
88 11 0.14
90 26 0.32
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (88 bp):
GTACTTAAACTTTAAAAATGTATAAAAGAGACCTTAAACTTTCTCAAAAAAACAATTAAGCCCCT
AATTTTTTTTTACACACAATTGA
Found at i:85228998 original size:9 final size:9
Alignment explanation
Indices: 85228986--85229119 Score: 71
Period size: 9 Copynumber: 14.7 Consensus size: 9
85228976 AAAAAAATCA
85228986 ATAAAAATT
1 ATAAAAATT
*
85228995 AT-AAAATA
1 ATAAAAATT
* *
85229003 ATTAAATTT
1 ATAAAAATT
85229012 AATAAAAA-T
1 -ATAAAAATT
*
85229021 ATTAAAATT
1 ATAAAAATT
*
85229030 AGAAAAATT
1 ATAAAAATT
85229039 AT-AAAATT
1 ATAAAAATT
*
85229047 CGTTAAAAATT
1 --ATAAAAATT
* *
85229058 GTAAAATTTT
1 ATAAAA-ATT
*
85229068 ATAAAAATC
1 ATAAAAATT
*
85229077 GTAAAAATT
1 ATAAAAATT
85229086 AT-AAAATAT
1 ATAAAAAT-T
*
85229095 ATAGAAA-T
1 ATAAAAATT
85229103 ATAGAAAATTT
1 ATA-AAAA-TT
85229114 ATAAAA
1 ATAAAA
85229120 TTTTATAAAG
Statistics
Matches: 93, Mismatches: 20, Indels: 23
0.68 0.15 0.17
Matches are distributed among these distances:
8 28 0.30
9 36 0.39
10 19 0.20
11 10 0.11
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:85229028 original size:19 final size:18
Alignment explanation
Indices: 85228986--85229128 Score: 80
Period size: 19 Copynumber: 7.8 Consensus size: 18
85228976 AAAAAAATCA
* *
85228986 ATAAAAATTAT-AAAATA
1 ATAAAATTTATAAAAATT
*
85229003 ATTAAATTTAATAAAAA-T
1 ATAAAATTT-ATAAAAATT
*
85229021 ATTAAAA-TTAGAAAAATT
1 A-TAAAATTTATAAAAATT
85229039 ATAAAATTCGT-TAAAAATT
1 ATAAAATT--TATAAAAATT
* *
85229058 GTAAAATTTTATAAAAATC
1 ATAAAA-TTTATAAAAATT
* *
85229077 GTAAAAATTAT-AAAATAT
1 ATAAAATTTATAAAAAT-T
* * *
85229095 ATAGAAATATAGAAAATTT
1 ATA-AAATTTATAAAAATT
85229114 ATAAAATTTTATAAA
1 ATAAAA-TTTATAAA
85229129 GTCGTAAGAA
Statistics
Matches: 96, Mismatches: 17, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
17 23 0.24
18 18 0.19
19 48 0.50
20 7 0.07
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (18 bp):
ATAAAATTTATAAAAATT
Found at i:85229055 original size:28 final size:28
Alignment explanation
Indices: 85229024--85229128 Score: 83
Period size: 28 Copynumber: 3.8 Consensus size: 28
85229014 TAAAAATATT
*
85229024 AAAATTAGAAAA-ATTATAAAATTCGTTA
1 AAAATTAGAAAATATTATAAAAATCG-TA
*
85229052 AAAATT-GTAAAATTTTATAAAAATCGTA
1 AAAATTAG-AAAATATTATAAAAATCGTA
* *
85229080 AAAATTATAAAATA-TATAGAAATATAG-A
1 AAAATTAGAAAATATTATA-AAA-ATCGTA
* * *
85229108 AAATTTATAAAATTTTATAAA
1 AAAATTAGAAAATATTATAAA
85229129 GTCGTAAGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
27 5 0.08
28 41 0.64
29 18 0.28
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (28 bp):
AAAATTAGAAAATATTATAAAAATCGTA
Found at i:85229395 original size:18 final size:18
Alignment explanation
Indices: 85229374--85229436 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
85229364 TTTTGATACA
*
85229374 TTTTATATTTTTTATGAT
1 TTTTATATTTTTTAAGAT
* * *
85229392 TTTTATAAAATTTATAAAAT
1 TTTTAT--ATTTTTTAAGAT
*
85229412 TTTTATATTTTTTACGAT
1 TTTTATATTTTTTAAGAT
85229430 TTTTATA
1 TTTTATA
85229437 ATTGTAACAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
18 21 0.60
20 14 0.40
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (18 bp):
TTTTATATTTTTTAAGAT
Found at i:85243597 original size:40 final size:40
Alignment explanation
Indices: 85243395--85243583 Score: 297
Period size: 40 Copynumber: 4.7 Consensus size: 40
85243385 ATTCGGATTG
*
85243395 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
85243435 ATAACCGGGCTAAGTCCCGAAGGCCTTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
85243475 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
85243515 ATAACCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
85243555 ATAATCAGTCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
85243584 AGCTAGTAGC
Statistics
Matches: 135, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 135 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:85246927 original size:30 final size:30
Alignment explanation
Indices: 85246893--85246953 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
85246883 AAGTTAATTA
85246893 TAGTTAATGTCTTCAATTGAGATATTTTGG
1 TAGTTAATGTCTTCAATTGAGATATTTTGG
85246923 TAGTTAATGTCTTCAATTGAGATATTTTGG
1 TAGTTAATGTCTTCAATTGAGATATTTTGG
85246953 T
1 T
85246954 TACTTGAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.48
Consensus pattern (30 bp):
TAGTTAATGTCTTCAATTGAGATATTTTGG
Found at i:85248151 original size:6 final size:6
Alignment explanation
Indices: 85248121--85248214 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
85248111 AAGAAACATT
* * *
85248121 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
85248170 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ACCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
85248215 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:85248179 original size:31 final size:31
Alignment explanation
Indices: 85248142--85248214 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
85248132 AATCAAAATG
* *
85248142 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAACC
*
85248173 AGAATCAGAATCAGTATCAGGTAACAGAACC
1 AGAATCAGAATCAGAATCAGGTAACAGAACC
*
85248204 AAAATCAGAAT
1 AGAATCAGAAT
85248215 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAACC
Found at i:85248381 original size:27 final size:26
Alignment explanation
Indices: 85248333--85248392 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
85248323 GCGAGGCTGC
*
85248333 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
85248360 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
85248386 CAAATAT
1 CAGATAT
85248393 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:85248777 original size:54 final size:54
Alignment explanation
Indices: 85248718--85248902 Score: 253
Period size: 54 Copynumber: 3.4 Consensus size: 54
85248708 AACACGCTAG
** * *
85248718 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTTTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
* * **
85248772 GGGTAAAACAATAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
* * * *
85248826 GGGTAAAATAGTAATTCTGTCAATCGAGGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
*
85248880 GGGTAAAACAGTAATTTGGTAAA
1 GGGTAAAACAGTAATTTTGTAAA
85248903 CTAAAGTATT
Statistics
Matches: 111, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 111 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
Found at i:85248830 original size:81 final size:81
Alignment explanation
Indices: 85248718--85248895 Score: 257
Period size: 81 Copynumber: 2.2 Consensus size: 81
85248708 AACACGCTAG
* * * *
85248718 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTTTAAATCGAGGGTAAAACAA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAA
* *
85248783 TAATTTTGTAAATCAA
66 TAATTCTATAAATCAA
* * *
85248799 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTCAATCGAGGGTAAAACGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAA
*
85248864 TAATTCTATAAATCGA
66 TAATTCTATAAATCAA
*
85248880 GGGTAAAACAGTAATT
1 GGGTAAAATAGTAATT
85248896 TGGTAAACTA
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.29
Consensus pattern (81 bp):
GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAA
TAATTCTATAAATCAA
Found at i:85248902 original size:27 final size:27
Alignment explanation
Indices: 85248718--85248895 Score: 223
Period size: 27 Copynumber: 6.6 Consensus size: 27
85248708 AACACGCTAG
** *
85248718 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
85248745 GGGTAAAACGGTAATTCTTTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* * * *
85248772 GGGTAAAACAATAATTTTGTAAATCAA
1 GGGTAAAACAGTAATTCTATAAATCGA
*
85248799 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* * *
85248826 GGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
85248853 GGGTAAAAC-GATAATTCTATAAATCGA
1 GGGTAAAACAG-TAATTCTATAAATCGA
85248880 GGGTAAAACAGTAATT
1 GGGTAAAACAGTAATT
85248896 TGGTAAACTA
Statistics
Matches: 131, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 129 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.29
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTATAAATCGA
Found at i:85251469 original size:27 final size:27
Alignment explanation
Indices: 85251436--85251489 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
85251426 TGTCATGTGA
* *
85251436 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
85251463 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
85251490 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:85252951 original size:219 final size:220
Alignment explanation
Indices: 85252572--85253009 Score: 666
Period size: 219 Copynumber: 2.0 Consensus size: 220
85252562 GGCGTGCGCA
* *
85252572 ATTTTGTGTGTTTTTTTTTATATGCAGATCGCGGCTAGATAAGGGGTAAGATGGGTTGCGAGTAT
1 ATTTTGTGTGTTTTTTTTAATATGCAGATCGCGGCTAGATAAGGGGTAAGATGAGTTGCGAGTAT
**
85252637 AAATTAAGTCAAAAAGAGCTTATGGCACAGTGGCAGCAGCGCGTTAAAGGGACTGAGAGGGCACG
66 AAATTAACACAAAAAGAGCTTATGGCACAGTGGCAGCAGCGCGTTAAAGGGACTGAGAGGGCACG
*
85252702 AGTTCTAATCCAGGTGCTGGCGTTATTTTGGTTTG-TTAAAGGCGGACCAAGACTTCAGCAGGCG
131 AGTTCTAATCCAGGTGCTGGCGTTATTTTGGTTTGTTTAAAGGCGGACCAAGACTTCAGCAGGCA
** *
85252766 AGGTTTATAATTAACTGTGACCGTT
196 AGGTTTATAAAAAACTGTAACCGTT
* *
85252791 ATTTTGTGTGTTTTTTTTAATATGCAGATCGCGGCTTGATAAGGGTTAAGATGAGTTGCGAGTAT
1 ATTTTGTGTGTTTTTTTTAATATGCAGATCGCGGCTAGATAAGGGGTAAGATGAGTTGCGAGTAT
* * *
85252856 -AGTTCAACACAAAAAGAGCTTATGGCACAGTGGCAGCAGTGCGTTAAAGGGACTGGGAGGGCAC
66 AAATT-AACACAAAAAGAGCTTATGGCACAGTGGCAGCAGCGCGTTAAAGGGACTGAGAGGGCAC
* ** * *
85252920 GAGTT-TGAATCCCGGTGCTGGCGTTATTTTGGTTTGTTTTTAGGCGGACCAAGACTTTAGCATG
130 GAGTTCT-AATCCAGGTGCTGGCGTTATTTTGGTTTGTTTAAAGGCGGACCAAGACTTCAGCAGG
*
85252984 TAAGGTTTATAAAAAACTGTAACCGT
194 CAAGGTTTATAAAAAACTGTAACCGT
85253010 ATACGTAAAG
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
218 4 0.02
219 149 0.76
220 44 0.22
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (220 bp):
ATTTTGTGTGTTTTTTTTAATATGCAGATCGCGGCTAGATAAGGGGTAAGATGAGTTGCGAGTAT
AAATTAACACAAAAAGAGCTTATGGCACAGTGGCAGCAGCGCGTTAAAGGGACTGAGAGGGCACG
AGTTCTAATCCAGGTGCTGGCGTTATTTTGGTTTGTTTAAAGGCGGACCAAGACTTCAGCAGGCA
AGGTTTATAAAAAACTGTAACCGTT
Found at i:85254905 original size:20 final size:20
Alignment explanation
Indices: 85254875--85254919 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
85254865 CTGTTTTATT
85254875 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
85254894 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
85254914 ATGGGC
1 ATGGGC
85254920 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:85254987 original size:27 final size:28
Alignment explanation
Indices: 85254948--85255050 Score: 75
Period size: 28 Copynumber: 3.5 Consensus size: 28
85254938 ACTTGTAATA
85254948 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTACGGCCCAGACTGATACTGATAT
*
85254976 GGGCTA-GGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTACGGCCCAG-A----CTGATACTGAT-AT
* * * *
85255008 AGGGCTATGTCCCAGATTAATACTGATAT
1 -GGGCTACGGCCCAGACTGATACTGATAT
*
85255037 GGGCTAAGGCCCAG
1 GGGCTACGGCCCAG
85255051 TTAACACTGA
Statistics
Matches: 59, Mismatches: 7, Indels: 18
0.70 0.08 0.21
Matches are distributed among these distances:
27 7 0.12
28 19 0.32
29 8 0.14
30 1 0.02
31 1 0.02
32 10 0.17
33 7 0.12
34 6 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (28 bp):
GGGCTACGGCCCAGACTGATACTGATAT
Found at i:85255075 original size:62 final size:61
Alignment explanation
Indices: 85254940--85255075 Score: 168
Period size: 61 Copynumber: 2.2 Consensus size: 61
85254930 ATATCTCGAC
* * *
85254940 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* * *
85255001 TTGTAATAGGGCTATGTCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
85255062 TTCTGAATAGGGCT
1 TTGT-AATAGGGCT
85255076 TAGGCCCTGT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
61 41 0.63
62 24 0.37
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:85260541 original size:20 final size:20
Alignment explanation
Indices: 85260511--85260555 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
85260501 CTGTTTTATT
85260511 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
85260530 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
85260550 ATGGGC
1 ATGGGC
85260556 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:85260685 original size:28 final size:28
Alignment explanation
Indices: 85260584--85260690 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 28
85260574 ACTTGTAATA
* * *
85260584 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
85260612 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
85260644 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
85260673 GGGCTAAGGCCCAG-TTAA
1 GGGCTAAGGCCCAGATTAA
85260691 CACTAATTTC
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
27 11 0.17
28 19 0.30
29 8 0.13
30 2 0.03
31 1 0.02
32 9 0.14
33 6 0.10
34 7 0.11
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:85260720 original size:62 final size:61
Alignment explanation
Indices: 85260576--85260720 Score: 152
Period size: 61 Copynumber: 2.4 Consensus size: 61
85260566 ATATCTCGAC
* * * * * *
85260576 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATACGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTAATA
* *
85260637 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTAAT-
1 TTGTAATACGGCTATGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTAATA
*
85260698 TTCTGAATACGGCT-TAGGCCCAG
1 TTGT-AATACGGCTAT-GGCCCAG
85260721 TAAAGTTTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
61 43 0.60
62 29 0.40
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (61 bp):
TTGTAATACGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTAATA
Found at i:85263288 original size:43 final size:43
Alignment explanation
Indices: 85263227--85263347 Score: 188
Period size: 43 Copynumber: 2.8 Consensus size: 43
85263217 GGTGTTACAA
* * *
85263227 CCAATGTCCCAGACATGGTCTTCCACGTAATCACAATAAAATG
1 CCAATGTCCCATACATGGTCTTACATGTAATCACAATAAAATG
* *
85263270 CCAATGTTCCATACATGGTCTTACATGTAATCACAATACAATG
1 CCAATGTCCCATACATGGTCTTACATGTAATCACAATAAAATG
*
85263313 CCAATGTCCCATATATGGTCTTACATGTAATCACA
1 CCAATGTCCCATACATGGTCTTACATGTAATCACA
85263348 TCTCGGTAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (43 bp):
CCAATGTCCCATACATGGTCTTACATGTAATCACAATAAAATG
Found at i:85264680 original size:21 final size:20
Alignment explanation
Indices: 85264651--85264696 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
85264641 CAAAATGCAA
*
85264651 TCAACCTAACACGAATTAAAT
1 TCAACCTAA-ACAAATTAAAT
*
85264672 TCAAGCTAAACAAATTAAAT
1 TCAACCTAAACAAATTAAAT
85264692 T-AACC
1 TCAACC
85264697 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 3 0.14
20 11 0.50
21 8 0.36
ACGTcount: A:0.50, C:0.22, G:0.04, T:0.24
Consensus pattern (20 bp):
TCAACCTAAACAAATTAAAT
Found at i:85268471 original size:25 final size:24
Alignment explanation
Indices: 85268417--85268472 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 24
85268407 TTAATTAATA
85268417 TAAAATATTAATAATTCAATAAAT
1 TAAAATATTAATAATTCAATAAAT
*
85268441 TGAAAA-ATTAAATAATTGAATAAAAT
1 T-AAAATATT-AATAATTCAAT-AAAT
85268467 TAAAAT
1 TAAAAT
85268473 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.34
Consensus pattern (24 bp):
TAAAATATTAATAATTCAATAAAT
Found at i:85269142 original size:21 final size:21
Alignment explanation
Indices: 85269117--85269159 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
85269107 TATGAGGTCA
*
85269117 TAAAATTATTTTAATATTATT
1 TAAAATTATTTTAAAATTATT
85269138 TAAAATTATTTTAAAATTATT
1 TAAAATTATTTTAAAATTATT
85269159 T
1 T
85269160 TTCGTGTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TAAAATTATTTTAAAATTATT
Found at i:85269145 original size:10 final size:11
Alignment explanation
Indices: 85269117--85269160 Score: 72
Period size: 11 Copynumber: 4.1 Consensus size: 11
85269107 TATGAGGTCA
85269117 TAAAATTATTT
1 TAAAATTATTT
*
85269128 TAATATTA-TT
1 TAAAATTATTT
85269138 TAAAATTATTT
1 TAAAATTATTT
85269149 TAAAATTATTT
1 TAAAATTATTT
85269160 T
1 T
85269161 TCGTGTTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 9 0.30
11 21 0.70
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TAAAATTATTT
Found at i:85284275 original size:49 final size:48
Alignment explanation
Indices: 85284202--85284445 Score: 247
Period size: 49 Copynumber: 4.9 Consensus size: 48
85284192 AGCCGAAGCT
* * *
85284202 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAC
* *
85284250 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGTCCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG-AC-CAAC
** * * *
85284301 ATCTAATATACGTAGTAGCCTGCACTTAGTACTACACACGAGATC-AC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAC
* * * * * * *
85284348 AGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTAGACATGCGACCAATT
1 A----TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA-C
*
85284401 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
85284446 TCACAATAGT
Statistics
Matches: 158, Mismatches: 29, Indels: 17
0.77 0.14 0.08
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
49 76 0.48
50 38 0.24
51 38 0.24
52 1 0.01
53 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAC
Found at i:85288673 original size:41 final size:41
Alignment explanation
Indices: 85288627--85288744 Score: 114
Period size: 41 Copynumber: 2.8 Consensus size: 41
85288617 TTTCGATGTG
*
85288627 TGATTCATGTAAGACCATATTTGGGACATTGGCATC-ACT-TA
1 TGATTCATGTAAGACCATATCTGGGACA-TGGCATCGA-TATA
* * * *
85288668 TGATTCGTGTAAGACCCTGTCTGGGACAGGGGCATCGATATA
1 TGATTCATGTAAGACCATATCTGGGACA-TGGCATCGATATA
* * *
85288710 TGATAGCATGTAAGACCTTATCTGGGATATGGCAT
1 TGAT-TCATGTAAGACCATATCTGGGACATGGCAT
85288745 TTTATGATCT
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
41 31 0.50
42 12 0.19
43 19 0.31
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (41 bp):
TGATTCATGTAAGACCATATCTGGGACATGGCATCGATATA
Found at i:85294352 original size:22 final size:19
Alignment explanation
Indices: 85294313--85294354 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
85294303 TGTAAAGTTG
85294313 ATAATAGTTAATATATATT
1 ATAATAGTTAATATATATT
85294332 ATAATAGATATAATTATATATT
1 ATAATAG-T-TAA-TATATATT
85294354 A
1 A
85294355 ATAACTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 1 0.05
21 3 0.15
22 9 0.45
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
ATAATAGTTAATATATATT
Found at i:85297761 original size:40 final size:40
Alignment explanation
Indices: 85297730--85297905 Score: 239
Period size: 40 Copynumber: 4.4 Consensus size: 40
85297720 GGACTAAGAT
85297730 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
85297770 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
* *
85297810 CCGAAGGCCTTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
* * ** * *
85297850 CCGAAGGCATTCGTGCGAGTTGTTAAA-TCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCC
85297890 CCGAAGGCATTGTGTG
1 CCGAAGGCATT-TGTG
85297906 AGTTACTAAA
Statistics
Matches: 124, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
40 118 0.95
41 6 0.05
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
Found at i:85305697 original size:40 final size:40
Alignment explanation
Indices: 85305497--85305761 Score: 256
Period size: 40 Copynumber: 6.7 Consensus size: 40
85305487 TTGAATGCTG
* * * *
85305497 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
85305537 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
85305576 TTCCGGGTTAAG-CTCCGAAGGCATTTGTGCGAGATAC-AAA
1 -TCCGGGTTAAGTC-CCGAAGGCATTTGTGCGAGATACTAAA
* *
85305616 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * **
85305657 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
85305697 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
85305736 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
85305762 AACTAGGAGC
Statistics
Matches: 196, Mismatches: 20, Indels: 18
0.84 0.09 0.08
Matches are distributed among these distances:
39 36 0.18
40 145 0.74
41 14 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:85314488 original size:20 final size:18
Alignment explanation
Indices: 85314450--85314488 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
85314440 ATGTTTTGTA
*
85314450 TTGAGATTTTTGATAAAT
1 TTGAGATTTTGGATAAAT
85314468 TTGAGTATTTTGGACTAAAT
1 TTGAG-ATTTTGGA-TAAAT
85314488 T
1 T
85314489 GTGAAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.49
Consensus pattern (18 bp):
TTGAGATTTTGGATAAAT
Found at i:85315170 original size:43 final size:42
Alignment explanation
Indices: 85315011--85315174 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 42
85315001 ATAGGATTTC
* * * *
85315011 CGATATGTAATTTCGTGTAAGACCACGTCTGGAACATTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACA-TGACAT
* * * *
85315054 CGATTTGAGATTTACGTGTAAGACCATG-CATGGGATATCGACAT
1 CGATATGTGA-TTACGTGTAAGACCACGTC-TGGGACAT-GACAT
* *
85315098 CG-TATTTGATTCCGTGTAAGACC-CTGTCTGGGACAGTGACAT
1 CGATATGTGATTACGTGTAAGACCAC-GTCTGGGACA-TGACAT
* *
85315140 CGATATGTGAATACATGTAAGACCACGTCTGGGAC
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGAC
85315175 GTTGGCATTG
Statistics
Matches: 95, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 27 0.28
43 41 0.43
44 27 0.28
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
CGATATGTGATTACGTGTAAGACCACGTCTGGGACATGACAT
Found at i:85315490 original size:30 final size:30
Alignment explanation
Indices: 85315454--85315513 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
85315444 TTTCCATGAA
*
85315454 CTACATGTATGAAATGGTTTAGAAATGTGT
1 CTACATGAATGAAATGGTTTAGAAATGTGT
85315484 CTACATGAATGAAATGGTTTAGAAATGTGT
1 CTACATGAATGAAATGGTTTAGAAATGTGT
85315514 TATGTGATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (30 bp):
CTACATGAATGAAATGGTTTAGAAATGTGT
Found at i:85317575 original size:24 final size:24
Alignment explanation
Indices: 85317535--85317629 Score: 104
Period size: 24 Copynumber: 3.8 Consensus size: 24
85317525 AGCTCCTTCT
85317535 GAGCTGATGAACAGTAAGCTCT-ATC
1 GAGCTGA-GAACAGTAAGCTCTGA-C
85317560 GAGCTG-GAAACAGTAAGCTCTGAC
1 GAGCTGAG-AACAGTAAGCTCTGAC
*
85317584 GAGCTGAGAACAGTAAGCTCTTAC
1 GAGCTGAGAACAGTAAGCTCTGAC
* *
85317608 AAGCTGATATATCAGTAAGCTC
1 GAGCTGAGA-A-CAGTAAGCTC
85317630 ATACGAGTTG
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.02
24 42 0.68
25 9 0.15
26 10 0.16
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (24 bp):
GAGCTGAGAACAGTAAGCTCTGAC
Found at i:85322269 original size:43 final size:43
Alignment explanation
Indices: 85322177--85322270 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
85322167 TCTTACATGA
* * *
85322177 AATCAAATAACGATGCCAATGTCCCAGACATGATCTTACCCAT
1 AATCACATAACGATGCCAATGTCCCAGACATGATCTGACACAT
* * *
85322220 AATCACATAATGATGCCAATGTTCCAGACATGGTCTGACACAT
1 AATCACATAACGATGCCAATGTCCCAGACATGATCTGACACAT
*
85322263 ATTCACAT
1 AATCACAT
85322271 CTCGTTAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.26
Consensus pattern (43 bp):
AATCACATAACGATGCCAATGTCCCAGACATGATCTGACACAT
Found at i:85339090 original size:17 final size:18
Alignment explanation
Indices: 85339055--85339090 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
85339045 CCCAAAATCT
*
85339055 ACATGCCCGTGTAGGCCC
1 ACATGCCCGTATAGGCCC
85339073 ACATGCCCGTAT-GGCCC
1 ACATGCCCGTATAGGCCC
85339090 A
1 A
85339091 TAAGCCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.19, C:0.39, G:0.25, T:0.17
Consensus pattern (18 bp):
ACATGCCCGTATAGGCCC
Found at i:85343239 original size:47 final size:47
Alignment explanation
Indices: 85343116--85343242 Score: 184
Period size: 47 Copynumber: 2.7 Consensus size: 47
85343106 ATAATCGATT
* *
85343116 AGTACCTATACCATGGCCCATAGCCAAATAAAGGTAATTTATCTCAG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTCAG
* *
85343163 AGTACCTATACCATGGCCCATATCCAAATCAAGGTAACTTATC-CTGG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTC-AG
* *
85343210 AGTACCTATAGCATGGCCCGTAGCCAAATCAAG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAG
85343243 CTATCTCCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 71 0.99
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTCAG
Found at i:85350609 original size:40 final size:40
Alignment explanation
Indices: 85350499--85350616 Score: 168
Period size: 40 Copynumber: 3.0 Consensus size: 40
85350489 ACCACAAGCT
* * * *
85350499 CAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCA
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCA
*
85350539 CGAA-TGCCTTTGGGTCTTAGCCCGGATATATCAACTTGCA
1 C-AATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCA
85350579 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAA-TTGC
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGC
85350617 TCATGCACAC
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
39 6 0.09
40 62 0.89
41 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (40 bp):
CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCA
Found at i:85358533 original size:40 final size:40
Alignment explanation
Indices: 85358484--85358588 Score: 158
Period size: 40 Copynumber: 2.6 Consensus size: 40
85358474 ACCACAAGCT
* *
85358484 CAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCA
1 CAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCA
* *
85358524 CGAA-TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCA
1 C-AATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCA
85358564 CAATTGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGG
85358589 TATCAATTGC
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.03
40 55 0.93
41 2 0.03
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.27
Consensus pattern (40 bp):
CAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCA
Found at i:85361992 original size:47 final size:47
Alignment explanation
Indices: 85361916--85362005 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
85361906 ACAATCGATA
* *
85361916 AGTACCCATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTTGG
1 AGTACCCATACCATGGCCCATAGCAAAATCAAGGTAACTTATCTTGG
*
85361963 AGTACCTATACCATGGCCCATAGCAAAATCAAGGTAACTTATC
1 AGTACCCATACCATGGCCCATAGCAAAATCAAGGTAACTTATC
85362006 GTGAAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (47 bp):
AGTACCCATACCATGGCCCATAGCAAAATCAAGGTAACTTATCTTGG
Found at i:85364651 original size:47 final size:47
Alignment explanation
Indices: 85364591--85364775 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
85364581 GATAATTGTG
**
85364591 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
85364638 ATGTGAACATGCATATATGTGATAAGCCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
85364685 ATGTGAGCATGCATATCTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
85364732 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
85364776 AATATATGTA
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 124 1.00
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:85365030 original size:37 final size:37
Alignment explanation
Indices: 85364980--85365129 Score: 255
Period size: 37 Copynumber: 4.1 Consensus size: 37
85364970 GGAAATATAT
85364980 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85365017 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85365054 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
85365091 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
85365128 TC
1 TC
85365130 TGAGCTAAAG
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:85366374 original size:16 final size:17
Alignment explanation
Indices: 85366355--85366391 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
85366345 ACTAAAAGGT
85366355 TAAACATG-TAAAATAA
1 TAAACATGTTAAAATAA
*
85366371 TAAACATGTTAATATAA
1 TAAACATGTTAAAATAA
85366388 TAAA
1 TAAA
85366392 ACATATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (17 bp):
TAAACATGTTAAAATAA
Found at i:85367160 original size:29 final size:32
Alignment explanation
Indices: 85367109--85367167 Score: 81
Period size: 30 Copynumber: 1.9 Consensus size: 32
85367099 AAATATGAAT
85367109 TATATATGCTGAAATGTATAATGTG-ATAACA
1 TATATATGCTGAAATGTATAATGTGTATAACA
85367140 TATATATG-TGAAA-G-ATGAATGTGTATAA
1 TATATATGCTGAAATGTAT-AATGTGTATAA
85367168 GCTCGGAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 2 0.08
29 7 0.27
30 9 0.35
31 8 0.31
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.36
Consensus pattern (32 bp):
TATATATGCTGAAATGTATAATGTGTATAACA
Found at i:85370182 original size:36 final size:36
Alignment explanation
Indices: 85370135--85370206 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
85370125 ATCGAAGGAG
* *
85370135 GCTGATGTGTTTTAAAAACTTCAAAATTCATACCTT
1 GCTGATATGTTTTAAAAACTTCAAAACTCATACCTT
85370171 GCTGATATGTTTTAAAAACTTCAAAACTCATACCTT
1 GCTGATATGTTTTAAAAACTTCAAAACTCATACCTT
85370207 ACTTACCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.38
Consensus pattern (36 bp):
GCTGATATGTTTTAAAAACTTCAAAACTCATACCTT
Found at i:85370542 original size:6 final size:6
Alignment explanation
Indices: 85370533--85370596 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
85370523 GATCTCGATC
* * * ** **
85370533 TCTTTT TCTTTT TCCTTC TCTTTT TGTTTT TCACTT TCTTTT TCAATT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
85370581 TCATTTT TCTTTT TCT
1 TC-TTTT TCTTTT TCT
85370597 CATTCTCTTT
Statistics
Matches: 43, Mismatches: 14, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
6 39 0.91
7 4 0.09
ACGTcount: A:0.06, C:0.20, G:0.02, T:0.72
Consensus pattern (6 bp):
TCTTTT
Found at i:85370554 original size:18 final size:19
Alignment explanation
Indices: 85370531--85370596 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 19
85370521 TCGATCTCGA
85370531 TCTCTTTTTCTTTTTC-CT
1 TCTCTTTTTCTTTTTCACT
*
85370549 TCTCTTTTTGTTTTTCACT
1 TCTCTTTTTCTTTTTCACT
** *
85370568 T-TCTTTTTCAATTTCATT
1 TCTCTTTTTCTTTTTCACT
*
85370586 TTTCTTTTTCT
1 TCTCTTTTTCT
85370597 CATTCTCTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
18 29 0.73
19 11 0.28
ACGTcount: A:0.06, C:0.21, G:0.02, T:0.71
Consensus pattern (19 bp):
TCTCTTTTTCTTTTTCACT
Found at i:85379284 original size:27 final size:27
Alignment explanation
Indices: 85379251--85379760 Score: 510
Period size: 27 Copynumber: 18.9 Consensus size: 27
85379241 AATAATGATT
* *
85379251 GAAATACCCCTATAAGGTAAAATAACC
1 GAAATACCCCCATAAGGTAAAATGACC
*
85379278 AAAATACCCCCAT-AGGATAAAATGACC
1 GAAATACCCCCATAAGG-TAAAATGACC
* *
85379305 AAAACACCCCCAT-AGGATAAAATGACC
1 GAAATACCCCCATAAGG-TAAAATGACC
* * *
85379332 AAAACACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAAGGTAAAATGACC
* *
85379359 GAAATACCCCCATAGGGTAAAATGAAC
1 GAAATACCCCCATAAGGTAAAATGACC
*
85379386 GAAATACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAAGGTAAAATGACC
* * *
85379413 GAAACACCCTCATAGGGTAAAATGACC
1 GAAATACCCCCATAAGGTAAAATGACC
* * * *
85379440 GAAACACCCTCAT-AGGATAAAGTGATC
1 GAAATACCCCCATAAGG-TAAAATGACC
*
85379467 GAAATACCCCCATAAGGTAAAATGATC
1 GAAATACCCCCATAAGGTAAAATGACC
* *
85379494 GAAACACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAAGGTAAAATGACC
* **
85379521 AAAATACCCTTATAAGGTAAAATGACC
1 GAAATACCCCCATAAGGTAAAATGACC
* * *
85379548 GAAACACCCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAAGGTAAAATGACC
* *
85379575 GAAACACCCCCA-AAGGATAAAATGACT
1 GAAATACCCCCATAAGG-TAAAATGACC
85379602 GAAATACCCCCAT-AGGATAAAATGACC
1 GAAATACCCCCATAAGG-TAAAATGACC
* * * *
85379629 AAAATACCCCTATAGGGTAAAATGACT
1 GAAATACCCCCATAAGGTAAAATGACC
* *
85379656 GAAATACCCCTATAAGGTAAAATGATC
1 GAAATACCCCCATAAGGTAAAATGACC
* * *
85379683 GAAATACCTCCATAGGGTAAAATGACT
1 GAAATACCCCCATAAGGTAAAATGACC
* ** * **
85379710 GTAATACCCCTGTAGGGTAAAATGATT
1 GAAATACCCCCATAAGGTAAAATGACC
* **
85379737 GTAATA-CCCTGTAAGGTAAAATGA
1 GAAATACCCCCATAAGGTAAAATGA
85379761 TTGTTTTGCC
Statistics
Matches: 423, Mismatches: 53, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
26 25 0.06
27 391 0.92
28 7 0.02
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (27 bp):
GAAATACCCCCATAAGGTAAAATGACC
Found at i:85379327 original size:54 final size:54
Alignment explanation
Indices: 85379251--85379734 Score: 572
Period size: 54 Copynumber: 9.0 Consensus size: 54
85379241 AATAATGATT
* * * * * *
85379251 GAAATACCCCTATAAGGTAAAATAACCAAAATACCCCCATAGGATAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
* * * *
85379305 AAAACACCCCCATAGGATAAAATGACCAAAACACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
* *
85379359 GAAATACCCCCATAGGGTAAAATGAACGAAATACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
* * * * * *
85379413 GAAACACCCTCATAGGGTAAAATGACCGAAACACCCTCATAGGATAAAGTGATC
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
* *
85379467 GAAATACCCCCATAAGGTAAAATGATCGAAACACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
* ** * *
85379521 AAAATACCCTTATAAGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
* * * * * *
85379575 GAAACACCCCCAAAGGATAAAATGACTGAAATACCCCCATAGGATAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
* * * * * * *
85379629 AAAATACCCCTATAGGGTAAAATGACTGAAATACCCCTATAAGGTAAAATGATC
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
* * * * **
85379683 GAAATACCTCCATAGGGTAAAATGACTGTAATACCCCTGTAGGGTAAAATGA
1 GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGA
85379735 TTGTAATACC
Statistics
Matches: 369, Mismatches: 61, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 369 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.17
Consensus pattern (54 bp):
GAAATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAAAATGACC
Found at i:85379380 original size:81 final size:81
Alignment explanation
Indices: 85379251--85379734 Score: 601
Period size: 81 Copynumber: 6.0 Consensus size: 81
85379241 AATAATGATT
* * * * * * *
85379251 GAAATACCCCTATAAGGTAAAATAACCAAAATACCCCCATAGGATAAAATGACCAAAACACCCCC
1 GAAACACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCC
*
85379316 ATAGGATAAAATGACC
66 ATAGGGTAAAATGACC
* * *
85379332 AAAACACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAACGAAATACCCCC
1 GAAACACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCC
85379397 ATAGGGTAAAATGACC
66 ATAGGGTAAAATGACC
* * * * *
85379413 GAAACACCCTCATAGGGTAAAATGACCGAAACACCCTCATAGGATAAAGTGATCGAAATACCCCC
1 GAAACACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCC
* *
85379478 ATAAGGTAAAATGATC
66 ATAGGGTAAAATGACC
* ** *
85379494 GAAACACCCCCATAGGGTAAAATGACCAAAATACCCTTATAAGG-TAAAATGACCGAAACACCCC
1 GAAACACCCCCATAGGGTAAAATGACCGAAATACCCCCAT-AGGATAAAATGACCGAAATACCCC
*
85379558 CATAGGGTAAAATGACT
65 CATAGGGTAAAATGACC
* * * * *
85379575 GAAACACCCCCAAAGGATAAAATGACTGAAATACCCCCATAGGATAAAATGACCAAAATACCCCT
1 GAAACACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCC
*
85379640 ATAGGGTAAAATGACT
66 ATAGGGTAAAATGACC
* * * * * * * * *
85379656 GAAATACCCCTATAAGGTAAAATGATCGAAATACCTCCATAGGGTAAAATGACTGTAATACCCCT
1 GAAACACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCC
*
85379721 GTAGGGTAAAATGA
66 ATAGGGTAAAATGA
85379735 TTGTAATACC
Statistics
Matches: 349, Mismatches: 52, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
80 3 0.01
81 343 0.98
82 3 0.01
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.17
Consensus pattern (81 bp):
GAAACACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCC
ATAGGGTAAAATGACC
Found at i:85379794 original size:27 final size:27
Alignment explanation
Indices: 85379751--85379886 Score: 164
Period size: 27 Copynumber: 5.0 Consensus size: 27
85379741 TACCCTGTAA
* *
85379751 GGTAAAATGATTGTTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* * *
85379778 GTTAGAATGACAATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* * *
85379805 GGTAAAATGACGATTTTTCCCTTATGA
1 GGTAAAATGACTATTTTGCCCTTATGT
85379832 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
** * *
85379859 GGTAGGATGACTGTTTTGCCCCTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
85379886 G
1 G
85379887 ATGTATGTTT
Statistics
Matches: 92, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGT
Found at i:85380212 original size:18 final size:18
Alignment explanation
Indices: 85380186--85380258 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 18
85380176 GGACTTGCAA
*
85380186 ACTGCTTACTGTTATTGC
1 ACTGCTTACTGTTACTGC
*
85380204 ACTGTTTACTGTTACTGC
1 ACTGCTTACTGTTACTGC
** ** *
85380222 ACTAATTACCATTACTGT
1 ACTGCTTACTGTTACTGC
**
85380240 ACTATTTACTGTTACTGC
1 ACTGCTTACTGTTACTGC
85380258 A
1 A
85380259 ATGGGCCAAG
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.23, C:0.22, G:0.12, T:0.42
Consensus pattern (18 bp):
ACTGCTTACTGTTACTGC
Found at i:85382328 original size:13 final size:13
Alignment explanation
Indices: 85382310--85382334 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85382300 GAATGACGAA
85382310 ATGTTTGGCTATG
1 ATGTTTGGCTATG
85382323 ATGTTTGGCTAT
1 ATGTTTGGCTAT
85382335 CTATGTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.28, T:0.48
Consensus pattern (13 bp):
ATGTTTGGCTATG
Found at i:85382706 original size:7 final size:7
Alignment explanation
Indices: 85382690--85382751 Score: 79
Period size: 7 Copynumber: 8.7 Consensus size: 7
85382680 TAATTACACG
*
85382690 AAACCAT
1 AAACCCT
85382697 AAACCCT
1 AAACCCT
*
85382704 AAAACCT
1 AAACCCT
85382711 AAACCCT
1 AAACCCT
*
85382718 AAAATCCT
1 -AAACCCT
*
85382726 AAATCCT
1 AAACCCT
85382733 AAACCCT
1 AAACCCT
85382740 AAACCCT
1 AAACCCT
85382747 AAACC
1 AAACC
85382752 ATTTAAGTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
7 43 0.88
8 6 0.12
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:85382733 original size:22 final size:22
Alignment explanation
Indices: 85382701--85382742 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
85382691 AACCATAAAC
85382701 CCTAAAACCTAAACCCTAAAAT
1 CCTAAAACCTAAACCCTAAAAT
*
85382723 CCTAAATCCTAAACCCTAAA
1 CCTAAAACCTAAACCCTAAA
85382743 CCCTAAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (22 bp):
CCTAAAACCTAAACCCTAAAAT
Found at i:85383475 original size:48 final size:46
Alignment explanation
Indices: 85383395--85383703 Score: 235
Period size: 48 Copynumber: 6.4 Consensus size: 46
85383385 GGGTGTTACA
85383395 ATGTCTTGGACATGGCATCGGCCACAT-A-ATGGGAGCCAGTGTAAGACC
1 ATGT-TTGGACATGGCATCGG---CATGACATGGGAGCCAGTGTAAGACC
** *
85383443 ATGTTTGGAACATGGCATCGGCGATGTTATGGGAGCCAGAGTAAGACC
1 ATGTTTGG-ACATGGCATCGGC-ATGACATGGGAGCCAGTGTAAGACC
* * * * * *
85383491 ATGTCTGGGACATGGCATCGACATTGAGAAGAGAGCTAGTGTAAGACC
1 ATGT-TTGGACATGGCATCGGCA-TGACATGGGAGCCAGTGTAAGACC
* * * * **
85383539 ATGTTTAGGACATGGAATCAGCCTCGACGTATGAGCCAGTGTAAGACC
1 ATGTTT-GGACATGGCATCGGCAT-GACATGGGAGCCAGTGTAAGACC
* * ** * *
85383587 ATGTCTGGGACATGGCATCGGCCTCGACATCTGAGCTAGTGTAAGACT
1 ATGT-TTGGACATGGCATCGGCAT-GACATGGGAGCCAGTGTAAGACC
* * *
85383635 ATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACC
1 ATGT-TTGGACATGGCATCGGCAT-GACATGGGAGCCAGTGTAAGACC
* *
85383683 ATGTCTAGGACATGGCCTCGG
1 ATGT-TTGGACATGGCATCGG
85383704 TAATTTACCC
Statistics
Matches: 219, Mismatches: 33, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.00
46 2 0.01
47 7 0.03
48 205 0.94
49 4 0.02
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (46 bp):
ATGTTTGGACATGGCATCGGCATGACATGGGAGCCAGTGTAAGACC
Found at i:85383540 original size:96 final size:93
Alignment explanation
Indices: 85383427--85383698 Score: 278
Period size: 96 Copynumber: 2.8 Consensus size: 93
85383417 CACATAATGG
* *
85383427 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTATGGGAGCCAGAGTAAGACCA
1 GAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCGGCGATG-TAT-GGAGCCAGTGTAAGACCA
* * *
85383492 TGTCTGGGACATGGCATCGACATTGAGAAGA
63 TGTCTGGGACATGGCATCGACATCGACAACA
* * *
85383523 GAGCTAGTGTAAGACCATGTTTAGGACATGGAATCAGCCTCGACGTAT-GAGCCAGTGTAAGACC
1 GAGCTAGTGTAAGACCATGTTT-GGACATGGCATC-G--GCGATGTATGGAGCCAGTGTAAGACC
* * * *
85383587 ATGTCTGGGACATGGCATCGGCCTCGACATCT
62 ATGTCTGGGACATGGCATCGACATCGACAACA
* * * *
85383619 GAGCTAGTGTAAGACTATGTCTGGGACATGGCATCGGC-CTCGACATGTGAGCCAGTGTAAGACC
1 GAGCTAGTGTAAGACCATGT-TTGGACATGGCATCGGCGAT-G-TATG-GAGCCAGTGTAAGACC
*
85383683 ATGTCTAGGACATGGC
62 ATGTCTGGGACATGGC
85383699 CTCGGTAATT
Statistics
Matches: 147, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
93 2 0.01
94 2 0.01
95 1 0.01
96 131 0.89
97 4 0.03
98 3 0.02
99 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.22
Consensus pattern (93 bp):
GAGCTAGTGTAAGACCATGTTTGGACATGGCATCGGCGATGTATGGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACATCGACAACA
Found at i:85383676 original size:144 final size:144
Alignment explanation
Indices: 85383427--85383697 Score: 364
Period size: 144 Copynumber: 1.9 Consensus size: 144
85383417 CACATAATGG
* ** *
85383427 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTATGGGAGCCAGAGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCGATGACATCGGAGCCAGAGTAAGACCA
* * * *
85383492 TGTCTGGGACATGGCATCGACATTGAGAAGAGAGCTAGTGTAAGACCATGTTTAGGACATGGAAT
66 TGTCTGGGACATGGCATCGACATCGACAAGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAAT
85383557 CAGCCTCGACGTAT
131 CAGCCTCGACGTAT
* * * * * *
85383571 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGACATCTGAGCTAGTGTAAGACT
1 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCGAT-GACATCGGAGCCAGAGTAAGACC
* * * *
85383635 ATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTCTAGGACATGG
65 ATGTCTGGGACATGGCATCGACATCGACAAGAGAGCCAGTGTAAGACCATGTCTAGGACATGG
85383698 CCTCGGTAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
143 1 0.01
144 107 0.99
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (144 bp):
GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCGATGACATCGGAGCCAGAGTAAGACCA
TGTCTGGGACATGGCATCGACATCGACAAGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAAT
CAGCCTCGACGTAT
Found at i:85390950 original size:18 final size:19
Alignment explanation
Indices: 85390910--85390959 Score: 75
Period size: 18 Copynumber: 2.6 Consensus size: 19
85390900 TTACAAAAAG
85390910 TATCGATATCCATATGATTTT
1 TATCGATA-CCATAT-ATTTT
85390931 TATCGATACCATAT-TTTT
1 TATCGATACCATATATTTT
85390949 TATCGATACCA
1 TATCGATACCA
85390960 AAGTTGCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 15 0.52
20 6 0.21
21 8 0.28
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.44
Consensus pattern (19 bp):
TATCGATACCATATATTTT
Found at i:85393182 original size:28 final size:27
Alignment explanation
Indices: 85393119--85393270 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
85393109 ATATTAAGTC
* * *
85393119 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
85393146 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
85393174 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
85393201 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
85393229 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
85393256 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85393271 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:85393203 original size:55 final size:55
Alignment explanation
Indices: 85393119--85393270 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
85393109 ATATTAAGTC
* * *
85393119 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
85393174 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
85393229 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
85393271 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:85401295 original size:27 final size:27
Alignment explanation
Indices: 85401278--85401483 Score: 196
Period size: 27 Copynumber: 7.5 Consensus size: 27
85401268 ATATTAAGTC
85401278 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
85401305 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
85401333 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
85401360 CGCACACTTAGTACTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
85401388 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
85401415 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
85401443 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
85401470 CGCACACTTAGTGC
1 CGCACACTCAGTGC
85401484 GCACAATTTA
Statistics
Matches: 168, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
27 90 0.54
28 78 0.46
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Done.