Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 264 of 356
Found at i:86695251 original size:77 final size:77
Alignment explanation
Indices: 86695116--86695414 Score: 449
Period size: 77 Copynumber: 3.9 Consensus size: 77
86695106 AATTCAAATC
** *
86695116 TTATCATTCTTTAAAATTTAAATTGAATTAAAATTCCATCATCTTTTTAACTTCTTATCCTAATT
1 TTATCATTCTTTAAAATTTAAATAAAATTAAAATTCCATCATCTTTTTATCTTCTTATCCTAATT
86695181 TGAAATCATATA
66 TGAAATCATATA
* * * *
86695193 TTATCCTTCTTTAAAATTTAAATAAAATTAAAATTTCATCAACTTTTTATCTTATTATCCTAATT
1 TTATCATTCTTTAAAATTTAAATAAAATTAAAATTCCATCATCTTTTTATCTTCTTATCCTAATT
*
86695258 TAAAATCATATA
66 TGAAATCATATA
*
86695270 TTATCATTCTTTAAAATTTAAATAGAAA-TAAAATTTCATCATCTTTTTATCTTCTTATCCTAAT
1 TTATCATTCTTTAAAATTTAAATA-AAATTAAAATTCCATCATCTTTTTATCTTCTTATCCTAAT
* *
86695334 TTGAAATCACATC
65 TTGAAATCATATA
* * *
86695347 TTATCCTTCTTTAAAATTTAAATAGAATTAAAATTCCAT-ATCTTTTTACCTTCTTATCCTAATT
1 TTATCATTCTTTAAAATTTAAATAAAATTAAAATTCCATCATCTTTTTATCTTCTTATCCTAATT
86695411 TGAA
66 TGAA
86695415 TTTCAAATTA
Statistics
Matches: 202, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
76 30 0.15
77 169 0.84
78 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.02, T:0.46
Consensus pattern (77 bp):
TTATCATTCTTTAAAATTTAAATAAAATTAAAATTCCATCATCTTTTTATCTTCTTATCCTAATT
TGAAATCATATA
Found at i:86695554 original size:15 final size:15
Alignment explanation
Indices: 86695534--86695567 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
86695524 TTACATCCCA
*
86695534 AAAATTGGGTTAGCG
1 AAAATTGGATTAGCG
*
86695549 AAAATTGGATTAGTG
1 AAAATTGGATTAGCG
86695564 AAAA
1 AAAA
86695568 ATGAGAGTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.26
Consensus pattern (15 bp):
AAAATTGGATTAGCG
Found at i:86705485 original size:19 final size:19
Alignment explanation
Indices: 86705440--86705487 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
86705430 ATTATATTAT
*
86705440 ATTATAATAATATTAAGTAA
1 ATTA-AATAATATTAAATAA
*
86705460 ATGAAATAATAATTAAAT-A
1 ATTAAATAAT-ATTAAATAA
86705479 ATTAAATAA
1 ATTAAATAA
86705488 AAGAAATAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
ATTAAATAATATTAAATAA
Found at i:86705553 original size:20 final size:23
Alignment explanation
Indices: 86705530--86705576 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
86705520 GAAACGAAAC
86705530 AAAAGGA-AAAG-AAAGAAGGA-
1 AAAAGGAGAAAGAAAAGAAGGAG
86705550 AAAA-GAGAAAGAAAAGAAGGAG
1 AAAAGGAGAAAGAAAAGAAGGAG
86705572 AAAAG
1 AAAAG
86705577 TTAGGCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 2 0.09
20 8 0.35
21 9 0.39
22 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (23 bp):
AAAAGGAGAAAGAAAAGAAGGAG
Found at i:86709482 original size:7 final size:6
Alignment explanation
Indices: 86709455--86709479 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
86709445 AACATAAATT
86709455 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
86709480 ATATAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:86710238 original size:9 final size:9
Alignment explanation
Indices: 86710195--86710238 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
86710185 GGATTATTTT
86710195 TATAAAAAA
1 TATAAAAAA
86710204 TA-AAAAAA
1 TATAAAAAA
*
86710212 TGTAAAAAA
1 TATAAAAAA
**
86710221 TATTTAAAA
1 TATAAAAAA
86710230 TATAAAAAA
1 TATAAAAAA
86710239 AGTGATAGCG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
8 7 0.25
9 21 0.75
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (9 bp):
TATAAAAAA
Found at i:86718175 original size:93 final size:93
Alignment explanation
Indices: 86718067--86718238 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86718057 CGCTCCTAAG
* * *
86718067 TGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86718132 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* * *
86718160 TGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86718225 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86718239 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
TGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:86718235 original size:46 final size:46
Alignment explanation
Indices: 86718063--86718235 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
86718053 AACCCGCTCC
* * * *
86718063 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
86718109 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
86718157 TCA-TGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
86718202 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86718236 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 1 0.01
46 60 0.57
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:86719689 original size:21 final size:20
Alignment explanation
Indices: 86719659--86719701 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
86719649 TAATATTGGT
* *
86719659 AAGTGGATTAGAAAATAAAAG
1 AAGTGAATTA-AAAAGAAAAG
86719680 AAGTGAATTAAAAAGAAAAG
1 AAGTGAATTAAAAAGAAAAG
86719700 AA
1 AA
86719702 AGGATGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (20 bp):
AAGTGAATTAAAAAGAAAAG
Found at i:86720474 original size:13 final size:13
Alignment explanation
Indices: 86720456--86720480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86720446 TAATGGTATA
86720456 TTGAATCCATGAC
1 TTGAATCCATGAC
86720469 TTGAATCCATGA
1 TTGAATCCATGA
86720481 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:86721059 original size:27 final size:27
Alignment explanation
Indices: 86721025--86721202 Score: 182
Period size: 27 Copynumber: 6.6 Consensus size: 27
86721015 TAAATTGTAC
86721025 AGCACTAAGTGTGCGATATGACTATGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
86721052 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATATGACTATGT
* *
86721078 ATGCACTAAGTGTGCGA-ATTGACCATGC
1 A-GCACTAAGTGTGCGATA-TGACTATGT
* *
86721106 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TATGACTATGT
* * *
86721134 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATATGACTATGT
* *
86721161 AGCACTAAGTGTGCGAGT-TGATTATAT
1 AGCACTAAGTGTGCGA-TATGACTATGT
*
86721188 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86721203 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 105 0.81
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATATGACTATGT
Found at i:86721140 original size:82 final size:81
Alignment explanation
Indices: 86721026--86721181 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
86721016 AAATTGTACA
* *
86721026 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86721090 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
86721107 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86721172 TGCGAGTTGA
65 TGCGAATTGA
86721182 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86721193 original size:82 final size:81
Alignment explanation
Indices: 86721022--86721202 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
86721012 GATTAAATTG
* *
86721022 TACAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86721087 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
86721103 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86721167 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86721185 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86721203 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86721213 original size:27 final size:27
Alignment explanation
Indices: 86721107--86721213 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
86721097 TGACCATGCG
* * * *
86721107 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
86721135 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
86721162 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
86721189 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
86721214 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:86727719 original size:21 final size:20
Alignment explanation
Indices: 86727689--86727731 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
86727679 TAATATTGGT
* *
86727689 AAGTGGATTAGAAAATAAAAG
1 AAGTGAATTA-AAAAGAAAAG
86727710 AAGTGAATTAAAAAGAAAAG
1 AAGTGAATTAAAAAGAAAAG
86727730 AA
1 AA
86727732 AGGATGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (20 bp):
AAGTGAATTAAAAAGAAAAG
Found at i:86728500 original size:13 final size:13
Alignment explanation
Indices: 86728482--86728506 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86728472 TAATGGTATA
86728482 TTGAATCCATGAC
1 TTGAATCCATGAC
86728495 TTGAATCCATGA
1 TTGAATCCATGA
86728507 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:86729083 original size:27 final size:27
Alignment explanation
Indices: 86729049--86729226 Score: 182
Period size: 27 Copynumber: 6.6 Consensus size: 27
86729039 TAAATTGTAC
86729049 AGCACTAAGTGTGCGATATGACTATGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
86729076 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATATGACTATGT
* *
86729102 ATGCACTAAGTGTGCGA-ATTGACCATGC
1 A-GCACTAAGTGTGCGATA-TGACTATGT
* *
86729130 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TATGACTATGT
* * *
86729158 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATATGACTATGT
* *
86729185 AGCACTAAGTGTGCGAGT-TGATTATAT
1 AGCACTAAGTGTGCGA-TATGACTATGT
*
86729212 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86729227 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 105 0.81
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATATGACTATGT
Found at i:86729164 original size:82 final size:81
Alignment explanation
Indices: 86729050--86729205 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
86729040 AAATTGTACA
* *
86729050 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86729114 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
86729131 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86729196 TGCGAGTTGA
65 TGCGAATTGA
86729206 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86729217 original size:82 final size:81
Alignment explanation
Indices: 86729046--86729226 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
86729036 GATTAAATTG
* *
86729046 TACAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86729111 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
86729127 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86729191 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86729209 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86729227 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86729237 original size:27 final size:27
Alignment explanation
Indices: 86729131--86729237 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
86729121 TGACCATGCG
* * * *
86729131 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
86729159 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
86729186 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
86729213 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
86729238 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:86732932 original size:44 final size:43
Alignment explanation
Indices: 86732840--86732934 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 43
86732830 TGCCATTTTT
* * ** *
86732840 GGCTTGCACCCTCTCGAGCTTGCATTAGACCGTCTGCCTCTTA
1 GGCTTGTACCCACTCGAGCTTGCATTAGACCGTCCACCACTTA
* *
86732883 GGCTTGTACCCACTCGGGCTTGCATTTAGACTGTCCACCACTTCA
1 GGCTTGTACCCACTCGAGCTTGCA-TTAGACCGTCCACCACTT-A
86732928 -GCTTGTA
1 GGCTTGTA
86732935 ATTCGACAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
43 21 0.49
44 21 0.49
45 1 0.02
ACGTcount: A:0.16, C:0.33, G:0.21, T:0.31
Consensus pattern (43 bp):
GGCTTGTACCCACTCGAGCTTGCATTAGACCGTCCACCACTTA
Found at i:86736232 original size:11 final size:12
Alignment explanation
Indices: 86736205--86736232 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
86736195 TTAATTCAAC
86736205 AAAAAATTATTT
1 AAAAAATTATTT
86736217 AAAAAATTATTT
1 AAAAAATTATTT
86736229 AAAA
1 AAAA
86736233 TTCATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAAAATTATTT
Found at i:86738930 original size:23 final size:24
Alignment explanation
Indices: 86738886--86738932 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
86738876 TTACAACAAA
* **
86738886 GTTTATATTTAAATCTTTTAAAAT
1 GTTTATATTAAAATCTAATAAAAT
86738910 GTTTATATTAAAAT-TAATAAAAT
1 GTTTATATTAAAATCTAATAAAAT
86738933 TTATTTATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (24 bp):
GTTTATATTAAAATCTAATAAAAT
Found at i:86739171 original size:13 final size:13
Alignment explanation
Indices: 86739153--86739216 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
86739143 AGTTTGGCAA
86739153 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
86739166 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
86739179 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* * *
86739192 TGCTTTTTAGAGG
1 TGCTTTTGAAAAG
86739205 TGCTTTTGAAAA
1 TGCTTTTGAAAA
86739217 TTTTGGTTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.28, C:0.08, G:0.27, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:86740334 original size:22 final size:22
Alignment explanation
Indices: 86740290--86740335 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
86740280 TATTTTTATT
86740290 TAAATTTAATTATTAAAATATA
1 TAAATTTAATTATTAAAATATA
86740312 TAAATATTAA-TA-TAAAATAATA
1 TAAAT-TTAATTATTAAAAT-ATA
86740334 TA
1 TA
86740336 TTTTAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.27
22 12 0.55
23 4 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAATTTAATTATTAAAATATA
Found at i:86744503 original size:84 final size:87
Alignment explanation
Indices: 86744412--86744591 Score: 210
Period size: 90 Copynumber: 2.1 Consensus size: 87
86744402 TTTTTAACTT
* * *
86744412 GTACTTAAACTTTTAGAATGTATGAAAA-AGA-CTTAAGCTTTCT-AGAAAAAA-AATTAAG-CT
1 GTACTTAAACTTTAAAAATGTAT-AAAAGAGACCTTAAACTTTCTCA-AAAAAACAATTAAGCCT
*
86744472 -CGTGTTTTTTTTACACACAATTGA
64 ACAT-TTTTTTTTACACACAATTGA
*
86744496 GTACTTAAACTTTAAAAATGTATAAAAGAGACCCTTAAACTTTTTCAAAAAAACAATTAAGCCCC
1 GTACTTAAACTTTAAAAATGTATAAAAGAGA-CCTTAAACTTTCTCAAAAAAACAATTAAG--CC
*
86744561 TACATTTTTTTTTACACTCAATTGA
63 TACATTTTTTTTTACACACAATTGA
86744586 GTACTT
1 GTACTT
86744592 GAACCACCCC
Statistics
Matches: 81, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
83 4 0.05
84 24 0.30
86 16 0.20
87 8 0.10
90 27 0.33
91 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (87 bp):
GTACTTAAACTTTAAAAATGTATAAAAGAGACCTTAAACTTTCTCAAAAAAACAATTAAGCCTAC
ATTTTTTTTTACACACAATTGA
Found at i:86744731 original size:19 final size:19
Alignment explanation
Indices: 86744666--86744732 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
86744656 AAAAAAATGC
86744666 TAAAAAAATCAA-TAAAAAT
1 TAAAAAAAT-AATTAAAAAT
* **
86744685 TATAAAAATAATTAAATTT
1 TAAAAAAATAATTAAAAAT
86744704 TAATAAAAAT-ATTAAAAAT
1 TAA-AAAAATAATTAAAAAT
86744723 TAGAAAAAAT
1 TA-AAAAAAT
86744733 TATAAAATTC
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
18 2 0.05
19 30 0.77
20 7 0.18
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (19 bp):
TAAAAAAATAATTAAAAAT
Found at i:86744767 original size:19 final size:19
Alignment explanation
Indices: 86744727--86744787 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
86744717 AAAAATTAGA
* *
86744727 AAAAATTATAAAATTCGT-T
1 AAAAATTGTAAAATT-TTAT
86744746 AAAAATTGTAAAATTTTAT
1 AAAAATTGTAAAATTTTAT
* **
86744765 AAAAATCGTAAAAAATTAT
1 AAAAATTGTAAAATTTTAT
86744784 AAAA
1 AAAA
86744788 TATATAGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
18 1 0.03
19 35 0.97
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAATTGTAAAATTTTAT
Found at i:86744788 original size:29 final size:29
Alignment explanation
Indices: 86744688--86744846 Score: 119
Period size: 29 Copynumber: 5.4 Consensus size: 29
86744678 TAAAAATTAT
* * * *
86744688 AAAAATAATTAAATTTTAATAAAAAT-ATT
1 AAAAATTATAAAATTTT-ATAAAAATCGTA
* ** * *
86744717 AAAAATTAGAAAAAATTATAAAATTCGTT
1 AAAAATTATAAAATTTTATAAAAATCGTA
*
86744746 AAAAATTGTAAAATTTTATAAAAATCGTA
1 AAAAATTATAAAATTTTATAAAAATCGTA
* *
86744775 AAAAATTATAAAA-TATATAGAAATATAG-A
1 AAAAATTATAAAATTTTATA-AAA-ATCGTA
* *
86744804 AAAATTTTATAAAATTTTAT-AAAGTCGTA
1 AAAA-ATTATAAAATTTTATAAAAATCGTA
86744833 AGAAAATTATAAAA
1 A-AAAATTATAAAA
86744847 AATGTAAAGA
Statistics
Matches: 102, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
28 14 0.14
29 70 0.69
30 14 0.14
31 4 0.04
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (29 bp):
AAAAATTATAAAATTTTATAAAAATCGTA
Found at i:86745105 original size:11 final size:11
Alignment explanation
Indices: 86745091--86745120 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
86745081 TTTTTTTATG
86745091 ATTTTTATAAA
1 ATTTTTATAAA
86745102 A-TTTTATAAA
1 ATTTTTATAAA
86745112 ATTTTTATA
1 ATTTTTATA
86745121 TTTTTTACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTTTTATAAA
Found at i:86748348 original size:28 final size:28
Alignment explanation
Indices: 86748289--86748360 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 28
86748279 AGAATAATTT
* * * *
86748289 TTTTCTATTTTAAATAAAATTTAAATAT
1 TTTTATATTTTTATTAAAATTTAAATAA
86748317 TTTTATATTTTTATTAAAATTT-AATAAA
1 TTTTATATTTTTATTAAAATTTAAAT-AA
*
86748345 TTTTATAACTTTTATT
1 TTTTAT-ATTTTTATT
86748361 GATTTTTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
27 3 0.08
28 26 0.70
29 8 0.22
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (28 bp):
TTTTATATTTTTATTAAAATTTAAATAA
Found at i:86748798 original size:89 final size:87
Alignment explanation
Indices: 86748574--86748796 Score: 324
Period size: 87 Copynumber: 2.5 Consensus size: 87
86748564 TTTGAGGGCT
* * * *
86748574 TTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAA-GTAGGGACTTAATTGT
1 TTTTTGATGCATTTTGAAAGTTCAAATA-CCAATTGAATGCAAAAAAAGGTAGGGACTTAATTGC
*
86748638 TTTTTCTTGAAAGTTTGATGATC
65 TTTTTCTTGAAAGTTTGATGACC
*
86748661 TTTTTGATGCATTTTGAAAGTTCCAATACCTAATTGAATGCAAAAAAAGGTAGGGACTTAATTGC
1 TTTTTGATGCATTTTGAAAGTTCAAATACC-AATTGAATGCAAAAAAAGGTAGGGACTTAATTGC
86748726 TTTTT-TTGAAAAAGTTTGATGACC
65 TTTTTCTTG--AAAGTTTGATGACC
* *
86748750 TTTTTGATACATTTTGAAAGTTCAAATACCAATTGAATGTAAAAAAA
1 TTTTTGATGCATTTTGAAAGTTCAAATACCAATTGAATGCAAAAAAA
86748797 AGTATTTAAT
Statistics
Matches: 123, Mismatches: 9, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
86 2 0.02
87 44 0.36
88 36 0.29
89 41 0.33
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (87 bp):
TTTTTGATGCATTTTGAAAGTTCAAATACCAATTGAATGCAAAAAAAGGTAGGGACTTAATTGCT
TTTTCTTGAAAGTTTGATGACC
Found at i:86750604 original size:13 final size:13
Alignment explanation
Indices: 86750586--86750613 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86750576 GTACGATCCG
86750586 TGCATGGTCACCT
1 TGCATGGTCACCT
86750599 TGCATGGTCACCT
1 TGCATGGTCACCT
86750612 TG
1 TG
86750614 GCTGCTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (13 bp):
TGCATGGTCACCT
Found at i:86751753 original size:21 final size:21
Alignment explanation
Indices: 86751721--86751761 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
86751711 AGACTCGAGG
86751721 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
86751742 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
86751762 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:86754959 original size:13 final size:13
Alignment explanation
Indices: 86754941--86754965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86754931 GCACGATCCC
86754941 TGCATGGTCACCT
1 TGCATGGTCACCT
86754954 TGCATGGTCACC
1 TGCATGGTCACC
86754966 CTGGCTGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.28
Consensus pattern (13 bp):
TGCATGGTCACCT
Found at i:86755819 original size:121 final size:121
Alignment explanation
Indices: 86755605--86755848 Score: 488
Period size: 121 Copynumber: 2.0 Consensus size: 121
86755595 AATTAGGTGA
86755605 TAACCTATTAGATTCATGCATTATCCTTAAAATGTGACATTCAACAAGTTAATACTTAAAAATAG
1 TAACCTATTAGATTCATGCATTATCCTTAAAATGTGACATTCAACAAGTTAATACTTAAAAATAG
86755670 AAAAAGAGATTATAATTAATGAAATTAGAACTCAAACCTACTTAAATGTCACCTCT
66 AAAAAGAGATTATAATTAATGAAATTAGAACTCAAACCTACTTAAATGTCACCTCT
86755726 TAACCTATTAGATTCATGCATTATCCTTAAAATGTGACATTCAACAAGTTAATACTTAAAAATAG
1 TAACCTATTAGATTCATGCATTATCCTTAAAATGTGACATTCAACAAGTTAATACTTAAAAATAG
86755791 AAAAAGAGATTATAATTAATGAAATTAGAACTCAAACCTACTTAAATGTCACCTCT
66 AAAAAGAGATTATAATTAATGAAATTAGAACTCAAACCTACTTAAATGTCACCTCT
86755847 TA
1 TA
86755849 CAGCTAACTT
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 123 1.00
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.32
Consensus pattern (121 bp):
TAACCTATTAGATTCATGCATTATCCTTAAAATGTGACATTCAACAAGTTAATACTTAAAAATAG
AAAAAGAGATTATAATTAATGAAATTAGAACTCAAACCTACTTAAATGTCACCTCT
Found at i:86757995 original size:12 final size:13
Alignment explanation
Indices: 86757969--86757995 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86757959 AACTCACACC
86757969 AACCTAATAAAAA
1 AACCTAATAAAAA
86757982 AACCTAATAAAAA
1 AACCTAATAAAAA
86757995 A
1 A
86757996 TTTACTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (13 bp):
AACCTAATAAAAA
Found at i:86766650 original size:65 final size:65
Alignment explanation
Indices: 86766544--86766696 Score: 227
Period size: 65 Copynumber: 2.4 Consensus size: 65
86766534 CGAGCCACAT
* * * *
86766544 CAGGACGCACACAAAGAGCTACGTTTGTGTCTGCAACATATGCAGGATCACAACTGATCGCATAA
1 CAGGACGCTCACAAAGAGCTGCGTTTGTGTCTACAACATATGCAGGATCACAACGGATCGCATAA
** *
86766609 TTGGACGCTCACACAA-AGCTGCGTTTGTGTCTACAACATATGCAGGATCATAACGGATCGCATA
1 CAGGACGCTCACA-AAGAGCTGCGTTTGTGTCTACAACATATGCAGGATCACAACGGATCGCATA
86766673 A
65 A
86766674 CAGGACGCTCACAAAGAGCTGCG
1 CAGGACGCTCACAAAGAGCTGCG
86766697 GTAGTGCACA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
64 2 0.03
65 73 0.95
66 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (65 bp):
CAGGACGCTCACAAAGAGCTGCGTTTGTGTCTACAACATATGCAGGATCACAACGGATCGCATAA
Found at i:86768376 original size:15 final size:15
Alignment explanation
Indices: 86768356--86768384 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
86768346 TAATCTTTTA
86768356 AGCTTGAAAATTGAT
1 AGCTTGAAAATTGAT
86768371 AGCTTGAAAATTGA
1 AGCTTGAAAATTGA
86768385 CTTTAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (15 bp):
AGCTTGAAAATTGAT
Found at i:86772744 original size:93 final size:93
Alignment explanation
Indices: 86772636--86772807 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
86772626 CGCCCATAAG
* *
86772636 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
86772701 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
86772729 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86772794 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86772808 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86772804 original size:46 final size:46
Alignment explanation
Indices: 86772629--86772804 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
86772619 TGTAACCCGC
* * *
86772629 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
86772675 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
86772725 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
86772768 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86772805 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86775171 original size:18 final size:18
Alignment explanation
Indices: 86775148--86775184 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86775138 GTATGTAAGG
*
86775148 CAAACGATAGACAGAGTT
1 CAAACGATAGACAAAGTT
*
86775166 CAAACGGTAGACAAAGTT
1 CAAACGATAGACAAAGTT
86775184 C
1 C
86775185 CATCTACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (18 bp):
CAAACGATAGACAAAGTT
Found at i:86776035 original size:7 final size:7
Alignment explanation
Indices: 86776025--86776053 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
86776015 AAAAAAAAGT
86776025 AGAAATA
1 AGAAATA
86776032 AGAAATA
1 AGAAATA
86776039 AGAAATA
1 AGAAATA
86776046 AGAAATA
1 AGAAATA
86776053 A
1 A
86776054 AATTAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (7 bp):
AGAAATA
Found at i:86783410 original size:18 final size:18
Alignment explanation
Indices: 86783367--86783413 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
86783357 AATAATAGGG
*
86783367 AAAAA-TGTAATTTTTTC
1 AAAAAGTGTAAATTTTTC
86783384 AAAAAGTGTAAATTTTTC
1 AAAAAGTGTAAATTTTTC
*
86783402 AAAAGGTGTAAA
1 AAAAAGTGTAAA
86783414 CTGTGTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (18 bp):
AAAAAGTGTAAATTTTTC
Found at i:86783710 original size:40 final size:40
Alignment explanation
Indices: 86783666--86783741 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
86783656 CGGCTAAGAA
86783666 TGACACTTAGTGTGCGGTTTGAAATAGCTTCGGCTAAATG
1 TGACACTTAGTGTGCGGTTTGAAATAGCTTCGGCTAAATG
* *
86783706 TGACACTTGGTGTGCGGTTTGAGATAGCTTCGGCTA
1 TGACACTTAGTGTGCGGTTTGAAATAGCTTCGGCTA
86783742 TATATATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (40 bp):
TGACACTTAGTGTGCGGTTTGAAATAGCTTCGGCTAAATG
Found at i:86783804 original size:28 final size:28
Alignment explanation
Indices: 86783752--86783805 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
86783742 TATATATATG
*
86783752 TGACACTTAGTGTACGAAATGTTGAGAA
1 TGACACTTAGTGTACGAAATATTGAGAA
* * *
86783780 TGACACTTGGTGTGCGAGATATTGAG
1 TGACACTTAGTGTACGAAATATTGAG
86783806 TATGTGATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (28 bp):
TGACACTTAGTGTACGAAATATTGAGAA
Found at i:86797804 original size:28 final size:28
Alignment explanation
Indices: 86797728--86797817 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
86797718 GTGACAGAGT
* * * *
86797728 CACCAGATACAGATA-TTATGACAGAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
86797755 CACCAGAATA-A-ATATTTGTGGCATAGC
1 CACCAGAA-ACAGATATTTGTGGCATAGC
86797782 CACCAGAAACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
86797810 CACAAGAA
1 CACCAGAA
86797818 CGCTTCCTCC
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
26 4 0.07
27 26 0.48
28 24 0.44
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:86798081 original size:27 final size:27
Alignment explanation
Indices: 86798051--86798195 Score: 137
Period size: 27 Copynumber: 5.4 Consensus size: 27
86798041 GGGGCAAAAT
* * *
86798051 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTATAGGGGTATCTC
* *
86798078 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATCTC
* *
86798105 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATCTC
* * * *
86798132 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATCTC
* * * * *
86798159 AGTAATTCTAACCTACAAGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATCTC
*
86798186 AGTAATTCTA
1 GGTAATTCTA
86798196 TAAATCGATG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTATAGGGGTATCTC
Found at i:86798217 original size:27 final size:27
Alignment explanation
Indices: 86798187--86798531 Score: 342
Period size: 27 Copynumber: 12.8 Consensus size: 27
86798177 GGGTATTTCA
* *
86798187 GTAATTCTATAAATCGATGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
86798214 GTAATTCTATAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
86798241 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAATG
* * * *
86798268 GTAATTCTGTAAACCGATGGTGAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
86798295 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
86798322 ATAATTCTATAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAATG
* * * *
86798349 GTAATTTTGTAAACCGATGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
86798376 ATAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAATG
* * *
86798403 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
86798430 GTAATTCTGTAAATCGAGGGT-AAA-G
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
86798455 GATAATTTTGTAAATTGAGGGTAAAATG
1 G-TAATTCTGTAAATCGAGGGTAAAATG
* * * *
86798483 GTAATTTTGCAAA-CTGAAGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAATG
*
86798510 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
86798532 CTTTGGTAAT
Statistics
Matches: 265, Mismatches: 42, Indels: 22
0.81 0.13 0.07
Matches are distributed among these distances:
25 2 0.01
26 23 0.09
27 235 0.89
28 5 0.02
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:86798576 original size:134 final size:135
Alignment explanation
Indices: 86798188--86798558 Score: 381
Period size: 135 Copynumber: 2.8 Consensus size: 135
86798178 GGTATTTCAG
* * ** ** * * *
86798188 TAATTCTATAAA-TCGATGGTAAAATGGTAATTCTATAAATTGAGGGTAAAA-TAGTAATTCTGT
1 TAATTCTATAAACT-GAGGGTAAAATGGTAATTTTGCAAACCGAAGGTAAAACGA-TAATTCTAT
** * * * * *
86798251 AAACTGAGGGTAAAATGGTAATTCTGTAAACCGATGGTGAAATAGTAATTCTATAAATCGAGGGT
64 AAACTGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGT
86798316 AAAACGA
129 AAAACGA
* * * *
86798323 TAATTCTATAAACTGAGGGTAAAATGGTAATTTTGTAAACCGATGGTAAAACGATAATTTTGTAA
1 TAATTCTATAAACTGAGGGTAAAATGGTAATTTTGCAAACCGAAGGTAAAACGATAATTCTATAA
* * *
86798388 ACTGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT-A
66 ACTGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
*
86798452 AAGGA
131 AACGA
* * * * *
86798457 TAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGCAAACTGAAGGTAAAACGGTAATTCTATAA
1 TAATTCTATAAACTGAGGGTAAAATGGTAATTTTGCAAACCGAAGGTAAAACGATAATTCTATAA
*** * *
86798522 A-TCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
66 ACT-GAGGGTAAAATGGTAATTCTACAAATCGAGGGTA
86798559 TTTCAGTAAT
Statistics
Matches: 200, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
133 1 0.00
134 89 0.44
135 108 0.54
136 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (135 bp):
TAATTCTATAAACTGAGGGTAAAATGGTAATTTTGCAAACCGAAGGTAAAACGATAATTCTATAA
ACTGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
AACGA
Found at i:86799905 original size:533 final size:533
Alignment explanation
Indices: 86798899--86799960 Score: 1901
Period size: 533 Copynumber: 2.0 Consensus size: 533
86798889 CAACCCAAAT
86798899 GAGCACGCAATAAAGCGAAAGGGATCAGCGAAGAAAGGTACATTTACTCTCCTCATGGTTCTCTC
1 GAGCACGCAATAAAGCGAAAGGGATCAGCGAAGAAAGGTACATTTACTCTCCTCATGGTTCTCTC
* * *
86798964 TATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCATCATCA
66 TATTTAAAGCCAGCTTCGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATACCACCATCATCA
* *
86799029 GAGTTTAAATTCAACACCAACTCTTGCCGCCCCCCTGTTAGCAAAATAAATGCTCTTTGATTGCC
131 GACTTTAAATTCAACACCAACTCTTGCCACCCCCCTGTTAGCAAAATAAATGCTCTTTGATTGCC
* *
86799094 ATGAGTTTCGAACCCTGGACCTCCTTGCCAACTCTATGACGCCACCTTCCTGCCTCTTATGTGGC
196 ATGAGTTTCGAACCCTAGACCTCCTTGCCAACTCTATGACGCCACCTTCCTACCTCTTATGTGGC
* *
86799159 GCTACTTTTCTACTAGACCACAAGGCTTTTTGTGGCACAATTTCTCCAACAATATTCTTAAGGCC
261 GCTACTTTGCCACTAGACCACAAGGCTTTTTGTGGCACAATTTCTCCAACAATATTCTTAAGGCC
86799224 TACCTACTACACCCAGGGTTTGATTCACCTTAAACCAAAATTTTTGCTAGAGTCCAGGTTTGAAC
326 TACCTACTACACCCAGGGTTTGATTCACCTTAAACCAAAATTTTTGCTAGAGTCCAGGTTTGAAC
*
86799289 CCAGGACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACAAAATTT
391 CCAAGACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACAAAATTT
* **
86799354 ACATGCACAACAAAATATTATAAGCTGCCTTCAACCATTCCCATGCTCAAGGCCTGAACTTCTAG
456 ACATGCACAACAAAATATTATAAGCTGCCTTCAACCATTCCCATACTCAAGGCCCAAACTTCTAG
86799419 GCCCAAATTCAAC
521 GCCCAAATTCAAC
* *
86799432 GAGCACGCCATAAAGCGAAAGGGATCAGCCG-AGAAAGGTACCTTTACTCTCCTCATGGTTCTCT
1 GAGCACGCAATAAAGCGAAAGGGATCAG-CGAAGAAAGGTACATTTACTCTCCTCATGGTTCTCT
* *
86799496 CTATTTAAAGCTAGCTTCGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATATCACCATCATC
65 CTATTTAAAGCCAGCTTCGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATACCACCATCATC
*
86799561 AGACTTTAAATTCAACACTAACTCTTGCCACCCCCCTGTTAGCAAAATAAATGCTCTTTGATTGC
130 AGACTTTAAATTCAACACCAACTCTTGCCACCCCCCTGTTAGCAAAATAAATGCTCTTTGATTGC
86799626 CATGAGTTTCGAACCCTAGACCTCCTTGCCAACTCTATGACGCCACCTTCCTACCTCTTATGTGG
195 CATGAGTTTCGAACCCTAGACCTCCTTGCCAACTCTATGACGCCACCTTCCTACCTCTTATGTGG
86799691 CGCTACTTTGCCACTAGACCACAAGGCTTTTTGTGGCACAATTTCTCCAACAATATTCTTAAGGC
260 CGCTACTTTGCCACTAGACCACAAGGCTTTTTGTGGCACAATTTCTCCAACAATATTCTTAAGGC
86799756 CTACCTACTACACCCAGGGTTTGATTCACCTTAAACCAAAATTTTTGCTAGAGTCCAGGTTTGAA
325 CTACCTACTACACCCAGGGTTTGATTCACCTTAAACCAAAATTTTTGCTAGAGTCCAGGTTTGAA
* * * *
86799821 CTCAAGACTTCTCCAACACTTTTCAGCACACTTAACCACTAAAACAAGCTTTCATTAACGAAATT
390 CCCAAGACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACAAAATT
*
86799886 TACATGCACAACAAAATATTATAAGCTGCCTTCAACCGTTCCCATACTCAAGGCCCAAACTTCTA
455 TACATGCACAACAAAATATTATAAGCTGCCTTCAACCATTCCCATACTCAAGGCCCAAACTTCTA
86799951 GGCCCAAATT
520 GGCCCAAATT
86799961 TAGGGTGTTA
Statistics
Matches: 505, Mismatches: 23, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
533 503 1.00
534 2 0.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (533 bp):
GAGCACGCAATAAAGCGAAAGGGATCAGCGAAGAAAGGTACATTTACTCTCCTCATGGTTCTCTC
TATTTAAAGCCAGCTTCGCAACCACTCTTATGTTAGCTTCCCGATGTGGGATACCACCATCATCA
GACTTTAAATTCAACACCAACTCTTGCCACCCCCCTGTTAGCAAAATAAATGCTCTTTGATTGCC
ATGAGTTTCGAACCCTAGACCTCCTTGCCAACTCTATGACGCCACCTTCCTACCTCTTATGTGGC
GCTACTTTGCCACTAGACCACAAGGCTTTTTGTGGCACAATTTCTCCAACAATATTCTTAAGGCC
TACCTACTACACCCAGGGTTTGATTCACCTTAAACCAAAATTTTTGCTAGAGTCCAGGTTTGAAC
CCAAGACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACAAAATTT
ACATGCACAACAAAATATTATAAGCTGCCTTCAACCATTCCCATACTCAAGGCCCAAACTTCTAG
GCCCAAATTCAAC
Found at i:86808335 original size:94 final size:94
Alignment explanation
Indices: 86808211--86808399 Score: 369
Period size: 94 Copynumber: 2.0 Consensus size: 94
86808201 CATACATAGT
86808211 GCGCGGATTAGGATTCTGATTTACTGGATTAACAACAATCGCAGAAGGTATCAGGTTTTCCTGAT
1 GCGCGGATTAGGATTCTGATTTACTGGATTAACAACAATCGCAGAAGGTATCAGGTTTTCCTGAT
86808276 TTTCAGCCATCTCCTCAGTGATGGTTGAA
66 TTTCAGCCATCTCCTCAGTGATGGTTGAA
86808305 GCGCGGATTAGGATTCTGATTTACTGGATTAACAACAATCGCAGAAGGTATCAGGTTTTCCTGAT
1 GCGCGGATTAGGATTCTGATTTACTGGATTAACAACAATCGCAGAAGGTATCAGGTTTTCCTGAT
*
86808370 TTTCAGCCATCTCCTCAGTGGTGGTTGAA
66 TTTCAGCCATCTCCTCAGTGATGGTTGAA
86808399 G
1 G
86808400 TATCGTCCTC
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (94 bp):
GCGCGGATTAGGATTCTGATTTACTGGATTAACAACAATCGCAGAAGGTATCAGGTTTTCCTGAT
TTTCAGCCATCTCCTCAGTGATGGTTGAA
Found at i:86813870 original size:14 final size:14
Alignment explanation
Indices: 86813851--86813880 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
86813841 CCATTTTGTC
86813851 CTTAACTTTTCCAT
1 CTTAACTTTTCCAT
86813865 CTTAACTTTTCCAT
1 CTTAACTTTTCCAT
86813879 CT
1 CT
86813881 CAAAATTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (14 bp):
CTTAACTTTTCCAT
Found at i:86832189 original size:48 final size:48
Alignment explanation
Indices: 86832066--86832194 Score: 159
Period size: 48 Copynumber: 2.7 Consensus size: 48
86832056 TCTTATATCG
* * * ** * * *
86832066 ATGCTATGTCCCAGGCATGGTCTTACACGAAATCACTTATTGCTGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACTTATCGATGCCA
* *
86832114 ATGCCATATCCCAGATATGGTCTTACATGGGATCACTTATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACTTATCGATGCCA
*
86832162 ATTCCATGTCCCAGACATGGTCTTACATGGGAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGGAT
86832195 TACACATAAC
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACTTATCGATGCCA
Found at i:86834147 original size:35 final size:35
Alignment explanation
Indices: 86834101--86834171 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
86834091 CATCTCTAGA
*
86834101 GCTTGGTAAATATGGAAAGTAATCTTCAAACATAT
1 GCTTGGCAAATATGGAAAGTAATCTTCAAACATAT
* * *
86834136 GCTTGGCAAATATGGAAGGTGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGTAATCTTCAAACATAT
86834171 G
1 G
86834172 TGATCCTAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGTAATCTTCAAACATAT
Found at i:86835095 original size:18 final size:17
Alignment explanation
Indices: 86835055--86835101 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
86835045 TTAAAAGTTA
*
86835055 AGTTTCGAAAACATAGT
1 AGTTTTGAAAACATAGT
*
86835072 -GTTTTGAAAACAGTTGT
1 AGTTTTGAAAACA-TAGT
86835089 AGTTTTGGAAAAC
1 AGTTTT-GAAAAC
86835102 TGCGATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 11 0.44
17 3 0.12
18 5 0.20
19 6 0.24
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (17 bp):
AGTTTTGAAAACATAGT
Found at i:86836134 original size:41 final size:41
Alignment explanation
Indices: 86836073--86836191 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
86836063 TAAAAGCCAC
* * *
86836073 CGGTGGATCCACGATTGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* *
86836114 CGGTGGATCTATGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
86836155 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
86836192 GAATTTCTTC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:86836485 original size:27 final size:27
Alignment explanation
Indices: 86836453--86836737 Score: 138
Period size: 27 Copynumber: 10.7 Consensus size: 27
86836443 TTGGTAAATA
*
86836453 TACAAACCAAGGGTATTTCTGTAATTT
1 TACAAATCAAGGGTATTTCTGTAATTT
* * *
86836480 TCCAAATTAAGGGCA-TTCTAGTAATTT
1 TACAAATCAAGGGTATTTCT-GTAATTT
* * *
86836507 TCCAAATCAGGGGCATTT-TGATAATTT
1 TACAAATCAAGGGTATTTCTG-TAATTT
* * *
86836534 TAAAAATCAAAGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCTGTAATTT
* * *
86836561 TACAAGTTAA-GGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCTGTAATTT
* ** * *
86836587 TATAGGTCGAGGGTATTT-AGTAATTT
1 TACAAATCAAGGGTATTTCTGTAATTT
* * * *
86836613 CAAAAATCAGGGGCATTT-TGCTAA-TT
1 TACAAATCAAGGGTATTTCTG-TAATTT
* *
86836639 TACAAACCAGGGGTATTT-TGGTAATTT
1 TACAAATCAAGGGTATTTCT-GTAATTT
* * * *
86836666 TGCTAATCGAGGGTATTT-TGGTAGTTT
1 TACAAATCAAGGGTATTTCT-GTAATTT
** * * *
86836693 TGTAAACCAAGCGTATTT-AGTAATTT
1 TACAAATCAAGGGTATTTCTGTAATTT
** *
86836719 TGTAAACCAAGGGTATTTC
1 TACAAATCAAGGGTATTTC
86836738 AATAATTCTA
Statistics
Matches: 203, Mismatches: 46, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
26 89 0.44
27 111 0.55
28 3 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCTGTAATTT
Found at i:86836757 original size:26 final size:27
Alignment explanation
Indices: 86836733--86836832 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
86836723 AACCAAGGGT
*
86836733 ATTTCAATAATTCTATCCTATAGGGGC
1 ATTTCAGTAATTCTATCCTATAGGGGC
* *
86836760 A-TTCAGTAATTCTATGCTACAGGGGC
1 ATTTCAGTAATTCTATCCTATAGGGGC
* * *
86836786 ATTTTAGTAATTTTA-CCTTATAGGGGT
1 ATTTCAGTAATTCTATCC-TATAGGGGC
* *
86836813 ATTTCAGTAATACTAGCCTA
1 ATTTCAGTAATTCTATCCTA
86836833 CAGATATGAG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
26 24 0.41
27 33 0.56
28 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (27 bp):
ATTTCAGTAATTCTATCCTATAGGGGC
Found at i:86850178 original size:46 final size:46
Alignment explanation
Indices: 86850111--86850280 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
86850101 AACCCGCCCC
*
86850111 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
86850157 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
86850205 TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
86850250 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
86850281 AGATGCTCAA
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 57 0.56
47 27 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:86850225 original size:93 final size:93
Alignment explanation
Indices: 86850116--86850286 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
86850106 GCCCCTAAGT
* * *
86850116 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86850181 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
*
86850209 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86850274 CGAGTTCAGATGC
66 CGAGTTCAGATGC
86850287 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:86869025 original size:18 final size:17
Alignment explanation
Indices: 86868979--86869017 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
86868969 TTTTAAAAGG
86868979 AAAACAAATGAATATTA
1 AAAACAAATGAATATTA
*
86868996 AAAACAAATGAATCTTA
1 AAAACAAATGAATATTA
86869013 AAAAC
1 AAAAC
86869018 TTAATGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATATTA
Found at i:86874394 original size:21 final size:21
Alignment explanation
Indices: 86874361--86874419 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
86874351 GTAGGGGTCT
* * *
86874361 ACACGCTCATGTGGAGGCCTC
1 ACACGCCCGTGTGGAGGCCCC
*
86874382 ACACGCCCGTGTGAAGGCCCC
1 ACACGCCCGTGTGGAGGCCCC
* * *
86874403 ATATGCCAGTGTGGAGG
1 ACACGCCCGTGTGGAGG
86874420 GGGCACACGC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (21 bp):
ACACGCCCGTGTGGAGGCCCC
Found at i:86878431 original size:42 final size:43
Alignment explanation
Indices: 86878350--86878452 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
86878340 TCCTAGATGT
* * * *
86878350 GGTCTTACATGTAATCAAATATCGATGTCACTGTCCCAGATAG
1 GGTCTTACACGAAATCAAATATCGATGTCAATGTCCCAGACAG
* *
86878393 GGTCTTACACGAAATCATATA-CGATG-CTAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGTC-AATGTCCCAGACAG
*
86878435 GGTCTTACGCGTAAATCA
1 GGTCTTACACG-AAATCA
86878453 CAAATTGATG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
41 1 0.02
42 26 0.51
43 24 0.47
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGTCAATGTCCCAGACAG
Found at i:86880911 original size:21 final size:21
Alignment explanation
Indices: 86880882--86880921 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
86880872 TTACCAAAAA
86880882 GTGTGTTGTACTAAATTGAAT
1 GTGTGTTGTACTAAATTGAAT
* * *
86880903 GTGTTTTGTATTGAATTGA
1 GTGTGTTGTACTAAATTGA
86880922 GTTAAATTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.47
Consensus pattern (21 bp):
GTGTGTTGTACTAAATTGAAT
Found at i:86887994 original size:7 final size:7
Alignment explanation
Indices: 86887968--86888011 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
86887958 AAATAAGACC
86887968 CCCTCATT
1 CCCTCA-T
*
86887976 CCCTTAT
1 CCCTCAT
86887983 CCCTCAT
1 CCCTCAT
*
86887990 TCCTCAT
1 CCCTCAT
86887997 CCCTCAT
1 CCCTCAT
*
86888004 CCTTCAT
1 CCCTCAT
86888011 C
1 C
86888012 ATTCTCTCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
7 26 0.84
8 5 0.16
ACGTcount: A:0.14, C:0.50, G:0.00, T:0.36
Consensus pattern (7 bp):
CCCTCAT
Found at i:86888005 original size:21 final size:22
Alignment explanation
Indices: 86887969--86888010 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
86887959 AATAAGACCC
*
86887969 CCTCATTCCCTTATCCCTCATT
1 CCTCATTCCCTCATCCCTCATT
*
86887991 CCTCA-TCCCTCATCCTTCAT
1 CCTCATTCCCTCATCCCTCAT
86888011 CATTCTCTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.14, C:0.48, G:0.00, T:0.38
Consensus pattern (22 bp):
CCTCATTCCCTCATCCCTCATT
Found at i:86888010 original size:14 final size:15
Alignment explanation
Indices: 86887968--86888011 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
86887958 AAATAAGACC
86887968 CCCTCATTCCCTT-AT
1 CCCTCATT-CCTTCAT
86887983 CCCTCATTCC-TCAT
1 CCCTCATTCCTTCAT
86887997 CCCTCA-TCCTTCAT
1 CCCTCATTCCTTCAT
86888011 C
1 C
86888012 ATTCTCTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.15
14 15 0.56
15 8 0.30
ACGTcount: A:0.14, C:0.50, G:0.00, T:0.36
Consensus pattern (15 bp):
CCCTCATTCCTTCAT
Found at i:86896012 original size:165 final size:165
Alignment explanation
Indices: 86895737--86896060 Score: 531
Period size: 165 Copynumber: 2.0 Consensus size: 165
86895727 TTCCAGAAGC
* *
86895737 TCCTTTCGTTTCGAGTCCAAAAACAATTGGCTAATGTATTTCTTCCTAAATTCTTCTTGGAAGAA
1 TCCTTTCATTTCGAGTCCAAAAACAATTGGCTAATGTATTTCTTCCTAAATTCTGCTTGGAAGAA
* *
86895802 ATCCCAAGTAATATTCTCTTTCGGCACTACCAAGGATAAAGTCTTCCACCAATTGTATGCAGTGT
66 ATCCCAAGTAATATTCTCTTTCGACACTACCAAGGATAAAGTCTTCCACCAATTGTATGCAGTAT
* * *
86895867 CTTTCAAAAGGGACACAGTGCACTTCAAACATTTT
131 CCTCCAAAAGGGACACAGCGCACTTCAAACATTTT
*
86895902 TCCTTTCATTTCGAGTCCAAAAACCATTGGCTAATGTATTTCTTCCTAAATTCTGCTTGGAAGAA
1 TCCTTTCATTTCGAGTCCAAAAACAATTGGCTAATGTATTTCTTCCTAAATTCTGCTTGGAAGAA
* * * * *
86895967 ATTCGAAGTAATATTCTCTTTTGACACTACTAAGGATATAGTCTTCCACCAATTGTATGCAGTAT
66 ATCCCAAGTAATATTCTCTTTCGACACTACCAAGGATAAAGTCTTCCACCAATTGTATGCAGTAT
86896032 CCTCCAAAAGGGACACAGCGCACTTCAAA
131 CCTCCAAAAGGGACACAGCGCACTTCAAA
86896061 AATTCTTTGG
Statistics
Matches: 146, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
165 146 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33
Consensus pattern (165 bp):
TCCTTTCATTTCGAGTCCAAAAACAATTGGCTAATGTATTTCTTCCTAAATTCTGCTTGGAAGAA
ATCCCAAGTAATATTCTCTTTCGACACTACCAAGGATAAAGTCTTCCACCAATTGTATGCAGTAT
CCTCCAAAAGGGACACAGCGCACTTCAAACATTTT
Found at i:86897823 original size:19 final size:19
Alignment explanation
Indices: 86897799--86897835 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
86897789 AATCAATGAG
86897799 TTAGTCACATAATCATGTT
1 TTAGTCACATAATCATGTT
86897818 TTAGTCACATAATCATGT
1 TTAGTCACATAATCATGT
86897836 ATCATGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (19 bp):
TTAGTCACATAATCATGTT
Found at i:86898255 original size:41 final size:41
Alignment explanation
Indices: 86898210--86898470 Score: 362
Period size: 41 Copynumber: 6.4 Consensus size: 41
86898200 TGTTTTACCA
* * ** *
86898210 AAAACGCCGCTAAAAA-CAGAGCAATAGCGGCATTTTTTGTT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGC-GCTTTTGGT
* * * **
86898251 AAAACGCCGCTAAAAATCGGAGCATTAGTGGCACTTTTTAT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGT
* *
86898292 AAAACGCCGCTAAAAACCGGATCATTAGCGGCGCTTTTTGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGT
*
86898333 AAAACGCCGCTAAAAACCGGATCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGT
*
86898374 AAAACGCCGCTAAAAACCGGATCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGT
*
86898415 AAAACGCTGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGT
*
86898456 AAAACGTCGCTAAAA
1 AAAACGCCGCTAAAA
86898471 GTCATATAAC
Statistics
Matches: 202, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 190 0.94
42 12 0.06
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCGGAGCATTAGCGGCGCTTTTGGT
Found at i:86898559 original size:23 final size:22
Alignment explanation
Indices: 86898512--86898559 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
86898502 AAAAAATCAT
* *
86898512 AAACACTAATCTATAATCCTTA
1 AAACACTAAACTATAAACCTTA
*
86898534 AAACACTAAACTCCTAAACCTTA
1 AAACACTAAACT-ATAAACCTTA
86898557 AAA
1 AAA
86898560 AATCTTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (22 bp):
AAACACTAAACTATAAACCTTA
Found at i:86898916 original size:15 final size:15
Alignment explanation
Indices: 86898877--86898928 Score: 72
Period size: 14 Copynumber: 3.6 Consensus size: 15
86898867 TTAATTATCA
86898877 TTAT-AGTTTAAGGT
1 TTATGAGTTTAAGGT
*
86898891 TTATG-GTTTAAGCT
1 TTATGAGTTTAAGGT
*
86898905 ATATGAGTTTAAGGT
1 TTATGAGTTTAAGGT
86898920 TTATGAGTT
1 TTATGAGTT
86898929 AACTATGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 16 0.50
15 16 0.50
ACGTcount: A:0.27, C:0.02, G:0.23, T:0.48
Consensus pattern (15 bp):
TTATGAGTTTAAGGT
Found at i:86898990 original size:21 final size:20
Alignment explanation
Indices: 86898946--86899018 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 20
86898936 GTTTAAAGGT
*
86898946 GGGTTAAGGGTT-GGGTTTA
1 GGGTTAAGGGTTAGGGGTTA
*
86898965 AGGTT-AGGTGTTAGGGGTTAA
1 GGGTTAAGG-GTTAGGGGTT-A
*
86898986 GGGTTAAGGGTGAGGGGTTTA
1 GGGTTAAGGGTTAGGGG-TTA
*
86899007 GGGTTTAGGGTT
1 GGGTTAAGGGTT
86899019 TAATGTTTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
18 3 0.07
19 7 0.16
20 5 0.12
21 23 0.53
22 5 0.12
ACGTcount: A:0.18, C:0.00, G:0.48, T:0.34
Consensus pattern (20 bp):
GGGTTAAGGGTTAGGGGTTA
Found at i:86898991 original size:14 final size:14
Alignment explanation
Indices: 86898946--86899036 Score: 69
Period size: 14 Copynumber: 6.6 Consensus size: 14
86898936 GTTTAAAGGT
86898946 GGGTTAAGGGTT-G
1 GGGTTAAGGGTTAG
*
86898959 GGTTTAA-GGTTAG
1 GGGTTAAGGGTTAG
* * *
86898972 GTGTTAGGGGTTAA
1 GGGTTAAGGGTTAG
*
86898986 GGGTTAAGGGTGAG
1 GGGTTAAGGGTTAG
*
86899000 GGGTTTAGGGTTTAG
1 GGGTTAAGGG-TTAG
* * *
86899015 GGTTTAATGTTTAG
1 GGGTTAAGGGTTAG
*
86899029 GGATTAAG
1 GGGTTAAG
86899037 AGTTTAGGGT
Statistics
Matches: 58, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
12 4 0.07
13 11 0.19
14 34 0.59
15 9 0.16
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (14 bp):
GGGTTAAGGGTTAG
Found at i:86899050 original size:7 final size:7
Alignment explanation
Indices: 86898946--86899050 Score: 58
Period size: 7 Copynumber: 15.1 Consensus size: 7
86898936 GTTTAAAGGT
*
86898946 GGGTTAA
1 GGGTTTA
86898953 GGG-TT-
1 GGGTTTA
86898958 GGGTTTA
1 GGGTTTA
*
86898965 AGG-TTA
1 GGGTTTA
86898971 -GGTGTTA
1 GGGT-TTA
*
86898978 GGGGTTAA
1 -GGGTTTA
*
86898986 GGGTTAA
1 GGGTTTA
*
86898993 GGG-TGA
1 GGGTTTA
86898999 GGGGTTTA
1 -GGGTTTA
86899007 GGGTTTA
1 GGGTTTA
86899014 GGGTTTA
1 GGGTTTA
**
86899021 ATGTTTA
1 GGGTTTA
*
86899028 GGGATTAA
1 GGG-TTTA
*
86899036 GAGTTTA
1 GGGTTTA
86899043 GGGTTTA
1 GGGTTTA
86899050 G
1 G
86899051 ATTAGTTAGT
Statistics
Matches: 76, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
5 5 0.07
6 8 0.11
7 51 0.67
8 9 0.12
9 3 0.04
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (7 bp):
GGGTTTA
Found at i:86899217 original size:22 final size:22
Alignment explanation
Indices: 86899192--86899234 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86899182 GAGTTATTAT
86899192 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGTTTAT-GATTTATGGG
*
86899214 TTTAGGGTTTATGATTTATGG
1 TTTAAGGTTTATGATTTATGG
86899235 TTATGTAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
TTTAAGGTTTATGATTTATGGG
Found at i:86899450 original size:23 final size:24
Alignment explanation
Indices: 86899410--86899455 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
86899400 CATATTTCAG
* * *
86899410 TTAAAATAATCAATATT-CAAAAT
1 TTAAAAAAATAAAAATTCCAAAAT
86899433 TTAAAAAAATAAAAATTCCAAAA
1 TTAAAAAAATAAAAATTCCAAAA
86899456 AATAATAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (24 bp):
TTAAAAAAATAAAAATTCCAAAAT
Found at i:86899525 original size:22 final size:20
Alignment explanation
Indices: 86899474--86899525 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
86899464 TCTCAACACA
86899474 AAAATTTTAAAAGAAAAAAAT
1 AAAA-TTTAAAAGAAAAAAAT
*
86899495 -AGATGTTAAAATGGAAAAAAAT
1 AAAAT-TTAAAA--GAAAAAAAT
86899517 AAAATTTAA
1 AAAATTTAA
86899526 CAATAGTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
19 1 0.04
20 8 0.32
22 13 0.52
23 3 0.12
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (20 bp):
AAAATTTAAAAGAAAAAAAT
Found at i:86902423 original size:30 final size:30
Alignment explanation
Indices: 86902387--86902447 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
86902377 GTCTTCCAAA
* *
86902387 TAAGTTCCGTGTTATATCAACTCGTGAATT
1 TAAGTTCCATGCTATATCAACTCGTGAATT
*
86902417 TAAGTTCTATGCTATATCAACTCGTGAATT
1 TAAGTTCCATGCTATATCAACTCGTGAATT
86902447 T
1 T
86902448 TGATCATGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (30 bp):
TAAGTTCCATGCTATATCAACTCGTGAATT
Found at i:86903900 original size:21 final size:21
Alignment explanation
Indices: 86903874--86903914 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
86903864 ACTTAGAGCG
86903874 GAGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
86903895 GAGGCAGCAGCGAGGGAGGC
1 GAGGCAGCAGCGAGGGAGGC
86903915 GGAGCAGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.20, G:0.54, T:0.00
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:86904370 original size:42 final size:43
Alignment explanation
Indices: 86904212--86904440 Score: 264
Period size: 43 Copynumber: 5.3 Consensus size: 43
86904202 ACTTGGCAAC
* * * *
86904212 TTAGCGGCGTTTTTTAAAAAAGTGCCGCGAAAGGACCTGATCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCGAAAGGTCCTGGTCT
* * ** * * *
86904255 TTAGTGGCGTTTTTTATAAAAGCGCTGTAAAAAGTCTTGATCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCGAAAGGTCCTGGTCT
* *
86904298 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCGAAAGGTCCTGGTCT
* *
86904341 TTAGCGGCG-TTTTTATAAAAGCGCCGCGAAAAGTCTTGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCGAAAGGTCCTGGTCT
* * *
86904383 TTAGCGGCATTTTTTA-AAATAGCGCCGCTAAAGGTCCTAGTCT
1 TTAGCGGCGTTTTTTATAAA-AGCGCCGCGAAAGGTCCTGGTCT
*
86904426 TTAGCGGCATTTTTT
1 TTAGCGGCGTTTTTT
86904441 TCTAAACAAC
Statistics
Matches: 159, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
42 40 0.25
43 119 0.75
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTATAAAAGCGCCGCGAAAGGTCCTGGTCT
Found at i:86904374 original size:85 final size:85
Alignment explanation
Indices: 86904212--86904439 Score: 321
Period size: 85 Copynumber: 2.7 Consensus size: 85
86904202 ACTTGGCAAC
* * * *
86904212 TTAGCGGCGTTTTTTAAAAAAGTGCCGCGAAAGGACCTGATCTTTAGTGGCGTTTTTTATAAAAG
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCTTTAGCGGCG-TTTTTATAAAAG
* *
86904277 CGCTGTAAAAAGTCTTGATCT
65 CGCCGCAAAAAGTCTTGATCT
*
86904298 TTAGCGGCGTTTTTTAAAAAAGCGCTGCGAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAGC
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAGC
* *
86904363 GCCGCGAAAAGTCTTGGTCT
66 GCCGCAAAAAGTCTTGATCT
* * * * *
86904383 TTAGCGGCATTTTTTAAAATAGCGCCGCTAAAGGTCCTAGTCTTTAGCGGCATTTTT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCTTTAGCGGCGTTTTT
86904440 TTCTAAACAA
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 80 0.63
86 47 0.37
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (85 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAGC
GCCGCAAAAAGTCTTGATCT
Found at i:86917384 original size:51 final size:51
Alignment explanation
Indices: 86917222--86917396 Score: 257
Period size: 52 Copynumber: 3.5 Consensus size: 51
86917212 AGTGACTCAG
*
86917222 GTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAG-TTTGGTCACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACAA
86917271 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCACAA
* * *
86917323 GTGTGGTACTATGTGAACGTCACTTTGTGAAGAAGGTAGCTTTGAGT-ACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTG-GTCACAA
* *
86917374 GGGTGGTACTATGTGCAGGCCAC
1 GTGTGGTACTATGTGAAGGCCAC
86917397 CAGGTATCCG
Statistics
Matches: 114, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
49 31 0.27
51 40 0.35
52 43 0.38
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (51 bp):
GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACAA
Found at i:86926320 original size:24 final size:24
Alignment explanation
Indices: 86926293--86926343 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
86926283 TTATTAGTTG
*
86926293 ATACATTAATTCTTGGAAGTTGGC
1 ATACATTAATGCTTGGAAGTTGGC
86926317 ATACATTAATGCTTGGAAGTTGGC
1 ATACATTAATGCTTGGAAGTTGGC
86926341 ATA
1 ATA
86926344 TTGTAGTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (24 bp):
ATACATTAATGCTTGGAAGTTGGC
Found at i:86926854 original size:29 final size:29
Alignment explanation
Indices: 86926788--86926855 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
86926778 GTCTACTGGC
*
86926788 CGTGTGTGACATACGGGCTCACACACAAT
1 CGTGTGTGGCATACGGGCTCACACACAAT
*
86926817 CGTGTGTGGCATACGGGCTCACACACGAT
1 CGTGTGTGGCATACGGGCTCACACACAAT
86926846 CGTGTGTGGC
1 CGTGTGTGGC
86926856 CATTTCAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (29 bp):
CGTGTGTGGCATACGGGCTCACACACAAT
Found at i:86931880 original size:48 final size:48
Alignment explanation
Indices: 86931784--86931885 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
86931774 CTAGGCTATC
* *
86931784 GGCATCGAAATGTGATCCCATGTAAGACCATGTCTGGTACATGGCATT
1 GGCATCGAAATGTGATCCCATGTAAGACCATATCAGGTACATGGCATT
** * *
86931832 GGCATCGTTATGTGATCCCATGTAAGACCATATCCAGG-ATATGTCATT
1 GGCATCGAAATGTGATCCCATGTAAGACCATAT-CAGGTACATGGCATT
86931880 GGCATC
1 GGCATC
86931886 TTACTATGTG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 44 0.94
49 3 0.06
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (48 bp):
GGCATCGAAATGTGATCCCATGTAAGACCATATCAGGTACATGGCATT
Found at i:86932785 original size:33 final size:33
Alignment explanation
Indices: 86932748--86932818 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
86932738 ATATGCATGA
86932748 GCCATGTATATAAATGTGTAAGTTCTTATTTAT
1 GCCATGTATATAAATGTGTAAGTTCTTATTTAT
86932781 GCCATGTATATAAATGTGTAAGTTCTTATTTAT
1 GCCATGTATATAAATGTGTAAGTTCTTATTTAT
86932814 GCCAT
1 GCCAT
86932819 TAGGTCGTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (33 bp):
GCCATGTATATAAATGTGTAAGTTCTTATTTAT
Found at i:86937298 original size:49 final size:51
Alignment explanation
Indices: 86937168--86937307 Score: 196
Period size: 51 Copynumber: 2.8 Consensus size: 51
86937158 TCTGTTATGA
* *
86937168 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTTC
* * *
86937219 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATAA-TT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC-GATAACTTC
*
86937268 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTAC
86937308 CAGATAGCTT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 36 0.46
50 3 0.04
51 40 0.51
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTTC
Found at i:86937308 original size:49 final size:50
Alignment explanation
Indices: 86937168--86937313 Score: 206
Period size: 49 Copynumber: 2.9 Consensus size: 50
86937158 TCTGTTATGA
*
86937168 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CGATAACTTC
* * * *
86937219 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GATAACTTC
86937268 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GATA
86937314 GCTTTGGCTA
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 41 0.49
50 3 0.04
51 40 0.48
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGATAACTTC
Found at i:86942641 original size:51 final size:49
Alignment explanation
Indices: 86942560--86942703 Score: 189
Period size: 51 Copynumber: 2.9 Consensus size: 49
86942550 TGTTATGAGG
* *
86942560 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-GA
* * * * *
86942611 TCACGTGTGTAGTACTATGTGCAGGCTACTAGGTGTACCGGATAATTGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGA
* *
86942660 TCGCAAGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
86942704 GCTTTGGCTA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 39 0.48
50 2 0.02
51 40 0.49
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGA
Found at i:86947865 original size:48 final size:48
Alignment explanation
Indices: 86947783--86948013 Score: 212
Period size: 48 Copynumber: 4.9 Consensus size: 48
86947773 TAGGGTTATG
* *
86947783 TGTGATCCCATGTAAGACCATGTCTGAGATATGGCATTGGCATCGGGA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGGA
*
86947831 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC--GA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGGA
** * **
86947877 TGTGTAATTTCATGTAAGACCATAG-CTGGG-CTAT--CA---GCATTGAAA
1 TGTG--ATCCCATGTAAGACCAT-GTCTGGGAC-ATGGCATTGGCATCGGGA
* * **
86947922 GGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGTTA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGGA
* * *
86947970 TGTGATCCCATGTAAGACCATATTTGGGATAT-GCGATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGC-ATTGGCATC
86948014 TTACTATGTG
Statistics
Matches: 151, Mismatches: 18, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
43 26 0.17
44 1 0.01
45 6 0.04
46 7 0.05
47 3 0.02
48 107 0.71
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGGGA
Found at i:86977464 original size:119 final size:121
Alignment explanation
Indices: 86977201--86977465 Score: 326
Period size: 119 Copynumber: 2.2 Consensus size: 121
86977191 GCTCCTCGTT
*
86977201 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
86977265 AATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCAC
65 AATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATATAGTAACTAGCAC
* * * * *
86977322 CAATGCCTTCGGGAATTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC-G
* * ** * *
86977385 AA-TTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-
65 AATTTAGTAACTCGCACAAATGCCTTCGGGA-ATTAACCCGGATATAGTAAC-TAGCAC
86977441 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
86977466 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.02
119 66 0.54
120 49 0.40
121 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATATAGTAACTAGCAC
Found at i:86977465 original size:40 final size:40
Alignment explanation
Indices: 86977201--86977465 Score: 313
Period size: 40 Copynumber: 6.7 Consensus size: 40
86977191 GCTCCTCGTT
* *
86977201 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
86977241 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
86977281 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
86977321 CCAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
86977361 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
86977400 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
86977441 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86977466 CATCATTCAA
Statistics
Matches: 200, Mismatches: 19, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 30 0.15
40 156 0.78
41 12 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:86985398 original size:39 final size:40
Alignment explanation
Indices: 86985227--86985412 Score: 284
Period size: 40 Copynumber: 4.6 Consensus size: 40
86985217 AGCCTGGTTA
86985227 TAGTAACTCGCACAAAAATGCCTTCGGGAATTAACCCGGATT
1 TAGTAACTCGCAC--AAATGCCTTCGGGAATTAACCCGGATT
86985269 TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
*
86985309 TAGTAACTCGCACCAATGCCTTCGGGAATTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
* * * * *
86985349 TAGTAACTCGCACCAATGCCTTTGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
*
86985388 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
86985413 ATCTTAGTCC
Statistics
Matches: 136, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 32 0.24
40 91 0.67
42 13 0.10
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATT
Found at i:86985452 original size:119 final size:121
Alignment explanation
Indices: 86985227--86985465 Score: 270
Period size: 119 Copynumber: 2.0 Consensus size: 121
86985217 AGCCTGGTTA
*
86985227 TAGTAACTCGCACAAAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTC
1 TAGTAACTCGCAC-AAAATGCCTTCGGGAATTAACCCGGAATTAGTAACTCGCACAAATGCCTTC
* * * *
86985292 GGGAATTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGAATTAACCCGGATT
65 GGGAATTAACCCGGATATAGTAACTAGCACCAAAGCATTCGGGAATTAACCCGGATT
* * * * *
86985349 TAGTAACTCGCAC-CAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-
1 TAGTAACTCGCACAAAATGCCTTCGGGAATTAACCCGGAATTAGTAACTCGCACAAATGCCTTCG
* ** * * * *
86985411 GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCATTCGGGACTTAGCCCGGA
66 GGA-ATTAACCCGGATATAGTAAC-TAGCACCAAAGCATTCGGGAATTAACCCGGA
86985466 CATCATTCAA
Statistics
Matches: 98, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
118 3 0.03
119 67 0.68
120 15 0.15
122 13 0.13
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (121 bp):
TAGTAACTCGCACAAAATGCCTTCGGGAATTAACCCGGAATTAGTAACTCGCACAAATGCCTTCG
GGAATTAACCCGGATATAGTAACTAGCACCAAAGCATTCGGGAATTAACCCGGATT
Found at i:86999017 original size:45 final size:45
Alignment explanation
Indices: 86998967--86999057 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
86998957 CTGCTGATTG
*
86998967 TCTTGGTTTTCAGCCATCTATTCGGTAGGGGGTTGAGTATCGTCC
1 TCTTGGTTTTCAGCCATCTATTCGGTAGGGGCTTGAGTATCGTCC
86999012 TCTTGGTTTTCAGCCATCTATTCGGTAGGGGCTTGAGTATCGTCC
1 TCTTGGTTTTCAGCCATCTATTCGGTAGGGGCTTGAGTATCGTCC
86999057 T
1 T
86999058 TTTACTTGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.38
Consensus pattern (45 bp):
TCTTGGTTTTCAGCCATCTATTCGGTAGGGGCTTGAGTATCGTCC
Found at i:87010511 original size:22 final size:22
Alignment explanation
Indices: 87010484--87010528 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
87010474 AAACTATTAA
*
87010484 TATAATTAATTTTAATTAATTT
1 TATAATAAATTTTAATTAATTT
* *
87010506 TATAATAAATTTTGATTATTTT
1 TATAATAAATTTTAATTAATTT
87010528 T
1 T
87010529 GATAGATTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TATAATAAATTTTAATTAATTT
Found at i:87011498 original size:21 final size:20
Alignment explanation
Indices: 87011472--87011511 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
87011462 CGGGCCCAGA
*
87011472 AATAAATCCAAAAACAAAAAT
1 AATAAACCCAAAAA-AAAAAT
87011493 AATAAACCCCAAAAAAAAA
1 AATAAA-CCCAAAAAAAAA
87011512 CGAAGTCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.72, C:0.17, G:0.00, T:0.10
Consensus pattern (20 bp):
AATAAACCCAAAAAAAAAAT
Found at i:87011651 original size:14 final size:15
Alignment explanation
Indices: 87011632--87011687 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
87011622 AATCTTCAAT
87011632 GATATG-CAATCTTA
1 GATATGACAATCTTA
87011646 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
87011663 GATATGATTTCAATCTTA
1 GATATGA---CAATCTTA
87011681 GATATGA
1 GATATGA
87011688 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:87011658 original size:17 final size:17
Alignment explanation
Indices: 87011638--87011701 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
87011628 CAATGATATG
87011638 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
87011655 CAATCTTAGATATGATTT
1 CAATCTTAGATATGA-TA
87011673 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
87011690 TGCAATCTTAGA
1 --CAATCTTAGA
87011702 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.38
18 16 0.38
19 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:87011678 original size:18 final size:18
Alignment explanation
Indices: 87011638--87011701 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
87011628 CAATGATATG
87011638 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
87011655 CAATCTTAGATATGATTT
1 CAATCTTAGATATGATTA
*
87011673 CAATCTTAGATATGATATG
1 CAATCTTAGATATGAT-TA
87011692 CAATCTTAGA
1 CAATCTTAGA
87011702 AGATATGATT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 15 0.35
18 17 0.40
19 11 0.26
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:87011708 original size:17 final size:19
Alignment explanation
Indices: 87011630--87011701 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
87011620 ATAATCTTCA
87011630 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
87011649 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
87011666 ATGAT-TTCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
87011684 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
87011702 AGATATGATT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
17 16 0.33
18 16 0.33
19 17 0.35
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:87011727 original size:22 final size:22
Alignment explanation
Indices: 87011630--87011710 Score: 69
Period size: 17 Copynumber: 4.2 Consensus size: 22
87011620 ATAATCTTCA
87011630 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
87011649 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
87011666 ATGAT-TTCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
87011684 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
87011706 ATGAT
1 ATGAT
87011711 TTTGTAATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 9
0.85 0.02 0.14
Matches are distributed among these distances:
17 16 0.29
18 16 0.29
19 14 0.25
22 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:87012016 original size:18 final size:17
Alignment explanation
Indices: 87011993--87012026 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
87011983 TGTCCCTGAT
*
87011993 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
87012011 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
87012027 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:87020228 original size:44 final size:44
Alignment explanation
Indices: 87020171--87020341 Score: 173
Period size: 44 Copynumber: 3.9 Consensus size: 44
87020161 ACTCTAAGAT
* *
87020171 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGCTCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGTA
* *
87020215 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGTA
* * * * * * **
87020259 GATTTGGTGTCTCTGTACTGTCAAAGAACAAATCGAAGA-AACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGTA
* ** * *
87020302 GATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGA
1 GATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCAAAGA
87020342 CATAGCAGAT
Statistics
Matches: 105, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
43 16 0.15
44 89 0.85
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGTA
Found at i:87020281 original size:88 final size:88
Alignment explanation
Indices: 87020171--87020341 Score: 209
Period size: 88 Copynumber: 1.9 Consensus size: 88
87020161 ACTCTAAGAT
* * ** ** ** **
87020171 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGCTCAAAGATAGTAGATTTGGCATCTCTGTATT-G
1 GATTTGGCGTCTCTGTACTGTCAAAGAACAAATCAAAGA-AACAGATTTGGCATCTCCATATTCG
*
87020235 TCAGAGAGCAGATCGAAGATAGTA
65 ACAGAGAGCAGATCGAAGATAGTA
* *
87020259 GATTTGGTGTCTCTGTACTGTCAAAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
1 GATTTGGCGTCTCTGTACTGTCAAAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGA
87020324 CAGAGAGCAGATCGAAGA
66 CAGAGAGCAGATCGAAGA
87020342 CATAGCAGAT
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
87 19 0.28
88 50 0.72
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (88 bp):
GATTTGGCGTCTCTGTACTGTCAAAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGA
CAGAGAGCAGATCGAAGATAGTA
Found at i:87020510 original size:40 final size:41
Alignment explanation
Indices: 87020465--87020564 Score: 112
Period size: 44 Copynumber: 2.4 Consensus size: 41
87020455 TTTACACTGA
* * *
87020465 AGCAAATCTAAGAT-GATTTGACGTCTCTGTATTGTTAGAG
1 AGCAAATCAAAGATAGATTTGACATCTCTGTATTGTCAGAG
*
87020505 AGCAAATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
1 AGCAAATCAAAGAT---AGATTTGACATCTCTGTATTGTCAGAG
* *
87020549 AGCAGATCGAAGATAG
1 AGCAAATCAAAGATAG
87020565 TAAATTTGGT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
40 13 0.26
41 2 0.04
44 35 0.70
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (41 bp):
AGCAAATCAAAGATAGATTTGACATCTCTGTATTGTCAGAG
Found at i:87020538 original size:44 final size:44
Alignment explanation
Indices: 87020479--87020622 Score: 164
Period size: 44 Copynumber: 3.3 Consensus size: 44
87020469 AATCTAAGAT
* * * *
87020479 GATTTGACGTCTCTGTATTGTTAGAGAGCAAATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGATAGCA
* *
87020523 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGATAGCA
* ** * * * *
87020567 AATTTGGTGTCTCTGTACTATCAGAGAACAAATCGAAGA-AACA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGATAGCA
87020610 GATTTGGCATCTC
1 GATTTGGCATCTC
87020623 CATATTTGAC
Statistics
Matches: 82, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
43 12 0.15
44 70 0.85
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGATAGCA
Found at i:87020583 original size:88 final size:88
Alignment explanation
Indices: 87020487--87020649 Score: 211
Period size: 88 Copynumber: 1.9 Consensus size: 88
87020477 ATGATTTGAC
* * * * * ** *
87020487 GTCTCTGTATTGTTAGAGAGCAAATCAAAGATAGCAGATTTGGCATCTCTGTA-TTGTCAGAGAG
1 GTCTCTGTACTATCAGAGAACAAATCAAAGA-AACAGATTTGGCATCTCCATATTTGACAGAGAG
87020551 CAGATCGAAGATAGTAAATTTGGT
65 CAGATCGAAGATAGTAAATTTGGT
* * *
87020575 GTCTCTGTACTATCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGTGAGC
1 GTCTCTGTACTATCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTTGACAGAGAGC
87020640 AGATCGAAGA
66 AGATCGAAGA
87020650 CATAGCAGAT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
87 18 0.29
88 45 0.71
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (88 bp):
GTCTCTGTACTATCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTTGACAGAGAGC
AGATCGAAGATAGTAAATTTGGT
Found at i:87020597 original size:308 final size:308
Alignment explanation
Indices: 87020029--87021164 Score: 1743
Period size: 308 Copynumber: 3.6 Consensus size: 308
87020019 GTAATAGGCT
* * *
87020029 GAAGACATAGCAGATCTAACCTTCGAATGTTTTTGCATCGAACCAGATCCTAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCAT
* ** *
87020094 CCTTGCATTTACAAGGAGCAGATTGAAGACATAGCATATTTGGCTTTCACGTGTTTACGCTGAAG
66 CCTTGCGTTTACAAGGAGCAGATCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
* * ** *
87020159 CAACTCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGTAGCTCAAAGATAGTAGATTTGGCA
131 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCAAAGATAGCAGATTTGGCA
* * *
87020224 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATTTGGTGTCTCTGTACTGTCAAAGAACA
196 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
*
87020289 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATC
261 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
*
87020337 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCTAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCAT
* *
87020402 CCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACACTGAAG
66 CCTTGCGTTTACAAGGAGCAGATCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
* *
87020467 CAAATCTAAGATGATTTGACGTCTCTGTATTGTTAGAGAGCAAATCAAAGATAGCAGATTTGGCA
131 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCAAAGATAGCAGATTTGGCA
87020532 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
196 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
* *
87020597 AATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGTGAGCAGATC
261 AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
87020645 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCAT
** * *
87020710 CCTTATGTTTACAAGGAGCAGAGCAAAGATATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
66 CCTTGCGTTTACAAGGAGCAGATCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
* *
87020775 CAAATCTAAGATGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAAATAGCAGATCGAAAA
131 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTC--AGAG-AG--C--AAAT--C--A---AAGA
* **
87020840 TAGTAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGT
182 TAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGT
*
87020905 ACTATCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
247 ACTATCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
** * *
87020967 GAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGAAT
1 GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCAT
87021032 CCTTGCGTTTACAAGGAGCAGATCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
66 CCTTGCGTTTACAAGGAGCAGATCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
* * * * * * *
87021097 CAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCCAAGA-AACAGATTTGGTA
131 CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCAAAGATAGCAGATTTGGCA
87021161 TCTC
196 TCTC
87021165 CATATTCGAC
Statistics
Matches: 758, Mismatches: 56, Indels: 29
0.90 0.07 0.03
Matches are distributed among these distances:
307 14 0.02
308 444 0.59
310 4 0.01
311 2 0.00
313 2 0.00
315 8 0.01
317 2 0.00
319 2 0.00
320 4 0.01
322 276 0.36
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (308 bp):
GAAGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCAT
CCTTGCGTTTACAAGGAGCAGATCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
CAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCAAAGATAGCAGATTTGGCA
TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAGAACA
AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
Found at i:87020832 original size:14 final size:14
Alignment explanation
Indices: 87020813--87020847 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
87020803 ATTGTCAGAG
87020813 AGCAGATCAAAAAT
1 AGCAGATCAAAAAT
*
87020827 AGCAGATCGAAAAT
1 AGCAGATCAAAAAT
*
87020841 AGTAGAT
1 AGCAGAT
87020848 TTGGTGTCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.17
Consensus pattern (14 bp):
AGCAGATCAAAAAT
Found at i:87020894 original size:44 final size:44
Alignment explanation
Indices: 87020827--87020915 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
87020817 GATCAAAAAT
* * *
87020827 AGCAGATCGAAAATAGTAGATTTGGTGTCTCTGTATTGTCAGAG
1 AGCAGATCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAG
*
87020871 AGCAGATCGAAGATAGTAAATTTGGTGTCTCTGTACTATCAGAG
1 AGCAGATCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAG
87020915 A
1 A
87020916 ACAAATCAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (44 bp):
AGCAGATCGAAAATAGTAAATTTGGTGTCTCTGTACTATCAGAG
Found at i:87021107 original size:322 final size:322
Alignment explanation
Indices: 87020517--87021135 Score: 1076
Period size: 322 Copynumber: 1.9 Consensus size: 322
87020507 CAAATCAAAG
87020517 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTG
* * *
87020582 TACTATCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGTGAGCAGATCGA
66 TACTATCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
** *
87020647 AGACATAGCAGATCTAACCTTCGGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCATCC
131 AGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGAATCC
* *
87020712 TTATGTTTACAAGGAGCAGAGCAAAGATATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
196 TTACGTTTACAAGGAGCAGAGCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
* *
87020777 AATCTAAGATGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAAATAGCAGATCGAAA
261 AATCTAAGATGATTTGGCATCTCTATACTGTCAGAGAGCAGATCAAAAATAGCAGATCGAAA
* **
87020839 ATAGTAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTG
1 ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTG
87020904 TACTATCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
66 TACTATCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
*
87020969 AGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGAATCC
131 AGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGAATCC
* *
87021034 TTGCGTTTACAAGGAGCAGATCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
196 TTACGTTTACAAGGAGCAGAGCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
* *
87021099 GATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGA
261 AATCTAAGATGATTTGGCATCTCTATACTGTCAGAGA
87021136 ACAAATCCAA
Statistics
Matches: 279, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
322 279 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (322 bp):
ATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAAATTTGGTGTCTCTG
TACTATCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
AGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGAATCC
TTACGTTTACAAGGAGCAGAGCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
AATCTAAGATGATTTGGCATCTCTATACTGTCAGAGAGCAGATCAAAAATAGCAGATCGAAA
Found at i:87021286 original size:78 final size:77
Alignment explanation
Indices: 87021152--87021368 Score: 274
Period size: 78 Copynumber: 2.8 Consensus size: 77
87021142 CCAAGAAACA
* ** * * * * * *
87021152 GATTTGGTATCTCCATATTCGACGGAGAGCAAATCAAAGACATAGCAGATCAGACCTTCGTTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATGAAAGACATAGCAGAT-TGACCTTCATTGAA
87021217 GCAGATCCAAGAT
65 GCAGATCCAAGAT
*
87021230 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATGAAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATGAAAGACATAGCAGATT-GACCTTCATTGAA
*
87021295 GCAGATCTAAGAT
65 GCAGATCCAAGAT
**
87021308 GATTTGGCATCTCTGTATTAGATTGGGAGCAGATCG-AAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGAT-GAAAGACATAGCAGAT-TGACCTTCAT
87021369 GTGTTTACAT
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 120 0.98
79 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (77 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATGAAAGACATAGCAGATTGACCTTCATTGAAG
CAGATCCAAGAT
Found at i:87021549 original size:89 final size:90
Alignment explanation
Indices: 87021385--87021581 Score: 278
Period size: 89 Copynumber: 2.2 Consensus size: 90
87021375 ACATCGAAGT
*
87021385 AGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATT
1 AGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATT
87021449 TGGAATCTCTGTATTAGAAAGG-GAGC
65 TGGAATCTCTGTATTAG-AAGGTGAGC
**
87021475 AGATTGAAGA-AGCAGATTTGGCATCTCTGTATTAGACGGGGAG-AAGATC-GAGGATAACAGAT
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAA-ATCGGA-GATAACAGAT
* *
87021537 TTGGGATCTCTGTATTAGACGGTGAGC
64 TTGGAATCTCTGTATTAGAAGGTGAGC
87021564 AGATCAAAGATAGCAGAT
1 AGATCAAAGATAGCAGAT
87021582 ATTGCCTTCC
Statistics
Matches: 96, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
88 7 0.07
89 73 0.76
90 16 0.17
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (90 bp):
AGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTT
GGAATCTCTGTATTAGAAGGTGAGC
Found at i:87021581 original size:45 final size:45
Alignment explanation
Indices: 87021308--87021581 Score: 252
Period size: 45 Copynumber: 6.1 Consensus size: 45
87021298 GATCTAAGAT
**
87021308 GATTTGGCATCTCTGTATTAGATTGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAGCA
* * * * * * * *
87021355 GATCTGACCT-TCATGTGTTTACATC--GAAGTAGATCCAAGAT-GACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAG-CA
* * *
87021400 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
* ** *
87021445 GATTTGGAATCTCTGTATTAGAAAGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
* * *
87021489 GATTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAGGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
* * *
87021534 GATTTGGGATCTCTGTATTAGACGGTGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
87021579 GAT
1 GAT
87021582 ATTGCCTTCC
Statistics
Matches: 178, Mismatches: 40, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
43 1 0.01
44 42 0.24
45 106 0.60
46 4 0.02
47 21 0.12
48 4 0.02
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
Found at i:87022028 original size:17 final size:19
Alignment explanation
Indices: 87021931--87022021 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
87021921 ATAATCTTCA
87021931 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
87021950 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
87021969 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
87021986 ATGAT-TGCAATGTTAGAT
1 ATGATATGCAATCTTAGAT
87022004 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
87022022 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 36 0.54
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:87022047 original size:22 final size:22
Alignment explanation
Indices: 87022000--87022044 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
87021990 TTGCAATGTT
*
87022000 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTCAGA
* *
87022022 AGATATGATTTTGTAATCTCAGA
1 AGATATGA-TATGCAATCTCAGA
87022045 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
AGATATGATATGCAATCTCAGA
Found at i:87024919 original size:42 final size:43
Alignment explanation
Indices: 87024824--87024936 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 43
87024814 TATTTGAAAA
* *
87024824 AAACGCTGCTAAAGAACATGACCTTTAGCAGCACTTTTCCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCAGCACTTTTCCCAC
** * *
87024867 AAACATCGCTAAAGATCA-GTACCTTTAGCGGCGC-TTTCCCAC
1 AAACGCCGCTAAAGATCATG-ACCTTTAGCAGCACTTTTCCCAC
87024909 AAACGCCGCTAAAGATCATGACCTTTAG
1 AAACGCCGCTAAAGATCATGACCTTTAG
87024937 TAGAATCACG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 33 0.55
43 27 0.45
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCAGCACTTTTCCCAC
Done.