Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 263 of 356
Found at i:86340133 original size:82 final size:81
Alignment explanation
Indices: 86339958--86340142 Score: 192
Period size: 82 Copynumber: 2.3 Consensus size: 81
86339948 GCGGGATTAA
* * * * *
86339958 ATTGTACAGCATTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
*
86340023 CTAAGTGTGCGAATTG
66 CGAAGTGTGCGAATTG
*** * * ** *
86340039 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
86340103 CACGAAGTGTGCGAGTTG
64 CACGAAGTGTGCGAATTG
* *
86340121 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
86340143 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 22, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
81 20 0.25
82 60 0.75
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CGAAGTGTGCGAATTG
Found at i:86342411 original size:42 final size:42
Alignment explanation
Indices: 86342343--86342462 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 42
86342333 CTCGCAGTAC
* *
86342343 CATACCAATGCCATATCCCAGATATGGTCTTACATGTAA-TCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACG-AAGTCT
* * *
86342385 CATATCGATGCCA-ATAGCCAGCTATGGTCTTACACGAAGTCT
1 CATATCAATGCCATAT-CCCAGATATGGTCTTACACGAAGTCT
86342427 CATATCAATGCCATATCCCAGATATGGTCTTACACG
1 CATATCAATGCCATATCCCAGATATGGTCTTACACG
86342463 TCATCTTAGT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 4 0.06
42 61 0.91
43 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAGTCT
Found at i:86342600 original size:22 final size:22
Alignment explanation
Indices: 86342572--86342622 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
86342562 AGTGTCGTAC
*
86342572 TCAATAACATTCATATTTTATT
1 TCAATAACATTCACATTTTATT
86342594 TCAATAACATTCACATTTTATT
1 TCAATAACATTCACATTTTATT
86342616 TCAATAA
1 TCAATAA
86342623 TATAGAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (22 bp):
TCAATAACATTCACATTTTATT
Found at i:86343280 original size:40 final size:40
Alignment explanation
Indices: 86343229--86343313 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
86343219 CGTTTATGAA
* *
86343229 AAAAATGCCACTATAGATCGATCATTAGCTG-CACTTTTTG
1 AAAAACGCCACTATAGATCGAGCATTAGC-GACACTTTTTG
86343269 AAAAACGCCACTATAGATCGAGCATTAGCGACACTTTTTG
1 AAAAACGCCACTATAGATCGAGCATTAGCGACACTTTTTG
86343309 AAAAA
1 AAAAA
86343314 TGTGGCAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 1 0.02
40 41 0.98
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (40 bp):
AAAAACGCCACTATAGATCGAGCATTAGCGACACTTTTTG
Found at i:86345761 original size:43 final size:43
Alignment explanation
Indices: 86345697--86345787 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
86345687 CTTTGAGTTC
* * * * *
86345697 ATTA-CAAGATTTCCTTGATTAAGTACATGTATTATATCTTTT
1 ATTACCAAGATTTACTTAATTAAGAAAATGCATTATATCTTTT
* *
86345739 ATTACCAAGATTTACTTAATTAAGAAAATGCATTGTATGTTTT
1 ATTACCAAGATTTACTTAATTAAGAAAATGCATTATATCTTTT
86345782 ATTACC
1 ATTACC
86345788 TTGCAATGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 4 0.10
43 37 0.90
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTAATTAAGAAAATGCATTATATCTTTT
Found at i:86346007 original size:15 final size:15
Alignment explanation
Indices: 86345987--86346017 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86345977 TTAGTCAAAG
86345987 GAATATTCATTAGCA
1 GAATATTCATTAGCA
86346002 GAATATTCATTAGCA
1 GAATATTCATTAGCA
86346017 G
1 G
86346018 CTTAATCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (15 bp):
GAATATTCATTAGCA
Found at i:86346516 original size:43 final size:43
Alignment explanation
Indices: 86346468--86346650 Score: 138
Period size: 43 Copynumber: 4.3 Consensus size: 43
86346458 ATAATTTTTT
* *
86346468 TAAAGGTTATGTTCTTTAACGGCATTTGTGGGAAAAACGCCAC
1 TAAAGGTCATGTTCTTTAACGGCGTTTGTGGGAAAAACGCCAC
** *
86346511 TAAAGGTCATGTT-TTATAGA-GGCGTTTGTGGGAAAAGTGCCGC
1 TAAAGGTCATGTTCTT-TA-ACGGCGTTTGTGGGAAAAACGCCAC
* * * ** **
86346554 TAAAGGTCATGTTCTATAGCGACGTTTGTGGG-AAAGTGCTGC
1 TAAAGGTCATGTTCTTTAACGGCGTTTGTGGGAAAAACGCCAC
* * * ** ** *
86346596 TAAAGCTCATGTCCTATAGTGGCGTTTGTGGGAAAAGTGCCGC
1 TAAAGGTCATGTTCTTTAACGGCGTTTGTGGGAAAAACGCCAC
*
86346639 TAAAGCTCATGT
1 TAAAGGTCATGT
86346651 CCTATAGCAG
Statistics
Matches: 121, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
42 39 0.32
43 80 0.66
44 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAACGGCGTTTGTGGGAAAAACGCCAC
Found at i:86346606 original size:42 final size:43
Alignment explanation
Indices: 86346487--86346665 Score: 225
Period size: 43 Copynumber: 4.2 Consensus size: 43
86346477 TGTTCTTTAA
* ** * * **
86346487 CGGCATTTGTGGGAAAAACGCCACTAAAGGTCATGTTTTATAG
1 CGGCGTTTGTGGGAAAAGTGCCGCTAAAGCTCATGTCCTATAG
* * *
86346530 AGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCATGTTCTATAG
1 CGGCGTTTGTGGGAAAAGTGCCGCTAAAGCTCATGTCCTATAG
* *
86346573 CGACGTTTGTGGG-AAAGTGCTGCTAAAGCTCATGTCCTATAG
1 CGGCGTTTGTGGGAAAAGTGCCGCTAAAGCTCATGTCCTATAG
*
86346615 TGGCGTTTGTGGGAAAAGTGCCGCTAAAGCTCATGTCCTATAG
1 CGGCGTTTGTGGGAAAAGTGCCGCTAAAGCTCATGTCCTATAG
*
86346658 CAGCGTTT
1 CGGCGTTT
86346666 TTCCACATAA
Statistics
Matches: 119, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 37 0.31
43 82 0.69
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (43 bp):
CGGCGTTTGTGGGAAAAGTGCCGCTAAAGCTCATGTCCTATAG
Found at i:86346834 original size:43 final size:43
Alignment explanation
Indices: 86346749--86346938 Score: 260
Period size: 43 Copynumber: 4.5 Consensus size: 43
86346739 CAAATCGCCT
* *
86346749 CTAAAGGTCATGTTCTATAGCA--CGTTTTTGGGAAAAGCGCCG
1 CTAAAGGTCATGTTCTATAG-AGGCGTTTGTGGGAAAAGTGCCG
*
86346791 CTAAAGGTCATGTTTTATAGAGGCGTTTGTGGGAAAAGTGCCG
1 CTAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAGTGCCG
* *
86346834 CTAAAGGTCATGTTCTATAGCGGCGTTTGTGGG-AAAGTGCTG
1 CTAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAGTGCCG
* * *
86346876 CTAAAGCTCATGTCCTATAGTGGCGTTTGTGGGAAAAGTGCCG
1 CTAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAGTGCCG
* *
86346919 CTAAAGCTCATGTCCTATAG
1 CTAAAGGTCATGTTCTATAG
86346939 CAGCATTTTT
Statistics
Matches: 135, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
41 1 0.01
42 57 0.42
43 77 0.57
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
CTAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAGTGCCG
Found at i:86346895 original size:85 final size:85
Alignment explanation
Indices: 86346749--86346940 Score: 278
Period size: 85 Copynumber: 2.3 Consensus size: 85
86346739 CAAATCGCCT
* * **
86346749 CTAAAGGTCATGTTCTATAGCACGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTTTATAGAGG
1 CTAAAGGTCATGTTCTATAGCACGTTTGTGGGAAAAGCGCCGCTAAAGCTCATGTCCTATAGAGG
86346814 CGTTTGTGGGAAAAGTGCCG
66 CGTTTGTGGGAAAAGTGCCG
* * * *
86346834 CTAAAGGTCATGTTCTATAGCGGCGTTTGTGGG-AAAGTGCTGCTAAAGCTCATGTCCTATAGTG
1 CTAAAGGTCATGTTCTATAGC-ACGTTTGTGGGAAAAGCGCCGCTAAAGCTCATGTCCTATAGAG
86346898 GCGTTTGTGGGAAAAGTGCCG
65 GCGTTTGTGGGAAAAGTGCCG
* *
86346919 CTAAAGCTCATGTCCTATAGCA
1 CTAAAGGTCATGTTCTATAGCA
86346941 GCATTTTTCC
Statistics
Matches: 95, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
85 86 0.91
86 9 0.09
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (85 bp):
CTAAAGGTCATGTTCTATAGCACGTTTGTGGGAAAAGCGCCGCTAAAGCTCATGTCCTATAGAGG
CGTTTGTGGGAAAAGTGCCG
Found at i:86350133 original size:21 final size:22
Alignment explanation
Indices: 86350094--86350134 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
86350084 ATTTATCTTA
*
86350094 AACTTAAAATTTTACAAATATT
1 AACTTAAAATTTGACAAATATT
*
86350116 AACTT-AAATTTGATAAATA
1 AACTTAAAATTTGACAAATA
86350135 AAATTGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.39
Consensus pattern (22 bp):
AACTTAAAATTTGACAAATATT
Found at i:86372337 original size:14 final size:14
Alignment explanation
Indices: 86372318--86372348 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
86372308 CAAAAATTAC
86372318 TTAGATTTTCCAAA
1 TTAGATTTTCCAAA
86372332 TTAGATTTTCCAAA
1 TTAGATTTTCCAAA
86372346 TTA
1 TTA
86372349 ATTCTACAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (14 bp):
TTAGATTTTCCAAA
Found at i:86378566 original size:28 final size:29
Alignment explanation
Indices: 86378530--86378630 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
86378520 TATGGTAAGT
* * *
86378530 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
* *
86378558 TCGTACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
86378587 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
86378616 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
86378631 CAATTTCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 18 0.28
29 46 0.72
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:86394160 original size:15 final size:15
Alignment explanation
Indices: 86394139--86394179 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
86394129 AATACAGAGG
86394139 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
* * *
86394154 TATCCAAGGTACAGA
1 AATCCAAGATAAAGA
86394169 AATCCAAGATA
1 AATCCAAGATA
86394180 CCATGTCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:86399080 original size:56 final size:56
Alignment explanation
Indices: 86399013--86399124 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
86399003 GATAAGGGGT
*
86399013 TTTTGAAAGTGTCTCCATGGAAAAAGGTTTTGAGATTTGGTGGGAAAGGCAAATTA
1 TTTTGAAAGTGTCTCCATGGAAAAAGGTTTTGAGATTTGGTAGGAAAGGCAAATTA
86399069 TTTTGAAAGTGTCTCCATGGAAAAAGGTTTTGAGATTTGGTAGGAAAGGCAAATTA
1 TTTTGAAAGTGTCTCCATGGAAAAAGGTTTTGAGATTTGGTAGGAAAGGCAAATTA
86399125 AGTCCATGCT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (56 bp):
TTTTGAAAGTGTCTCCATGGAAAAAGGTTTTGAGATTTGGTAGGAAAGGCAAATTA
Found at i:86401668 original size:40 final size:40
Alignment explanation
Indices: 86401613--86401747 Score: 243
Period size: 40 Copynumber: 3.4 Consensus size: 40
86401603 TATGTGCATA
86401613 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
86401653 GCATTCGTCCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
86401693 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
86401733 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
86401748 GTTACATCCG
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:86401771 original size:40 final size:40
Alignment explanation
Indices: 86401613--86401771 Score: 147
Period size: 40 Copynumber: 4.0 Consensus size: 40
86401603 TATGTGCATA
* * ** *
86401613 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAG
* * * ** *
86401653 GCATTCGTCCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAG
* ** *
86401693 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAG
* * * *
86401733 GCATTCGTGCTGGTTGTTACATCCGAGCCAAATTCCGAA
1 GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAA
86401772 AGTATTTATG
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTACAACCGAGCCAAATCCCGAAG
Found at i:86401771 original size:80 final size:80
Alignment explanation
Indices: 86401613--86401771 Score: 219
Period size: 80 Copynumber: 2.0 Consensus size: 80
86401603 TATGTGCATA
* *
86401613 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTCCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCGAAGGCATTCGTCCGGGTTATTACAACCG
* ** *
86401678 GGTTAAGTCCCGAAG
66 AGCCAAATCCCGAAG
* * * *
86401693 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTACATCCG
1 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCGAAGGCATTCGTCCGGGTTATTACAACCG
*
86401758 AGCCAAATTCCGAA
66 AGCCAAATCCCGAA
86401772 AGTATTTATG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCGAAGGCATTCGTCCGGGTTATTACAACCG
AGCCAAATCCCGAAG
Found at i:86416082 original size:40 final size:40
Alignment explanation
Indices: 86416027--86416163 Score: 190
Period size: 40 Copynumber: 3.5 Consensus size: 40
86416017 CGGATGATAA
*
86416027 CGGGCTAATTCCCGAAGGCATTTGTACGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATC
*
86416067 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATC
* *
86416107 CGGGGTAAGTCCCGAAGGCAGTTG-AGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTA-CTATATC
*
86416147 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
86416164 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 16 0.18
40 72 0.82
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATC
Found at i:86424079 original size:39 final size:40
Alignment explanation
Indices: 86423942--86424079 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
86423932 CAGATGATAA
*
86423942 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
86423982 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
86424022 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
86424062 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
86424080 TACTTGGTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.18
40 76 0.82
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:86427215 original size:46 final size:49
Alignment explanation
Indices: 86427100--86427215 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 49
86427090 TGTCTTCGAC
** * *
86427100 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATCTAAT
* * *
86427150 ATGGGCATACATGGCTCATTCCTGTCTCCAAAGCC-ATAT-T-TCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
86427196 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
86427216 TTTGTCCTGT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 23 0.40
47 1 0.02
48 4 0.07
50 29 0.51
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:86434487 original size:42 final size:42
Alignment explanation
Indices: 86434401--86434554 Score: 213
Period size: 42 Copynumber: 3.7 Consensus size: 42
86434391 ACTAAGACTA
86434401 CGTGTAAGACCATAT-TGGGATATGGCATCG-TATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
*
86434441 CGTGTAAGACCATATCTGGGATATGGCGTCGATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* * * **
86434483 CGTGTAAGACCATAGCTGGGTTATTGACATCGATATGAGATAA
1 CGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTT
* *
86434526 CATGTAAGACCATATCTAGGATATGGCAT
1 CGTGTAAGACCATATCTGGGATATGGCAT
86434555 TGGTACAGTA
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
40 15 0.15
41 14 0.14
42 36 0.36
43 34 0.34
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
Found at i:86434573 original size:85 final size:82
Alignment explanation
Indices: 86434401--86434554 Score: 191
Period size: 85 Copynumber: 1.8 Consensus size: 82
86434391 ACTAAGACTA
* * ** * *
86434401 CGTGTAAGACCATATTGGGATATGGCATCGTATGAGATTTCGTGTAAGACCATATCTGGGATATG
1 CGTGTAAGACCATACTGGGATATGACATCGTATGAGATAACATGTAAGACCATATCTAGGATATG
* * *
86434466 GCGTCGATATGAGATTT
66 GCATCGATATCAGATGT
*
86434483 CGTGTAAGACCATAGCTGGGTTATTGACATCGATATGAGATAACATGTAAGACCATATCTAGGAT
1 CGTGTAAGACCATA-CTGGGATA-TGACATCG-TATGAGATAACATGTAAGACCATATCTAGGAT
86434548 ATGGCAT
63 ATGGCAT
86434555 TGGTACAGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
82 14 0.23
83 6 0.10
84 7 0.11
85 34 0.56
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (82 bp):
CGTGTAAGACCATACTGGGATATGACATCGTATGAGATAACATGTAAGACCATATCTAGGATATG
GCATCGATATCAGATGT
Found at i:86434805 original size:43 final size:43
Alignment explanation
Indices: 86434744--86434831 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
86434734 TCAGTTGGCG
*
86434744 ATTGTGTAATTGGTTTTCGGGCCAAATTGAGTTGTGATATAAC
1 ATTGTGTAATTGGTTTTCGGGCCAAATTGAGTTATGATATAAC
86434787 ATTGTGTAATTGGTTTTCGGGCCAAATTGAGTTATGATATAAC
1 ATTGTGTAATTGGTTTTCGGGCCAAATTGAGTTATGATATAAC
86434830 AT
1 AT
86434832 GTTTTATTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (43 bp):
ATTGTGTAATTGGTTTTCGGGCCAAATTGAGTTATGATATAAC
Found at i:86436614 original size:46 final size:46
Alignment explanation
Indices: 86436556--86436831 Score: 435
Period size: 46 Copynumber: 6.0 Consensus size: 46
86436546 TTTCTGTCAT
* ** * * *
86436556 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
* ** * *
86436602 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCAATTCATATCAC
1 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
86436648 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
86436694 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
86436740 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
* *
86436786 GTTGCCATGGTACCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
86436832 AGAGCACACT
Statistics
Matches: 220, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 220 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
Found at i:86438967 original size:17 final size:17
Alignment explanation
Indices: 86438945--86438982 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
86438935 CTTTCCCCTG
86438945 TTTCGTCTCATTCTCTC
1 TTTCGTCTCATTCTCTC
*
86438962 TTTCGTCTCATTCTCTG
1 TTTCGTCTCATTCTCTC
86438979 TTTC
1 TTTC
86438983 CTTTCTTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.32, G:0.08, T:0.55
Consensus pattern (17 bp):
TTTCGTCTCATTCTCTC
Found at i:86445212 original size:16 final size:16
Alignment explanation
Indices: 86445191--86445222 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
86445181 TGTGTAACGC
86445191 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
86445207 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
86445223 TCCTAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:86446317 original size:16 final size:16
Alignment explanation
Indices: 86446296--86446332 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
86446286 ATGTATTGGC
*
86446296 AAAAGCCGAAATACCG
1 AAAAGCCGAAATACCA
86446312 AAAAGCCGAAATACCA
1 AAAAGCCGAAATACCA
86446328 AAAAG
1 AAAAG
86446333 TCAAAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.57, C:0.22, G:0.16, T:0.05
Consensus pattern (16 bp):
AAAAGCCGAAATACCA
Found at i:86446480 original size:18 final size:19
Alignment explanation
Indices: 86446447--86446482 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
86446437 ATTTGGCCAT
86446447 ATGGGCCAGAATGGGCTAA
1 ATGGGCCAGAATGGGCTAA
*
86446466 ATGGGCCTG-ATGGGCTA
1 ATGGGCCAGAATGGGCTA
86446483 TTGGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.17, G:0.39, T:0.19
Consensus pattern (19 bp):
ATGGGCCAGAATGGGCTAA
Found at i:86446604 original size:29 final size:29
Alignment explanation
Indices: 86446567--86446638 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
86446557 GTGACTAGGT
* *
86446567 CTAACGGGCTATATA-AATGTGATTTGGGC
1 CTAATGGGCCATATACAA-GTGATTTGGGC
86446596 CTAATGGGCCATATACAAGTGATTTGGGC
1 CTAATGGGCCATATACAAGTGATTTGGGC
86446625 CTAATGGGCCATAT
1 CTAATGGGCCATAT
86446639 GAATACGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
29 38 0.95
30 2 0.05
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (29 bp):
CTAATGGGCCATATACAAGTGATTTGGGC
Found at i:86446978 original size:26 final size:26
Alignment explanation
Indices: 86446949--86446998 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
86446939 CTGTAATTAT
* * *
86446949 GGAAAAATTACCGAAATGCCCCTAAG
1 GGAAAAATGACCAAAATACCCCTAAG
86446975 GGAAAAATGACCAAAATACCCCTA
1 GGAAAAATGACCAAAATACCCCTA
86446999 GGTGTAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.16, T:0.14
Consensus pattern (26 bp):
GGAAAAATGACCAAAATACCCCTAAG
Found at i:86456871 original size:55 final size:55
Alignment explanation
Indices: 86456808--86456917 Score: 159
Period size: 55 Copynumber: 2.0 Consensus size: 55
86456798 TATCCCAAAT
* * *
86456808 ATGGTCTTACATGTTA-TCACATATCGATGCCACTGTCCCAGACAGGGTCTTACAC
1 ATGGTCTTACATGTAATTCA-ATAACGATGCCAATGTCCCAGACAGGGTCTTACAC
* *
86456863 ATGGTCTTACATGTAATTGAATAACGATGCCAATGTCCCAGACATGGTCTTACAC
1 ATGGTCTTACATGTAATTCAATAACGATGCCAATGTCCCAGACAGGGTCTTACAC
86456918 GTAATCACAT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 47 0.96
56 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (55 bp):
ATGGTCTTACATGTAATTCAATAACGATGCCAATGTCCCAGACAGGGTCTTACAC
Found at i:86465861 original size:13 final size:13
Alignment explanation
Indices: 86465845--86465871 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86465835 ATCCCACCCC
86465845 AAAATAGATACAG
1 AAAATAGATACAG
86465858 AAAATAGATACAG
1 AAAATAGATACAG
86465871 A
1 A
86465872 TACAGATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATAGATACAG
Found at i:86468088 original size:27 final size:27
Alignment explanation
Indices: 86468054--86468221 Score: 158
Period size: 27 Copynumber: 6.2 Consensus size: 27
86468044 AGGGAAAATT
86468054 AGTCATTTTACCTTACAGGGGTATTAC
1 AGTCATTTTACCTTACAGGGGTATTAC
* * * *
86468081 AGTGATTTTACCCTATAAGGGTATTAC
1 AGTCATTTTACCTTACAGGGGTATTAC
* * *
86468108 AGTTATTTTACCATACAGGGGCATTAC
1 AGTCATTTTACCTTACAGGGGTATTAC
* *
86468135 AGTCATTTTACCTTATAGGGGTATTTC
1 AGTCATTTTACCTTACAGGGGTATTAC
* ** *
86468162 -GATCATTTTACCCTATGGGGGTATTTC
1 AG-TCATTTTACCTTACAGGGGTATTAC
* * ** *
86468189 GGTCATTTTACCCTGTAGGGGTATTTC
1 AGTCATTTTACCTTACAGGGGTATTAC
86468216 AGTCAT
1 AGTCAT
86468222 CATTTAAGCC
Statistics
Matches: 120, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 118 0.98
28 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACCTTACAGGGGTATTAC
Found at i:86468125 original size:54 final size:54
Alignment explanation
Indices: 86468054--86468221 Score: 203
Period size: 54 Copynumber: 3.1 Consensus size: 54
86468044 AGGGAAAATT
* * * *
86468054 AGTCATTTTACCTTACAGGGGTATTACAGTGATTTTACCCTATAAGGGTATTAC
1 AGTCATTTTACCATACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTC
* * *
86468108 AGTTATTTTACCATACAGGGGCATTACAGTCATTTTACCTTATAGGGGTATTTC
1 AGTCATTTTACCATACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTC
* ** * * *
86468162 -GATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTGTAGGGGTATTTC
1 AG-TCATTTTACCATACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTC
86468216 AGTCAT
1 AGTCAT
86468222 CATTTAAGCC
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 94 0.98
55 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (54 bp):
AGTCATTTTACCATACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTC
Found at i:86478760 original size:48 final size:46
Alignment explanation
Indices: 86478646--86478880 Score: 236
Period size: 48 Copynumber: 4.9 Consensus size: 46
86478636 GGCAAGATGC
* * * *
86478646 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATA--AG-G
*
86478695 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGG
1 -CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT-AAGG
* *
86478743 ACGATGCCATGTCCCAAACATGGTCATACACTAGCTCACATAATGAGG
1 -CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-ATAAGG
* * *
86478791 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGT
1 C-GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT-AA-GG
* * * * * *
86478840 CGATGTCATGTTCAAAATATGGTCTTATACTGGCTCACATA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
86478881 ACCCTAGTAT
Statistics
Matches: 158, Mismatches: 22, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
47 3 0.02
48 111 0.70
49 5 0.03
50 38 0.24
51 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (46 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAGG
Found at i:86478826 original size:96 final size:97
Alignment explanation
Indices: 86478646--86478881 Score: 296
Period size: 96 Copynumber: 2.4 Consensus size: 97
86478636 GGCAAGATGC
* * *
86478646 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCCGATGCCATGTTCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA-ATCGGTGCCGATGCCATGTCCCA
*
86478711 AACATGGTCTTACACTAGCTCACATATCAAGGA
65 AACATGGTCTTACACTAGCTCACATATAAAGGA
* * *
86478744 CGATGCCATGTCCCAAACATGGTCATACACTAGCTCACATAAT-GAG-GCTGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATCG-GTGCCGATGCCATGTCCCA
* * * *
86478807 GACATGGTCTTACACTAGCTCTCATATAAATGT
65 AACATGGTCTTACACTAGCTCACATATAAAGGA
* * * * *
86478840 CGATGTCATGTTCAAAATATGGTCTTATACTGGCTCACATAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAA
86478882 CCCTAGTATC
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
96 79 0.66
97 3 0.03
98 37 0.31
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (97 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATCGGTGCCGATGCCATGTCCCAA
ACATGGTCTTACACTAGCTCACATATAAAGGA
Found at i:86479626 original size:35 final size:35
Alignment explanation
Indices: 86479577--86479647 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
86479567 GTACAAAAAA
*
86479577 ATCATCAAGAAAGACCATAAAAATCTCTTACTTGC
1 ATCATCAAGAAAGACCATAAAAATCACTTACTTGC
* *
86479612 ATCATCAAGGAAGACCATCAAAATCACTTACTTGC
1 ATCATCAAGAAAGACCATAAAAATCACTTACTTGC
86479647 A
1 A
86479648 AGAGTCTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.42, C:0.24, G:0.10, T:0.24
Consensus pattern (35 bp):
ATCATCAAGAAAGACCATAAAAATCACTTACTTGC
Found at i:86482033 original size:137 final size:139
Alignment explanation
Indices: 86481846--86482104 Score: 321
Period size: 137 Copynumber: 1.9 Consensus size: 139
86481836 TAATTAAAAA
* ** *
86481846 AAGCTTGAAAAACATGAAATAAAAAATGCAAATGTGCTTAGAAAATGAATCAAACTTGAGACTC-
1 AAGCTTGAAAAACATGAAATAAAAAATACAAATGTGAGTAGAAAATGAATCAAACTAGAGACTCA
* * ** **
86481910 AAGAATAAAATCACTATTAATTAACCATCTAAGTAAAGAAGCTAACATGTTAAAAAAAGTTATAT
66 AAG-ACAAAACCACTAACAATTAACCATCTAAACAAAGAAGCTAACATGTTAAAAAAAGTTATAT
86481975 AAAAAAAATT
130 AAAAAAAATT
* *
86481985 AAGCTTGAAACAA-ATGGAATAAAAAA-ACAAATGTGAGTA-AAAGA-GAATCAAACTAGAGATT
1 AAGCTTGAAA-AACATGAAATAAAAAATACAAATGTGAGTAGAAA-ATGAATCAAACTAGAGACT
* **
86482046 CAAAGACAAAACCACTAACATTTAACCATCTAAACAAAGAAGCTAATGTGTTAAAAAAA
64 CAAAGACAAAACCACTAACAATTAACCATCTAAACAAAGAAGCTAACATGTTAAAAAAA
86482105 TCAAAAAGTG
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
137 64 0.63
138 14 0.14
139 22 0.22
140 2 0.02
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.22
Consensus pattern (139 bp):
AAGCTTGAAAAACATGAAATAAAAAATACAAATGTGAGTAGAAAATGAATCAAACTAGAGACTCA
AAGACAAAACCACTAACAATTAACCATCTAAACAAAGAAGCTAACATGTTAAAAAAAGTTATATA
AAAAAAATT
Found at i:86486089 original size:46 final size:46
Alignment explanation
Indices: 86485945--86486352 Score: 162
Period size: 47 Copynumber: 8.7 Consensus size: 46
86485935 TTTGTGTGCT
* * * *
86485945 AGTGTAAGA-CATGTCTAGGACATGCACCGAACAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCG-ACTCGA-GATGTA-AGCC
* * * * *
86485991 AGTGTAAGACCATGTCTAGGACATGGCATCAGAATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-GACTCGAGATGTA-AGCC
*
86486039 AGTGTAAGA-CATATCTGGGACATGCATCGACCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGA-CTCGAGATGTAAGCC
* * *
86486085 AGTGTAAGA-CATGTCTGGAACATGTATC-AGCTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGA-CT-CGAGATGTAAGCC
* * ** * *
86486129 AGTGTAAGACCATGTCTGGGAAATAGCATTGGCACGTATAGAGGT--G-T
1 AGTGTAAGACCATGTCTGGGACAT-GCA-TCG-AC-TCGAGATGTAAGCC
* * * *
86486176 TGTGTAAGACCATGTCTGGGACATGGCATCGACACGAATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACTCG-AGATGT-A-AGCC
* * * ** **
86486226 AATGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCG-ATAGTT
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-GACTCGAGAT-GTA-AGCC
* * *
86486275 AGTGTAAGACCATGTTTGGGACATGGCATTGACT--TGATGGATAAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGAT-G-TAAGCC
* * *
86486322 AGTATAAGATCATGCCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCG
86486353 GCATAATACC
Statistics
Matches: 280, Mismatches: 59, Indels: 45
0.73 0.15 0.12
Matches are distributed among these distances:
44 11 0.04
45 23 0.08
46 62 0.22
47 81 0.29
48 32 0.11
49 35 0.12
50 31 0.11
51 5 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGTAAGCC
Found at i:86487554 original size:20 final size:21
Alignment explanation
Indices: 86487499--86487555 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
86487489 ATGTTCAAGT
*
86487499 TCCACAC-AGGCGTGTTGCCTA
1 TCCACACGA-GCGTGTTGCCCA
* *
86487520 TCCATACGGGCGTGTTGCCCA
1 TCCACACGAGCGTGTTGCCCA
86487541 -CCACACGAGCGTGTT
1 TCCACACGAGCGTGTT
86487556 CCCTGTTTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.18, C:0.33, G:0.26, T:0.23
Consensus pattern (21 bp):
TCCACACGAGCGTGTTGCCCA
Found at i:86490341 original size:30 final size:30
Alignment explanation
Indices: 86490285--86490343 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
86490275 GTTTTCAAGT
* *
86490285 AAGCTCCCTATGTGAGCTCTTGTGATAAGC
1 AAGCTCCCTATGTAAGCTCTTATGATAAGC
*
86490315 AAGCT-CCTATGTAAGCTTTCTATGATAAG
1 AAGCTCCCTATGTAAGCTCT-TATGATAAG
86490344 TCTATGTGCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (30 bp):
AAGCTCCCTATGTAAGCTCTTATGATAAGC
Found at i:86492744 original size:12 final size:12
Alignment explanation
Indices: 86492727--86492751 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86492717 ACTCATGTTA
86492727 ATTGTATTTTGC
1 ATTGTATTTTGC
86492739 ATTGTATTTTGC
1 ATTGTATTTTGC
86492751 A
1 A
86492752 ATCATTCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (12 bp):
ATTGTATTTTGC
Found at i:86498479 original size:62 final size:62
Alignment explanation
Indices: 86498408--86498539 Score: 264
Period size: 62 Copynumber: 2.1 Consensus size: 62
86498398 GAAAGCTTGA
86498408 TGATTTTTGTCTTTGATGATGAAAAAGAAGTATGTGTTAATAGATTTTCATGTTTAATTAAG
1 TGATTTTTGTCTTTGATGATGAAAAAGAAGTATGTGTTAATAGATTTTCATGTTTAATTAAG
86498470 TGATTTTTGTCTTTGATGATGAAAAAGAAGTATGTGTTAATAGATTTTCATGTTTAATTAAG
1 TGATTTTTGTCTTTGATGATGAAAAAGAAGTATGTGTTAATAGATTTTCATGTTTAATTAAG
86498532 TGATTTTT
1 TGATTTTT
86498540 AGTAAAAATG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (62 bp):
TGATTTTTGTCTTTGATGATGAAAAAGAAGTATGTGTTAATAGATTTTCATGTTTAATTAAG
Found at i:86499163 original size:44 final size:42
Alignment explanation
Indices: 86499098--86499264 Score: 160
Period size: 42 Copynumber: 3.9 Consensus size: 42
86499088 TAGGATTCTG
*
86499098 ATATGTGATTTCATGTAAGACCACGTTTGGGACGTTGGCATC
1 ATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
* * * * *
86499140 AATTTGTGATTTACATGTAAGACCATGTTTGGGACATTAGCATC
1 -ATATGTGATTT-CATGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
86499184 ATATATGAGTTCGTGTAAGACC-CTGTCTGGGATAG-TGG-ATC
1 ATATGTGATTTCATGTAAGACCAC-GTCTGGGA-CGTTGGCATC
* *
86499225 GATATGTGATTACATGTAAGACCACGTCTGAGACGTTGGC
1 -ATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGC
86499265 GTTGTACGAG
Statistics
Matches: 98, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
41 4 0.04
42 47 0.48
43 19 0.19
44 28 0.29
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
ATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:86506690 original size:35 final size:36
Alignment explanation
Indices: 86506651--86506772 Score: 126
Period size: 36 Copynumber: 3.4 Consensus size: 36
86506641 CCTAGCTATA
86506651 TGCTGGAATTATATTGGGTTAAATCCCGCAGCTTC-
1 TGCTGGAATTATATTGGGTTAAATCCCGCAGCTTCG
*
86506686 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGCTTCG
1 TGCTGG-AATTATAT-TGGGTTAAATCCCGCAGCTTCG
* * * *
86506723 TGCT-GTATTATA-TCGGTTAAAGTCCCGCAGGCCTAG
1 TGCTGGAATTATATTGGGTTAAA-TCCCGCA-GCTTCG
*
86506759 TGCTGGTATTATAT
1 TGCTGGAATTATAT
86506773 CTGAACTTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
34 7 0.10
35 19 0.26
36 35 0.48
37 12 0.16
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (36 bp):
TGCTGGAATTATATTGGGTTAAATCCCGCAGCTTCG
Found at i:86506712 original size:36 final size:35
Alignment explanation
Indices: 86506651--86506752 Score: 127
Period size: 36 Copynumber: 2.9 Consensus size: 35
86506641 CCTAGCTATA
* *
86506651 TGCTGGAATTATATTGGGTTAAATCCCGCAGCTTC-
1 TGCTGTAA-TATATCGGGTTAAATCCCGCAGCTTCG
86506686 TGCTGGTAATATATCCGGGTTAAATCCCGCAGCTTCG
1 TGCT-GTAATATAT-CGGGTTAAATCCCGCAGCTTCG
*
86506723 TGCTGTATTATATC-GGTTAAAGTCCCGCAG
1 TGCTGTAATATATCGGGTTAAA-TCCCGCAG
86506753 GCCTAGTGCT
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
34 7 0.12
35 18 0.30
36 31 0.52
37 4 0.07
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.32
Consensus pattern (35 bp):
TGCTGTAATATATCGGGTTAAATCCCGCAGCTTCG
Found at i:86513794 original size:31 final size:31
Alignment explanation
Indices: 86513751--86513815 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
86513741 GCAGCTATAT
86513751 GCTGGAATTATATCCGGGTTAAATCCCGCAA
1 GCTGGAATTATATCCGGGTTAAATCCCGCAA
*
86513782 GCTGGTAA-TATATCCGGGTTAAATCCTGCAA
1 GCTGG-AATTATATCCGGGTTAAATCCCGCAA
86513813 GCT
1 GCT
86513816 TCGTGTAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 30 0.94
32 2 0.06
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (31 bp):
GCTGGAATTATATCCGGGTTAAATCCCGCAA
Found at i:86514868 original size:19 final size:20
Alignment explanation
Indices: 86514844--86514881 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
86514834 GGTACCACCA
86514844 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
86514863 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
86514882 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:86515270 original size:93 final size:93
Alignment explanation
Indices: 86515111--86515281 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
86515101 GCCCCTAAGT
* * *
86515111 GAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAGCATTCGCATCCATAAATGAACTCAGACTCAACTCAA
86515176 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
86515204 GAACTCGGACTCAACTCAACAAGTTCG-GACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCGAG-CATTCGCATCCATAAATGAACTCAGACTCAACTCA
86515268 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
86515282 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGAGCATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86515277 original size:46 final size:47
Alignment explanation
Indices: 86515106--86515278 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 47
86515096 AACCCGCCCC
* * *
86515106 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
* * *
86515152 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-ATTTGCATCCA
* * *
86515200 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGA-CATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
*
86515245 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86515279 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.53
47 30 0.29
48 3 0.03
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
Found at i:86527816 original size:19 final size:19
Alignment explanation
Indices: 86527792--86527836 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
86527782 TTAAATTTAA
*
86527792 TTTAATT-TTATATTAATTT
1 TTTAATTATT-TATTAACTT
86527811 TTTAATTATTTATTAACTT
1 TTTAATTATTTATTAACTT
*
86527830 ATTAATT
1 TTTAATT
86527837 GATTCATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 21 0.91
20 2 0.09
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTAATTATTTATTAACTT
Found at i:86529755 original size:21 final size:21
Alignment explanation
Indices: 86529730--86529779 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
86529720 TGTAATTGAT
*
86529730 TATTTTTACA-TTATTTTTATA
1 TATTTTTA-ATTTACTTTTATA
86529751 TATTTTTTAATTTACTTTTATA
1 TA-TTTTTAATTTACTTTTATA
86529773 -ATTTTTA
1 TATTTTTA
86529780 TAATATTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 6 0.23
21 4 0.15
22 16 0.62
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (21 bp):
TATTTTTAATTTACTTTTATA
Found at i:86534343 original size:26 final size:26
Alignment explanation
Indices: 86534289--86534345 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
86534279 TCAACTCTCA
*
86534289 TTTTTAATTAAATTTGTATTAAGGGT
1 TTTTTAATTAAATTTGTATTAAGAGT
* *
86534315 TTTTTAATT-AATATTGTATTATGATT
1 TTTTTAATTAAAT-TTGTATTAAGAGT
86534341 TTTTT
1 TTTTT
86534346 GTATTTATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 3 0.11
26 24 0.89
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (26 bp):
TTTTTAATTAAATTTGTATTAAGAGT
Found at i:86535325 original size:52 final size:52
Alignment explanation
Indices: 86535244--86535347 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
86535234 ATAGTTTGAG
* *
86535244 TTATTTGAGTTATTCAGATTAACTTGAATAAAAAAATCAAACTTTTCGGTTT
1 TTATTTAAGTTATTCAGATTAACTCGAATAAAAAAATCAAACTTTTCGGTTT
86535296 TTATTTAAGTTATTCAGATTAACTCGAATAAAAAAATCAAACTTTTCGGTTT
1 TTATTTAAGTTATTCAGATTAACTCGAATAAAAAAATCAAACTTTTCGGTTT
86535348 AACTCGAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (52 bp):
TTATTTAAGTTATTCAGATTAACTCGAATAAAAAAATCAAACTTTTCGGTTT
Found at i:86535479 original size:70 final size:70
Alignment explanation
Indices: 86535405--86535572 Score: 293
Period size: 70 Copynumber: 2.4 Consensus size: 70
86535395 AAAAAAAGGT
*
86535405 AAAACTACGTCGTTTTGATAAATGTTTACCTTTTCTAAAGTTAAAAGTCAAAACC-ATTAAGTTA
1 AAAACTACGTCGTTTTGATAAATGTTTACCTTGTCTAAAGTTAAAAGTC-AAACCTATTAAGTTA
86535469 AAAGAC
65 AAAGAC
86535475 AAAACTACGTCGTTTTGATAAATGTTTACCTTGTCTAAAGTTAAAAGTCAAACCTATTAAGTTAA
1 AAAACTACGTCGTTTTGATAAATGTTTACCTTGTCTAAAGTTAAAAGTCAAACCTATTAAGTTAA
*
86535540 AAGGC
66 AAGAC
*
86535545 AAAACTACGTCATTTTGATAAATGTTTA
1 AAAACTACGTCGTTTTGATAAATGTTTA
86535573 ATCATTAAGT
Statistics
Matches: 94, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
69 5 0.05
70 89 0.95
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (70 bp):
AAAACTACGTCGTTTTGATAAATGTTTACCTTGTCTAAAGTTAAAAGTCAAACCTATTAAGTTAA
AAGAC
Found at i:86539974 original size:39 final size:39
Alignment explanation
Indices: 86539931--86540006 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
86539921 CAGACTTATT
86539931 GTTACAAAATTTTGACATAAAATAGCCATTTTCTATGTG
1 GTTACAAAATTTTGACATAAAATAGCCATTTTCTATGTG
86539970 GTTACAAAATTTTGACATAAAATAGCCATTTTCTATG
1 GTTACAAAATTTTGACATAAAATAGCCATTTTCTATG
86540007 AAAACTCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (39 bp):
GTTACAAAATTTTGACATAAAATAGCCATTTTCTATGTG
Found at i:86540264 original size:26 final size:27
Alignment explanation
Indices: 86540226--86540286 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
86540216 AAAAACTAAT
*
86540226 AGGAAAATGAAATATTACCTTAGTTGA
1 AGGAGAATGAAATATTACCTTAGTTGA
86540253 AGGAGAAT-AAATATTACCTTAGTTGA
1 AGGAGAATGAAATATTACCTTAGTTGA
86540279 AGGAGAAT
1 AGGAGAAT
86540287 CAAACATTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.79
27 7 0.21
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (27 bp):
AGGAGAATGAAATATTACCTTAGTTGA
Found at i:86540956 original size:87 final size:87
Alignment explanation
Indices: 86540855--86541027 Score: 265
Period size: 87 Copynumber: 2.0 Consensus size: 87
86540845 AAACTTCTAA
* * *
86540855 GTCAAATTATAAATAAGAAAAATATCTCTAGAAATTTACTAAAATAATTTCTTTAGAGAATTTTC
1 GTCAAATTAAAAATAAGAAAAATATCTCTAGAAATTTACTAAAATAATTTCTTCAAAGAATTTTC
86540920 TCTCTACAACTTTCTCTTGAAG
66 TCTCTACAACTTTCTCTTGAAG
* * * **
86540942 GTCAAGTTAAAAATAAGAAAAGTATTTCTAGAAATTTTTTAAAATAATTTCTTCAAAGAATTTTC
1 GTCAAATTAAAAATAAGAAAAATATCTCTAGAAATTTACTAAAATAATTTCTTCAAAGAATTTTC
*
86541007 TCTCTATAACTTTCTCTTGAA
66 TCTCTACAACTTTCTCTTGAA
86541028 TTCAAGTGTA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 77 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (87 bp):
GTCAAATTAAAAATAAGAAAAATATCTCTAGAAATTTACTAAAATAATTTCTTCAAAGAATTTTC
TCTCTACAACTTTCTCTTGAAG
Found at i:86541151 original size:32 final size:32
Alignment explanation
Indices: 86541115--86541235 Score: 84
Period size: 32 Copynumber: 3.6 Consensus size: 32
86541105 TAATCACTTG
86541115 AATATTAAATTAATATAATACTTATCAAGATA
1 AATATTAAATTAATATAATACTTATCAAGATA
* * * * *
86541147 AATATTAGATTAAATTTAATA-TTAAGACAATCACTTT
1 AATATTAAATT-AATATAATACTT-A-TCAA-GA--TA
* *
86541184 AATATTAAATTAAAAAAATAC-TATCAAGATA
1 AATATTAAATTAATATAATACTTATCAAGATA
* *
86541215 AGTATTAAATTTAATTTAATA
1 AATATTAAA-TTAATATAATA
86541236 TTAAAACTAT
Statistics
Matches: 65, Mismatches: 16, Indels: 16
0.67 0.16 0.16
Matches are distributed among these distances:
31 9 0.14
32 20 0.31
33 10 0.15
34 6 0.09
35 2 0.03
36 7 0.11
37 11 0.17
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (32 bp):
AATATTAAATTAATATAATACTTATCAAGATA
Found at i:86541237 original size:68 final size:69
Alignment explanation
Indices: 86541106--86541239 Score: 207
Period size: 68 Copynumber: 2.0 Consensus size: 69
86541096 AATTAAACTT
* * *
86541106 AATCACTTGAATATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTA
1 AATCACTTGAATATTAAATTAAAAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTA
86541171 AGAC
66 AGAC
* * *
86541175 AATCACTTTAATATTAAATTAAAAAAATAC-TATCAAGATAAGTATTAAATTTAATTTAATATTA
1 AATCACTTGAATATTAAATTAAAAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTA
86541239 A
66 A
86541240 AACTATTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
68 32 0.54
69 27 0.46
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.38
Consensus pattern (69 bp):
AATCACTTGAATATTAAATTAAAAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTA
AGAC
Found at i:86541255 original size:68 final size:69
Alignment explanation
Indices: 86541115--86541258 Score: 182
Period size: 68 Copynumber: 2.1 Consensus size: 69
86541105 TAATCACTTG
* * * *
86541115 AATATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAGACAATCA
1 AATATTAAATTAAAAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAAACAATCA
***
86541180 CTTT
66 AAAT
* * * *
86541184 AATATTAAATTAAAAAAATAC-TATCAAGATAAGTATTAAATTTAATTTAATATTAAAACTATTA
1 AATATTAAATTAAAAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAAACAATCA
86541248 AAAT
66 AAAT
86541252 AATATTA
1 AATATTA
86541259 TTTTTGAAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
68 45 0.70
69 19 0.30
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (69 bp):
AATATTAAATTAAAAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAAACAATCA
AAAT
Found at i:86548117 original size:19 final size:20
Alignment explanation
Indices: 86548095--86548132 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86548085 AAAAAAAACT
86548095 AAACTC-CAAAAACCCTTAC
1 AAACTCTCAAAAACCCTTAC
*
86548114 AAACTCTTAAAAACCCTTA
1 AAACTCTCAAAAACCCTTA
86548133 AACTCTAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (20 bp):
AAACTCTCAAAAACCCTTAC
Found at i:86548137 original size:18 final size:19
Alignment explanation
Indices: 86548102--86548138 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
86548092 ACTAAACTCC
86548102 AAAAACCCTTACAAACTCTT
1 AAAAACCCTTA-AAACTCTT
86548122 AAAAACCCTT-AAACTCT
1 AAAAACCCTTAAAACTCT
86548139 AACCCTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAACCCTTAAAACTCTT
Found at i:86549170 original size:13 final size:14
Alignment explanation
Indices: 86549139--86549171 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
86549129 AATGCTTTTG
86549139 TAAAATTATAAACA
1 TAAAATTATAAACA
*
86549153 TAAAATTA-AAATA
1 TAAAATTATAAACA
86549166 TAAAAT
1 TAAAAT
86549172 AAGATTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAATTATAAACA
Found at i:86549194 original size:6 final size:6
Alignment explanation
Indices: 86549180--86549212 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
86549170 ATAAGATTGA
*
86549180 ATAAGT ATAAAT ATAAAT ATAAAT ATAAAT ATA
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATA
86549213 TTAAATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (6 bp):
ATAAAT
Found at i:86568201 original size:295 final size:295
Alignment explanation
Indices: 86567671--86568560 Score: 1780
Period size: 295 Copynumber: 3.0 Consensus size: 295
86567661 TTCATAATAT
86567671 TTCTTCAAATGGAGAGCATTCCATGTTCGTGGTAGAATAGGGGGCCCCATTTTTGCTAGTTTGTA
1 TTCTTCAAATGGAGAGCATTCCATGTTCGTGGTAGAATAGGGGGCCCCATTTTTGCTAGTTTGTA
86567736 GGCTCCATAATCTATCTTTTCTATTACATTGTAGGGTCTTTCCTAGTTTGAAACCATCTTTCCTT
66 GGCTCCATAATCTATCTTTTCTATTACATTGTAGGGTCTTTCCTAGTTTGAAACCATCTTTCCTT
86567801 GTTGCGACGCGTGAAGGATAGATTTAGCATTCCTAAGAACAAGATCACCCACCTGAAACCACTTT
131 GTTGCGACGCGTGAAGGATAGATTTAGCATTCCTAAGAACAAGATCACCCACCTGAAACCACTTT
86567866 TTTTTAACTTTAGAATTATCATAACGAGCCACTTGTTGATTTCGTGCAATAACTTTAACTTCTAT
196 TTTTTAACTTTAGAATTATCATAACGAGCCACTTGTTGATTTCGTGCAATAACTTTAACTTCTAT
86567931 TGTTTCCCTAACTTCATCAATAAGATCCAAGTTGA
261 TGTTTCCCTAACTTCATCAATAAGATCCAAGTTGA
86567966 TTCTTCAAATGGAGAGCATTCCATGTTCGTGGTAGAATAGGGGGCCCCATTTTTGCTAGTTTGTA
1 TTCTTCAAATGGAGAGCATTCCATGTTCGTGGTAGAATAGGGGGCCCCATTTTTGCTAGTTTGTA
86568031 GGCTCCATAATCTATCTTTTCTATTACATTGTAGGGTCTTTCCTAGTTTGAAACCATCTTTCCTT
66 GGCTCCATAATCTATCTTTTCTATTACATTGTAGGGTCTTTCCTAGTTTGAAACCATCTTTCCTT
86568096 GTTGCGACGCGTGAAGGATAGATTTAGCATTCCTAAGAACAAGATCACCCACCTGAAACCACTTT
131 GTTGCGACGCGTGAAGGATAGATTTAGCATTCCTAAGAACAAGATCACCCACCTGAAACCACTTT
86568161 TTTTTAACTTTAGAATTATCATAACGAGCCACTTGTTGATTTCGTGCAATAACTTTAACTTCTAT
196 TTTTTAACTTTAGAATTATCATAACGAGCCACTTGTTGATTTCGTGCAATAACTTTAACTTCTAT
86568226 TGTTTCCCTAACTTCATCAATAAGATCCAAGTTGA
261 TGTTTCCCTAACTTCATCAATAAGATCCAAGTTGA
86568261 TTCTTCAAATGGAGAGCATTCCATGTTCGTGGTAGAATAGGGGGCCCCATTTTTGCTAGTTTGTA
1 TTCTTCAAATGGAGAGCATTCCATGTTCGTGGTAGAATAGGGGGCCCCATTTTTGCTAGTTTGTA
86568326 GGCTCCATAATCTATCTTTTCTATTACATTGTAGGGTCTTTCCTAGTTTGAAACCATCTTTCCTT
66 GGCTCCATAATCTATCTTTTCTATTACATTGTAGGGTCTTTCCTAGTTTGAAACCATCTTTCCTT
86568391 GTTGCGACGCGTGAAGGATAGATTTAGCATTCCTAAGAACAAGATCACCCACCTGAAACCACTTT
131 GTTGCGACGCGTGAAGGATAGATTTAGCATTCCTAAGAACAAGATCACCCACCTGAAACCACTTT
86568456 TTTTTAACTTTAGAATTATCATAACGAGCCACTTGTTGATTTCGTGCAATAACTTTAACTTCTAT
196 TTTTTAACTTTAGAATTATCATAACGAGCCACTTGTTGATTTCGTGCAATAACTTTAACTTCTAT
86568521 TGTTTCCCTAACTTCATCAATAAGATCCAAGTTGA
261 TGTTTCCCTAACTTCATCAATAAGATCCAAGTTGA
86568556 TTCTT
1 TTCTT
86568561 ATGGCCTCTT
Statistics
Matches: 595, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
295 595 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (295 bp):
TTCTTCAAATGGAGAGCATTCCATGTTCGTGGTAGAATAGGGGGCCCCATTTTTGCTAGTTTGTA
GGCTCCATAATCTATCTTTTCTATTACATTGTAGGGTCTTTCCTAGTTTGAAACCATCTTTCCTT
GTTGCGACGCGTGAAGGATAGATTTAGCATTCCTAAGAACAAGATCACCCACCTGAAACCACTTT
TTTTTAACTTTAGAATTATCATAACGAGCCACTTGTTGATTTCGTGCAATAACTTTAACTTCTAT
TGTTTCCCTAACTTCATCAATAAGATCCAAGTTGA
Found at i:86577284 original size:47 final size:47
Alignment explanation
Indices: 86577212--86577497 Score: 500
Period size: 47 Copynumber: 6.1 Consensus size: 47
86577202 CAATTTTATG
* * * * * * *
86577212 CACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
86577259 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
86577306 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
86577353 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
86577400 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
86577447 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
86577494 CACT
1 CACT
86577498 GTCTTGGCTG
Statistics
Matches: 230, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:86580917 original size:40 final size:40
Alignment explanation
Indices: 86580847--86581043 Score: 286
Period size: 40 Copynumber: 4.9 Consensus size: 40
86580837 CGAATACACG
* * * * * *
86580847 TCACCAGCATGATTGCTCTTCGAGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * *
86580887 TCACTAGCAGGAATGCTCTTTGGAACTTAGCCAGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
86580927 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
86580967 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
**
86581007 TTGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
86581044 TTAGTAACTC
Statistics
Matches: 141, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:86581068 original size:40 final size:40
Alignment explanation
Indices: 86580860--86581122 Score: 255
Period size: 40 Copynumber: 6.6 Consensus size: 40
86580850 CCAGCATGAT
* * * * **
86580860 TGCTCTTCGAGATTTAGCACGGATATATCACTAGCAGGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
* * * *
86580900 TGCTCTTTGGAACTTAGCCAGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
*
86580940 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
** *
86580980 TGCTCTTCGGGACTTAGCCCGGATACATTGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
** * * *
86581020 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCATCAA
* **
86581061 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCATCAA
*
86581101 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
86581123 CATCATTCGA
Statistics
Matches: 190, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 169 0.89
41 18 0.09
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATCAA
Found at i:86581068 original size:80 final size:80
Alignment explanation
Indices: 86580847--86581122 Score: 290
Period size: 80 Copynumber: 3.5 Consensus size: 80
86580837 CGAATACACG
* * * * * * * *
86580847 TCACCAGCATGATTGCTCTTCGAGATTTAGCACGGATATATCACTAGCAGGAATGCTCTTTGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
*
86580912 CTTAGCCAGGATACA
66 CTTAGCCCGGATACA
* *
86580927 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
86580992 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
** * * * *
86581007 TTGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTC-GG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGG
* **
86581070 ATCTTAGTCCGGATATGG
65 A-CTTAGCCCGGATA-CA
* *
86581088 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
86581123 CATCATTCGA
Statistics
Matches: 167, Mismatches: 25, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
79 3 0.02
80 141 0.84
81 18 0.11
82 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
CTTAGCCCGGATACA
Found at i:86581068 original size:120 final size:121
Alignment explanation
Indices: 86580847--86581122 Score: 283
Period size: 120 Copynumber: 2.3 Consensus size: 121
86580837 CGAATACACG
* * * * * * *
86580847 TCACCAGCATGATTGCTCTTCGAGATTTAGCACGGATATATCACTAGCAGGAATGCTCTTTGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAGGAATGCTCTTCGGAA
* **
86580912 CTTAGCCAGGATACATCACTAGCATGAATGCTCTTCGGGA-CTTAGCCCGGATA-CA
66 CTTAGCCAGGATACATAACTAGCACCAATGCTCTTC-GGATCTTAGCCCGGATATCA
** * *
86580967 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATTGCTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAGGAATGCTCTTCGGAA
* ** * * **
86581032 CTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGG
66 CTTAGCCAGGATACA-TAACTAGCACCAATGCTCTTCGGATCTTAGCCCGGATATCA
* *
86581088 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
86581123 CATCATTCGA
Statistics
Matches: 129, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
119 3 0.02
120 101 0.78
121 20 0.16
122 5 0.04
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (121 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAGGAATGCTCTTCGGAA
CTTAGCCAGGATACATAACTAGCACCAATGCTCTTCGGATCTTAGCCCGGATATCA
Found at i:86581467 original size:29 final size:29
Alignment explanation
Indices: 86581428--86581506 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
86581418 CTTAATAATC
*
86581428 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
86581458 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
86581487 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
86581507 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:86581549 original size:43 final size:43
Alignment explanation
Indices: 86581488--86581591 Score: 199
Period size: 43 Copynumber: 2.4 Consensus size: 43
86581478 TGCATTTCAA
86581488 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
86581531 GCCCGCACACTTAGTGCCAATCTCACAGCCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
86581574 GCCCGCACACTTAGTGCC
1 GCCCGCACACTTAGTGCC
86581592 GAAAACCAAC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.25, C:0.37, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:86583696 original size:47 final size:47
Alignment explanation
Indices: 86583618--86583824 Score: 324
Period size: 47 Copynumber: 4.4 Consensus size: 47
86583608 CCCTTCGGGA
* * * * * *
86583618 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86583665 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86583712 CTTATCACATATATACACTTTCACATTCCTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86583759 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86583806 TTTATCACATATATACACT
1 CTTATCACATATATACACT
86583825 GTCTTGGCTG
Statistics
Matches: 147, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 147 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86595750 original size:23 final size:23
Alignment explanation
Indices: 86595707--86595750 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
86595697 CATCATAATA
*
86595707 TCATCTATTTCATATCACAAAAC
1 TCATCTATATCATATCACAAAAC
*
86595730 TCATC-ATATCATCATCTCAAA
1 TCATCTATATCAT-ATCACAAA
86595751 CCAAACCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (23 bp):
TCATCTATATCATATCACAAAAC
Found at i:86612468 original size:28 final size:29
Alignment explanation
Indices: 86612414--86612468 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
86612404 ACAGGGGTTT
* *
86612414 TCACACGGCCTTGCACACGCCCGTGTCCC
1 TCACACGGCCATGCACACGCCCATGTCCC
86612443 TCACACGGCCATG-ACACGCCCATGTC
1 TCACACGGCCATGCACACGCCCATGTC
86612469 TCAGTCCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.18, C:0.45, G:0.20, T:0.16
Consensus pattern (29 bp):
TCACACGGCCATGCACACGCCCATGTCCC
Found at i:86613746 original size:48 final size:48
Alignment explanation
Indices: 86613672--86614039 Score: 389
Period size: 48 Copynumber: 7.7 Consensus size: 48
86613662 TAAATTTCCA
* * * * *
86613672 ATGCCATATCCCAGATATGGTCTTACACTGGCTCACATGTCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAGGCCG
* * * * * * *
86613720 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCGTCTTAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAGGCCG
* * *
86613768 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAGGCCG
* * * *
86613816 ATGCCATATCCCAGACATGGTCTTACATTGGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAGGCCG
* * * * * *
86613864 ATACCATGTCCCAGACATGGACTTACACTAGCTCTCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAGGCCG
* * * *
86613912 ATGCCATGTCCCAGGCATGGTCTTACACTAG-TACACATATCAACGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATGTCAAGGCCG
* * ** * *
86613960 ATGCCATGTCCCAAACATGGTCTTACACTAACTCTTATAAT-ATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-GTCAAGGCCG
86614008 ATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
86614040 ACATATATCA
Statistics
Matches: 264, Mismatches: 53, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
47 1 0.00
48 260 0.98
49 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCAAGGCCG
Found at i:86613932 original size:144 final size:144
Alignment explanation
Indices: 86613672--86614039 Score: 492
Period size: 144 Copynumber: 2.6 Consensus size: 144
86613662 TAAATTTCCA
* *
86613672 ATGCCATATCCCAGATATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGACA
1 ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
* * *
86613737 TGGTTTTACACTAGCTCTCGTCTTAATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT-
66 TGGTCTTACACTAGCTCTCGTCTCAATGCCAATGCCATGTCCCAGACATGGTCTTACACTAG-TA
* * *
86613801 CACATGTCGA-GGTCG
130 CACATATCAACGCT-G
* *
86613816 ATGCCATATCCCAGACATGGTCTTACATTGGCTCACATGTCGAGGCCGATACCATGTCCCAGACA
1 ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
* * *
86613881 TGGACTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGGCATGGTCTTACACTAGTAC
66 TGGTCTTACACTAGCTCTCGTCTCAATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGTAC
86613946 ACATATCAACGCTG
131 ACATATCAACGCTG
* * ** ** *
86613960 ATGCCATGTCCCAAACATGGTCTTACACTAACTCTTATAAT--ATGGCCGATGCCATGTCCCAGA
1 ATGCCATATCCCAGACATGGTCTTACACTGGCTCACAT-GTCGA-GGCCGATGCCATGTCCCAGA
86614023 CATGGTCTTACACTAGC
64 CATGGTCTTACACTAGC
86614040 ACATATATCA
Statistics
Matches: 197, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
143 2 0.01
144 192 0.97
145 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (144 bp):
ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCTCGTCTCAATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGTAC
ACATATCAACGCTG
Found at i:86615829 original size:87 final size:86
Alignment explanation
Indices: 86615690--86615940 Score: 466
Period size: 87 Copynumber: 2.9 Consensus size: 86
86615680 TTATTGGGAA
* *
86615690 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCAAG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAAG
86615755 GCTTTTAGCGGCGTTTGGGGT
66 GCTTTTAGCGGCGTTTGGGGT
86615776 AAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAA
1 AAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAA
86615841 GGCTTTTAGCGGCGTTTGGGGT
65 GGCTTTTAGCGGCGTTTGGGGT
*
86615863 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAAG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAAG
86615928 GCTTTTAGCGGCG
66 GCTTTTAGCGGCG
86615941 CTTTTTTTAC
Statistics
Matches: 161, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
86 76 0.47
87 85 0.53
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23
Consensus pattern (86 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAAG
GCTTTTAGCGGCGTTTGGGGT
Found at i:86615846 original size:130 final size:129
Alignment explanation
Indices: 86615690--86615940 Score: 466
Period size: 130 Copynumber: 1.9 Consensus size: 129
86615680 TTATTGGGAA
*
86615690 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCAAG
1 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAAG
*
86615755 GCTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGCGGCGTTTGGGGT
66 GCTTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGGGGT
*
86615820 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAAG
1 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAAG
86615885 GCTTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
66 GCTTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
86615941 CTTTTTTTAC
Statistics
Matches: 118, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
129 11 0.09
130 107 0.91
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23
Consensus pattern (129 bp):
AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGGTCAAG
GCTTTTAGCGGCGTTTGGGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGT
Found at i:86615962 original size:43 final size:43
Alignment explanation
Indices: 86615690--86615940 Score: 466
Period size: 43 Copynumber: 5.8 Consensus size: 43
86615680 TTATTGGGAA
* *
86615690 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGT
86615733 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGT
86615776 AAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGCGGCGTTTGGGGT
1 AAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGGGGT
86615820 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGT
*
86615863 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGT
86615906 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
86615941 CTTTTTTTAC
Statistics
Matches: 204, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
43 161 0.79
44 43 0.21
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGGGGT
Found at i:86622012 original size:9 final size:9
Alignment explanation
Indices: 86621998--86622187 Score: 107
Period size: 9 Copynumber: 20.6 Consensus size: 9
86621988 TATTTAAGTA
86621998 TTATGTAAG
1 TTATGTAAG
86622007 TTATGTAAG
1 TTATGTAAG
*
86622016 TTATGATATG
1 TTATG-TAAG
* * *
86622026 ATATAT-AT
1 TTATGTAAG
*
86622034 TTATGTAAA
1 TTATGTAAG
* *
86622043 TTATAT-AT
1 TTATGTAAG
*
86622051 TTATCTAAG
1 TTATGTAAG
*
86622060 TTATATAAG
1 TTATGTAAG
86622069 TTATGTAAG
1 TTATGTAAG
*
86622078 TTATGTAAA
1 TTATGTAAG
*
86622087 TTATGATATAAAA
1 TTATG---T-AAG
*
86622100 TATATTTAAG
1 T-TATGTAAG
86622110 TATTATGTAAG
1 --TTATGTAAG
86622121 TTATGTAAG
1 TTATGTAAG
* *
86622130 TTATAT-AT
1 TTATGTAAG
*
86622138 TTATCTAAG
1 TTATGTAAG
*
86622147 TTATATAAG
1 TTATGTAAG
*
86622156 TTATGTACG
1 TTATGTAAG
*
86622165 TTTTGTAAG
1 TTATGTAAG
* *
86622174 TTATATAAA
1 TTATGTAAG
86622183 TTATG
1 TTATG
86622188 ATATCAAATA
Statistics
Matches: 139, Mismatches: 31, Indels: 22
0.72 0.16 0.11
Matches are distributed among these distances:
8 16 0.12
9 98 0.71
10 8 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:86622080 original size:71 final size:69
Alignment explanation
Indices: 86621998--86622160 Score: 202
Period size: 71 Copynumber: 2.3 Consensus size: 69
86621988 TATTTAAGTA
* * * *
86621998 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
86622062 ATATAAG
64 ATAT-AG
* * *
86622069 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
86622134 ATAT
66 ATAG
* *
86622138 TTATCTAAGTTATATAAGTTATG
1 TTATGTAAGTTATGTAAGTTATG
86622161 TACGTTTTGT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 27 0.34
70 15 0.19
71 38 0.47
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:86622136 original size:87 final size:90
Alignment explanation
Indices: 86622034--86622218 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 90
86622024 TGATATATAT
*
86622034 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
86622096 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
*
86622121 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----TTGTAAGTTATATAAATTA
* *
86622186 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
86622217 TT
1 TT
86622219 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 34 0.40
90 1 0.01
91 2 0.02
96 48 0.56
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:86622174 original size:114 final size:114
Alignment explanation
Indices: 86621974--86622187 Score: 299
Period size: 114 Copynumber: 1.9 Consensus size: 114
86621964 ACTAGTTATG
* * *
86621974 TATGATATGAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
*
86622039 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
86622088 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
86622151 ATAAGTTATGTACGTTT-TGTAAGTTATATAAATTATG
65 ATAAATTATATA--TTTATCTAAGTTATATAAATTATG
86622188 ATATCAAATA
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.20
114 63 0.72
115 3 0.03
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:86622226 original size:87 final size:87
Alignment explanation
Indices: 86622034--86622218 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 87
86622024 TGATATATAT
*
86622034 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
86622099 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* * *
86622121 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTAT-ATA-AAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAA-
*
86622184 TATGATATCAAATATATTTATGT-A-
65 AAT-ATATCAAA-ATA-TTATGTAAG
86622208 TTATGTAAGTT
1 TTATGTAAGTT
86622219 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 70 0.81
88 3 0.03
89 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:86622312 original size:15 final size:15
Alignment explanation
Indices: 86622292--86622339 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
86622282 AAGTAGCAGG
86622292 ATTAAATAATATTTA
1 ATTAAATAATATTTA
86622307 ATTAAATAATATTT-
1 ATTAAATAATATTTA
* *
86622321 ATAAAATTAT-TTTA
1 ATTAAATAATATTTA
86622335 ATTAA
1 ATTAA
86622340 GTGATATACA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 3 0.10
14 12 0.41
15 14 0.48
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:86622571 original size:71 final size:72
Alignment explanation
Indices: 86622451--86622611 Score: 297
Period size: 72 Copynumber: 2.2 Consensus size: 72
86622441 TACATATTAC
86622451 TATAAAAAAAGAATCGT-AATAAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAAT
1 TATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAAT
86622515 ATAATAA
66 ATAATAA
**
86622522 TATAAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAAT
1 TATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAAT
86622587 ATAATAA
66 ATAATAA
86622594 TATAAAAAAAGAATCGTA
1 TATAAAAAAAGAATCGTA
86622612 GTTTAATTTT
Statistics
Matches: 87, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
71 17 0.20
72 70 0.80
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (72 bp):
TATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAAT
ATAATAA
Found at i:86623027 original size:273 final size:273
Alignment explanation
Indices: 86622538--86623635 Score: 2142
Period size: 273 Copynumber: 4.0 Consensus size: 273
86622528 AAAAGAATCG
86622538 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
1 TAAATATTAAAATCAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAATAT-AAAAA
86622603 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
64 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATA
86622668 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
129 GAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
86622733 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
194 AGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
86622798 AATCTTTAAAATATT
259 AATCTTTAAAATATT
86622813 TAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAG
1 TAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAG
86622878 AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGA
66 AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGA
86622943 ACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAG
131 ACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAG
*
86623008 GATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAAGTTTCCAGCCTATATACTTTGAA
196 GATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAA
86623073 TCTTTAAAATATT
261 TCTTTAAAATATT
*
86623086 TAAATATTAAAATCAAGCATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAG
1 TAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAG
86623151 AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGA
66 AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGA
86623216 ACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAG
131 ACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAG
86623281 GATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAA
196 GATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAA
86623346 TCTTTAAAATATT
261 TCTTTAAAATATT
*
86623359 TAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTAAATATAATAATATAAAAAAG
1 TAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAG
86623424 AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGA
66 AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGA
86623489 ACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAG
131 ACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAG
*
86623554 AATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAA
196 GATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAA
86623619 TCTTTAAAATATT
261 TCTTTAAAATATT
86623632 TAAA
1 TAAA
86623636 ATAAGGTTGG
Statistics
Matches: 817, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
273 759 0.93
274 29 0.04
275 29 0.04
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (273 bp):
TAAATATTAAAATCAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATAAAAAAG
AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGA
ACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAG
GATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAA
TCTTTAAAATATT
Found at i:86623916 original size:15 final size:15
Alignment explanation
Indices: 86623896--86623924 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
86623886 TAGAATTTGA
86623896 AATAAAACGTACCTT
1 AATAAAACGTACCTT
86623911 AATAAAACGTACCT
1 AATAAAACGTACCT
86623925 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:86624433 original size:183 final size:183
Alignment explanation
Indices: 86624125--86624493 Score: 693
Period size: 183 Copynumber: 2.0 Consensus size: 183
86624115 CCTAGAACAG
86624125 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
86624190 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* *
86624255 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
*
86624308 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
86624373 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* *
86624438 AGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
86624491 ATG
1 ATG
86624494 GAACTATATC
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
Found at i:86627440 original size:15 final size:15
Alignment explanation
Indices: 86627420--86627468 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
86627410 GGTAAAAATT
86627420 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
*
86627435 TT-GGGG-G-A-AAT
1 TTGGGGGAGAAGAAG
86627446 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
86627461 TTGGGGGA
1 TTGGGGGA
86627469 AATCGGGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 4 0.14
12 5 0.18
13 2 0.07
14 5 0.18
15 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.53, T:0.18
Consensus pattern (15 bp):
TTGGGGGAGAAGAAG
Found at i:86627450 original size:26 final size:26
Alignment explanation
Indices: 86627419--86627471 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
86627409 GGGTAAAAAT
86627419 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGGGGGAGAAGAAGTTGGGGGAAA
86627445 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGGGGGAGAAGAAGTTGGGGGAAA
86627471 T
1 T
86627472 CGGGGAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.49, T:0.21
Consensus pattern (26 bp):
TTTGGGGGAGAAGAAGTTGGGGGAAA
Found at i:86627781 original size:28 final size:27
Alignment explanation
Indices: 86627749--86627818 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 27
86627739 AATCAAAACT
*
86627749 CTATACCTTAAACCATTAAACTATATCC
1 CTATACCTTAAACC-CTAAACTATATCC
* *
86627777 CTATAACCTTAATCCCTAAAGTATATCC
1 CTAT-ACCTTAAACCCTAAACTATATCC
*
86627805 CTTAAACCTTAAAC
1 C-TATACCTTAAAC
86627819 TATATCCCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 24 0.69
29 11 0.31
ACGTcount: A:0.39, C:0.29, G:0.01, T:0.31
Consensus pattern (27 bp):
CTATACCTTAAACCCTAAACTATATCC
Found at i:86627807 original size:21 final size:21
Alignment explanation
Indices: 86627783--86627826 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
86627773 ATCCCTATAA
* *
86627783 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
*
86627804 CCTTAAACCTTAAACTATATC
1 CCTTAAACCCTAAACTATATC
86627825 CC
1 CC
86627827 CTAACCATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.32, G:0.02, T:0.32
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:86627837 original size:20 final size:21
Alignment explanation
Indices: 86627793--86627838 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
86627783 CCTTAATCCC
* * *
86627793 TAAAGTATATCCCTTAAACCT
1 TAAACTATATCCCCTAAACCA
86627814 TAAACTATATCCCCT-AACCA
1 TAAACTATATCCCCTAAACCA
86627834 TAAAC
1 TAAAC
86627839 CACAAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.41, C:0.28, G:0.02, T:0.28
Consensus pattern (21 bp):
TAAACTATATCCCCTAAACCA
Found at i:86628059 original size:7 final size:7
Alignment explanation
Indices: 86628047--86628080 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
86628037 CCCTAAGTAT
86628047 TAACCCC
1 TAACCCC
86628054 TAACCCC
1 TAACCCC
86628061 TAACCCC
1 TAACCCC
*
86628068 TAACCCA
1 TAACCCC
86628075 TAACCC
1 TAACCC
86628081 TTAAATCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.32, C:0.53, G:0.00, T:0.15
Consensus pattern (7 bp):
TAACCCC
Found at i:86628231 original size:41 final size:41
Alignment explanation
Indices: 86628186--86628405 Score: 316
Period size: 41 Copynumber: 5.4 Consensus size: 41
86628176 AACCCTAAAC
*
86628186 TTTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* * * **
86628227 TTTTTAGCGACGTTTTACCAAAAGCGCCCCTAATACTCCGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* *
86628268 TTTTTAGCGGCGCTTTACCAAAAGCGCCGCTAATGCTCTGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*
86628309 TTTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* * *
86628350 TTTTTAGCGACGTTTTACCAAAAGCGCCGCTATTGCTC-TG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*
86628390 CTTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
86628406 TGGTAAAACG
Statistics
Matches: 159, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 15 0.09
41 144 0.91
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
Found at i:86628475 original size:12 final size:12
Alignment explanation
Indices: 86628460--86628485 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86628450 GTTTTTTGAG
86628460 AAAACGCCGCTA
1 AAAACGCCGCTA
86628472 AAAACGCCGCTA
1 AAAACGCCGCTA
86628484 AA
1 AA
86628486 TACCTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:86628782 original size:22 final size:22
Alignment explanation
Indices: 86628749--86628791 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86628739 TATATTGTTC
86628749 AATTCTAATTTGAATTCTTGGT
1 AATTCTAATTTGAATTCTTGGT
*
86628771 AATT-TAAGTTTGATTTCTTGG
1 AATTCTAA-TTTGAATTCTTGG
86628792 ACATAACTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.26, C:0.07, G:0.16, T:0.51
Consensus pattern (22 bp):
AATTCTAATTTGAATTCTTGGT
Found at i:86632490 original size:29 final size:29
Alignment explanation
Indices: 86632458--86632542 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 29
86632448 ATGTTTAATA
*
86632458 TGGTACTTCTACTTTGAAAATGTCCAACG
1 TGGTACTTCTAATTTGAAAATGTCCAACG
* * *
86632487 TGGTACTTGTAATTTGGAAATGTCCAATG
1 TGGTACTTCTAATTTGAAAATGTCCAACG
*
86632516 TAGTA-TTCGTAATTT-AGAAATGTCCAA
1 TGGTACTTC-TAATTTGA-AAATGTCCAA
86632543 TGTGATAACT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
28 2 0.04
29 45 0.96
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (29 bp):
TGGTACTTCTAATTTGAAAATGTCCAACG
Found at i:86632543 original size:29 final size:29
Alignment explanation
Indices: 86632475--86632545 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
86632465 TCTACTTTGA
* * *
86632475 AAATGTCCAACGTGGTACTTGTAATTTGG
1 AAATGTCCAATGTAGTACTTGTAATTTAG
86632504 AAATGTCCAATGTAGTA-TTCGTAATTTAG
1 AAATGTCCAATGTAGTACTT-GTAATTTAG
86632533 AAATGTCCAATGT
1 AAATGTCCAATGT
86632546 GATAACTGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 2 0.05
29 36 0.95
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (29 bp):
AAATGTCCAATGTAGTACTTGTAATTTAG
Found at i:86632883 original size:19 final size:19
Alignment explanation
Indices: 86632829--86632883 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
86632819 AAAAATAGAT
86632829 TTTTTATATATTTTAA-TAA
1 TTTTTATAT-TTTTAATTAA
* * **
86632848 TTTTAAAATTTAAAATTAA
1 TTTTTATATTTTTAATTAA
86632867 TTTTTATATTTTTAATT
1 TTTTTATATTTTTAATT
86632884 TTAAACATTT
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTATATTTTTAATTAA
Found at i:86651885 original size:11 final size:11
Alignment explanation
Indices: 86651869--86651911 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
86651859 TAGAATATAT
86651869 CCCATACCTTG
1 CCCATACCTTG
*
86651880 CCCATACCTTT
1 CCCATACCTTG
*
86651891 CCCATACC-TA
1 CCCATACCTTG
86651901 CCCATACCTTG
1 CCCATACCTTG
86651912 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:86651896 original size:22 final size:21
Alignment explanation
Indices: 86651868--86651910 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
86651858 TTAGAATATA
*
86651868 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
86651890 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
86651911 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:86652470 original size:18 final size:18
Alignment explanation
Indices: 86652449--86652537 Score: 99
Period size: 18 Copynumber: 4.9 Consensus size: 18
86652439 CGTTTACGGT
*
86652449 ACTATTCATGTATAC-GAC
1 ACTATTCACGTATACAG-C
*
86652467 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGC
*
86652485 ACTATTTACGTATACAGC
1 ACTATTCACGTATACAGC
* * *
86652503 ACTATTCATGTATACGGT
1 ACTATTCACGTATACAGC
*
86652521 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
86652538 TAGTTGGGAT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
18 58 0.98
19 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:86652498 original size:36 final size:36
Alignment explanation
Indices: 86652447--86652537 Score: 121
Period size: 36 Copynumber: 2.5 Consensus size: 36
86652437 ACCGTTTACG
*
86652447 GTACTATTCATGTATAC-GACACTATTCACGTATACA
1 GTACTATTCACGTATACAG-CACTATTCACGTATACA
* * *
86652483 GTACTATTTACGTATACAGCACTATTCATGTATACG
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
*
86652519 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
86652538 TAGTTGGGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
36 47 0.98
37 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (36 bp):
GTACTATTCACGTATACAGCACTATTCACGTATACA
Found at i:86656599 original size:11 final size:11
Alignment explanation
Indices: 86656583--86656625 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
86656573 TAGAATATAT
86656583 CCCATACCTTG
1 CCCATACCTTG
*
86656594 CCCATACCTTT
1 CCCATACCTTG
*
86656605 CCCATACC-TA
1 CCCATACCTTG
86656615 CCCATACCTTG
1 CCCATACCTTG
86656626 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:86656610 original size:22 final size:21
Alignment explanation
Indices: 86656582--86656624 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
86656572 TTAGAATATA
*
86656582 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
86656604 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
86656625 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:86659234 original size:20 final size:22
Alignment explanation
Indices: 86659185--86659260 Score: 61
Period size: 21 Copynumber: 3.6 Consensus size: 22
86659175 AAAGTAGTAT
*
86659185 AGTCTTGAGACTTACTAGTCTA
1 AGTCTCGAGACTTACTAGTCTA
* *
86659207 AGTATCGAGACTTAC-CGT-TA
1 AGTCTCGAGACTTACTAGTCTA
* *
86659227 AGTCTCGAGCCTTGTCT-GTCT-
1 AGTCTCGAGACTT-ACTAGTCTA
*
86659248 AGTCTCAAGACTT
1 AGTCTCGAGACTT
86659261 CAAGACTTCT
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
20 13 0.30
21 16 0.37
22 14 0.33
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (22 bp):
AGTCTCGAGACTTACTAGTCTA
Found at i:86668852 original size:29 final size:29
Alignment explanation
Indices: 86668810--86668870 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
86668800 TCGTGAATAC
86668810 TTAGAATATAAATGACATGCCATTAGGGA
1 TTAGAATATAAATGACATGCCATTAGGGA
*
86668839 TTAGAATATAAATGACATGTCATTAGGGA
1 TTAGAATATAAATGACATGCCATTAGGGA
86668868 TTA
1 TTA
86668871 ACAGTTTTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (29 bp):
TTAGAATATAAATGACATGCCATTAGGGA
Found at i:86672297 original size:30 final size:30
Alignment explanation
Indices: 86672263--86672322 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86672253 ACTTAACATG
*
86672263 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
86672293 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
86672323 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:86678513 original size:12 final size:12
Alignment explanation
Indices: 86678496--86678520 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86678486 TTGCTTACAG
86678496 TTTTTTATTTTA
1 TTTTTTATTTTA
86678508 TTTTTTATTTTA
1 TTTTTTATTTTA
86678520 T
1 T
86678521 ATACTTTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:86680602 original size:144 final size:144
Alignment explanation
Indices: 86680342--86680636 Score: 563
Period size: 144 Copynumber: 2.0 Consensus size: 144
86680332 TGTCTTAGTA
* *
86680342 ATATTGAAGACGATACAAACATGGCGTATAAAAAATAAATATAACATATGACATGAAAAAATGAC
1 ATATTGAACACGATACAAACATGGCATATAAAAAATAAATATAACATATGACATGAAAAAATGAC
86680407 TCGAATATATGGACTGTCAGATCTAATGCTGCATTCATGTGGAACTCACTAACATATGCTTCTTT
66 TCGAATATATGGACTGTCAGATCTAATGCTGCATTCATGTGGAACTCACTAACATATGCTTCTTT
86680472 ACTCTTGAGCAGGT
131 ACTCTTGAGCAGGT
86680486 ATATTGAACACGATACAAACATGGCATATAAAAAATAAATATAACATATGACATGAAAAAATGAC
1 ATATTGAACACGATACAAACATGGCATATAAAAAATAAATATAACATATGACATGAAAAAATGAC
86680551 TCGAATATATGGACTGTCAGATCTAATGCTGCATTCATGTGGAACTCACTAACATATGCTTCTTT
66 TCGAATATATGGACTGTCAGATCTAATGCTGCATTCATGTGGAACTCACTAACATATGCTTCTTT
86680616 ACTCTTGAGCAGGT
131 ACTCTTGAGCAGGT
86680630 ATCATTG
1 AT-ATTG
86680637 GCCTTCAATC
Statistics
Matches: 148, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
144 144 0.97
145 4 0.03
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (144 bp):
ATATTGAACACGATACAAACATGGCATATAAAAAATAAATATAACATATGACATGAAAAAATGAC
TCGAATATATGGACTGTCAGATCTAATGCTGCATTCATGTGGAACTCACTAACATATGCTTCTTT
ACTCTTGAGCAGGT
Found at i:86682943 original size:17 final size:17
Alignment explanation
Indices: 86682891--86682943 Score: 52
Period size: 19 Copynumber: 3.0 Consensus size: 17
86682881 TATAGAAACA
* *
86682891 TAATCTTCGAGGATATG
1 TAATCTTAGAAGATATG
* *
86682908 CAGTCTTAGATATGATATG
1 TAATCTTAGA-A-GATATG
86682927 TAATCTTAGAAGATATG
1 TAATCTTAGAAGATATG
86682944 ATTTTGTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
17 13 0.46
18 1 0.04
19 14 0.50
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (17 bp):
TAATCTTAGAAGATATG
Found at i:86682943 original size:22 final size:22
Alignment explanation
Indices: 86682915--86682973 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 22
86682905 ATGCAGTCTT
*
86682915 AGATATGATATGTAATCTTAGA
1 AGATATGATTTGTAATCTTAGA
*
86682937 AGATATGATTTTGTAATTTTAGA
1 AGATATGA-TTTGTAATCTTAGA
86682960 AGATATGATTTGTA
1 AGATATGATTTGTA
86682974 GATATCCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 14 0.41
23 20 0.59
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (22 bp):
AGATATGATTTGTAATCTTAGA
Found at i:86688012 original size:22 final size:21
Alignment explanation
Indices: 86687976--86688034 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
86687966 GGGGATATGC
86687976 AATCTTAG--ATATGATATAT
1 AATCTTAGATATATGATATAT
* *
86687995 AATCTTAGAATATATGATTTTGT
1 AATCTTAG-ATATATGA-TATAT
*
86688018 AATCTTAGATATTTGAT
1 AATCTTAGATATATGAT
86688035 TTGTAGACAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 8 0.24
21 1 0.03
22 13 0.39
23 11 0.33
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (21 bp):
AATCTTAGATATATGATATAT
Found at i:86688035 original size:22 final size:23
Alignment explanation
Indices: 86687994--86688036 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
86687984 ATATGATATA
86687994 TAATCTTAGAATATATGATTTTG
1 TAATCTTAGAATATATGATTTTG
*
86688017 TAATCTTAG-ATATTTGATTT
1 TAATCTTAGAATATATGATTT
86688037 GTAGACATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.51
Consensus pattern (23 bp):
TAATCTTAGAATATATGATTTTG
Found at i:86691542 original size:41 final size:43
Alignment explanation
Indices: 86691475--86691574 Score: 132
Period size: 41 Copynumber: 2.4 Consensus size: 43
86691465 TGAGAAAACG
* * *
86691475 TGTAAGACTATGTCTGGGACATTGGCATC-ATATATGATA-CA
1 TGTAAGACCATGTCTGAGACAGTGGCATCGATATATGATAGCA
* *
86691516 TGTAAGACCCTGTCTGAGACAGTGGCATCGATATGTGATAGCA
1 TGTAAGACCATGTCTGAGACAGTGGCATCGATATATGATAGCA
*
86691559 TGTAAGACCATATCTG
1 TGTAAGACCATGTCTG
86691575 GGATATGGCA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 25 0.50
42 9 0.18
43 16 0.32
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTGAGACAGTGGCATCGATATATGATAGCA
Done.