Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 262 of 356
Found at i:86023358 original size:26 final size:26
Alignment explanation
Indices: 86023289--86023368 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
86023279 AGCATGGCTG
* *
86023289 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
86023315 ACAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
86023342 CCAGAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATTGTGGCAGAGCCA
86023368 C
1 C
86023369 TTAACAGAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
26 23 0.51
27 22 0.49
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:86023555 original size:22 final size:21
Alignment explanation
Indices: 86023527--86023591 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
86023517 GCAAATACGT
86023527 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
86023549 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
86023571 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
86023592 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:86024049 original size:27 final size:27
Alignment explanation
Indices: 86024019--86024539 Score: 515
Period size: 27 Copynumber: 19.3 Consensus size: 27
86024009 GGGGCAAAAT
* *
86024019 GGTAATTTTACCCTATAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
86024046 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
*
86024073 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
86024100 GGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
86024127 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
86024154 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
86024181 GGT-ATTTCTATCCTAC-AGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
** * *
86024207 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
86024234 GGTATTTTTACCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
86024261 GGT-ATTTCTACCTTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
86024288 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
86024315 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
86024342 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
86024369 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
86024396 AGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTTTACCCTACAAGGG-TATTTC
86024423 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
** * *
86024450 -AAAATTTCAACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
86024477 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
86024504 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
86024531 AATAATTTT
1 GGTAATTTT
86024540 GTAAATCGAG
Statistics
Matches: 415, Mismatches: 64, Indels: 30
0.82 0.13 0.06
Matches are distributed among these distances:
26 36 0.09
27 363 0.87
28 16 0.04
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:86024085 original size:54 final size:54
Alignment explanation
Indices: 86024023--86024530 Score: 653
Period size: 54 Copynumber: 9.4 Consensus size: 54
86024013 CAAAATGGTA
* * * *
86024023 ATTT-TACCCTATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
* * *
86024076 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
* * * * *
86024130 AATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
* ** * *
86024184 ATTTCTATCCTAC-AGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
* * *
86024237 ATTTTTACCCTACAAGGGTATTTTGGTATTTCTACCTTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
* * * * *
86024291 AATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
*
86024345 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
* * **
86024399 AATTCTACCCTAC-AGGGTTATTTCGGTATTTCTACCCTACAAGGGTATTTCAAA
1 ATTTCTACCCTACAAGGG-TATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
* * * *
86024453 ATTTCAACCCTACAAGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
* * *
86024507 AATTCTACCCTATAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
86024531 AATAATTTTG
Statistics
Matches: 396, Mismatches: 55, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
53 55 0.14
54 337 0.85
55 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGT
Found at i:86024553 original size:81 final size:81
Alignment explanation
Indices: 86024048--86024537 Score: 727
Period size: 81 Copynumber: 6.1 Consensus size: 81
86024038 GGTATCTCGG
* * *
86024048 TAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCC
1 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
* *
86024113 TACAGGGGTATTTTAG
66 TACAGGGGTATTTCAA
*
86024129 TAATTCTACCCTACAGGGGTATTTC-GATATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
1 TAATTCTACCCTACAGGGGTATTTCAG-TATTTCTACCCTACAAGGGTATTTCGGTATTTCTACC
86024193 CTACA-GGGTATTTCAA
65 CTACAGGGGTATTTCAA
* * * *
86024209 TAATTCTACCCTACAGGGGTATTTCGGTATTTTTACCCTACAAGGGTATTTTGGTATTTCTACCT
1 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
*
86024274 TACAGGGGTATTTCAG
66 TACAGGGGTATTTCAA
86024290 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
* **
86024355 TACAAGGGTATTTCGG
66 TACAGGGGTATTTCAA
*
86024371 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC-AGGGTTATTTCGGTATTTCTACC
1 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGG-TATTTCGGTATTTCTACC
*
86024435 CTACAAGGGTATTTCAA
65 CTACAGGGGTATTTCAA
* * ** *
86024452 -AATTTCAACCCTACAAGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACC
1 TAA-TTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACC
*
86024516 CTATAGGGGTATTTCAA
65 CTACAGGGGTATTTCAA
86024533 TAATT
1 TAATT
86024538 TTGTAAATCG
Statistics
Matches: 376, Mismatches: 26, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
80 79 0.21
81 291 0.77
82 6 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
TACAGGGGTATTTCAA
Found at i:86024629 original size:82 final size:81
Alignment explanation
Indices: 86024522--86024940 Score: 318
Period size: 81 Copynumber: 5.3 Consensus size: 81
86024512 TACCCTATAG
* ** * * *
86024522 GGGTATTTCAATAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATTGGGGGTACTTT-G
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTAAAATAGTAATTTTGCAAATTGAGGGTA-TTTCG
*
86024586 ATAATTTTTACAAGTCGA
65 ATAA-TTTTACAAATCGA
* ***
86024604 GGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAATTGAGGGTATTTCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTAAAATAGTAATTTTGCAAATTGAGGGTATTTCGA
86024669 TAATTTTACAAATCGA
66 TAATTTTACAAATCGA
* ** * * *
86024685 GGGTATTTCAGTAATTTTAC-AAT-GAATGGT-ATTTCGATAATTTTACAAATCGAGGGTATTTC
1 GGGTATTTCAGTAATTTTACAAATCG-AGGGTAAAATAG-TAATTTTGCAAATTGAGGGTATTTC
*
86024747 -AGTAATTTTAC-AATCAA
64 GA-TAATTTTACAAATCGA
** * * * ** * * *
86024764 CAGTATTTCGGTAA-TTT-GATAT-TTGGGT--AAT--T--TTAT--AAATCGGGGGTACTTT-G
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTAAAATAGTAATTTTGCAAATTGAGGGTA-TTTCG
* *
86024817 GTAATTTTACAAGTCGA
65 ATAATTTTACAAATCGA
*** * * * *
86024834 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTAAAATAGTAATTTTGCAAATTGAGGGTATTTCGA
86024899 TAATTTTACAAATCGA
66 TAATTTTACAAATCGA
86024915 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
86024941 TGCTATTTCG
Statistics
Matches: 269, Mismatches: 48, Indels: 42
0.75 0.13 0.12
Matches are distributed among these distances:
69 20 0.07
70 18 0.07
71 6 0.02
72 3 0.01
73 5 0.02
75 1 0.00
76 1 0.00
77 4 0.01
78 5 0.02
79 25 0.09
80 48 0.18
81 79 0.29
82 54 0.20
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCGAGGGTAAAATAGTAATTTTGCAAATTGAGGGTATTTCGA
TAATTTTACAAATCGA
Found at i:86024725 original size:26 final size:27
Alignment explanation
Indices: 86024522--86025036 Score: 284
Period size: 27 Copynumber: 19.6 Consensus size: 27
86024512 TACCCTATAG
* **
86024522 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
** * ** * *
86024549 GGGTAAAAT-GGTAATTTTGTAAATTGG
1 GGGT-ATTTCGATAATTTTACAAATCGA
*
86024576 GGGTACTTT-GATAATTTTTACAAGTCGA
1 GGGTA-TTTCGATAA-TTTTACAAATCGA
*
86024604 GGGTATTT-TAGTAATTTTACAAATCGA
1 GGGTATTTCGA-TAATTTTACAAATCGA
* * *
86024631 GGGTATTT-TAGTAATTTTGCAAATTGA
1 GGGTATTTCGA-TAATTTTACAAATCGA
86024658 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
86024685 GGGTATTTC-AGTAATTTTAC-AAT-GAA
1 GGGTATTTCGA-TAATTTTACAAATCG-A
*
86024711 TGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
*
86024738 GGGTATTTC-AGTAATTTTAC-AATCAA
1 GGGTATTTCGA-TAATTTTACAAATCGA
** * * * **
86024764 CAGTATTTCGGTAA-TTT-GATAT-TT
1 GGGTATTTCGATAATTTTACAAATCGA
*
86024788 GGGTAATTT---T-A---T--AAATCGG
1 GGGT-ATTTCGATAATTTTACAAATCGA
* *
86024807 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGATAATTTTACAAATCGA
86024834 GGGTATTTC-AGTAATTTTACAAATCGA
1 GGGTATTTCGA-TAATTTTACAAATCGA
*
86024861 GGGTATTT-TAGTAATTTTACAAA-CTGA
1 GGGTATTTCGA-TAATTTTACAAATC-GA
* *
86024888 AGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
86024915 GGGTATTTC-AGTAATTTTAC-AATCGA
1 GGGTATTTCGA-TAATTTTACAAATCGA
* * *
86024941 TGCTATTTCGGTAATTTTAC-AATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
* * * * *
86024967 TGCTATTTCGGTAATTTTATAAA-CTGG
1 GGGTATTTCGATAATTTTACAAATC-GA
* * *
86024994 GGGTACTTTAG-TAATTTTACAACT-GG
1 GGGTA-TTTCGATAATTTTACAAATCGA
86025020 GGGTATTTC-AGTAATTT
1 GGGTATTTCGA-TAATTT
86025037 GGTAAACTAA
Statistics
Matches: 394, Mismatches: 56, Indels: 77
0.75 0.11 0.15
Matches are distributed among these distances:
18 4 0.01
19 8 0.02
21 2 0.01
22 2 0.01
24 2 0.01
25 14 0.04
26 104 0.26
27 233 0.59
28 25 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCGA
Found at i:86024756 original size:27 final size:27
Alignment explanation
Indices: 86024591--86025036 Score: 382
Period size: 27 Copynumber: 17.1 Consensus size: 27
86024581 CTTTGATAAT
* *
86024591 TTTTACAAGTCGAGGGTATTTTAGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
*
86024618 TTTTACAAATCGAGGGTATTTTAGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
* *
86024645 TTTTGCAAATTGAGGGTATTTC-GATAA
1 TTTTACAAATCGAGGGTATTTCAG-TAA
86024672 TTTTACAAATCGAGGGTATTTCAGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
*
86024699 TTTTAC-AAT-GAATGGTATTTC-GATAA
1 TTTTACAAATCG-AGGGTATTTCAG-TAA
86024725 TTTTACAAATCGAGGGTATTTCAGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
* ** *
86024752 TTTTAC-AATCAACAGTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
* * **
86024778 -TTT-GATAT-TTGGGTAATTT---T-A
1 TTTTACAAATCGAGGGT-ATTTCAGTAA
* *
86024799 ---T--AAATCGGGGGTACTTT-GGTAA
1 TTTTACAAATCGAGGGTA-TTTCAGTAA
*
86024821 TTTTACAAGTCGAGGGTATTTCAGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
*
86024848 TTTTACAAATCGAGGGTATTTTAGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
* *
86024875 TTTTACAAA-CTGAAGGTATTTCGGTAA
1 TTTTACAAATC-GAGGGTATTTCAGTAA
86024902 TTTTACAAATCGAGGGTATTTCAGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
* * *
86024929 TTTTAC-AATCGATGCTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
* * *
86024955 TTTTAC-AATCGATGCTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
* *
86024981 TTTTATAAA-CTGGGGGTACTTT-AGTAA
1 TTTTACAAATC-GAGGGTA-TTTCAGTAA
* *
86025008 TTTTACAACT-GGGGGTATTTCAGTAA
1 TTTTACAAATCGAGGGTATTTCAGTAA
86025034 TTT
1 TTT
86025037 GGTAAACTAA
Statistics
Matches: 351, Mismatches: 41, Indels: 55
0.79 0.09 0.12
Matches are distributed among these distances:
18 4 0.01
19 8 0.02
21 2 0.01
22 2 0.01
24 2 0.01
25 15 0.04
26 106 0.30
27 205 0.58
28 7 0.02
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TTTTACAAATCGAGGGTATTTCAGTAA
Found at i:86024879 original size:123 final size:123
Alignment explanation
Indices: 86024669--86024904 Score: 329
Period size: 123 Copynumber: 1.9 Consensus size: 123
86024659 GGTATTTCGA
*
86024669 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATGAATGGTATTTCGATAATTTTACAAA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATGAAGGGTATTTCGATAATTTTACAAA
86024734 TCGAGGGTATTTCAGTAATTTTAC-AA-TCAACAGTATTTCGGTAATTTGATATTTGGG
66 TCGAGGGTATTTCAGTAATTTTACAAACTCAA-AGTATTTCGGTAATTTGATATTTGGG
* * *
86024791 TAATTTTATAAATCGGGGGTACTTT-GGTAATTTTACAAGTCG-AGGGTATTTC-AGTAATTTTA
1 TAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-T-GAAGGGTATTTCGA-TAATTTTA
* * *
86024853 CAAATCGAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGGTAATTT
62 CAAATCGAGGGTATTTCAGTAATTTTACAAACTCAAAGTATTTCGGTAATTT
86024905 TACAAATCGA
Statistics
Matches: 101, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
122 32 0.32
123 48 0.48
124 18 0.18
125 3 0.03
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (123 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATGAAGGGTATTTCGATAATTTTACAAA
TCGAGGGTATTTCAGTAATTTTACAAACTCAAAGTATTTCGGTAATTTGATATTTGGG
Found at i:86024957 original size:203 final size:204
Alignment explanation
Indices: 86024587--86024983 Score: 531
Period size: 203 Copynumber: 2.0 Consensus size: 204
86024577 GGTACTTTGA
* * *
86024587 TAATTTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCA
1 TAATTTTTACAAGTCGAGGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACA
* * * *
86024652 AATTGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATGAATGGTAT
66 AATCGAGGGTATTTAGATAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATGAAGGGTAT
*
86024717 TTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACAG-TATTTCGGTAATTT
131 TTCGATAATTTTACAAATCGAGGCTATTTCAGTAATTTTACAATCAA-AGCTATTTCGGTAATTT
86024781 GATATTTGGG
195 GATATTTGGG
* * *
86024791 TAATTTTATA-AA-TCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
1 TAATTTT-TACAAGTCGAGGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
*
86024854 AAATCGAGGGTATTTTAG-TAATTTTACAAA-CTGAAGGTATTTCGGTAATTTTACAAATCG-AG
65 AAATCGAGGGTA-TTTAGATAATTTTACAAATC-GAAGGTATTTCAGTAATTTTAC-AAT-GAAG
* * * *
86024916 GGTATTTC-AGTAATTTTAC-AATCGATGCTATTTCGGTAATTTTACAATCGATGCTATTTCGGT
126 GGTATTTCGA-TAATTTTACAAATCGAGGCTATTTCAGTAATTTTACAATCAAAGCTATTTCGGT
86024979 AATTT
190 AATTT
86024984 TATAAACTGG
Statistics
Matches: 170, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
202 2 0.01
203 131 0.77
204 34 0.20
205 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (204 bp):
TAATTTTTACAAGTCGAGGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACA
AATCGAGGGTATTTAGATAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATGAAGGGTAT
TTCGATAATTTTACAAATCGAGGCTATTTCAGTAATTTTACAATCAAAGCTATTTCGGTAATTTG
ATATTTGGG
Found at i:86024962 original size:230 final size:230
Alignment explanation
Indices: 86024558--86024985 Score: 707
Period size: 230 Copynumber: 1.9 Consensus size: 230
86024548 AGGGTAAAAT
* * *
86024558 GGTAATTTTGTAAATTGGGGGTACTTTGATAATTTTTACAAGTCGAGGGTATTTTAGTAATTTTA
1 GGTAATTTTATAAATCGGGGGTACTTTGATAATTTTTACAAGTCGAGGGTATTTCAGTAATTTTA
* * *
86024623 CAAATCGAGGGTATTTTAGTAATTTTGCAAATTGAGGGTATTTCGATAATTTTACAAATCGAGGG
66 CAAATCGAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGATAATTTTACAAATCGAGGG
* *
86024688 TATTTCAGTAATTTTACAATGAATGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAAT
131 TATTTCAGTAATTTTACAATGAATGCTATTTCGATAATTTTAC-AATCGAGGCTATTTCAGTAAT
86024753 TTTACAATCAACAGTATTTCGGTAATTTGATATTTG
195 TTTACAATCAACAGTATTTCGGTAATTTGATATTTG
*
86024789 GGTAATTTTATAAATCGGGGGTACTTTGGTAA-TTTTACAAGTCGAGGGTATTTCAGTAATTTTA
1 GGTAATTTTATAAATCGGGGGTACTTTGATAATTTTTACAAGTCGAGGGTATTTCAGTAATTTTA
*
86024853 CAAATCGAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGGTAATTTTACAAATCGAGGG
66 CAAATCGAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGATAATTTTACAAATCGAGGG
* * *
86024918 TATTTCAGTAATTTTACAATCG-ATGCTATTTCGGTAATTTTACAATCGATGCTATTTCGGTAAT
131 TATTTCAGTAATTTTACAAT-GAATGCTATTTCGATAATTTTACAATCGAGGCTATTTCAGTAAT
86024982 TTTA
195 TTTA
86024986 TAAACTGGGG
Statistics
Matches: 183, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
229 22 0.12
230 131 0.72
231 30 0.16
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (230 bp):
GGTAATTTTATAAATCGGGGGTACTTTGATAATTTTTACAAGTCGAGGGTATTTCAGTAATTTTA
CAAATCGAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGATAATTTTACAAATCGAGGG
TATTTCAGTAATTTTACAATGAATGCTATTTCGATAATTTTACAATCGAGGCTATTTCAGTAATT
TTACAATCAACAGTATTTCGGTAATTTGATATTTG
Found at i:86028299 original size:40 final size:40
Alignment explanation
Indices: 86028244--86028410 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
86028234 TATTCGGATG
* * *
86028244 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
86028284 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
86028324 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
86028364 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
86028404 ATATCCG
1 ATATCCG
86028411 ACTAAATCTC
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
40 114 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:86031241 original size:23 final size:22
Alignment explanation
Indices: 86031215--86031262 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
86031205 GATTTAGCCA
*
86031215 TTTTTTAATTTTTACTTTAATAT
1 TTTTTTAATTTTTAATTTAAT-T
**
86031238 TTTTTTTGTTTTTAATTTAATT
1 TTTTTTAATTTTTAATTTAATT
86031260 TTT
1 TTT
86031263 ACATTCTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (22 bp):
TTTTTTAATTTTTAATTTAATT
Found at i:86031275 original size:13 final size:12
Alignment explanation
Indices: 86031218--86031276 Score: 50
Period size: 12 Copynumber: 4.8 Consensus size: 12
86031208 TTAGCCATTT
*
86031218 TTTAATTTTTAC
1 TTTAATTTTTAA
86031230 TTTAATATTTT--
1 TTTAAT-TTTTAA
**
86031241 TTTTGTTTTTAA
1 TTTAATTTTTAA
86031253 TTTAATTTTTACA
1 TTTAATTTTTA-A
86031266 TTCTAATTTTT
1 TT-TAATTTTT
86031277 TTCATTTGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 4 0.11
11 4 0.11
12 15 0.39
13 7 0.18
14 8 0.21
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTAATTTTTAA
Found at i:86038677 original size:13 final size:13
Alignment explanation
Indices: 86038659--86038686 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86038649 CTAAGCCACC
86038659 TCACACGGGCATG
1 TCACACGGGCATG
86038672 TCACACGGGCATG
1 TCACACGGGCATG
86038685 TC
1 TC
86038687 CTTGTCGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (13 bp):
TCACACGGGCATG
Found at i:86040835 original size:39 final size:40
Alignment explanation
Indices: 86040684--86040853 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
86040674 GGACTAAGAT
* * *
86040684 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
86040724 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
86040764 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
86040804 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
86040843 CCGAAGGCATT
1 CCGAAGGCATT
86040854 TGAATGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:86040873 original size:79 final size:80
Alignment explanation
Indices: 86040706--86040888 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
86040696 GTGCGAGATA
* * * *
86040706 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
86040771 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
86040786 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
86040850 CATTTGAATGAGGAG
66 CATTCGAACGAGGAG
* *
86040865 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
86040889 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:86048743 original size:39 final size:40
Alignment explanation
Indices: 86048592--86048761 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
86048582 GGACTAAGAT
* * *
86048592 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
86048632 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
86048672 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
86048712 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
86048751 CCGAAGGCATT
1 CCGAAGGCATT
86048762 TGAATGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:86048781 original size:79 final size:80
Alignment explanation
Indices: 86048614--86048796 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
86048604 GTGCGAGATA
* * * *
86048614 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
86048679 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
86048694 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
86048758 CATTTGAATGAGGAG
66 CATTCGAACGAGGAG
* *
86048773 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
86048797 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:86051532 original size:25 final size:27
Alignment explanation
Indices: 86051504--86051555 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86051494 TTAAAGAGAG
*
86051504 ACCACATAAAA-GA-AATATGGTAAAT
1 ACCACATAAAATAACAATATGGTAAAT
*
86051529 ACCATATAAAATAACAATATGGTAAAT
1 ACCACATAAAATAACAATATGGTAAAT
86051556 TTCTTAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 10 0.43
26 1 0.04
27 12 0.52
ACGTcount: A:0.56, C:0.12, G:0.10, T:0.23
Consensus pattern (27 bp):
ACCACATAAAATAACAATATGGTAAAT
Found at i:86053633 original size:11 final size:12
Alignment explanation
Indices: 86053617--86053645 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
86053607 TTGTTCTCCC
86053617 TTTATTTTA-TA
1 TTTATTTTATTA
86053628 TTTATTTTATTA
1 TTTATTTTATTA
86053640 TTTATT
1 TTTATT
86053646 ATTCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTATTTTATTA
Found at i:86053665 original size:24 final size:26
Alignment explanation
Indices: 86053618--86053665 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
86053608 TGTTCTCCCT
* *
86053618 TTATTTTATATTTATTTTATTATTTA
1 TTATTCTATATTTATTTTAGTATTTA
86053644 TTATTCTA-ATTT-TTTTAGTATT
1 TTATTCTATATTTATTTTAGTATT
86053666 ATTTTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 4 0.20
26 7 0.35
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (26 bp):
TTATTCTATATTTATTTTAGTATTTA
Found at i:86059914 original size:48 final size:48
Alignment explanation
Indices: 86059833--86060060 Score: 229
Period size: 48 Copynumber: 4.9 Consensus size: 48
86059823 GTCGATGCCA
* *
86059833 ATGCCAATGTCATGTCCTAGACATGGTCTTACATGGGATCGTAGATTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATTG
* * *
86059881 ATGCGAATGCCATGTCCCAGACTTGGTCTTACATGGGTTTC-TAGATTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ATCGTAGATTG
* * *
86059929 ATGCCAATGCCACGTCCCAAACATGGTCTTACATGGGATTGTAGATTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATTG
* ** *** *
86059977 ATGCCAAT---A-G-CCTAG-CTATGGTCTTACATGAAATTACATATTG
1 ATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCGTAGATTG
*
86060020 ATGCCAAAGCCATGTCCC-GAACATGGTCTTACATGGGATCG
1 ATGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGATCG
86060061 CATATAACCT
Statistics
Matches: 146, Mismatches: 24, Indels: 20
0.77 0.13 0.11
Matches are distributed among these distances:
42 1 0.01
43 31 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 3 0.02
48 105 0.72
49 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATTG
Found at i:86060043 original size:91 final size:94
Alignment explanation
Indices: 86059853--86060060 Score: 255
Period size: 91 Copynumber: 2.2 Consensus size: 94
86059843 CATGTCCTAG
* **
86059853 ACATGGTCTTACATGGGATCGTAGATTGATGCGAATGCCATGTCCCAGACTTGGTCTTACATGGG
1 ACATGGTCTTACATGGGATCGTAGATTGATGCCAAT--CATGTCCCAGACTTGGTCTTACATGAA
* *
86059918 TTTCTAGATTGATGCCAATGCCACGTCCCAA
64 TTACTAGATTGATGCCAAAGCCACGTCCCAA
* *
86059949 ACATGGTCTTACATGGGATTGTAGATTGATGCCAAT-A-G-CCTAG-CTATGGTCTTACATGAAA
1 ACATGGTCTTACATGGGATCGTAGATTGATGCCAATCATGTCCCAGACT-TGGTCTTACATG-AA
* * *
86060010 TTAC-ATATTGATGCCAAAGCCATGTCCCGA
64 TTACTAGATTGATGCCAAAGCCACGTCCCAA
86060040 ACATGGTCTTACATGGGATCG
1 ACATGGTCTTACATGGGATCG
86060061 CATATAACCT
Statistics
Matches: 99, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
90 2 0.02
91 58 0.59
92 4 0.04
93 1 0.01
96 34 0.34
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (94 bp):
ACATGGTCTTACATGGGATCGTAGATTGATGCCAATCATGTCCCAGACTTGGTCTTACATGAATT
ACTAGATTGATGCCAAAGCCACGTCCCAA
Found at i:86060065 original size:48 final size:47
Alignment explanation
Indices: 86059778--86060062 Score: 208
Period size: 48 Copynumber: 5.9 Consensus size: 47
86059768 CACATGGTAG
* * *
86059778 GATGCCAATGCCATATCCCGAATATGGTCTTACATGGGATCAC-G-TGT
1 GATGCCAATGCCATGTCCC-AACATGGTCTTACATGGGATCGCAGAT-T
*
86059825 CGATGCCAATGCCAATGTCATGTCCTAGACATGGTCTTACATGGGATCGTAGATT
1 -GATGCCAATGCC-ATGTC----CC-A-ACATGGTCTTACATGGGATCGCAGATT
* * * *
86059880 GATGCGAATGCCATGTCCCAGACTTGGTCTTACATGGGTTTC-TAGATT
1 GATGCCAATGCCATGTCCCA-ACATGGTCTTACATGGG-ATCGCAGATT
* * *
86059928 GATGCCAATGCCACGTCCCAAACATGGTCTTACATGGGATTGTAGATT
1 GATGCCAATGCCATGTCCC-AACATGGTCTTACATGGGATCGCAGATT
* * ** ** *
86059976 GATGCCAAT---A-G-CCTAGCTATGGTCTTACATGAAATTACATATT
1 GATGCCAATGCCATGTCCCAAC-ATGGTCTTACATGGGATCGCAGATT
*
86060019 GATGCCAAAGCCATGTCCCGAACATGGTCTTACATGGGATCGCA
1 GATGCCAATGCCATGTCCC-AACATGGTCTTACATGGGATCGCA
86060063 TATAACCTTA
Statistics
Matches: 192, Mismatches: 27, Indels: 36
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.01
43 30 0.16
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 103 0.54
49 11 0.06
53 8 0.04
54 30 0.16
55 2 0.01
56 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
GATGCCAATGCCATGTCCCAACATGGTCTTACATGGGATCGCAGATT
Found at i:86061745 original size:46 final size:46
Alignment explanation
Indices: 86061692--86061782 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
86061682 TATATATACA
** * **
86061692 CATCTCATACATGTCTCGCATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCGCATTAACCATTCAGCTTTACCACATATC
* *
86061738 CATCTCATACACATTTCGCATTAACCATTCAGCTTTCCCACATAT
1 CATCTCATACACATCTCGCATTAACCATTCAGCTTTACCACATAT
86061783 ATATACACAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCGCATTAACCATTCAGCTTTACCACATATC
Found at i:86061829 original size:22 final size:22
Alignment explanation
Indices: 86061801--86061923 Score: 60
Period size: 22 Copynumber: 5.3 Consensus size: 22
86061791 ATCCACGTTC
86061801 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
86061823 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
86061848 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
86061870 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
86061894 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
86061917 ATCACAT
1 ATCACAT
86061924 ATATACATGT
Statistics
Matches: 76, Mismatches: 7, Indels: 36
0.64 0.06 0.30
Matches are distributed among these distances:
22 25 0.33
23 17 0.22
24 16 0.21
25 18 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:86061970 original size:22 final size:22
Alignment explanation
Indices: 86061846--86061970 Score: 76
Period size: 22 Copynumber: 5.4 Consensus size: 22
86061836 ATGTTCACAT
*
86061846 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGACC
* *
86061868 TTATCACATATATG-CATGTTC-ACA
1 TTATCACAT-T-GGCCA--TTCGACC
*
86061892 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGACC
*** *
86061915 TTATCACATATATACATGTTC-ACA
1 TTATCACAT-TGGCCA--TTCGACC
86061939 TTCATCACATTGGCCATTCGACC
1 TT-ATCACATTGGCCATTCGACC
86061962 TTATCACAT
1 TTATCACAT
86061971 ATATGCAGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 24
0.66 0.13 0.21
Matches are distributed among these distances:
22 29 0.38
23 14 0.18
24 13 0.17
25 20 0.26
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGACC
Found at i:86062248 original size:47 final size:47
Alignment explanation
Indices: 86061798--86062246 Score: 718
Period size: 47 Copynumber: 9.6 Consensus size: 47
86061788 CACATCCACG
* *
86061798 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
86061845 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
86061892 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
86061939 TTCATCACATTGGCCATTCGACCTTATCACATATATGCAGGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
86061986 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
86062033 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCAGGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
86062080 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
86062127 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
** * * *
86062174 TTCATCACATTTTCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
86062221 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
86062247 GCTCATGTAT
Statistics
Matches: 380, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 380 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:86069468 original size:24 final size:25
Alignment explanation
Indices: 86069435--86069499 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 25
86069425 TCTATTTTCA
* *
86069435 TTTTATTTGTTTTATTTA-TGTTAT
1 TTTTAGTTGTTTTATTTATTGTTAG
* ** *
86069459 TTTTGGTTGTACT-TTTATTTTTAG
1 TTTTAGTTGTTTTATTTATTGTTAG
86069483 TTTTAGTTGTTTTATTT
1 TTTTAGTTGTTTTATTT
86069500 TGATTTGTGA
Statistics
Matches: 30, Mismatches: 9, Indels: 3
0.71 0.21 0.07
Matches are distributed among these distances:
23 4 0.13
24 23 0.77
25 3 0.10
ACGTcount: A:0.14, C:0.02, G:0.12, T:0.72
Consensus pattern (25 bp):
TTTTAGTTGTTTTATTTATTGTTAG
Found at i:86075349 original size:16 final size:16
Alignment explanation
Indices: 86075328--86075361 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
86075318 CAACATATGT
86075328 TAAAACAAACTATATA
1 TAAAACAAACTATATA
86075344 TAAAACAAACTATATA
1 TAAAACAAACTATATA
86075360 TA
1 TA
86075362 TACAGAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAACAAACTATATA
Found at i:86078558 original size:40 final size:40
Alignment explanation
Indices: 86078501--86078652 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
86078491 CGGATGATAA
*
86078501 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
86078541 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
86078581 CCGGGCTAAGTTCCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
* * * * *
86078621 CCGGGTTATGCCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
86078653 AGCTATATCC
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 94 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:86098843 original size:20 final size:20
Alignment explanation
Indices: 86098818--86098858 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
86098808 TTACTTCTCG
86098818 TAACCAAAACTCGCACTTAC
1 TAACCAAAACTCGCACTTAC
86098838 TAACCAAAACTCGCACTTAC
1 TAACCAAAACTCGCACTTAC
86098858 T
1 T
86098859 GAACTTGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.34, G:0.05, T:0.22
Consensus pattern (20 bp):
TAACCAAAACTCGCACTTAC
Found at i:86105635 original size:40 final size:39
Alignment explanation
Indices: 86105583--86105780 Score: 220
Period size: 40 Copynumber: 5.0 Consensus size: 39
86105573 GTAAAAGTGA
* *
86105583 ATTTAGGAGTATCATAGTACAAATAGGGGCACGTATGTGC
1 ATTTAGGGGTATCA-AGTACAAATAGGGGCACTTATGTGC
* *
86105623 ATTTAGGGGTATCAAAGTACAAATAGGAGCACTTAGGTGC
1 ATTTAGGGGTATC-AAGTACAAATAGGGGCACTTATGTGC
* * * *
86105663 ATTCA-GGGTACTGAAGTACAAACAAGGGCACTTATGTGC
1 ATTTAGGGGTA-TCAAGTACAAATAGGGGCACTTATGTGC
* *
86105702 ATTCAGGGGTATCGAAGTACAAACAGGGGCACTTATGTGC
1 ATTTAGGGGTATC-AAGTACAAATAGGGGCACTTATGTGC
* *
86105742 ATTTAGGGGTA-CAAAATTACAAATAAGGGCACTTATGTG
1 ATTTAGGGGTATC--AAGTACAAATAGGGGCACTTATGTG
86105781 TATTCATATA
Statistics
Matches: 136, Mismatches: 17, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
39 34 0.25
40 101 0.74
41 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (39 bp):
ATTTAGGGGTATCAAGTACAAATAGGGGCACTTATGTGC
Found at i:86105699 original size:79 final size:80
Alignment explanation
Indices: 86105598--86105786 Score: 254
Period size: 79 Copynumber: 2.4 Consensus size: 80
86105588 GGAGTATCAT
* * * *
86105598 AGTACAAATAGGGGCACGTATGTGCATTTAGGGGTATCAAAGTACAAATAGGAGCACTTAGGTGC
1 AGTACAAATAAGGGCACTTATGTGCATTCAGGGGTATCAAAGTACAAACAGGAGCACTTAGGTGC
**
86105663 ATTCA-GGGTACTGA
66 ATTCAGGGGTACAAA
* * * *
86105677 AGTACAAACAAGGGCACTTATGTGCATTCAGGGGTATCGAAGTACAAACAGGGGCACTTATGTGC
1 AGTACAAATAAGGGCACTTATGTGCATTCAGGGGTATCAAAGTACAAACAGGAGCACTTAGGTGC
*
86105742 ATTTAGGGGTACAAA
66 ATTCAGGGGTACAAA
* *
86105757 ATTACAAATAAGGGCACTTATGTGTATTCA
1 AGTACAAATAAGGGCACTTATGTGCATTCA
86105787 TATATATACG
Statistics
Matches: 95, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
79 61 0.64
80 34 0.36
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (80 bp):
AGTACAAATAAGGGCACTTATGTGCATTCAGGGGTATCAAAGTACAAACAGGAGCACTTAGGTGC
ATTCAGGGGTACAAA
Found at i:86110878 original size:34 final size:34
Alignment explanation
Indices: 86110840--86110939 Score: 132
Period size: 34 Copynumber: 2.9 Consensus size: 34
86110830 ATATTTTGCC
*
86110840 AAAATGAAAAAAAAATGATAA-AGCTTAAAACTAA
1 AAAATGAAAAAAAAATAATAAGA-CTTAAAACTAA
*
86110874 AAAAT-AAAACAAAAATAATAAGACTTAAAACTAC
1 AAAATGAAAA-AAAAATAATAAGACTTAAAACTAA
* *
86110908 AAAATGAAACAAAAATTATAAGACTTAAAACT
1 AAAATGAAAAAAAAATAATAAGACTTAAAACT
86110940 CTAACACCAA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
33 4 0.07
34 51 0.86
35 4 0.07
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.19
Consensus pattern (34 bp):
AAAATGAAAAAAAAATAATAAGACTTAAAACTAA
Found at i:86113249 original size:48 final size:48
Alignment explanation
Indices: 86113176--86113542 Score: 259
Period size: 48 Copynumber: 7.6 Consensus size: 48
86113166 CATGTGCGCT
* ** *
86113176 AGTGTAAGACCATGTCTGGGGCATGGCATCAGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCCATGATATGAGAGCC
* * * * * *
86113224 ATTGTAAGACCATGTTTGGAACATGGCCTCGGCGATGTTGTGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCCATGATATGAGAGCC
* * * *
86113272 AGTGTAAGACCATGTTTGGAACATGGCATC-GACGATGTTGTGAGAACC
1 AGTGTAAGACCATGTTTGGAACATGGCATCAG-CCATGATATGAGAGCC
* * * * * *
86113320 AATGTAAGACCATGTCT-CAGACATGGCATCAG-CATTAATATGTGCA-CT
1 AGTGTAAGACCATGTTTGGA-ACATGGCATCAGCCA-TGATATGAG-AGCC
* * * *
86113368 AGTGTAAGACCATGTCTGGGACATGGCATC-GACCA-CATTATGAGAGTC
1 AGTGTAAGACCATGTTTGGAACATGGCATCAG-CCATGA-TATGAGAGCC
* * * * * *
86113416 AATGTAAGACCATGTCTAGG-ACATGGCATC-GGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGT-TTGGAACATGGCATCAGCCA-TGATATGAGAGCC
* * *
86113464 AGTGTAAGACCATGTTTGGGACATGGCATCAGTCTCA--ACATGTGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCAG-C-CATGATATGAGAGCC
* *
86113512 AGTGTAAAACCATGTTTGGAACATGGTATCA
1 AGTGTAAGACCATGTTTGGAACATGGCATCA
86113543 ACAATTCACC
Statistics
Matches: 254, Mismatches: 48, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
47 11 0.04
48 233 0.92
49 8 0.03
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCAGCCATGATATGAGAGCC
Found at i:86113334 original size:25 final size:25
Alignment explanation
Indices: 86113258--86113334 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
86113248 GGCCTCGGCG
* *
86113258 ATGTTGTGAGAGCCAGTGTAAGACC
1 ATGTTGTGAGAACCAATGTAAGACC
* * *
86113283 ATGTT-TG-GAA-C-ATGGCATCGACG
1 ATGTTGTGAGAACCAAT-GTA-AGACC
86113306 ATGTTGTGAGAACCAATGTAAGACC
1 ATGTTGTGAGAACCAATGTAAGACC
86113331 ATGT
1 ATGT
86113335 CTCAGACATG
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
21 1 0.03
22 3 0.08
23 10 0.26
24 4 0.11
25 15 0.39
26 3 0.08
27 2 0.05
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (25 bp):
ATGTTGTGAGAACCAATGTAAGACC
Found at i:86113344 original size:96 final size:94
Alignment explanation
Indices: 86113173--86113493 Score: 344
Period size: 96 Copynumber: 3.4 Consensus size: 94
86113163 TGACATGTGC
* * *
86113173 GCTAGTGTAAGACCATGTCTGGGGCATGGCATC-AGCCACGATATGAGAGCCATTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCACGTTATGAGAGCCAATGTAAGACCAT
* * *
86113237 GTTTGGAACATGGCCTCGGCGATGT-TGTGAGA
65 GTCTAG-ACATGGCATCGGC-AT-TATGTGAGA
* * * * * * *
86113269 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGACGATGTTGTGAGAACCAATGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGAGCCAATGTAAGACCATG
* * *
86113334 TCTCAGACATGGCATCAGCATTAATATGTGCA
66 TCT-AGACATGGCATCGGCATT-ATGTGAG-A
* *
86113366 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGTCAATGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGAGCCAATGTAAGACCATG
*
86113430 TCTAGGACATGGCATCGGCATTGA-GACGAGA
66 TCTA-GACATGGCATCGGCATT-ATG-TGAGA
*
86113461 GCTAGTGTAAGACCATGTTTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
86113494 AGTCTCAACA
Statistics
Matches: 186, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
94 1 0.01
95 4 0.02
96 178 0.96
97 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGAGCCAATGTAAGACCATG
TCTAGACATGGCATCGGCATTATGTGAGA
Found at i:86113507 original size:144 final size:143
Alignment explanation
Indices: 86113173--86113537 Score: 382
Period size: 144 Copynumber: 2.5 Consensus size: 143
86113163 TGACATGTGC
* * *
86113173 GCTAGTGTAAGACCATGTCTGGGGCATGGCATCAGC-CACGATATGAGAGCCATTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCTCA--ATATGTGAGCCAGTGTAAGACCAT
* * * ** * * *
86113237 GTTTGGAACATGGCCTCGGCGATGTTGTGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
64 GTTTGGAACATGGCATCGACCACATTATGAGAGCCAATGTAAGACCATGTTAGGAACATGGCATC
*
86113302 GACGATGTTGTGAGAA
129 GACGA-GTTGAGAGAA
* * ** * *
86113318 -CCAATGTAAGACCATGTCTCAGACATGGCATCAGCATTAATATGTGCA-CTAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-TCAATATGTG-AGCCAGTGTAAGACCAT
* * *
86113381 GTCTGGGACATGGCATCGACCACATTATGAGAGTCAATGTAAGACCATGTCTAGG-ACATGGCAT
64 GTTTGGAACATGGCATCGACCACATTATGAGAGCCAATGTAAGACCATGT-TAGGAACATGGCAT
*
86113445 CGGC-A-TTGAGACGAGA
128 CGACGAGTTGAGA-GA-A
* * *
86113461 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGTCTCAACATGTGAGCCAGTGTAAAACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CTCAATATGTGAGCCAGTGTAAGACCATG
86113526 TTTGGAACATGG
65 TTTGGAACATGG
86113538 TATCAACAAT
Statistics
Matches: 178, Mismatches: 33, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
141 5 0.03
142 2 0.01
143 3 0.02
144 162 0.91
145 5 0.03
146 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (143 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCTCAATATGTGAGCCAGTGTAAGACCATGT
TTGGAACATGGCATCGACCACATTATGAGAGCCAATGTAAGACCATGTTAGGAACATGGCATCGA
CGAGTTGAGAGAA
Found at i:86113536 original size:96 final size:94
Alignment explanation
Indices: 86113173--86113537 Score: 328
Period size: 96 Copynumber: 3.8 Consensus size: 94
86113163 TGACATGTGC
* *
86113173 GCTAGTGTAAGACCATGTCTGGGGCATGGCATC-AGCCACGATATGAGAGCCATTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCA--ATATGAGAGCCAATGTAAGACCAT
* *
86113237 GTTTGGAACATGGCCTCGGCGA-TGTTG-TGAGA
63 GTTTGGAACATGGCATCGGC-ATTG-AGATGAGA
* * * * * * *
86113269 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGACGATGTTGTGAGAACCAATGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA--ATATGAGAGCCAATGTAAGACCATG
* * * * * *
86113334 TCT-CAGACATGGCATCAGCATTAATATGTGCA
64 TTTGGA-ACATGGCATCGGCATTGAGATGAG-A
*
86113366 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGTCAATGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-A-TATGAGAGCCAATGTAAGACCATG
* *
86113430 TCTAGG-ACATGGCATCGGCATTGAGACGAGA
64 T-TTGGAACATGGCATCGGCATTGAGATGAGA
* * * * * *
86113461 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGTCTCAACATGTGAGCCAGTGTAAAACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GAC-CAATATGAGAGCCAATGTAAGACCATG
86113526 TTTGGAACATGG
64 TTTGGAACATGG
86113538 TATCAACAAT
Statistics
Matches: 214, Mismatches: 43, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
95 6 0.03
96 201 0.94
97 5 0.02
98 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAATATGAGAGCCAATGTAAGACCATGTT
TGGAACATGGCATCGGCATTGAGATGAGA
Found at i:86117537 original size:40 final size:40
Alignment explanation
Indices: 86117493--86117640 Score: 260
Period size: 40 Copynumber: 3.7 Consensus size: 40
86117483 GCAAACACAT
* *
86117493 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
86117533 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
* *
86117573 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
86117613 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
86117641 TCCAATGCTC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
Found at i:86120510 original size:40 final size:40
Alignment explanation
Indices: 86120456--86120573 Score: 218
Period size: 40 Copynumber: 3.0 Consensus size: 40
86120446 TGGATGTAAC
* *
86120456 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
86120496 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
86120536 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
86120574 TTTTTTTCCA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:86122739 original size:43 final size:43
Alignment explanation
Indices: 86122620--86122740 Score: 133
Period size: 43 Copynumber: 2.8 Consensus size: 43
86122610 ACACGTATCG
* * *
86122620 ATGCCACTGTCCCACACAGGGTCTT--ATGCGAAGTTGATTAACA
1 ATGCCACTGTCCCACACAGGGTCTTACATG-TAA-TCGAATAACA
* *
86122663 ATGCCGA-TGTCCCACACATGGTCTTACAAGTAATCGTAAT-ACA
1 ATGCC-ACTGTCCCACACAGGGTCTTACATGTAATCG-AATAACA
86122706 ATGCCACTGTCCCACACAGGGTCTTACATGTAATC
1 ATGCCACTGTCCCACACAGGGTCTTACATGTAATC
86122741 ACATCTCAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 1 0.02
43 58 0.88
44 5 0.08
45 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCACTGTCCCACACAGGGTCTTACATGTAATCGAATAACA
Found at i:86124811 original size:20 final size:21
Alignment explanation
Indices: 86124773--86124812 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
86124763 GTTAAGATAA
86124773 CACACGGGCTTGTTGCCCTTC
1 CACACGGGCTTGTTGCCCTTC
86124794 CACACGGGCTTG-TGCCCTT
1 CACACGGGCTTGTTGCCCTT
86124813 GTCAACTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.10, C:0.38, G:0.25, T:0.28
Consensus pattern (21 bp):
CACACGGGCTTGTTGCCCTTC
Found at i:86131059 original size:48 final size:47
Alignment explanation
Indices: 86131000--86131270 Score: 224
Period size: 48 Copynumber: 5.7 Consensus size: 47
86130990 TATGTGTGCT
86131000 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATATGAGAGCC
* * * * * * * *
86131048 AGTGTAAGACCATGTTTAGAACATGGCATTGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGATATGAGAGCC
* *
86131096 AGTGTAAGACCATGTCTGGCACATGGCATCGACCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCACGA-TATGAGAGCC
* * ** * * * * *
86131144 AATGTAATACCATGTCTAAGACATGACATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGATATGAGAGCC
* * *
86131192 AGTGTAAGACCATGTCTGGGACATAGCATCGGC-CTTAACATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--GATATG-AGAGCC
* * *
86131240 AGTGTAGGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
86131271 ACAATTCACC
Statistics
Matches: 172, Mismatches: 43, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
47 4 0.02
48 164 0.95
49 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATGAGAGCC
Found at i:86131125 original size:96 final size:95
Alignment explanation
Indices: 86130987--86131270 Score: 340
Period size: 96 Copynumber: 3.0 Consensus size: 95
86130977 GACATTTGGG
*
86130987 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGATATGAGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC-ATATGAGAGCCAGTG
*
86131052 TAAGACCATGTTTAGAACATGGCATTGGCAT
65 TAAGACCATGTTTAGAACATGGCATCGGCAT
* * * * *
86131083 TGATATGTGCGCTAGTGTAAGACCATGTCTGGCACATGGCATCGACCACATTATGAGAGCCAATG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-TATGAGAGCCAGTG
* * *
86131148 TAATACCATGTCTA-AGACATGACATCGGCAT
65 TAAGACCATGTTTAGA-ACATGGCATCGGCAT
* * * * *
86131179 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCCTTA-ACATGTA-AGCCAG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-C-TACATATG-AGAGCCAG
* *
86131242 TGTAGGACCATGTTTGGAACATGGCATCG
63 TGTAAGACCATGTTTAGAACATGGCATCG
86131271 ACAATTCACC
Statistics
Matches: 158, Mismatches: 24, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
95 2 0.01
96 151 0.96
97 4 0.03
98 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (95 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATATGAGAGCCAGTGT
AAGACCATGTTTAGAACATGGCATCGGCAT
Found at i:86136824 original size:21 final size:21
Alignment explanation
Indices: 86136800--86136840 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
86136790 ATAAAAAATC
*
86136800 AATTTACATTAA-ATAATTTTA
1 AATTTAAATTAATAT-ATTTTA
86136821 AATTTAAATTAATATATTTT
1 AATTTAAATTAATATATTTT
86136841 CATTAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTTAAATTAATATATTTTA
Found at i:86140379 original size:29 final size:28
Alignment explanation
Indices: 86140336--86140413 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
86140326 GCTGGTTTTT
86140336 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
86140366 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
86140393 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
86140414 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:86140631 original size:174 final size:174
Alignment explanation
Indices: 86140366--86140693 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
86140356 AAATTGTACA
* *
86140366 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTCGATTATTAAGCACTATG
* *
86140431 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
86140496 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
86140540 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTCGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTCGATTATTAAGCACTATG
*
86140605 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
86140670 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
86140694 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTCGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:86159938 original size:29 final size:27
Alignment explanation
Indices: 86159877--86159971 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 27
86159867 TAAATTAAAA
*
86159877 ATATAAAATGTATATAAAA-AATATCATTCT
1 ATATAAAAT-TA-ATAAAATATTAT-ATT-T
86159907 ATA-AAAATTAAATAAAATATCTAATATTT
1 ATATAAAATT-AATAAAATAT-T-ATATTT
* *
86159936 ATATTAAATTAATAAAATGTTATATTT
1 ATATAAAATTAATAAAATATTATATTT
86159963 ATATAAAAT
1 ATATAAAAT
86159972 AAACCCCCCG
Statistics
Matches: 56, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
27 14 0.25
28 8 0.14
29 20 0.36
30 12 0.21
31 2 0.04
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (27 bp):
ATATAAAATTAATAAAATATTATATTT
Found at i:86159971 original size:27 final size:30
Alignment explanation
Indices: 86159906--86159971 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 30
86159896 AATATCATTC
86159906 TATA-AAAATTAAATAAAATATCTAATATT
1 TATATAAAATTAAATAAAATATCTAATATT
* *
86159935 TATATTAAATT-AATAAAATGT-T-ATATT
1 TATATAAAATTAAATAAAATATCTAATATT
86159962 TATATAAAAT
1 TATATAAAAT
86159972 AAACCCCCCG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 14 0.42
28 1 0.03
29 13 0.39
30 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (30 bp):
TATATAAAATTAAATAAAATATCTAATATT
Found at i:86165651 original size:20 final size:20
Alignment explanation
Indices: 86165628--86165667 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
86165618 TCCATATAAA
86165628 AAAAGCTTTCTTAATATCTT
1 AAAAGCTTTCTTAATATCTT
* *
86165648 AAAATCTTTCTTAATTTCTT
1 AAAAGCTTTCTTAATATCTT
86165668 TTTTCATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.50
Consensus pattern (20 bp):
AAAAGCTTTCTTAATATCTT
Found at i:86166934 original size:36 final size:36
Alignment explanation
Indices: 86166893--86166964 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
86166883 TCATCTACAA
86166893 CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT
1 CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT
86166929 CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT
1 CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT
86166965 GTTTAGAAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.19, C:0.14, G:0.11, T:0.56
Consensus pattern (36 bp):
CTTTCTTTTCTTAACTATGCTTTTGATGATTAGATT
Found at i:86168963 original size:22 final size:22
Alignment explanation
Indices: 86168935--86168982 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
86168925 CGAGTAAATA
86168935 GTTAAACTTCAATTCTGGTTTG
1 GTTAAACTTCAATTCTGGTTTG
86168957 GTTAAACTTCAATTCTGGTTTG
1 GTTAAACTTCAATTCTGGTTTG
86168979 GTTA
1 GTTA
86168983 GGATGGAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (22 bp):
GTTAAACTTCAATTCTGGTTTG
Found at i:86172056 original size:79 final size:78
Alignment explanation
Indices: 86171954--86172176 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
86171944 GCTCCTCATT
* *
86171954 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACTCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
86172019 ATTTAGTATCTCGCA
64 AATTAGTATCTCGCA
* *
86172034 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCGG
86172097 AATTAGTATCTCGCA
64 AATTAGTATCTCGCA
* * * * * *
86172112 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAACCCG
86172175 GA
63 GA
86172177 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGAA
TTAGTATCTCGCA
Found at i:86172075 original size:39 final size:40
Alignment explanation
Indices: 86171954--86172176 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
86171944 GCTCCTCATT
* *
86171954 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
86171994 CAAATGCCTTCGGGACTTAACTCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
86172034 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
86172073 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
86172112 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
86172153 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86172177 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 90 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:86180048 original size:39 final size:40
Alignment explanation
Indices: 86179930--86180113 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
86179920 GCTCCTCGTT
* *
86179930 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTA-ATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTATA-TCGCA
* * *
86179970 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATATCGCA
86180010 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATATCGCA
* *
86180049 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACT-TAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-A-TATCGCA
86180090 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86180114 CATCATCAAA
Statistics
Matches: 127, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
38 2 0.02
39 49 0.39
40 64 0.50
41 11 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATATCGCA
Found at i:86180074 original size:79 final size:82
Alignment explanation
Indices: 86179930--86180113 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 82
86179920 GCTCCTCGTT
* *
86179930 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
86179994 GAT-TTAGT-A-TCTCGCA
66 GATATT-GTCACT-TAGCA
**
86180010 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATATCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
86180071 CGGATATTGTCACTTAGCA
64 CGGATATTGTCACTTAGCA
86180090 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86180114 CATCATCAAA
Statistics
Matches: 92, Mismatches: 5, Indels: 15
0.82 0.04 0.13
Matches are distributed among these distances:
78 14 0.15
79 54 0.59
80 23 0.25
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GATATTGTCACTTAGCA
Found at i:86181900 original size:40 final size:40
Alignment explanation
Indices: 86181856--86181962 Score: 187
Period size: 40 Copynumber: 2.7 Consensus size: 40
86181846 CCAACCCAAT
* *
86181856 TGCCTTCGGGATTTAGCCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
86181896 TGCCTTCGGGACTTAACCCGAATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
86181936 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGATATAA
86181963 TGCTCAATTG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:86188580 original size:40 final size:40
Alignment explanation
Indices: 86188536--86188800 Score: 467
Period size: 40 Copynumber: 6.6 Consensus size: 40
86188526 CCAACCTAAT
* *
86188536 TGCCTTCGGGATTTAGCCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
* * *
86188576 TGCCTTCGGGACTTATCCCGGAAATAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
86188616 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
86188656 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
86188696 TGCCTTCGGGACTTAACCCGGATATAAAAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
86188736 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
86188776 TGCCTTCGGGACTTAACCCAGATAT
1 TGCCTTCGGGACTTAACCCGGATAT
86188801 GATCCTCAAT
Statistics
Matches: 215, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:86196535 original size:17 final size:18
Alignment explanation
Indices: 86196503--86196537 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
86196493 TCCCTAGCCC
*
86196503 CATTTTTAATGTTCTTTG
1 CATTTTTAAAGTTCTTTG
86196521 CATTTTTAAAG-TCTTTG
1 CATTTTTAAAGTTCTTTG
86196538 AAGCATGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (18 bp):
CATTTTTAAAGTTCTTTG
Found at i:86201221 original size:49 final size:49
Alignment explanation
Indices: 86201160--86201391 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
86201150 TTGGTACGTA
* * *
86201160 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAGACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** ** *
86201209 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
86201259 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
* *
86201310 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
86201359 TAGTAGCCTGCACTCAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
86201392 TCACAATAGA
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 72 0.47
50 45 0.29
51 37 0.24
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:86201330 original size:101 final size:98
Alignment explanation
Indices: 86201160--86201391 Score: 299
Period size: 101 Copynumber: 2.3 Consensus size: 98
86201150 TTGGTACGTA
* * *
86201160 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAGACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTAGACATAGTAGCCTGCACTTA
*
86201225 GTACTACACACGTGACCTAACCATAT-GA-TACACG
66 GTACTACACACGTGACC-AA--ATATCCAGTACACG
* * *
86201259 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG-CATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTA-GACATAGTAGCCTGCAC
* *
86201323 TTAGTACTACACATGTGACCAATTATCCAGTACACG
63 TTAGTACTACACACGTGACCAAATATCCAGTACACG
*
86201359 TAGTAGCCTGCACTCAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
86201392 TCACAATAGA
Statistics
Matches: 116, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
98 3 0.03
99 30 0.26
100 40 0.34
101 42 0.36
102 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTAGACATAGTAGCCTGCACTTA
GTACTACACACGTGACCAAATATCCAGTACACG
Found at i:86215045 original size:47 final size:47
Alignment explanation
Indices: 86214988--86215291 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
86214978 ATTGATGTAC
* * *
86214988 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
86215035 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
86215084 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
86215131 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* ** *
86215178 AAGTGTATATATGAGATAAAACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
86215225 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
86215272 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
86215292 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 190 0.81
49 46 0.19
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:86218676 original size:27 final size:27
Alignment explanation
Indices: 86218646--86218729 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
86218636 TGCCAGAAAT
* *
86218646 AGTAAATGTGGCAAAGCCACTAGTATC
1 AGTAAATGTGGCAAAGCCACCAGTAAC
* *
86218673 AGTAATTGTGGCATAGCCACCAGTAAC
1 AGTAAATGTGGCAAAGCCACCAGTAAC
* * * * *
86218700 AGTGAATCTGACATAGTCACCAGT-AC
1 AGTAAATGTGGCAAAGCCACCAGTAAC
86218726 AGTA
1 AGTA
86218730 CTTCCTCCAA
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 5 0.11
27 42 0.89
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTAAC
Found at i:86218908 original size:27 final size:27
Alignment explanation
Indices: 86218866--86219066 Score: 285
Period size: 27 Copynumber: 7.4 Consensus size: 27
86218856 ACGGCTACTC
* * *
86218866 GTCATTTTGCCATACAGGGGTATCACG
1 GTCATTTTACCCTACAGGGGTATTACG
86218893 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* **
86218920 GTCATTTTACCCTACAAGGGTATTATA
1 GTCATTTTACCCTACAGGGGTATTACG
* *
86218947 GTCATTTTACCCTACATGTGGTATTACA
1 GTCATTTTACCCTACA-GGGGTATTACG
86218975 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
86219002 GTCATTTTACCTTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* *
86219029 GTCATTTTACCCTACATGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
86219056 GTCATTTTACC
1 GTCATTTTACC
86219067 TATTTTAGGG
Statistics
Matches: 156, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
27 132 0.85
28 24 0.15
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:86219060 original size:109 final size:109
Alignment explanation
Indices: 86218866--86219066 Score: 339
Period size: 109 Copynumber: 1.8 Consensus size: 109
86218856 ACGGCTACTC
* *
86218866 GTCATTTTGCCATACAGGGGTATCACGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACC
1 GTCATTTTACCATACAGGGGTATCACGGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACC
86218931 CTACAAGGGTATTATAGTCATTTTACCCTACATGTGGTATTACA
66 CTACAAGGGTATTATAGTCATTTTACCCTACATGTGGTATTACA
* * *
86218975 GTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCTTACAGGGGTATTACAGTCATTTTACC
1 GTCATTTTACCATACAGGGGTATCACGGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACC
* *
86219040 CTACATGGGTATTATGGTCATTTTACC
66 CTACAAGGGTATTATAGTCATTTTACC
86219067 TATTTTAGGG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
109 85 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (109 bp):
GTCATTTTACCATACAGGGGTATCACGGTCATTTTACCCTACAGGGGTATTACAGTCATTTTACC
CTACAAGGGTATTATAGTCATTTTACCCTACATGTGGTATTACA
Found at i:86220462 original size:16 final size:18
Alignment explanation
Indices: 86220436--86220469 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
86220426 AGAGAGGAAA
86220436 AAAATACCAAAG-CAAGG
1 AAAATACCAAAGCCAAGG
86220453 AAAA-ACCAAAGCCAAGG
1 AAAATACCAAAGCCAAGG
86220470 TCTCCAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.59, C:0.21, G:0.18, T:0.03
Consensus pattern (18 bp):
AAAATACCAAAGCCAAGG
Found at i:86224718 original size:41 final size:42
Alignment explanation
Indices: 86224609--86224773 Score: 140
Period size: 42 Copynumber: 3.9 Consensus size: 42
86224599 AATCATACTA
* * * * **
86224609 ATGCCATATCCCGGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
* *
86224651 ATGCCAATAGCCCAGCTATGGTCTTACATG-ATTCTCATATCG
1 ATGCC-ATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
* * *
86224693 ATGCCAT-GTCCCAGACT-TGTTCTTACCCGAAATCTCATATTG
1 ATGCCATAG-CCCAG-CTATGGTCTTACACGAAATCTCATATCG
* * *
86224735 ATGCCATATCCTAGATATGGTCTTACACGTAAA-CTCATA
1 ATGCCATAGCCCAGCTATGGTCTTACACG-AAATCTCATA
86224774 ACCCTAATTT
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
40 1 0.01
41 17 0.17
42 59 0.58
43 24 0.24
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
Found at i:86228914 original size:35 final size:35
Alignment explanation
Indices: 86228865--86228962 Score: 133
Period size: 35 Copynumber: 2.8 Consensus size: 35
86228855 GTATGTACAA
* *
86228865 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGTTATATTGAACTTGTATATTTGACCAC
* * * *
86228900 ATGTAATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGTTATATTGAACTTGTATATTTGACCAC
*
86228935 ATGTGATGTTATATTGAGCTTGTATATT
1 ATGTGATGTTATATTGAACTTGTATATT
86228963 CGGTCATAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (35 bp):
ATGTGATGTTATATTGAACTTGTATATTTGACCAC
Found at i:86228996 original size:35 final size:35
Alignment explanation
Indices: 86228938--86229017 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 35
86228928 TGACTACATG
* * *
86228938 TGATGTTATATTGAGCTTGTATATTCGGTCATAAA
1 TGATGATATATTGAGCTTATATATTCGGCCATAAA
* **
86228973 TGATGATATATTGTA-CTTATATATTGGGCCATATG
1 TGATGATATATTG-AGCTTATATATTCGGCCATAAA
86229008 TGATGATATA
1 TGATGATATA
86229018 ATGAATCTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 37 0.97
36 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (35 bp):
TGATGATATATTGAGCTTATATATTCGGCCATAAA
Found at i:86228997 original size:70 final size:70
Alignment explanation
Indices: 86228865--86229039 Score: 165
Period size: 70 Copynumber: 2.5 Consensus size: 70
86228855 GTATGTACAA
* ** *
86228865 ATGTGATGATATATTGAACTTGTATATTTGGCCACATGTAATGTTATATTAAACTTGAATATTTG
1 ATGTGATGATATATTGAACTTGTATATTCGGCCACAAATAATGATATATTAAACTTGAATATTTG
86228930 ACTAC
66 ACTAC
* * * * * ** *
86228935 ATGTGATGTTATATTGAGCTTGTATATTCGGTCATAAATGATGATATATTGTACTT-ATATATTG
1 ATGTGATGATATATTGAACTTGTATATTCGGCCACAAATAATGATATATTAAACTTGA-ATATTT
* * *
86228999 GGCCAT
65 GACTAC
*
86229005 ATGTGATGATATAATGAATCTTG-AGTATTCGGCCA
1 ATGTGATGATATATTGAA-CTTGTA-TATTCGGCCA
86229040 TACAAGTAAG
Statistics
Matches: 83, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
69 1 0.01
70 69 0.83
71 13 0.16
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (70 bp):
ATGTGATGATATATTGAACTTGTATATTCGGCCACAAATAATGATATATTAAACTTGAATATTTG
ACTAC
Found at i:86232673 original size:35 final size:35
Alignment explanation
Indices: 86232627--86232693 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
86232617 TACAGTAAGG
86232627 AGTTTTCAATCATGGTACTTCCTGTGAACTGATCA
1 AGTTTTCAATCATGGTACTTCCTGTGAACTGATCA
86232662 AGTTTTCAATCATGGTACTTCCTGTGAACTGA
1 AGTTTTCAATCATGGTACTTCCTGTGAACTGA
86232694 CTCCATGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (35 bp):
AGTTTTCAATCATGGTACTTCCTGTGAACTGATCA
Found at i:86233528 original size:68 final size:69
Alignment explanation
Indices: 86233451--86233585 Score: 191
Period size: 68 Copynumber: 2.0 Consensus size: 69
86233441 TTTTAATAGT
* ** *
86233451 TTAATATTAAATTAAATTTAAGACTTATCTTAAT-TGTATTTTATTAATTTAAGATTAAAGTGAT
1 TTAATATTAAATTAAATCTAAGACTTATCTTAATAAATATTATATTAATTTAAGATTAAAGTGAT
86233515 TATC
66 TATC
* * * *
86233519 TTAATATTAAATTCAATCTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTAAATCTAAGACTTATCTTAATAAATATTATATTAATTTAAGATTAAAGTGAT
86233584 TA
66 TA
86233586 AGTTTAATTA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
68 30 0.52
69 28 0.48
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.48
Consensus pattern (69 bp):
TTAATATTAAATTAAATCTAAGACTTATCTTAATAAATATTATATTAATTTAAGATTAAAGTGAT
TATC
Found at i:86238864 original size:21 final size:21
Alignment explanation
Indices: 86238840--86238909 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
86238830 CACATCCATC
86238840 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** *
86238861 ATGAGTTCAGATGCCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
*
86238885 ATGAACTCAGACCGCAACTCA
1 ATGAACTCAGACCACAACTCA
86238906 ATGA
1 ATGA
86238910 GTTCATATCA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 2 0.05
21 14 0.38
22 4 0.11
23 5 0.14
24 10 0.27
25 2 0.05
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:86252042 original size:27 final size:26
Alignment explanation
Indices: 86251971--86252054 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 26
86251961 AGCATAACTG
* * * *
86251971 CCAGAAACAGTAAATATGGCAAAACCA
1 CCAGTAACAGT-AATGTGGCATAGCCA
* *
86251998 CCAGTATCAATAATTGTGGCATAGCCA
1 CCAGTAACAGTAA-TGTGGCATAGCCA
* *
86252025 CCAGTAACAGTGAATGTGACATAGTCA
1 CCAGTAACAGT-AATGTGGCATAGCCA
86252052 CCA
1 CCA
86252055 ATATAGTACG
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
26 2 0.04
27 41 0.91
28 2 0.04
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.19
Consensus pattern (26 bp):
CCAGTAACAGTAATGTGGCATAGCCA
Found at i:86252256 original size:27 final size:27
Alignment explanation
Indices: 86252226--86252317 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
86252216 GGGTATCACG
*
86252226 GTCATTTTACCCTACAAGGGCATTATA
1 GTCATTTTACCCTACAAGGGTATTATA
* * *
86252253 GTCATTTTACCCTATAGGGGTATTATG
1 GTCATTTTACCCTACAAGGGTATTATA
* *
86252280 GTTATTTTACCCTAC-AGGAGTATTACA
1 GTCATTTTACCCTACAAGG-GTATTATA
*
86252307 GTTATTTTACC
1 GTCATTTTACC
86252318 TATTTTAGGG
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTATA
Found at i:86252287 original size:54 final size:54
Alignment explanation
Indices: 86252211--86252317 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
86252201 CATTTCGCCA
*
86252211 TATAGGGGTATCACGGTCATTTTACCCTACAAGG-GCATTATAGTCATTTTACCC
1 TATAGGGGTATCACGGTCATTTTACCCTAC-AGGAGCATTACAGTCATTTTACCC
* * * * *
86252265 TATAGGGGTATTATGGTTATTTTACCCTACAGGAGTATTACAGTTATTTTACC
1 TATAGGGGTATCACGGTCATTTTACCCTACAGGAGCATTACAGTCATTTTACC
86252318 TATTTTAGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.07
54 43 0.93
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (54 bp):
TATAGGGGTATCACGGTCATTTTACCCTACAGGAGCATTACAGTCATTTTACCC
Found at i:86255900 original size:28 final size:28
Alignment explanation
Indices: 86255868--86255933 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
86255858 ACAATGCATG
* *
86255868 CAGTAACAGTCTGGGCTTAAGCCCTATT
1 CAGTAACAGTCTGGGCCTAAGCCCTATA
* *
86255896 CAGTAACAGTGTGGGCCTATGCCCTATA
1 CAGTAACAGTCTGGGCCTAAGCCCTATA
86255924 CAGTAACAGT
1 CAGTAACAGT
86255934 ACAGTGTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTAAGCCCTATA
Found at i:86256154 original size:27 final size:26
Alignment explanation
Indices: 86256088--86256174 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
86256078 AATTGCTAGA
*
86256088 AACAGTAAATGTGGCAAAGTCACCAGT
1 AACAGT-AATGTGGCATAGTCACCAGT
* * * *
86256115 ATCAATACCTGTGGCATAGCCACCAGT
1 AACAGTA-ATGTGGCATAGTCACCAGT
*
86256142 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGT-AATGTGGCATAGTCACCAGT
86256169 -ACAGTA
1 AACAGTA
86256175 CTTCCTCCAT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
25 1 0.02
26 6 0.12
27 40 0.83
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGTCACCAGT
Found at i:86256357 original size:27 final size:27
Alignment explanation
Indices: 86256338--86256509 Score: 245
Period size: 27 Copynumber: 6.4 Consensus size: 27
86256328 GGGTTTCACA
*
86256338 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
86256365 GTCATTTTACCCTATAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* *
86256392 ATCATTTTACCCTACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
*
86256419 GTCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
86256446 GTCATTTTACCATACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
86256473 GTGATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
86256500 ATCATTTTAC
1 GTCATTTTAC
86256510 ATATTTTGGG
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:86256397 original size:54 final size:54
Alignment explanation
Indices: 86256339--86256509 Score: 270
Period size: 54 Copynumber: 3.2 Consensus size: 54
86256329 GGTTTCACAG
* * *
86256339 TCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTACAA
1 TCATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTACAGGGGTATTACAA
* **
86256393 TCATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTACAAGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTACAGGGGTATTACAA
* *
86256447 TCATTTTACCATACAGGGGTATTATGGTGATTTTACCCTACAGGGGTATTACAA
1 TCATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTACAGGGGTATTACAA
86256501 TCATTTTAC
1 TCATTTTAC
86256510 ATATTTTGGG
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTACAGGGGTATTACAA
Found at i:86261116 original size:23 final size:23
Alignment explanation
Indices: 86261087--86261130 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
86261077 CTTAGGCTCG
86261087 AAAAATGATTTTTATCACATTCA
1 AAAAATGATTTTTATCACATTCA
86261110 AAAAATGATTTTTATCACATT
1 AAAAATGATTTTTATCACATT
86261131 TTCTTACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (23 bp):
AAAAATGATTTTTATCACATTCA
Found at i:86263741 original size:47 final size:45
Alignment explanation
Indices: 86263644--86263770 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 45
86263634 GTCCATCTGT
* *
86263644 GTCGATGCCGTGTCCCAGATA-GGTCTTACACTAACACATATCAA
1 GTCGATGCCATGTCCCAGAAATGGTCTTACACTAACACATATCAA
* * * *
86263688 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
1 GTCGATGCCATGTCCCAGAAATGGTCTTACACTA--ACACATATCAA
* *
86263735 GTCGATGCCATGTCCTAAAAATGGTCTTACACTAAC
1 GTCGATGCCATGTCCCAGAAATGGTCTTACACTAAC
86263771 TATCATCGTC
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
44 18 0.26
45 13 0.19
47 39 0.56
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (45 bp):
GTCGATGCCATGTCCCAGAAATGGTCTTACACTAACACATATCAA
Found at i:86286609 original size:79 final size:81
Alignment explanation
Indices: 86286473--86286655 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
86286463 TCGAATGATG
* *
86286473 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
86286537 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
86286552 TTCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
86286614 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
86286632 ACCGGGCTATGTTCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
86286656 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 28 0.31
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:86286664 original size:40 final size:39
Alignment explanation
Indices: 86286474--86286657 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
86286464 CGAATGATGT
* * * *
86286474 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
86286514 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
86286554 CCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86286592 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
86286633 CCGGGCTATGTTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86286658 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86286679 original size:79 final size:79
Alignment explanation
Indices: 86286526--86286690 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
86286516 GGACTAAGAT
* ***
86286526 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
86286591 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
86286605 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTTCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
86286668 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
86286684 CCGAAGG
1 CCGAAGG
86286691 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:86293934 original size:42 final size:42
Alignment explanation
Indices: 86293856--86294005 Score: 132
Period size: 42 Copynumber: 3.6 Consensus size: 42
86293846 AATCATACCA
*
86293856 ATGCC-ATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCAATAGCCCAGATATGGTCTTACAT-GGATCTCATATCG
*
86293898 ATGCCAATAGCCCAGCTATGGTCTTACAT-GATTCTCATATCG
1 ATGCCAATAGCCCAGATATGGTCTTACATGGA-TCTCATATCG
* ** * *
86293940 ATGCC-AT-GTCCCAGACATATTCTTACACGAAATCTCATAAT-G
1 ATGCCAATAG-CCCAGATATGGTCTTACATG-GATCTCAT-ATCG
* *
86293982 ATGCC-ATATCCTAGATATGGTCTT
1 ATGCCAATAGCCCAGATATGGTCTT
86294006 CACGTAAACT
Statistics
Matches: 88, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.01
41 18 0.20
42 45 0.51
43 24 0.27
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCAATAGCCCAGATATGGTCTTACATGGATCTCATATCG
Found at i:86298146 original size:35 final size:35
Alignment explanation
Indices: 86298106--86298285 Score: 182
Period size: 35 Copynumber: 5.1 Consensus size: 35
86298096 TAGGTATGTA
*
86298106 CATATGTGATGATATATTGAACTTGTATATTTGGC
1 CATATGTGATGATATATTGAACTTGTATATTCGGC
* * * * * *
86298141 CATATGTAATGTTATATTAAACTTGAATATTTGAC
1 CATATGTGATGATATATTGAACTTGTATATTCGGC
* * * * *
86298176 TACATGTGATGTTATATTGAGCTTGTATATTCGGT
1 CATATGTGATGATATATTGAACTTGTATATTCGGC
** * *
86298211 CATAAATGATGATATATTGTACTTGTATATTGGGC
1 CATATGTGATGATATATTGAACTTGTATATTCGGC
*
86298246 CATATGTGATGATATAATGAATCTTG-AGTATTCGGC
1 CATATGTGATGATATATTGAA-CTTGTA-TATTCGGC
86298282 CATA
1 CATA
86298286 CAAGTAAGTA
Statistics
Matches: 115, Mismatches: 28, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
35 100 0.87
36 15 0.13
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (35 bp):
CATATGTGATGATATATTGAACTTGTATATTCGGC
Found at i:86300388 original size:24 final size:24
Alignment explanation
Indices: 86300361--86300431 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
86300351 TTGTCAGGAG
*
86300361 AGGATTTAAGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
86300385 AGGATTTAGGAGTTGATGAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
86300409 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
86300432 GGAAATCTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:86301887 original size:27 final size:27
Alignment explanation
Indices: 86301847--86301958 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
86301837 AGGAAGCGTC
*
86301847 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
86301874 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
86301901 CTGGTGGCTCTGCCACAATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* * *
86301929 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
86301955 CTGG
1 CTGG
86301959 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:86301953 original size:54 final size:54
Alignment explanation
Indices: 86301847--86301958 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
86301837 AGGAAGCGTC
* *
86301847 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
86301901 CTGGTGGCTCTGCCACAATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTT
86301955 CTGG
1 CTGG
86301959 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:86304356 original size:12 final size:12
Alignment explanation
Indices: 86304341--86304368 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
86304331 ATGGCCAAGT
86304341 ACACGGCCTGGC
1 ACACGGCCTGGC
86304353 ACACGGCCTGGC
1 ACACGGCCTGGC
86304365 ACAC
1 ACAC
86304369 AGGCGTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.43, G:0.29, T:0.07
Consensus pattern (12 bp):
ACACGGCCTGGC
Found at i:86305410 original size:35 final size:35
Alignment explanation
Indices: 86305364--86305430 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
86305354 TACAATAAGG
86305364 AGTTTTCAATCATGGTACTTCCTGTGAACTGATCA
1 AGTTTTCAATCATGGTACTTCCTGTGAACTGATCA
86305399 AGTTTTCAATCATGGTACTTCCTGTGAACTGA
1 AGTTTTCAATCATGGTACTTCCTGTGAACTGA
86305431 CTCCATGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (35 bp):
AGTTTTCAATCATGGTACTTCCTGTGAACTGATCA
Found at i:86306306 original size:68 final size:66
Alignment explanation
Indices: 86306189--86306320 Score: 174
Period size: 68 Copynumber: 2.0 Consensus size: 66
86306179 TTTTAATAGT
* ** *
86306189 TTAATATTAATAAATTTAAGACTTATCTTAATTGTATTTTATTAATTTAAGATTAAAGTGATTAT
1 TTAATATTAATAAATCTAAGACTTATCTTAATAATATTATATTAATTTAAGATTAAAGTGATTAT
86306254 C
66 C
* * * *
86306255 TTAATATTAATTCAATCTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGATT
1 TTAATATTAA-TAAATCTAAGACTTATCTTAAT-AATATTATATTAATTTAAGATTAAAGTGATT
86306320 A
64 A
86306321 AGTGTAATTA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 10 0.18
67 18 0.32
68 28 0.50
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (66 bp):
TTAATATTAATAAATCTAAGACTTATCTTAATAATATTATATTAATTTAAGATTAAAGTGATTAT
C
Found at i:86306308 original size:16 final size:16
Alignment explanation
Indices: 86306255--86306311 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
86306245 AGTGATTATC
86306255 TTAATATTA-ATTCAAT
1 TTAATATTATATT-AAT
* *
86306271 CTAATATTTATCTTAA-
1 TTAATA-TTATATTAAT
*
86306287 TAAATATTATATTAAT
1 TTAATATTATATTAAT
86306303 TTAATATTA
1 TTAATATTA
86306312 AAGTGATTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
15 8 0.25
16 17 0.53
17 5 0.16
18 2 0.06
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATATTATATTAAT
Found at i:86312573 original size:47 final size:47
Alignment explanation
Indices: 86312510--86312770 Score: 477
Period size: 47 Copynumber: 5.6 Consensus size: 47
86312500 CAGCCAAGAC
*
86312510 AGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
86312557 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
86312604 AGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
86312651 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
86312698 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
86312745 AGTGTATATATGTGATAAGGCCTAAT
1 AGTGTATATATGTGATAAGGCCTAAT
86312771 AGTGTATATA
Statistics
Matches: 208, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 208 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:86312785 original size:120 final size:121
Alignment explanation
Indices: 86312651--86313011 Score: 510
Period size: 120 Copynumber: 3.0 Consensus size: 121
86312641 TGAATGTGAA
*
86312651 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86312716 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
86312771 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
86312836 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-G
* *
86312893 ACGATGTGATGA-ATGTGA-AAGTG--T-ATA---TATGTGAT-AAGGCCT-AATAGTGTATATA
1 A-G-TGT-AT-ATATGTGATAAG-GCCTAATAGCCGATGTGATGAATG--TGAA-AGTGTATATA
*
86312948 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATG
58 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
86313012 GCCGATGTGA
Statistics
Matches: 223, Mismatches: 8, Indels: 21
0.88 0.03 0.08
Matches are distributed among these distances:
118 3 0.01
119 10 0.04
120 188 0.84
122 4 0.02
123 2 0.01
124 6 0.03
125 9 0.04
126 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (121 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
Found at i:86312791 original size:167 final size:167
Alignment explanation
Indices: 86312604--86313093 Score: 917
Period size: 167 Copynumber: 2.9 Consensus size: 167
86312594 TGAATGTGAA
* * * *
86312604 AGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
* * *
86312669 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTG
86312734 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
86312771 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
86312836 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTG
86312901 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
86312938 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
86313003 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTG
86313068 ATGAATGTGAAAGTGTATATATGTGA
131 ATGAATGTGAAAGTGTATATATGTGA
86313094 CAGGGCCGAG
Statistics
Matches: 316, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
167 316 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (167 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
Found at i:86312824 original size:47 final size:47
Alignment explanation
Indices: 86312771--86312939 Score: 302
Period size: 47 Copynumber: 3.6 Consensus size: 47
86312761 AAGGCCTAAT
86312771 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
86312818 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
86312865 AGTGTATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
86312912 AGTGTATATATGTGATAAGGCCTAATAG
1 AGTGTATATATGTGATAAGGCCTAATAG
86312940 TGTATATATG
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 117 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:86312926 original size:214 final size:211
Alignment explanation
Indices: 86312510--86313144 Score: 870
Period size: 214 Copynumber: 3.0 Consensus size: 211
86312500 CAGCCAAGAC
* * *
86312510 AGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGG-CTAAT--ACGATGTGATGAAGGTGAAAGTGTATATATGTGATAA
*
86312575 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTG
63 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
86312640 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
128 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
86312705 ATATGTGATAAGGCCTAAT
193 ATATGTGATAAGGCCTAAT
*
86312724 AGCCGATGTGATGA-ATGTGA-AAGTG-T-ATA-TATGTGAT-AAGGCCT-AATAGTGTATATAT
1 A---G-TGT-AT-ATATGTGATAAG-GCTAATACGATGTGATGAAGG--TGAA-AGTGTATATAT
* *
86312782 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGC
56 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
86312847 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAA
121 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
86312912 AGTGTATATATGTGATAAGGCCTAAT
186 AGTGTATATATGTGATAAGGCCTAAT
* *
86312938 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATATGTGATAAGG-CTAATA--CGATGTGATGAAGGTGAAAGTGTATATATGTGATAA
*
86313003 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTG
63 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * * * *
86313068 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCAT
128 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
86313133 AAATGTGGTAAG
193 ATATGTGATAAG
86313145 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 27, Indels: 40
0.85 0.06 0.09
Matches are distributed among these distances:
208 1 0.00
209 9 0.02
210 6 0.02
211 2 0.01
212 6 0.02
213 9 0.02
214 310 0.83
215 9 0.02
216 5 0.01
217 1 0.00
218 6 0.02
219 9 0.02
220 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (211 bp):
AGTGTATATATGTGATAAGGCTAATACGATGTGATGAAGGTGAAAGTGTATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAAT
Found at i:86312965 original size:26 final size:26
Alignment explanation
Indices: 86312745--86312798 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
86312735 TGAATGTGAA
86312745 AGTGTATATATGTGATAAGGCCTAAT
1 AGTGTATATATGTGATAAGGCCTAAT
86312771 AGTGTATATATGTGATAAGGCCTAAT
1 AGTGTATATATGTGATAAGGCCTAAT
86312797 AG
1 AG
86312799 CCGATGTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.33
Consensus pattern (26 bp):
AGTGTATATATGTGATAAGGCCTAAT
Found at i:86312991 original size:47 final size:47
Alignment explanation
Indices: 86312938--86313144 Score: 297
Period size: 47 Copynumber: 4.4 Consensus size: 47
86312928 AAGGCCTAAT
*
86312938 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
86312985 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
86313032 AGTGTATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
86313079 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
86313126 AGTGCATAAATGTGGTAAG
1 AGTGTATATATGTGATAAG
86313145 TCCCGAAGGG
Statistics
Matches: 143, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 143 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:86313031 original size:120 final size:120
Alignment explanation
Indices: 86312698--86313057 Score: 488
Period size: 120 Copynumber: 3.0 Consensus size: 120
86312688 TGAATGTGAA
* *
86312698 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
* *
86312763 GGCCTAAT--A-G-TGT-AT-ATATGTGATAAG-GCCTAATAGCCGATGTGATGAATG--TGAA-
66 GGCCTAATGGACGATGTGATGA-ATGTGA-AAGTG--T-ATA---TATGTGAT-AAGGCCT-AAT
* *
86312818 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
86312883 GGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 GGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
86312938 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
*
86313003 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 GGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
86313058 GGACGATGTG
Statistics
Matches: 222, Mismatches: 8, Indels: 20
0.89 0.03 0.08
Matches are distributed among these distances:
118 3 0.01
119 9 0.04
120 188 0.85
122 4 0.02
123 2 0.01
124 6 0.03
125 9 0.04
126 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (120 bp):
AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
GGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
Found at i:86313321 original size:37 final size:37
Alignment explanation
Indices: 86313263--86313341 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
86313253 CCAAGCTCTA
* *
86313263 AAGACCCGATGACTACATGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAG-ATTATGTCCGGGT
* *
86313300 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
86313337 AAGAC
1 AAGAC
86313342 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:86315254 original size:43 final size:43
Alignment explanation
Indices: 86315206--86315308 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
86315196 TTGGTTTTCA
86315206 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
86315249 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
86315292 GCACCAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
86315309 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:86315324 original size:29 final size:29
Alignment explanation
Indices: 86315290--86315363 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
86315280 GTTGTGAGAT
* * *
86315290 TGGCACCAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
86315319 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
86315348 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
86315364 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:86315758 original size:40 final size:40
Alignment explanation
Indices: 86315682--86315857 Score: 169
Period size: 40 Copynumber: 4.4 Consensus size: 40
86315672 GATGTCCGGG
* * *
86315682 CTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGAA
1 CTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGAA
* * *
86315722 TTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGA
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGAA
**
86315762 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGAA
*** * * **
86315802 CTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGG
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGAA
*
86315842 CT-AGGTCCGAAGAGCA
1 CTAAGTTCCGAAGAGCA
86315858 ATCATGCTGG
Statistics
Matches: 115, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
39 11 0.10
40 90 0.78
41 7 0.06
42 7 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGAA
Found at i:86319456 original size:47 final size:47
Alignment explanation
Indices: 86319398--86319839 Score: 731
Period size: 47 Copynumber: 9.4 Consensus size: 47
86319388 CAGCCAAGAC
86319398 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
86319445 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
86319492 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
86319539 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
86319586 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
86319633 AGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATGAATGTTAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
86319680 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
86319727 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
86319774 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
86319821 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
86319840 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 374 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:86320014 original size:37 final size:37
Alignment explanation
Indices: 86319960--86320031 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
86319950 GACCTCTAAA
* *
86319960 GACCCGATGACTACGTGTGG-GAATTTTGTCCGGGTGG
1 GACCCGATAACTACGTGTGGAG-ATTATGTCCGGGTGG
*
86319997 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGT
86320032 AAGACTTCGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 30 0.97
38 1 0.03
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.28
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCGGGTGG
Found at i:86331953 original size:27 final size:27
Alignment explanation
Indices: 86331923--86332048 Score: 130
Period size: 27 Copynumber: 4.6 Consensus size: 27
86331913 AAATTGTACA
86331923 GCACTAAGTGTGCGATTCAACTATGTT
1 GCACTAAGTGTGCGATTCAACTATGTT
* * *
86331950 GCACTAAGTGTGCGAAATGAA-TATGAT
1 GCACTAAGTGTGCG-ATTCAACTATGTT
* * **
86331977 GCACTAAGTGTGCGAATT-GACCATGCG
1 GCACTAAGTGTGCG-ATTCAACTATGTT
* *
86332004 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGATTC-AACTATGTT
86332032 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
86332049 TGATTACGTG
Statistics
Matches: 81, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
26 3 0.04
27 53 0.65
28 25 0.31
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTCAACTATGTT
Found at i:86332046 original size:55 final size:52
Alignment explanation
Indices: 86331922--86332075 Score: 157
Period size: 55 Copynumber: 2.9 Consensus size: 52
86331912 TAAATTGTAC
* * *
86331922 AGCACTAAGTGTGCG-ATTCAACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
86331975 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * * *
86332030 TAGCACTAAGTGTGCGATTTGATTACGTGGCACGAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
86332076 TGATTGTATA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
53 3 0.04
54 35 0.42
55 45 0.54
56 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:86332068 original size:82 final size:81
Alignment explanation
Indices: 86331923--86332078 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
86331913 AAATTGTACA
* * * *
86331923 GCACTAAGTGTGCGATTCAACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACGAAGTGT
86331988 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
86332004 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACGAAGT
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACGAAGT
*
86332068 GTGCGAGTTGA
64 GTGCGAATTGA
86332079 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACGAAGTGT
GCGAATTGACCATGCG
Found at i:86332089 original size:27 final size:27
Alignment explanation
Indices: 86332030--86332099 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
86332020 TCTAACTATG
* * *
86332030 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACGAAGTGTGCGAGTTGATTACA
* **
86332057 TGGCACGAAGTGTGCGAGTTGATTGTA
1 TAGCACGAAGTGTGCGAGTTGATTACA
86332084 TAGCACTG-AGTGTGCG
1 TAGCAC-GAAGTGTGCG
86332100 GGCTCAATAT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.30
Consensus pattern (27 bp):
TAGCACGAAGTGTGCGAGTTGATTACA
Found at i:86332090 original size:82 final size:81
Alignment explanation
Indices: 86331915--86332099 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
86331905 GCGGGATTAA
* * *
86331915 ATTGTACAGCACTAAGTGTGCGATTCAACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
*
86331980 CTAAGTGTGCGAATTG
66 CGAAGTGTGCGAATTG
*** * * ** *
86331996 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
86332060 CACGAAGTGTGCGAGTTG
64 CACGAAGTGTGCGAATTG
* *
86332078 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
86332100 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CGAAGTGTGCGAATTG
Found at i:86340000 original size:27 final size:26
Alignment explanation
Indices: 86339970--86340121 Score: 135
Period size: 27 Copynumber: 5.6 Consensus size: 26
86339960 TGTACAGCAT
*
86339970 TAAGTGTGCGATTCGACTATGTTGCAC
1 TAAGTGTGCGATT-GACTATGTGGCAC
* *
86339997 TAAGTGTGCGAAATGAATATGAT-GCAC
1 TAAGTGTGCG-ATTGACTATG-TGGCAC
* *
86340024 TAAGTGTGCGAATTGACCATGCGGCAC
1 TAAGTGTGCG-ATTGACTATGTGGCAC
* *
86340051 TAAGTGTGCGAGTCTAACTATGTAGCAC
1 TAAGTGTGCGA-T-TGACTATGTGGCAC
* *
86340079 TAAGTGTGCGATTTGATTACGTGGCAC
1 TAAGTGTGCGA-TTGACTATGTGGCAC
*
86340106 GAAGTGTGCGAGTTGA
1 TAAGTGTGCGA-TTGA
86340122 TTGTATAGCA
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.01
27 77 0.75
28 25 0.24
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (26 bp):
TAAGTGTGCGATTGACTATGTGGCAC
Found at i:86340089 original size:55 final size:52
Alignment explanation
Indices: 86339965--86340118 Score: 157
Period size: 55 Copynumber: 2.9 Consensus size: 52
86339955 TAAATTGTAC
* * *
86339965 AGCATTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
86340018 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * * *
86340073 TAGCACTAAGTGTGCGATTTGATTACGTGGCACGAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
86340119 TGATTGTATA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
53 3 0.04
54 35 0.42
55 45 0.54
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:86340111 original size:82 final size:81
Alignment explanation
Indices: 86339970--86340121 Score: 198
Period size: 82 Copynumber: 1.9 Consensus size: 81
86339960 TGTACAGCAT
* * * * *
86339970 TAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGA
1 TAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACGAAGTGTGCGA
86340035 ATTGACCATGCGGCAC
66 ATTGACCATGCGGCAC
** *
86340051 TAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACGAAGTGTGC
1 TAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACGAAGTGTGC
*
86340115 GAGTTGA
64 GAATTGA
86340122 TTGTATAGCA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
81 14 0.23
82 46 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACGAAGTGTGCGA
ATTGACCATGCGGCAC
Found at i:86340132 original size:27 final size:27
Alignment explanation
Indices: 86340073--86340142 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
86340063 TCTAACTATG
* * *
86340073 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACGAAGTGTGCGAGTTGATTACA
* **
86340100 TGGCACGAAGTGTGCGAGTTGATTGTA
1 TAGCACGAAGTGTGCGAGTTGATTACA
86340127 TAGCACTG-AGTGTGCG
1 TAGCAC-GAAGTGTGCG
86340143 GGCTCAATAT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.30
Consensus pattern (27 bp):
TAGCACGAAGTGTGCGAGTTGATTACA
Done.