Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 267 of 356
Found at i:87623609 original size:52 final size:52
Alignment explanation
Indices: 87623547--87623650 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
87623537 TGAATGGGGG
*
87623547 TAGGATTATTCTATTTGATTATACCATGCTCACGTTGATATATGCATTTAAA
1 TAGGATTATTCTATTTGATTATACCATGCTCACGCTGATATATGCATTTAAA
87623599 TAGGATTATTCTATTTGATTATACCATGCTCACGCTGATATATGCATTTAAA
1 TAGGATTATTCTATTTGATTATACCATGCTCACGCTGATATATGCATTTAAA
87623651 CATGTTTCTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.41
Consensus pattern (52 bp):
TAGGATTATTCTATTTGATTATACCATGCTCACGCTGATATATGCATTTAAA
Found at i:87624160 original size:15 final size:15
Alignment explanation
Indices: 87624127--87624156 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
87624117 AGGTATAAAG
87624127 CAAATTTTATAATTT
1 CAAATTTTATAATTT
87624142 CAAATTTT-TAATTT
1 CAAATTTTATAATTT
87624156 C
1 C
87624157 CAAAATAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (15 bp):
CAAATTTTATAATTT
Found at i:87625837 original size:4 final size:4
Alignment explanation
Indices: 87625792--87625870 Score: 58
Period size: 4 Copynumber: 19.8 Consensus size: 4
87625782 AAACAAATAA
* *
87625792 AAAG AAAT AAAG AAAT AAAG TAAAG AATTAG AACAG --AG AAAG AAAG
1 AAAG AAAG AAAG AAAG AAAG -AAAG AA--AG AA-AG AAAG AAAG AAAG
* *
87625838 -AA- AAAG AGAG AAAG AAAG AAGG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
87625871 AAGGAAAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
2 2 0.03
3 4 0.07
4 43 0.73
5 6 0.10
6 4 0.07
ACGTcount: A:0.70, C:0.01, G:0.23, T:0.06
Consensus pattern (4 bp):
AAAG
Found at i:87625849 original size:18 final size:18
Alignment explanation
Indices: 87625826--87625879 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
87625816 GAATTAGAAC
87625826 AGAGAAAGAAAGAAAAAG
1 AGAGAAAGAAAGAAAAAG
87625844 AGAGAAAGAAAGAAGGAAAG
1 AGAGAAAGAAAGAA--AAAG
* *
87625864 AAAGAAA-AAGGAAAAA
1 AGAGAAAGAAAGAAAAA
87625880 TTAGAGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 3 0.09
18 14 0.44
19 5 0.16
20 10 0.31
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
AGAGAAAGAAAGAAAAAG
Found at i:87626718 original size:44 final size:44
Alignment explanation
Indices: 87626660--87626745 Score: 136
Period size: 44 Copynumber: 2.0 Consensus size: 44
87626650 TGTTCAGGGA
*
87626660 TACTTCGACCTTGAGTCGATGAGGCACTATAAGTGTCGTACTAT
1 TACTTCGACCTTGAGTCGATGAGGCACCATAAGTGTCGTACTAT
* * *
87626704 TACTTTGACTTTGAGTCGATGAGGCACCATATGTGTCGTACT
1 TACTTCGACCTTGAGTCGATGAGGCACCATAAGTGTCGTACT
87626746 GCTATTGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (44 bp):
TACTTCGACCTTGAGTCGATGAGGCACCATAAGTGTCGTACTAT
Found at i:87641644 original size:40 final size:40
Alignment explanation
Indices: 87641554--87641778 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
87641544 TTGAATGATG
* * *
87641554 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
87641593 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
87641634 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
87641673 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
87641714 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
87641752 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
87641779 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.21
40 110 0.70
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:87646540 original size:38 final size:39
Alignment explanation
Indices: 87646497--87646587 Score: 130
Period size: 39 Copynumber: 2.4 Consensus size: 39
87646487 TGAAACCAAT
*
87646497 TACCAGCAC-AAGCCTACGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTACGGGAATTTAAACCCGCTATAA
* * *
87646535 TACCAGCTCGAAGCTTGCGGGAATTTAAACCCGCTATAA
1 TACCAGCACGAAGCCTACGGGAATTTAAACCCGCTATAA
*
87646574 TACCAGCTCGAAGC
1 TACCAGCACGAAGC
87646588 TTGTGGGACT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
38 8 0.17
39 40 0.83
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTACGGGAATTTAAACCCGCTATAA
Found at i:87646619 original size:39 final size:39
Alignment explanation
Indices: 87646513--87646600 Score: 149
Period size: 39 Copynumber: 2.3 Consensus size: 39
87646503 CACAAGCCTA
*
87646513 CGGGAATTTAAACCCGGTATAATACCAGCTCGAAGCTTG
1 CGGGAATTTAAACCCGCTATAATACCAGCTCGAAGCTTG
87646552 CGGGAATTTAAACCCGCTATAATACCAGCTCGAAGCTTG
1 CGGGAATTTAAACCCGCTATAATACCAGCTCGAAGCTTG
* *
87646591 TGGGACTTTA
1 CGGGAATTTA
87646601 GCCCAGACAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (39 bp):
CGGGAATTTAAACCCGCTATAATACCAGCTCGAAGCTTG
Found at i:87651278 original size:27 final size:27
Alignment explanation
Indices: 87651247--87651424 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87651237 TAAATTGTAC
87651247 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
87651274 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87651300 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
87651328 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
87651356 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87651383 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
87651410 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87651425 GACTCAATAC
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:87651361 original size:82 final size:81
Alignment explanation
Indices: 87651248--87651403 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87651238 AAATTGTACA
* *
87651248 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
87651312 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
87651329 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
87651394 TGCGAGTTGA
65 TGCGAATTGA
87651404 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87651415 original size:82 final size:81
Alignment explanation
Indices: 87651244--87651424 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
87651234 GATTAAATTG
* *
87651244 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
87651309 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
87651325 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
87651389 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87651407 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87651425 GACTCAATAC
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87656304 original size:18 final size:18
Alignment explanation
Indices: 87656281--87656328 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
87656271 GTTGAATCGG
* *
87656281 ATTTTTTAATTTTTTATT
1 ATTTTTTAAATTTTTAAT
87656299 ATTTTTTAAATTTTTAAT
1 ATTTTTTAAATTTTTAAT
*
87656317 AATTTTTAAATT
1 ATTTTTTAAATT
87656329 GGATCGATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTAAATTTTTAAT
Found at i:87660015 original size:18 final size:19
Alignment explanation
Indices: 87659982--87660019 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
87659972 AGACTCCAGG
*
87659982 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
87660001 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
87660019 T
1 T
87660020 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:87665666 original size:16 final size:16
Alignment explanation
Indices: 87665645--87665678 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
87665635 AGAAACCTAA
87665645 AATAATAAAAT-CAAAT
1 AATAAT-AAATCCAAAT
87665661 AATAATAAATCCAAAT
1 AATAATAAATCCAAAT
87665677 AA
1 AA
87665679 ACAGTCCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.24
Consensus pattern (16 bp):
AATAATAAATCCAAAT
Found at i:87666970 original size:29 final size:29
Alignment explanation
Indices: 87666938--87666995 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
87666928 TTTATTTTAG
87666938 TCCCTTTTTTATTTATTTTATTTGTTCTT
1 TCCCTTTTTTATTTATTTTATTTGTTCTT
87666967 TCCCTTTTTTATTTATTTTATTTGTTCTT
1 TCCCTTTTTTATTTATTTTATTTGTTCTT
87666996 ACTTTAATCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.10, C:0.14, G:0.03, T:0.72
Consensus pattern (29 bp):
TCCCTTTTTTATTTATTTTATTTGTTCTT
Found at i:87667114 original size:16 final size:16
Alignment explanation
Indices: 87667093--87667132 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
87667083 CTTTAATCCT
*
87667093 TTTATTTACTT-ATTTA
1 TTTATTCACTTGA-TTA
87667109 TTTATTCACTTGATTA
1 TTTATTCACTTGATTA
87667125 TTTATTCA
1 TTTATTCA
87667133 TTATTCTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTATTCACTTGATTA
Found at i:87667280 original size:3 final size:3
Alignment explanation
Indices: 87667272--87667312 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
87667262 GTTTGTGCCT
*
87667272 TTA TTA TTA TTA TCA TTA TTA TTA TTA TT- TTA TTA TCTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT
87667313 CATCTATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:87674025 original size:29 final size:29
Alignment explanation
Indices: 87673992--87674052 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
87673982 GTGCTGATTC
*
87673992 CATGTCCCAGACATAGTCTTACACTGGCA
1 CATGTCCCAGACATAGTCTTACACTGACA
*
87674021 CATGTCCCGGACATAGTCTTACACTGACA
1 CATGTCCCAGACATAGTCTTACACTGACA
87674050 CAT
1 CAT
87674053 CTTGTAGCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (29 bp):
CATGTCCCAGACATAGTCTTACACTGACA
Found at i:87674190 original size:48 final size:46
Alignment explanation
Indices: 87674062--87674227 Score: 174
Period size: 46 Copynumber: 3.6 Consensus size: 46
87674052 TCTTGTAGCT
* *
87674062 GATGCATGTCCCAGACATGTCTTACATTGGCT-TAAATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACATTGGCTCT-CATCTCAAGGCC
* * * *
87674108 AATGCATGTCCCAAACATGTCTTACATTAGCTCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACATTGGCTCTCATCTCAAGGCC
* * ** *
87674154 GATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACATTGGCTCTCAT-CTCAAGGCC
*
87674202 GATGCATGTCTCAGACATGTCTTACA
1 GATGCATGTCCCAGACATGTCTTACA
87674228 CTAGCACACA
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
46 49 0.49
47 27 0.27
48 23 0.23
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACATTGGCTCTCATCTCAAGGCC
Found at i:87677397 original size:49 final size:49
Alignment explanation
Indices: 87677335--87677522 Score: 232
Period size: 49 Copynumber: 3.8 Consensus size: 49
87677325 TGAGGTCACG
* * * **
87677335 TGTGTAGTGCTAAGTGCAAGCTACTACGTGTACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * ** * *
87677384 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCAATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCGCA
* *
87677435 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
87677484 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
87677523 GCTTCGGCTA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 72 0.62
50 4 0.03
51 40 0.34
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:87677503 original size:100 final size:100
Alignment explanation
Indices: 87677330--87677527 Score: 333
Period size: 100 Copynumber: 2.0 Consensus size: 100
87677320 TATTGTGAGG
* **
87677330 TCACGTGTGTAGTGCTAAGTGCAAGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
87677395 AAGTGCAGGCTACTATGCGTACCTGATAACTTCAA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCAA
* *
87677430 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
87677495 AAGTGCAGGCTACTATGCGTACCAGATAGCTTC
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTC
87677528 GGCTACAAGT
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCAA
Found at i:87682633 original size:93 final size:93
Alignment explanation
Indices: 87682474--87682644 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
87682464 CCCATAAGCG
* * * *
87682474 AACTCAGACTCAACTCAACAAGCTAGGGCGTTCACATCTATAAGTGAACTCAGACTCAACTCAAC
1 AACTCAGACTCAACTCAACAAGCTAGGACATTCACATCCATAAGTGAACCCAGACTCAACTCAAC
87682539 GAGCTCGGATGCCTAGTTACATCTCACA
66 GAGCTCGGATGCCTAGTTACATCTCACA
* * * * * *
87682567 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACAAGCTAGGACATTCACATCCATAAGTGAACCCAGACTCAACTCAAC
*
87682632 GAGTTCGGATGCC
66 GAGCTCGGATGCC
87682645 CAAATATCCC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACAAGCTAGGACATTCACATCCATAAGTGAACCCAGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACA
Found at i:87685067 original size:30 final size:30
Alignment explanation
Indices: 87685032--87685091 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
87685022 CAAGAAAACT
*
87685032 GAATAAAGAAATCCAAGA-TAGAGAAACCCG
1 GAATAAAGAAATCC-AGACTAAAGAAACCCG
87685062 GAATAAAGAAATCCAGACTAAAGAAACCCG
1 GAATAAAGAAATCCAGACTAAAGAAACCCG
87685092 AGATACGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 3 0.11
30 25 0.89
ACGTcount: A:0.53, C:0.18, G:0.18, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAGACTAAAGAAACCCG
Found at i:87685071 original size:15 final size:15
Alignment explanation
Indices: 87685053--87685091 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
87685043 TCCAAGATAG
87685053 AGAAACCCGGAATAA
1 AGAAACCCGGAATAA
* * *
87685068 AGAAATCCAGACTAA
1 AGAAACCCGGAATAA
87685083 AGAAACCCG
1 AGAAACCCG
87685092 AGATACGATA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.51, C:0.23, G:0.18, T:0.08
Consensus pattern (15 bp):
AGAAACCCGGAATAA
Found at i:87688079 original size:46 final size:47
Alignment explanation
Indices: 87688012--87688188 Score: 168
Period size: 46 Copynumber: 3.8 Consensus size: 47
87688002 ATGTAACCCG
* * *
87688012 TCCATAAGCGAGCCCGGACTCAAATCAACCAGCTC-GACCGTTCGCA
1 TCCATAAGCGAACCCGGACTCAACTCAACGAGCTCGGACCGTTCGCA
* * *
87688058 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTTGTT-ACA
1 TCCATAAGCGAACCCGGACTCAACTCAACGAGCTCGGA--CC--GTTCGCA
* * * *
87688108 T-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCA
1 TCCATAAGCGAACCCGGACTCAACTCAACGAGCTCGGACCGTTCGCA
* *
87688151 TCCATAAGTGAACCCGGACTCAACTCAACGAGTTCGGA
1 TCCATAAGCGAACCCGGACTCAACTCAACGAGCTCGGA
87688189 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.54
47 30 0.28
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.20
Consensus pattern (47 bp):
TCCATAAGCGAACCCGGACTCAACTCAACGAGCTCGGACCGTTCGCA
Found at i:87701485 original size:95 final size:95
Alignment explanation
Indices: 87701370--87701560 Score: 285
Period size: 95 Copynumber: 2.0 Consensus size: 95
87701360 TTTAAGCTAT
* * *
87701370 AAGTTACAAATCCTATACCCCTGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAG-GCCTT
1 AAGTTACAAATCCTATACCCCTAAAGTTGCAGTAGGACGGATTGAAGTTATCATGG-AGAACCTT
* *
87701434 ATCTCCTTGAAGTTGCAGTGGAGTAGGTTAA
65 ATCTCCCTGAAGTTGCAGTGGAGTAGATTAA
* * * *
87701465 AAGTTACAAATCCTATACCCCTAAAGTTGTAGTAGGATGGATTGAAGTTATCATGGTGAATCTTA
1 AAGTTACAAATCCTATACCCCTAAAGTTGCAGTAGGACGGATTGAAGTTATCATGGAGAACCTTA
87701530 TCTCCCTGAAGTTGCAGTGGAGTAGATTAA
66 TCTCCCTGAAGTTGCAGTGGAGTAGATTAA
87701560 A
1 A
87701561 GCCACGAACC
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
94 1 0.01
95 85 0.99
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (95 bp):
AAGTTACAAATCCTATACCCCTAAAGTTGCAGTAGGACGGATTGAAGTTATCATGGAGAACCTTA
TCTCCCTGAAGTTGCAGTGGAGTAGATTAA
Found at i:87701589 original size:44 final size:44
Alignment explanation
Indices: 87701522--87701777 Score: 227
Period size: 44 Copynumber: 5.8 Consensus size: 44
87701512 TTATCATGGT
* *
87701522 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCAC
1 GAATCTTATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCCAC
* * * * **
87701566 GAACCTTATTTCACTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC
1 GAATCTTATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCCAC
* * * * *
87701610 GAAT-TTCAACTCCCTGAAGTTACAGTGGAGCAAATTGTAAATG--GC
1 GAATCTT-ATCTCACTGAAGTTGCAGTGGAGCAGA-T-TAAA-GCCAC
* * * *
87701655 TAATCTTATCTCACTGAGGTTGCAGCAGG-GCAGATTAAAGTCAC
1 GAATCTTATCTCACTGAAGTTGCAG-TGGAGCAGATTAAAGCCAC
* * *
87701699 GAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCTAC
1 GAATCTTATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCCAC
87701743 -AGATCTTATCTC-CATGAAGTTGCAGTGGAGCAGAT
1 GA-ATCTTATCTCAC-TGAAGTTGCAGTGGAGCAGAT
87701778 CGAAGCGACA
Statistics
Matches: 168, Mismatches: 33, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
42 1 0.01
43 10 0.06
44 126 0.75
45 23 0.14
46 7 0.04
47 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
GAATCTTATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCCAC
Found at i:87701761 original size:133 final size:133
Alignment explanation
Indices: 87701523--87701774 Score: 321
Period size: 133 Copynumber: 1.9 Consensus size: 133
87701513 TATCATGGTG
* * * *
87701523 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCACGAACCTTATTTCACTGAAGTTG
1 AATCTTATCTCACTGAAGTTGCAGAGGAGCAGATTAAAGCCACGAACCTTATCTCACTGAAGTTG
* * * *
87701588 CAGTGGAGCAGGTTGAAGTTACGAATTTCAACTCCCTGAAGTTACAGTGGAGCAAATTGTAAATG
66 CAGTGGAGCAGATTAAAGCTACGAATTTCAACTCCATGAAGTTACAGTGGAGCAAATTGTAAATG
87701653 GCT
131 GCT
* * * *
87701656 AATCTTATCTCACTGAGGTTGCAGCAGG-GCAGATTAAAGTCACGAATCTTATCTCTCTGAAGTT
1 AATCTTATCTCACTGAAGTTGCAG-AGGAGCAGATTAAAGCCACGAACCTTATCTCACTGAAGTT
* * *
87701720 GCAGTGGAGTAGATTAAAGCTAC-AGATCTT-ATCTCCATGAAGTTGCAGTGGAGCA
65 GCAGTGGAGCAGATTAAAGCTACGA-AT-TTCAACTCCATGAAGTTACAGTGGAGCA
87701775 GATCGAAGCG
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
132 1 0.01
133 96 0.95
134 4 0.04
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (133 bp):
AATCTTATCTCACTGAAGTTGCAGAGGAGCAGATTAAAGCCACGAACCTTATCTCACTGAAGTTG
CAGTGGAGCAGATTAAAGCTACGAATTTCAACTCCATGAAGTTACAGTGGAGCAAATTGTAAATG
GCT
Found at i:87702004 original size:16 final size:16
Alignment explanation
Indices: 87701980--87702018 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
87701970 AATACAGAAA
*
87701980 CAAAAAATAATAAAAC
1 CAAATAATAATAAAAC
*
87701996 CAAATAATAATAAATC
1 CAAATAATAATAAAAC
87702012 CAAATAA
1 CAAATAA
87702019 ACAGTCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.13, G:0.00, T:0.18
Consensus pattern (16 bp):
CAAATAATAATAAAAC
Found at i:87703303 original size:16 final size:16
Alignment explanation
Indices: 87703282--87703321 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
87703272 CTTTAATCCT
* *
87703282 TTTATTTACTTATTTA
1 TTTATTCACTTAGTTA
*
87703298 TTTATTCACTTGGTTA
1 TTTATTCACTTAGTTA
87703314 TTTATTCA
1 TTTATTCA
87703322 TTATTCTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (16 bp):
TTTATTCACTTAGTTA
Found at i:87703474 original size:3 final size:3
Alignment explanation
Indices: 87703460--87703494 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
87703450 TGTTTGTGCC
*
87703460 ATT ATC ATT ATT ATT ATT ATT ATT ATT ATCT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT A
87703495 ATCTATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:87703734 original size:3 final size:3
Alignment explanation
Indices: 87703726--87703774 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
87703716 TTTACACATT
* *
87703726 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
87703774 T
1 T
87703775 ATTTTTATCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:87705659 original size:13 final size:13
Alignment explanation
Indices: 87705641--87705667 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
87705631 GAAGTAATCG
87705641 CACACGGGCGTGT
1 CACACGGGCGTGT
87705654 CACACGGGCGTGT
1 CACACGGGCGTGT
87705667 C
1 C
87705668 TCTACTAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:87717140 original size:44 final size:44
Alignment explanation
Indices: 87717085--87717173 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
87717075 AGTGATTTTG
*
87717085 CAGTAGGTGCAGTTTTGGGACGGCAAAGAGATAAGAATTTTCAA
1 CAGTAGGTGCAGTTTTGGGACGGCAAAGAGACAAGAATTTTCAA
* *
87717129 CAGTAGGTGCAGTTTTGGGACGGCGAAGAGACAAGCATTTTCAA
1 CAGTAGGTGCAGTTTTGGGACGGCAAAGAGACAAGAATTTTCAA
87717173 C
1 C
87717174 CTATCTATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (44 bp):
CAGTAGGTGCAGTTTTGGGACGGCAAAGAGACAAGAATTTTCAA
Found at i:87725229 original size:15 final size:15
Alignment explanation
Indices: 87725196--87725225 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
87725186 AGGTATAAAG
87725196 CAAATTTTATAATTT
1 CAAATTTTATAATTT
87725211 CAAATTTT-TAATTT
1 CAAATTTTATAATTT
87725225 C
1 C
87725226 CAAAATAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (15 bp):
CAAATTTTATAATTT
Found at i:87739041 original size:27 final size:29
Alignment explanation
Indices: 87739011--87739070 Score: 81
Period size: 27 Copynumber: 2.1 Consensus size: 29
87739001 TTTTATTTTT
87739011 ATTTCTAA-TTTTAGTTTTTTAC-ATTT-A
1 ATTTC-AATTTTTAGTTTTTTACTATTTGA
*
87739038 ATTTCAATTTTTATTTTTTTACTATTTGA
1 ATTTCAATTTTTAGTTTTTTACTATTTGA
87739067 ATTT
1 ATTT
87739071 AATAATTGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 4 0.14
29 5 0.17
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (29 bp):
ATTTCAATTTTTAGTTTTTTACTATTTGA
Found at i:87739526 original size:17 final size:17
Alignment explanation
Indices: 87739501--87739533 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
87739491 AGTATAATTA
87739501 AACAAAAGAAAATAAAG
1 AACAAAAGAAAATAAAG
*
87739518 AACAGAAGAAAATAAA
1 AACAAAAGAAAATAAA
87739534 ATAAAAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (17 bp):
AACAAAAGAAAATAAAG
Found at i:87744004 original size:22 final size:23
Alignment explanation
Indices: 87743962--87744030 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 23
87743952 TATATAAAAA
87743962 ACAATTTAAAAATAAATAATAAT
1 ACAATTTAAAAATAAATAATAAT
* *
87743985 ACAATTTTAAATAATCAATATATTAAA
1 ACAA-TTTAAA-AAT-AA-ATAATAAT
*
87744012 ACAAATT-AAAATAAATAAT
1 ACAATTTAAAAATAAATAAT
87744031 GTACATAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
22 4 0.11
23 6 0.16
24 9 0.24
25 5 0.13
26 4 0.11
27 10 0.26
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (23 bp):
ACAATTTAAAAATAAATAATAAT
Found at i:87745621 original size:44 final size:44
Alignment explanation
Indices: 87745548--87746093 Score: 467
Period size: 44 Copynumber: 12.7 Consensus size: 44
87745538 TCATTCCATC
* * * * * **
87745548 CCACTGCATCTTCAGGG-GTATAGGAATTGTTGCTTTGATCCACT
1 CCACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTTAATCTGCT
* * * * * * *
87745592 CCACTACAACTTTAGGGAGATAAGAATTGTAACTTCAACCTGCC
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* *
87745636 CCACTGCAACTTCATGGG-GATAAGGTTTGTGGCTTTAATCTGCT
1 CCACTGCAACTTCA-GGGAGATAAGATTTGTAGCTTTAATCTGCT
* * * * *
87745680 CCACTGCAACTTCAGGGAGATAAGAATTGTAACTTCAACCTGCC
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* * * *
87745724 CCACTGCAACTTCAGGGGGATAAGGTTTGTGGCTTTAATCTTCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* *
87745768 CCACTACAACTTCAGGGAGATAAGATTTGTTA--TTTCAACCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTT-AATCTGCT
* * *
87745812 CCACTGCAACTTCAAGGAGATAAGGTTTGTGGCTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* * *
87745856 CCACTGCAACTTCTGGGAGATAAGATTTGCTATC-TTCATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCT
* * *
87745900 CCACTGCAACTTCAGGAAGATAAGACTTGTAACTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
*
87745944 CCACTGCAACTTCAGGGAGAT-AG----G-A--TTT--GCT-CT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* * * ** *
87745977 CCACTACAACTTCAGGAAGATAAGACTTGTAATTTTAATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* * * * * * *
87746021 CGACTACAACTTCAGGGAGATAAGGTTTATGGCTTCAATCTGAT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
* *
87746065 CCACTGCAACTTTAGGGAGACAAGATTTG
1 CCACTGCAACTTCAGGGAGATAAGATTTG
87746094 CCATGGTGAT
Statistics
Matches: 400, Mismatches: 82, Indels: 40
0.77 0.16 0.08
Matches are distributed among these distances:
33 21 0.05
34 4 0.01
36 3 0.01
38 2 0.00
39 2 0.00
41 3 0.01
43 13 0.03
44 342 0.86
45 10 0.03
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCT
Found at i:87745697 original size:88 final size:87
Alignment explanation
Indices: 87745547--87745965 Score: 536
Period size: 88 Copynumber: 4.8 Consensus size: 87
87745537 CTCATTCCAT
* * * * ** * *
87745547 CCCACTGCATCTTCAGGGG-TATAGGAATTGTTGCTTTGATCCACTCCACTACAACTTTAGGGAG
1 CCCACTGCAACTTCAGGGGATA-AGG-TTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
87745611 ATAAGAATTGTAACTTCAACCTGC
64 ATAAGAATTGTAACTTCAACCTGC
87745635 CCCACTGCAACTTCATGGGGATAAGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
1 CCCACTGCAACTTCA-GGGGATAAGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
87745700 TAAGAATTGTAACTTCAACCTGC
65 TAAGAATTGTAACTTCAACCTGC
* *
87745723 CCCACTGCAACTTCAGGGGGATAAGGTTTGTGGCTTTAATCTTCTCCACTACAACTTCAGGGAGA
1 CCCACTGCAACTTCA-GGGGATAAGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
* * *
87745788 TAAGATTTGTTATTTCAACCTGC
65 TAAGAATTGTAACTTCAACCTGC
* * *
87745811 TCCACTGCAACTTCAAGGAGATAAGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCTGGGAGA
1 CCCACTGCAACTTC-AGGGGATAAGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
* * *
87745876 TAAGATTTGCTATCTTC-ATCTGC
65 TAAGAATTG-TAACTTCAACCTGC
* * ** **
87745899 TCCACTGCAACTTCAGGAAGATAAGACTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAGA
1 CCCACTGCAACTTCAGG-GGATAAGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
87745964 TA
65 TA
87745966 GGATTTGCTC
Statistics
Matches: 298, Mismatches: 28, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
87 3 0.01
88 281 0.94
89 12 0.04
90 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (87 bp):
CCCACTGCAACTTCAGGGGATAAGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
AAGAATTGTAACTTCAACCTGC
Found at i:87746031 original size:77 final size:77
Alignment explanation
Indices: 87745898--87746042 Score: 245
Period size: 77 Copynumber: 1.9 Consensus size: 77
87745888 TCTTCATCTG
* * *
87745898 CTCCACTGCAACTTCAGGAAGATAAGACTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTACAACTTCAGGAAGATAAGACTTGTAACTTTAATATGCTCCACTACAACTTCAGGGAG
87745963 ATAGGATTTGCT
66 ATAGGATTTGCT
* *
87745975 CTCCACTACAACTTCAGGAAGATAAGACTTGTAATTTTAATATGCTCGACTACAACTTCAGGGAG
1 CTCCACTACAACTTCAGGAAGATAAGACTTGTAACTTTAATATGCTCCACTACAACTTCAGGGAG
87746040 ATA
66 ATA
87746043 AGGTTTATGG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
77 63 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (77 bp):
CTCCACTACAACTTCAGGAAGATAAGACTTGTAACTTTAATATGCTCCACTACAACTTCAGGGAG
ATAGGATTTGCT
Found at i:87746068 original size:121 final size:121
Alignment explanation
Indices: 87745854--87746094 Score: 286
Period size: 121 Copynumber: 2.0 Consensus size: 121
87745844 CTTTAATCTG
* * * * * * *
87745854 CTCCACTGCAACTTCTGGGAGATAAGATTTGCTATCTTCATCTGCTCCACTGCAACTTCAGGAAG
1 CTCCACTACAACTTCAGGAAGATAAGACTTGCTATCTTAATATGCTCCACTACAACTTCAGGAAG
* * * * *
87745919 ATAAGACTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTTGCT
66 ATAAGACTTATAACTTCAATCTGATCCACTGCAACTTCAGGGAGACAAGATTTGCT
* * *
87745975 CTCCACTACAACTTCAGGAAGATAAGACTTG-TAATTTTAATATGCTCGACTACAACTTCAGGGA
1 CTCCACTACAACTTCAGGAAGATAAGACTTGCT-ATCTTAATATGCTCCACTACAACTTCAGGAA
** ** *
87746039 GATAAGGTTTATGGCTTCAATCTGATCCACTGCAACTTTAGGGAGACAAGATTTGC
65 GATAAGACTTATAACTTCAATCTGATCCACTGCAACTTCAGGGAGACAAGATTTGC
87746095 CATGGTGATT
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
120 1 0.01
121 98 0.99
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (121 bp):
CTCCACTACAACTTCAGGAAGATAAGACTTGCTATCTTAATATGCTCCACTACAACTTCAGGAAG
ATAAGACTTATAACTTCAATCTGATCCACTGCAACTTCAGGGAGACAAGATTTGCT
Found at i:87754138 original size:27 final size:27
Alignment explanation
Indices: 87754108--87754284 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
87754098 AAATTGTACA
* *
87754108 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
* ** *
87754135 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
87754162 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* *
87754189 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
87754217 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
87754244 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
87754271 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
87754285 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:87754221 original size:82 final size:81
Alignment explanation
Indices: 87754108--87754263 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
87754098 AAATTGTACA
* * * *
87754108 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
87754172 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
87754189 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
87754254 TGCGAGTTGA
65 TGCGAATTGA
87754264 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87754275 original size:82 final size:81
Alignment explanation
Indices: 87754104--87754284 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
87754094 GATTAAATTG
* * * * *
87754104 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
87754169 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
87754185 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
87754249 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87754267 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87754285 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87775486 original size:40 final size:40
Alignment explanation
Indices: 87775403--87775588 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
87775393 TTGAATGATG
* * * *
87775403 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
87775443 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87775483 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87775523 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87775564 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87775589 AACGAGGAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87775606 original size:80 final size:79
Alignment explanation
Indices: 87775403--87775611 Score: 228
Period size: 80 Copynumber: 2.6 Consensus size: 79
87775393 TTGAATGATG
** * * * *
87775403 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAAG-TCCCGAAGGCAT
87775466 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* ** *
87775483 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAGTCCCGAAGGCATTT
87775548 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* *
87775564 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAA
87775612 ATTCTGAAGG
Statistics
Matches: 112, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
79 8 0.07
80 93 0.83
81 11 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:87779704 original size:11 final size:11
Alignment explanation
Indices: 87779674--87779705 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
87779664 TTAGATTAGG
*
87779674 TTTTCTTTCTC
1 TTTTCTTTTTC
87779685 TTTTCTTTTTC
1 TTTTCTTTTTC
87779696 TTTTCTTTTT
1 TTTTCTTTTT
87779706 TAGTTTAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:87789451 original size:18 final size:18
Alignment explanation
Indices: 87789430--87789469 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
87789420 CAAAACTAAC
*
87789430 AAACAAATCAAAAACCAA
1 AAACAAAACAAAAACCAA
* *
87789448 AAACAAAACCAAATCCAA
1 AAACAAAACAAAAACCAA
87789466 AAAC
1 AAAC
87789470 CTAGTCCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.70, C:0.25, G:0.00, T:0.05
Consensus pattern (18 bp):
AAACAAAACAAAAACCAA
Found at i:87789765 original size:24 final size:24
Alignment explanation
Indices: 87789738--87789789 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
87789728 ATGCGTATTT
*
87789738 AGATTCAGATACAAATGCAGACAC
1 AGATTCAAATACAAATGCAGACAC
*
87789762 AGATTCAAATACAAATGCAGTCAC
1 AGATTCAAATACAAATGCAGACAC
87789786 AGAT
1 AGAT
87789790 CCTACCCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.19
Consensus pattern (24 bp):
AGATTCAAATACAAATGCAGACAC
Found at i:87812770 original size:40 final size:40
Alignment explanation
Indices: 87812687--87812872 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
87812677 TTGAATGATG
* * * *
87812687 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
87812727 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87812767 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87812807 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87812848 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87812873 AACGAGGAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87812890 original size:80 final size:79
Alignment explanation
Indices: 87812687--87812895 Score: 228
Period size: 80 Copynumber: 2.6 Consensus size: 79
87812677 TTGAATGATG
** * * * *
87812687 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAAG-TCCCGAAGGCAT
87812750 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* ** *
87812767 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAGTCCCGAAGGCATTT
87812832 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* *
87812848 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAA
87812896 ATTCTGAAGG
Statistics
Matches: 112, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
79 8 0.07
80 93 0.83
81 11 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:87816985 original size:11 final size:11
Alignment explanation
Indices: 87816955--87816986 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
87816945 TTAGATTAGG
*
87816955 TTTTCTTTCTC
1 TTTTCTTTTTC
87816966 TTTTCTTTTTC
1 TTTTCTTTTTC
87816977 TTTTCTTTTT
1 TTTTCTTTTT
87816987 TAGTTTAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:87827171 original size:24 final size:24
Alignment explanation
Indices: 87827144--87827195 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
87827134 ATGCGTATTT
*
87827144 AGATTCAGATACAAATGCAGACAC
1 AGATTCAAATACAAATGCAGACAC
*
87827168 AGATTCAAATACAAATGCAGTCAC
1 AGATTCAAATACAAATGCAGACAC
87827192 AGAT
1 AGAT
87827196 CCTACCCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.19
Consensus pattern (24 bp):
AGATTCAAATACAAATGCAGACAC
Found at i:87838760 original size:39 final size:39
Alignment explanation
Indices: 87838661--87838760 Score: 128
Period size: 39 Copynumber: 2.6 Consensus size: 39
87838651 CGTATTCACT
* * * *
87838661 TTTAAGCATATATCACATTACACATATAATTACATAATG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACG
* * *
87838700 TTTAAACACATAACACAATACTCATATAATCACATAACG
1 TTTAAGCATATATCACAATACTCATATAATCACATAACG
*
87838739 TTTAAGCATATATCGCAATACT
1 TTTAAGCATATATCACAATACT
87838761 AAAAACCGTG
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACG
Found at i:87841015 original size:19 final size:19
Alignment explanation
Indices: 87840991--87841069 Score: 126
Period size: 19 Copynumber: 4.3 Consensus size: 19
87840981 TCAACATTTA
87840991 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
87841010 ATATCATATCTAAGATTG-
1 ATATCATATCTAAGATTGC
*
87841028 -TATCATATCTAAGATTGT
1 ATATCATATCTAAGATTGC
*
87841046 ATATCATATCTAAGATTAC
1 ATATCATATCTAAGATTGC
87841065 ATATC
1 ATATC
87841070 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
17 17 0.30
19 39 0.70
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:87841079 original size:36 final size:36
Alignment explanation
Indices: 87840992--87841062 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
87840982 CAACATTTAA
87840992 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
*
87841028 TATCATATCTAAGATTGTATATCATATCTAAGATT
1 TATCATATCTAAGATTGCATATCATATCTAAGATT
87841063 ACATATCCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.41
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:87841517 original size:45 final size:44
Alignment explanation
Indices: 87841465--87841562 Score: 151
Period size: 45 Copynumber: 2.2 Consensus size: 44
87841455 CTCTGTAGTT
*
87841465 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCT-TCTTC
* *
87841510 GATCTGCTCCCCGTCTAATATAGAGACGCCAAATTTGCTTCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTC
*
87841554 AATCTGCTC
1 GATCTGCTC
87841563 GTTACAAACT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 13 0.27
45 36 0.73
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (44 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTTCTTC
Found at i:87842001 original size:205 final size:205
Alignment explanation
Indices: 87841637--87842338 Score: 1242
Period size: 205 Copynumber: 3.4 Consensus size: 205
87841627 AAATGTGCTT
* * *
87841637 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* *
87841702 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * **
87841767 GGATCTACTTCAGTATAAACATTTGAAGGTTAGATCTGCTATGTGTCTACCCTATGTCGAAGTGG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
87841832 AGATGCCAGA
196 AGATGCCAGA
*
87841842 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
87841907 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
87841972 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
*
87842037 AGATGCCAAA
196 AGATGCCAGA
*
87842047 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGTTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
87842112 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAAGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
87842177 GGATCTACTTCAGTATAAACATCTGACGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
131 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
87842242 AGATGCCAGA
196 AGATGCCAGA
* *
87842252 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGGTTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
87842317 GTGAAAGCCAAATCAGCTATGT
66 GTGAAAGCCAAATCAGCTATGT
87842339 TTTTGATCTG
Statistics
Matches: 475, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
205 475 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
AGATGCCAGA
Found at i:87842458 original size:44 final size:44
Alignment explanation
Indices: 87842366--87842948 Score: 370
Period size: 44 Copynumber: 13.3 Consensus size: 44
87842356 CTAATACAAA
* * ** * * **
87842366 GATGCCAAATCTGGTATCTTCGATCTACTCTCTA-ACAATACAAA
1 GATGCCAAATCTGCTATCTTCAATCTGTTCCCTATA-AACACAGG
*
87842410 GATGCCAAATCTGCTATCTTCAA-CTTGTTTCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGG
** ** * * * * *
87842454 GATGCCATGT-TGAAATCCTT-GATCTACTTCGCTGTAAGCACA-G
1 GATGCCAAATCTGCTAT-CTTCAATCT-GTTCCCTATAAACACAGG
* * * * *
87842497 AAGTGTCAGATTTGTTATCTTCAATCTGTTCCCTATAAACACAGG
1 GA-TGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAGG
*
87842542 GATGTCAAATCTGCTATCTTCAA-CTTGTTCCCTATAAACACA-G
1 GATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGG
** * * * * *
87842585 GATGCC--ATGCTGAAATCCTCAATCTGTTTCACTGTAAGCATA-G
1 GATGCCAAAT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGG
* * * ** *
87842628 GAGTGTCAGATCTGTTATCTTTGATCTATTCCCTATAAACACAGG
1 GA-TGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAGG
* *
87842673 GATGCCAAATCTGCTAACTTCAA-CTTGTTTCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGG
** * *
87842717 GATGCC--ATGCTGAAATCTTCAATCTGCTTCACTATAAGCACAGG
1 GATGCCAAAT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGG
* * * ** *
87842761 AATGTCAGATCTGCTATCTTTGATCTCTTCCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAGG
*
87842805 GATGCCAAATCTACTATCTTCAA-CTTGTTCCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGG
** * * * *
87842849 GATGCC--ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGG
1 GATGCCAAAT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGG
* * * * *
87842893 AATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAAG
1 GATGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAGG
87842937 GATGCCAAATCT
1 GATGCCAAATCT
87842949 TGTTTCTTTG
Statistics
Matches: 409, Mismatches: 101, Indels: 58
0.72 0.18 0.10
Matches are distributed among these distances:
41 2 0.00
42 16 0.04
43 56 0.14
44 277 0.68
45 52 0.13
46 6 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
GATGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAGG
Found at i:87842783 original size:132 final size:132
Alignment explanation
Indices: 87842410--87842948 Score: 823
Period size: 132 Copynumber: 4.1 Consensus size: 132
87842400 ACAATACAAA
* *
87842410 GATGCCAAATCTGCTATCTTCAACTTGTTTCCTATAAACACAGGGATGCCATGTTGAAATCCTT-
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAAT-CTTC
* * * * * *
87842474 GATCTACTTCGCTGTAAGCACA-GAAGTGTCAGATTTGTTATCTTCAATCTGTTCCCTATAAACA
65 AATCTGCTTCACTGTAAGCACAGGAA-TGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACA
87842538 CAGG
129 CAGG
* *
87842542 GATGTCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACA-GGATGCCATGCTGAAATCCTCA
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
* * * * * *
87842606 ATCTGTTTCACTGTAAGCATAGGAGTGTCAGATCTGTTATCTTTGATCTATTCCCTATAAACACA
66 ATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACA
87842671 GG
131 GG
* *
87842673 GATGCCAAATCTGCTAACTTCAACTTGTTTCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
* * *
87842738 ATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTTGATCTCTTCCCTATAAACACA
66 ATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACA
87842803 GG
131 GG
* *
87842805 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCG
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
87842870 ATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACA
66 ATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACA
*
87842935 AG
131 GG
87842937 GATGCCAAATCT
1 GATGCCAAATCT
87842949 TGTTTCTTTG
Statistics
Matches: 372, Mismatches: 32, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
130 2 0.01
131 110 0.30
132 260 0.70
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (132 bp):
GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
ATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACA
GG
Found at i:87843866 original size:14 final size:15
Alignment explanation
Indices: 87843841--87843891 Score: 70
Period size: 14 Copynumber: 3.5 Consensus size: 15
87843831 GCCTCTCCAT
*
87843841 TTTTTTTCTCTTTTT
1 TTTTTTTCTCTTTTC
87843856 TTCTTTTTCT-TTTTC
1 TT-TTTTTCTCTTTTC
87843871 TTTTTTT-TCTTTTC
1 TTTTTTTCTCTTTTC
87843885 TTTTTTT
1 TTTTTTT
87843892 TGATTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
13 1 0.03
14 17 0.52
15 8 0.24
16 7 0.21
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTTTCTCTTTTC
Found at i:87843872 original size:20 final size:19
Alignment explanation
Indices: 87843840--87843902 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 19
87843830 GGCCTCTCCA
*
87843840 TTTTT-TTTCTCTTTTTTT
1 TTTTTCTTTTTCTTTTTTT
87843858 CTTTTTCTTTTTCTTTTTTT
1 -TTTTTCTTTTTCTTTTTTT
87843878 TCTTTTCTTTTT-TTTGATTTT
1 T-TTTTCTTTTTCTTT--TTTT
87843899 TTTT
1 TTTT
87843903 AAATAGAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 9 0.23
20 25 0.64
21 5 0.13
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.86
Consensus pattern (19 bp):
TTTTTCTTTTTCTTTTTTT
Found at i:87843889 original size:15 final size:14
Alignment explanation
Indices: 87843840--87843902 Score: 72
Period size: 15 Copynumber: 4.4 Consensus size: 14
87843830 GGCCTCTCCA
*
87843840 TTTTTTTTCTCTTT
1 TTTTTTTTTTCTTT
*
87843854 TTTTCTTTTTCTTT
1 TTTTTTTTTTCTTT
87843868 TTCTTTTTTTTCTTT
1 TT-TTTTTTTTCTTT
**
87843883 TCTTTTTTTTGATTT
1 T-TTTTTTTTTCTTT
87843898 TTTTT
1 TTTTT
87843903 AAATAGAAGT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
14 18 0.43
15 23 0.55
16 1 0.02
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.86
Consensus pattern (14 bp):
TTTTTTTTTTCTTT
Found at i:87843890 original size:21 final size:21
Alignment explanation
Indices: 87843840--87843890 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
87843830 GGCCTCTCCA
87843840 TTTTTTTTCTCTTTTTTTCTT
1 TTTTTTTTCTCTTTTTTTCTT
87843861 TTTCTTTTTCT-TTTTTTTCTT
1 TTT-TTTTTCTCTTTTTTTCTT
87843882 TTCTTTTTT
1 TT-TTTTTT
87843891 TTGATTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (21 bp):
TTTTTTTTCTCTTTTTTTCTT
Found at i:87843899 original size:21 final size:21
Alignment explanation
Indices: 87843843--87843889 Score: 78
Period size: 20 Copynumber: 2.2 Consensus size: 21
87843833 CTCTCCATTT
87843843 TTTTTCTCTTTTTTTCTTTTTC
1 TTTTTCT-TTTTTTTCTTTTTC
87843865 TTTTTCTTTTTTTTC-TTTTC
1 TTTTTCTTTTTTTTCTTTTTC
87843885 TTTTT
1 TTTTT
87843890 TTTGATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 10 0.40
21 8 0.32
22 7 0.28
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTCTTTTTTTTCTTTTTC
Found at i:87843902 original size:14 final size:13
Alignment explanation
Indices: 87843840--87843902 Score: 63
Period size: 14 Copynumber: 4.5 Consensus size: 13
87843830 GGCCTCTCCA
*
87843840 TTTTTTTTCTCTT
1 TTTTTTTTTTCTT
87843853 TTTTTCTTTTTCTTT
1 TTTTT-TTTTTC-TT
87843868 TTCTTTTTTTTCTT
1 TT-TTTTTTTTCTT
**
87843882 TTCTTTTTTTTGAT
1 TT-TTTTTTTTCTT
87843896 TTTTTTT
1 TTTTTTT
87843903 AAATAGAAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
13 10 0.23
14 21 0.48
15 10 0.23
16 3 0.07
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.86
Consensus pattern (13 bp):
TTTTTTTTTTCTT
Found at i:87849983 original size:41 final size:39
Alignment explanation
Indices: 87849938--87850026 Score: 130
Period size: 36 Copynumber: 2.3 Consensus size: 39
87849928 AAATTAAATC
87849938 TCTAAGATTACAAGATCATATCTTCAAGATTGCATATCATA
1 TCTAAGATTACAAGATCATATC-T-AAGATTGCATATCATA
*
87849979 TCTAAGATT---ATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACAAGATCATATCTAAGATTGCATATCATA
87850015 TCTAAGATTACA
1 TCTAAGATTACA
87850027 TATCCTTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
36 25 0.57
37 1 0.02
38 9 0.20
41 9 0.20
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (39 bp):
TCTAAGATTACAAGATCATATCTAAGATTGCATATCATA
Found at i:87849987 original size:19 final size:19
Alignment explanation
Indices: 87849938--87850030 Score: 118
Period size: 19 Copynumber: 4.8 Consensus size: 19
87849928 AAATTAAATC
*
87849938 TCTAAGATTACAAGATCATA
1 TCTAAGATTAC-ATATCATA
*
87849958 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTACATATCATA
87849979 TCTAAGATT--ATATCATA
1 TCTAAGATTACATATCATA
*
87849996 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
87850015 TCTAAGATTACATATC
1 TCTAAGATTACATATC
87850031 CTTAAAGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 9
0.85 0.04 0.12
Matches are distributed among these distances:
17 17 0.26
19 29 0.44
20 3 0.05
21 10 0.15
22 7 0.11
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:87850008 original size:36 final size:38
Alignment explanation
Indices: 87849952--87850024 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
87849942 AGATTACAAG
87849952 ATCATATCTTCAAGATTGCATATCATATCTAAGATTAT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTAT
87849990 ATCATATC-T-AAGATTGCATATCATATCTAAGATTA
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTA
87850025 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTAT
Found at i:87852912 original size:11 final size:12
Alignment explanation
Indices: 87852886--87852924 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
87852876 TGATTAAACT
87852886 TATTAAAATAAA
1 TATTAAAATAAA
87852898 TATTAAAAT-AA
1 TATTAAAATAAA
*
87852909 TATT-AGATAAA
1 TATTAAAATAAA
87852920 TATTA
1 TATTA
87852925 GATTAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 3 0.12
11 12 0.50
12 9 0.38
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (12 bp):
TATTAAAATAAA
Found at i:87853940 original size:11 final size:11
Alignment explanation
Indices: 87853924--87853958 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
87853914 ACTAACGCTT
*
87853924 TAATATATATA
1 TAATATATAAA
*
87853935 TAATATAAAAA
1 TAATATATAAA
87853946 TAATATATAAA
1 TAATATATAAA
87853957 TA
1 TA
87853959 GACAATATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATATATAAA
Found at i:87856274 original size:11 final size:11
Alignment explanation
Indices: 87856258--87856399 Score: 57
Period size: 11 Copynumber: 13.0 Consensus size: 11
87856248 TTTGTTTATC
*
87856258 ATATATTTTTT
1 ATATATATTTT
87856269 ATATATATTTT
1 ATATATATTTT
* * *
87856280 AT-TTTGTTAT
1 ATATATATTTT
* *
87856290 ATTTGTATTTT
1 ATATATATTTT
* * *
87856301 A-CTATGTGTT
1 ATATATATTTT
87856311 ATATATATTTT
1 ATATATATTTT
87856322 CATTATATATATATT
1 -A-TATATAT-T-TT
87856337 AT-T-TATTTT
1 ATATATATTTT
*
87856346 A-CTATATTTT
1 ATATATATTTT
* *
87856356 ATCTATTATATT
1 ATATA-TATTTT
87856368 ATTATATATTTT
1 A-TATATATTTT
87856380 -TA-AT-TTTT
1 ATATATATTTT
87856388 ATCATATATTTT
1 AT-ATATATTTT
87856400 TTTTATATAA
Statistics
Matches: 99, Mismatches: 17, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
8 4 0.04
9 7 0.07
10 24 0.24
11 32 0.32
12 17 0.17
13 11 0.11
14 2 0.02
15 2 0.02
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.64
Consensus pattern (11 bp):
ATATATATTTT
Found at i:87856276 original size:15 final size:15
Alignment explanation
Indices: 87856258--87856469 Score: 69
Period size: 15 Copynumber: 13.5 Consensus size: 15
87856248 TTTGTTTATC
87856258 ATATATTTTTTATAT
1 ATATATTTTTTATAT
*
87856273 ATAT-TTTATTT-TGT
1 ATATATTT-TTTATAT
*
87856287 -TATA-TTTGTAT-T
1 ATATATTTTTTATAT
* * *
87856299 TTACTATGTGTTATAT
1 ATA-TATTTTTTATAT
*
87856315 ATAT-TTTCATTATAT
1 ATATATTT-TTTATAT
*
87856330 ATATATTATTTAT-T
1 ATATATTTTTTATAT
* * *
87856344 TTACTATATTTTATCT
1 ATA-TATTTTTTATAT
*
87856360 ATTATATTATTATATAT
1 A-TATATT-TTTTATAT
* * *
87856377 TTTTAATTTTTATCAT
1 ATATATTTTTTAT-AT
*
87856393 ATATTTTTTTTATAT
1 ATATATTTTTTATAT
*
87856408 AAATTATTTATATCTATATT
1 ATA-TATTT-T-T-TATA-T
*
87856428 ATATATTTTTTTAGTAC
1 ATATA-TTTTTTA-TAT
87856445 ATATTATTTTTATATATT
1 ATA-TATTTTT-TATA-T
87856463 ATATATT
1 ATATATT
87856470 ATATTATTCA
Statistics
Matches: 143, Mismatches: 30, Indels: 46
0.65 0.14 0.21
Matches are distributed among these distances:
12 3 0.02
13 8 0.06
14 12 0.08
15 43 0.30
16 28 0.20
17 25 0.17
18 11 0.08
19 7 0.05
20 6 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (15 bp):
ATATATTTTTTATAT
Found at i:87856319 original size:21 final size:19
Alignment explanation
Indices: 87856267--87856321 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
87856257 CATATATTTT
*
87856267 TTATATATATTTTATTTTG
1 TTATATATATTTTATTGTG
*
87856286 TTATATTTGTATTTTACTATGTG
1 TTATA--TATATTTTA-T-TGTG
87856309 TTATATATATTTT
1 TTATATATATTTT
87856322 CATTATATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 5 0.17
21 15 0.52
22 1 0.03
23 8 0.28
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.65
Consensus pattern (19 bp):
TTATATATATTTTATTGTG
Found at i:87856371 original size:34 final size:34
Alignment explanation
Indices: 87856314--87856379 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
87856304 ATGTGTTATA
*
87856314 TATATTTTCATTATATATATATTATTTATTTTAC
1 TATATTTTCATTATATATATATTATATATTTTAC
87856348 TATATTTT-ATCTAT-TATATTATTATATATTTT
1 TATATTTTCAT-TATATATA-TATTATATATTTT
87856380 TAATTTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 6 0.21
34 23 0.79
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (34 bp):
TATATTTTCATTATATATATATTATATATTTTAC
Found at i:87856407 original size:41 final size:42
Alignment explanation
Indices: 87856287--87856386 Score: 107
Period size: 41 Copynumber: 2.4 Consensus size: 42
87856277 TTTATTTTGT
* * * *
87856287 TATATT-TGTATTTTACTATGTGTTATATATATTTTCATTATATA
1 TATATTATTTATTTTACTATAT-TT-TATCTATTAT-ATTATATA
87856331 TATATTATTTATTTTACTATATTTTATCTATTATATTAT-TA
1 TATATTATTTATTTTACTATATTTTATCTATTATATTATATA
87856372 TATATT-TTTAATTTT
1 TATATTATTT-ATTTT
87856387 TATCATATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
40 3 0.06
41 13 0.26
42 5 0.10
43 8 0.16
44 8 0.16
45 13 0.26
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (42 bp):
TATATTATTTATTTTACTATATTTTATCTATTATATTATATA
Found at i:87856434 original size:37 final size:36
Alignment explanation
Indices: 87856391--87856469 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 36
87856381 AATTTTTATC
* *
87856391 ATATATTTTTTTTA-TATAAATTATTTATATCTATATT
1 ATATATTTTTTTTAGTACAAATTATTT-T-TATATATT
*
87856428 ATATA-TTTTTTTAGTACATATTATTTTTATATATT
1 ATATATTTTTTTTAGTACAAATTATTTTTATATATT
87856463 ATATATT
1 ATATATT
87856470 ATATTATTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
35 12 0.32
36 10 0.27
37 15 0.41
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (36 bp):
ATATATTTTTTTTAGTACAAATTATTTTTATATATT
Found at i:87856482 original size:9 final size:8
Alignment explanation
Indices: 87856323--87856490 Score: 58
Period size: 7 Copynumber: 22.9 Consensus size: 8
87856313 ATATATTTTC
87856323 ATTATA-T
1 ATTATATT
87856330 A-TATATT
1 ATTATATT
87856337 ATT-TATT
1 ATTATATT
87856344 -TTACTA-T
1 ATTA-TATT
*
87856351 ATTTTATCT
1 ATTATAT-T
87856360 ATTATATT
1 ATTATATT
87856368 ATTATA-T
1 ATTATATT
87856375 ATT-T-TT
1 ATTATATT
87856381 AATT-T-TT
1 -ATTATATT
87856388 ATCATATATT
1 AT--TATATT
*
87856398 -TT-TTTT
1 ATTATATT
*
87856404 ATATAAATT
1 AT-TATATT
87856413 ATT-TA-T
1 ATTATATT
87856419 ATCTATATT
1 AT-TATATT
87856428 A-TATATT
1 ATTATATT
87856435 -TT-T-TT
1 ATTATATT
* *
87856440 AGTACA-T
1 ATTATATT
87856447 ATTAT-TT
1 ATTATATT
87856454 -TTATA-T
1 ATTATATT
87856460 ATTATA-T
1 ATTATATT
87856467 ATTATATT
1 ATTATATT
87856475 ATTCATATT
1 ATT-ATATT
87856484 ATTATAT
1 ATTATAT
87856491 ATTTTATTTA
Statistics
Matches: 123, Mismatches: 10, Indels: 55
0.65 0.05 0.29
Matches are distributed among these distances:
5 2 0.02
6 23 0.19
7 48 0.39
8 25 0.20
9 23 0.19
10 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.62
Consensus pattern (8 bp):
ATTATATT
Found at i:87856487 original size:17 final size:16
Alignment explanation
Indices: 87856323--87856490 Score: 58
Period size: 15 Copynumber: 11.4 Consensus size: 16
87856313 ATATATTTTC
87856323 ATTATA-TA-TATATT
1 ATTATATTATTATATT
87856337 ATT-TATT-TTACTA-T
1 ATTATATTATTA-TATT
*
87856351 ATTTTATCTATTATATT
1 ATTATAT-TATTATATT
87856368 ATTATA-TATT-T-TT
1 ATTATATTATTATATT
87856381 AATT-T-TTATCATATATT
1 -ATTATATTAT--TATATT
* *
87856398 -TT-TTTTATATAAATT
1 ATTATATTAT-TATATT
87856413 ATT-TA-TATCTATATT
1 ATTATATTAT-TATATT
87856428 A-TATATT-TT-T-TT
1 ATTATATTATTATATT
* *
87856440 AGTACA-TATTAT-TT
1 ATTATATTATTATATT
87856454 -TTATA-TATTATA-T
1 ATTATATTATTATATT
87856467 ATTATATTATTCATATT
1 ATTATATTATT-ATATT
87856484 ATTATAT
1 ATTATAT
87856491 ATTTTATTTA
Statistics
Matches: 121, Mismatches: 8, Indels: 47
0.69 0.05 0.27
Matches are distributed among these distances:
12 4 0.03
13 24 0.20
14 24 0.20
15 35 0.29
16 15 0.12
17 19 0.16
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.62
Consensus pattern (16 bp):
ATTATATTATTATATT
Found at i:87856607 original size:23 final size:22
Alignment explanation
Indices: 87856576--87856637 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
87856566 TACCTATTAG
87856576 ATTATTATTATTTTATATATTCTT
1 ATTA-TATTATTTTATATATT-TT
* * *
87856600 CTTATATTATATTATTTATTTT
1 ATTATATTATTTTATATATTTT
*
87856622 ATTACATATATTTTAT
1 ATTATAT-TATTTTAT
87856638 TACTATATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 7 0.23
23 21 0.68
24 3 0.10
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.65
Consensus pattern (22 bp):
ATTATATTATTTTATATATTTT
Found at i:87856633 original size:14 final size:15
Alignment explanation
Indices: 87856616--87856652 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
87856606 TTATATTATT
87856616 TATTTTATTAC-ATA
1 TATTTTATTACTATA
87856630 TATTTTATTACTATA
1 TATTTTATTACTATA
*
87856645 TAATTTAT
1 TATTTTAT
87856653 AATATTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTTTATTACTATA
Found at i:87856645 original size:34 final size:33
Alignment explanation
Indices: 87856607--87856671 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
87856597 CTTCTTATAT
* **
87856607 TATATTATTTATTTTATTACATATATTTTATTAC
1 TATATAATTTATAATATTACATAT-TTTTATTAC
87856641 TATATAATTTATAATATTACATATTTTTATT
1 TATATAATTTATAATATTACATATTTTTATT
87856672 TGTAAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 7 0.25
34 21 0.75
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (33 bp):
TATATAATTTATAATATTACATATTTTTATTAC
Found at i:87856651 original size:15 final size:14
Alignment explanation
Indices: 87856619--87856652 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
87856609 TATTATTTAT
*
87856619 TTTATTACATATAT
1 TTTATTACATATAA
87856633 TTTATTACTATATAA
1 TTTATTAC-ATATAA
87856648 TTTAT
1 TTTAT
87856653 AATATTACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTATTACATATAA
Found at i:87856687 original size:34 final size:32
Alignment explanation
Indices: 87856621--87856709 Score: 79
Period size: 33 Copynumber: 2.6 Consensus size: 32
87856611 TTATTTATTT
*
87856621 TATTACATATATTTTATTACTATATAATTTATAA
1 TATTACATAT-TTTTATTACTAAATAATTTAT-A
** *
87856655 TATTACATATTTTTATTTGTAAATTATATTATA
1 TATTACATATTTTTATTACTAAATAAT-TTATA
*
87856688 TTTTACTATATTTCTTTATTAC
1 TATTAC-ATA-TT-TTTATTAC
87856710 CTTTATTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
33 19 0.43
34 17 0.39
35 2 0.05
36 6 0.14
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (32 bp):
TATTACATATTTTTATTACTAAATAATTTATA
Found at i:87862058 original size:29 final size:29
Alignment explanation
Indices: 87861995--87862062 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
87861985 TAATCAACCA
87861995 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
87862024 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
87862053 CGCACACTTA
1 CGCACACTTA
87862063 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:87862206 original size:29 final size:30
Alignment explanation
Indices: 87862171--87862242 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
87862161 ATCAACCGCA
*
87862171 CACACTTAGTGCCATGTAC-TTTAAACTCG
1 CACACTTAGTGCCATGTACATTTAAACCCG
87862200 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCG
87862229 CACACTTAGTGCCA
1 CACACTTAGTGCCA
87862243 ATCTCATGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 31 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCG
Found at i:87870371 original size:29 final size:30
Alignment explanation
Indices: 87870339--87870410 Score: 98
Period size: 29 Copynumber: 2.5 Consensus size: 30
87870329 ATCAACCGCA
87870339 CACACTTAGTGCCATGTAC-TTT-AACCTCG
1 CACACTTAGTGCCATGTACATTTAAACC-CG
87870368 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCG
87870397 CACACTTAGTGCCA
1 CACACTTAGTGCCA
87870411 ATCTCATGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 27 0.71
30 5 0.13
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCG
Found at i:87880536 original size:83 final size:87
Alignment explanation
Indices: 87880437--87880632 Score: 235
Period size: 83 Copynumber: 2.3 Consensus size: 87
87880427 ATTTATGATG
* * *
87880437 AAGCAGATCCAAGATGATTTGGCATTCTTGT-GTTTACAAGGAACAAATCG-AGAACATAGCAGA
1 AAGCAAATCCAAGATGATTTGGCATCCTTGTAGTTGA-AAGGAACAAATCGAAG-ACATAGCAGA
*
87880500 TTTGACTCTCA-GATG-TT-CTC-A
64 TTTGACTCTCACG-TGTTTACACTA
* *
87880521 AA-CAAATCCAAGATGATTTGGTATCCTTGTAGTTGAAAGGAACAAATCGAAGACATAGCTGATT
1 AAGCAAATCCAAGATGATTTGGCATCCTTGTAGTTGAAAGGAACAAATCGAAGACATAGCAGATT
* *
87880585 TGGCTTTCACGTGTTTACACTA
66 TGACTCTCACGTGTTTACACTA
*
87880607 AAGCAAATCTAAGATGATTTGGCATC
1 AAGCAAATCCAAGATGATTTGGCATC
87880633 TCTGTATTGT
Statistics
Matches: 95, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
83 58 0.61
84 11 0.12
85 2 0.02
86 3 0.03
87 21 0.22
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (87 bp):
AAGCAAATCCAAGATGATTTGGCATCCTTGTAGTTGAAAGGAACAAATCGAAGACATAGCAGATT
TGACTCTCACGTGTTTACACTA
Found at i:87880653 original size:87 final size:85
Alignment explanation
Indices: 87880437--87880655 Score: 213
Period size: 83 Copynumber: 2.6 Consensus size: 85
87880427 ATTTATGATG
* *
87880437 AAGCAGATCCAAGATGATTTGGCAT-TCTTGTGTT-TACA-AGGAACAAATCGAGAACATAGCAG
1 AAGCAAATCCAAGATGATTTGGCATCTCTTGTATTGT-CAGA-GAACAAATCGAGAACATAGCAG
*
87880499 ATTTGACTCTCAGATGTTCTCA
64 ATTTGACTCTCAGATGTTCACA
* ** *
87880521 AA-CAAATCCAAGATGATTTGGTATC-CTTGTAGTTGAAAG-GAACAAATCGA-AGACATAGCTG
1 AAGCAAATCCAAGATGATTTGGCATCTCTTGTA-TTGTCAGAGAACAAATCGAGA-ACATAGCAG
* *
87880582 ATTTGGCTTTCACG-TGTTTACACTA
64 ATTTGACTCTCA-GATG-TT-CAC-A
*
87880607 AAGCAAATCTAAGATGATTTGGCATCTC-TGTATTGTCAGAGAACAAATC
1 AAGCAAATCCAAGATGATTTGGCATCTCTTGTATTGTCAGAGAACAAATC
87880656 AAAGTTTGGC
Statistics
Matches: 110, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
82 1 0.01
83 56 0.51
84 8 0.07
85 2 0.02
86 8 0.07
87 34 0.31
88 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (85 bp):
AAGCAAATCCAAGATGATTTGGCATCTCTTGTATTGTCAGAGAACAAATCGAGAACATAGCAGAT
TTGACTCTCAGATGTTCACA
Found at i:87880665 original size:289 final size:289
Alignment explanation
Indices: 87880146--87880801 Score: 1079
Period size: 289 Copynumber: 2.3 Consensus size: 289
87880136 ATAGATCTGG
87880146 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGAC-TAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAG
*
87880210 ATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
66 ATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTGACAAGGAAC
** * *
87880275 AAATCAAAACCATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGG
131 AAATCAAAACCATAGCTGATTTGGCTTTCACGTGTTTACACTAAAGCAAATCTAAGATGATTTGG
* * * ** *
87880340 CATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCCTCTCTATATTCGATGGAGGG-TGAACA
196 CATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCCTCTCCATATCCGACAGAGGGCAG-ACA
87880404 CATAGCAGATCTAACCTTCAGATATTTATGA
260 CATAGCAGATCTAACCTTCAGATATTTAT-A
*
87880435 -TGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGAACATAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAG
87880499 ATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTAGTTGA-AAGGAA
66 ATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGT-GTTGACAAGGAA
*
87880563 CAAATCGAAGA-CATAGCTGATTTGGCTTTCACGTGTTTACACTAAAGCAAATCTAAGATGATTT
130 CAAATC-AAAACCATAGCTGATTTGGCTTTCACGTGTTTACACTAAAGCAAATCTAAGATGATTT
*
87880627 GGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATCCGACAGAGGGCAGAC
194 GGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCCTCTCCATATCCGACAGAGGGCAGAC
* * *
87880692 ACATGGCAGATCTAACCTTTAGATGTTTATA
259 ACATAGCAGATCTAACCTTCAGATATTTATA
*
87880723 CTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAG
1 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAG
87880788 ATTTGACTCTCAGA
66 ATTTGACTCTCAGA
87880802 AGTCCTCACA
Statistics
Matches: 343, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
288 57 0.17
289 278 0.81
290 8 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (289 bp):
CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAG
ATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTGACAAGGAAC
AAATCAAAACCATAGCTGATTTGGCTTTCACGTGTTTACACTAAAGCAAATCTAAGATGATTTGG
CATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCCTCTCCATATCCGACAGAGGGCAGACAC
ATAGCAGATCTAACCTTCAGATATTTATA
Found at i:87882602 original size:21 final size:21
Alignment explanation
Indices: 87882569--87882630 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
87882559 GTTTATCATA
*
87882569 TATTTTTTATATATATATATTT
1 TATTTTGT-TATATATATATTT
* *
87882591 TATTTTGTTATATTTGTATTT
1 TATTTTGTTATATATATATTT
*
87882612 TACTATATGTTATATATAT
1 TA-T-TTTGTTATATATAT
87882631 TTTCATTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
21 13 0.41
22 8 0.25
23 11 0.34
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (21 bp):
TATTTTGTTATATATATATTT
Found at i:87882660 original size:41 final size:40
Alignment explanation
Indices: 87882582--87882694 Score: 122
Period size: 41 Copynumber: 2.8 Consensus size: 40
87882572 TTTTTATATA
* * * *
87882582 TATATATTTTATT-TTGTTATATTTGTATTTTACTATATGT
1 TATATATTATATTATT-ATATATTTTTATTTTACTATATCT
*
87882622 TATATA-TATTTTCATTATATATTATTTATTTTACTATATCT
1 TATATATTATATT-ATTATATATT-TTTATTTTACTATATCT
*
87882663 TATCTATTATATTATTATATATTTTTAATTTT
1 TATATATTATATTATTATATATTTTT-ATTTT
87882695 TATCATATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
39 4 0.07
40 15 0.25
41 37 0.61
42 5 0.08
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (40 bp):
TATATATTATATTATTATATATTTTTATTTTACTATATCT
Found at i:87882665 original size:19 final size:19
Alignment explanation
Indices: 87882573--87882725 Score: 83
Period size: 22 Copynumber: 8.1 Consensus size: 19
87882563 ATCATATATT
87882573 TTTTA-TATATATATATTTTA
1 TTTTACTATATAT-TA-TTTA
* *
87882593 TTTT-GT-TATATT-TGTA
1 TTTTACTATATATTATTTA
*
87882609 TTTTACTATATGTTATATATA
1 TTTTACTATATATTAT-T-TA
*
87882630 TTTTCATTATATATTATTTA
1 TTTT-ACTATATATTATTTA
*
87882650 TTTTACTATATCTTATCTATTA
1 TTTTACTATATATTA--T-TTA
* *
87882672 TATTATTATATATT-TTTAA
1 TTTTACTATATATTATTT-A
87882691 TTTT--TATCATA-TATTT-
1 TTTTACTAT-ATATTATTTA
87882707 TTTTA-TATATATTATTTA
1 TTTTACTATATATTATTTA
87882725 T
1 T
87882726 ATCTATATTA
Statistics
Matches: 105, Mismatches: 12, Indels: 34
0.70 0.08 0.23
Matches are distributed among these distances:
16 14 0.13
17 13 0.12
18 15 0.14
19 20 0.19
20 11 0.10
21 8 0.08
22 24 0.23
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTACTATATATTATTTA
Found at i:87882708 original size:13 final size:12
Alignment explanation
Indices: 87882678--87882766 Score: 53
Period size: 13 Copynumber: 7.4 Consensus size: 12
87882668 ATTATATTAT
87882678 TATATATTTTTA
1 TATATATTTTTA
*
87882690 -AT-T-TTTATCA
1 TATATATTT-TTA
*
87882700 TATATTTTTTTA
1 TATATATTTTTA
87882712 TATATATTATTTA
1 TATATATT-TTTA
* *
87882725 TATCTA-TATTA
1 TATATATTTTTA
87882736 TATAT-TTTTAGTA
1 TATATATTTT--TA
*
87882749 CATATTATTTTTA
1 TATA-TATTTTTA
87882762 TATAT
1 TATAT
87882767 TATATATTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 20
0.67 0.10 0.23
Matches are distributed among these distances:
9 3 0.05
10 3 0.05
11 13 0.22
12 12 0.21
13 22 0.38
14 1 0.02
15 4 0.07
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (12 bp):
TATATATTTTTA
Found at i:87882735 original size:56 final size:58
Alignment explanation
Indices: 87882636--87882800 Score: 155
Period size: 56 Copynumber: 2.9 Consensus size: 58
87882626 TATATTTTCA
*
87882636 TTATATATTATTTATTTTACTATATCTTATCTATTATATTATTATATATTTTTAATTT
1 TTATATATTATTTATTTTACTATATATTATCTATTATATTATTATATATTTTTAATTT
* * * **
87882694 TTATCATA-TATTT-TTTTA-TATATATTATTTA-TATCTATATTATATATTTTTAGTAC
1 TTAT-ATATTATTTATTTTACTATATATTATCTATTATAT-TATTATATATTTTTAATTT
* * * *
87882750 ATAT-TATT-TTTA-TATATTATATATTATATTATTCATATTATTATATATTTT
1 TTATATATTATTTATTTTACTATATATTAT-CTATT-ATATTATTATATATTTT
87882801 ATTTATAAAG
Statistics
Matches: 90, Mismatches: 9, Indels: 17
0.78 0.08 0.15
Matches are distributed among these distances:
54 8 0.09
55 15 0.17
56 33 0.37
57 19 0.21
58 12 0.13
59 3 0.03
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (58 bp):
TTATATATTATTTATTTTACTATATATTATCTATTATATTATTATATATTTTTAATTT
Found at i:87882753 original size:20 final size:22
Alignment explanation
Indices: 87882712--87882778 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 22
87882702 TATTTTTTTA
87882712 TATATATTATTTATATCTATAT
1 TATATATTATTTATATCTATAT
87882734 TATATATT-TTTAGTA-C-ATAT
1 TATATATTATTTA-TATCTATAT
* * *
87882754 TAT-TTTTATATAT-TATATAT
1 TATATATTATTTATATCTATAT
87882774 TATAT
1 TATAT
87882779 TATTCATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
19 4 0.11
20 17 0.46
21 6 0.16
22 10 0.27
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (22 bp):
TATATATTATTTATATCTATAT
Found at i:87882754 original size:35 final size:34
Alignment explanation
Indices: 87882700--87882797 Score: 112
Period size: 34 Copynumber: 2.9 Consensus size: 34
87882690 ATTTTTATCA
* * *
87882700 TATATTTTTTTATATATATTATTTATATCTATAT
1 TATATATTTTTATACATATTATTTATATATATAT
87882734 TATATATTTTTAGTACATATTATTT-T-TATATAT
1 TATATATTTTTA-TACATATTATTTATATATATAT
*
87882767 TATATATTATATTATTCATATTA-TTATATAT
1 TATATATT-T-TTATACATATTATTTATATAT
87882798 TTTATTTATA
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
33 16 0.29
34 22 0.40
35 17 0.31
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (34 bp):
TATATATTTTTATACATATTATTTATATATATAT
Found at i:87882791 original size:17 final size:16
Alignment explanation
Indices: 87882575--87882795 Score: 72
Period size: 15 Copynumber: 14.4 Consensus size: 16
87882565 CATATATTTT
87882575 TTATA-TATATATATT-
1 TTATATTAT-TATATTA
* *
87882590 TTATTTTGTTATATT-
1 TTATATTATTATATTA
* * *
87882605 TGTATTTTACTATA-TG
1 T-TATATTATTATATTA
*
87882621 TTATATATATTTTCATTA
1 TTATAT-TATTAT-ATTA
87882639 -TATATTATT-TATT-
1 TTATATTATTATATTA
87882652 TTACTA-TATCT-TATCTA
1 TTA-TATTAT-TATAT-TA
87882669 TTATATTATTATA-TA
1 TTATATTATTATATTA
87882684 TT-T-TTAATT-T-TTA
1 TTATATT-ATTATATTA
* * *
87882697 TCATA-TATTTTTTTA
1 TTATATTATTATATTA
87882712 TATATATTATT-TA-TA
1 T-TATATTATTATATTA
*
87882727 TCTATATTA-TATATTT
1 T-TATATTATTATATTA
*
87882743 TTAGTACATATTAT-TT-
1 TTA-TA-TTATTATATTA
87882759 TTATA-TATTATA-TA
1 TTATATTATTATATTA
87882773 TTATATTATTCATATTA
1 TTATATTATT-ATATTA
87882790 TTATAT
1 TTATAT
87882796 ATTTTATTTA
Statistics
Matches: 161, Mismatches: 14, Indels: 60
0.69 0.06 0.26
Matches are distributed among these distances:
13 16 0.10
14 21 0.13
15 51 0.32
16 39 0.24
17 30 0.19
18 4 0.02
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (16 bp):
TTATATTATTATATTA
Found at i:87882911 original size:13 final size:13
Alignment explanation
Indices: 87882893--87882925 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
87882883 TATTATTATT
87882893 TTATATATTCTTC
1 TTATATATTCTTC
87882906 -T-TATATTCTTC
1 TTATATATTCTTC
87882917 TTATATATT
1 TTATATATT
87882926 TTATTACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
11 10 0.56
12 2 0.11
13 6 0.33
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATATATTCTTC
Found at i:87882957 original size:15 final size:15
Alignment explanation
Indices: 87882918--87882958 Score: 66
Period size: 14 Copynumber: 2.8 Consensus size: 15
87882908 ATATTCTTCT
87882918 TATATATTTTATTAC
1 TATATATTTTATTAC
87882933 -ATATATTTTATTAC
1 TATATATTTTATTAC
*
87882947 TATATAATTTAT
1 TATATATTTTAT
87882959 AATATTACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (15 bp):
TATATATTTTATTAC
Found at i:87883557 original size:22 final size:22
Alignment explanation
Indices: 87883529--87883570 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
87883519 GATAAAGCAT
87883529 ATATATATTGTATCCAATTTGC
1 ATATATATTGTATCCAATTTGC
*
87883551 ATATATATTGTATCTAATTT
1 ATATATATTGTATCCAATTT
87883571 CTTATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (22 bp):
ATATATATTGTATCCAATTTGC
Found at i:87883580 original size:22 final size:23
Alignment explanation
Indices: 87883525--87883580 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
87883515 AAATGATAAA
87883525 GCATATATATATTGTATCCAATTT
1 GCATATA-ATATTGTATCCAATTT
*
87883549 GCATAT-ATATTGTATCTAATTT
1 GCATATAATATTGTATCCAATTT
*
87883571 -CTTATAATAT
1 GCATATAATAT
87883581 GTGAAACAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.14
22 19 0.66
24 6 0.21
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (23 bp):
GCATATAATATTGTATCCAATTT
Found at i:87885903 original size:14 final size:16
Alignment explanation
Indices: 87885884--87885942 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 16
87885874 TTAAATGTAC
87885884 ATAAT-AATAAATAA-
1 ATAATAAATAAATAAT
87885898 ATAATACAATATAATATAT
1 ATAATA-AATA-AATA-AT
87885917 ATAAT-AA-AAATAAT
1 ATAATAAATAAATAAT
*
87885931 ATAATGAATAAA
1 ATAATAAATAAA
87885943 ACATATATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
14 12 0.32
15 6 0.16
16 8 0.21
17 6 0.16
18 1 0.03
19 5 0.13
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (16 bp):
ATAATAAATAAATAAT
Found at i:87885940 original size:9 final size:8
Alignment explanation
Indices: 87885884--87885940 Score: 50
Period size: 9 Copynumber: 7.1 Consensus size: 8
87885874 TTAAATGTAC
87885884 ATAATAAT
1 ATAATAAT
87885892 A-AATAA-
1 ATAATAAT
87885898 ATAATACAAT
1 ATAAT--AAT
87885908 ATAATATAT
1 ATAATA-AT
87885917 ATAATAA-
1 ATAATAAT
87885924 A-AATAAT
1 ATAATAAT
87885931 ATAATGAAT
1 ATAAT-AAT
87885940 A
1 A
87885941 AAACATATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 15
0.73 0.00 0.27
Matches are distributed among these distances:
6 6 0.15
7 10 0.24
8 6 0.15
9 14 0.34
10 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (8 bp):
ATAATAAT
Found at i:87888971 original size:26 final size:26
Alignment explanation
Indices: 87888940--87889047 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
87888930 TGAAATGTCC
* *
87888940 ATCATGGACCATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
87888966 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
87888992 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
87889018 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87889044 ATCA
1 ATCA
87889048 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87889492 original size:30 final size:30
Alignment explanation
Indices: 87889449--87889509 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
87889439 TATAATAGCC
* *
87889449 ATTAGGACTAAATTAAAACAAATATAAAAT
1 ATTAGGACCAAATTAAAACAAAAATAAAAT
* *
87889479 ATTAGGGCCAAATTAAAATAAAAATAAAAT
1 ATTAGGACCAAATTAAAACAAAAATAAAAT
87889509 A
1 A
87889510 AATTGTAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.61, C:0.07, G:0.08, T:0.25
Consensus pattern (30 bp):
ATTAGGACCAAATTAAAACAAAAATAAAAT
Found at i:87890781 original size:44 final size:44
Alignment explanation
Indices: 87890720--87891101 Score: 539
Period size: 44 Copynumber: 8.7 Consensus size: 44
87890710 AAACTTAGGA
* * *
87890720 ACGCCAGATCTGTTATCTTCTATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
87890764 ATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
87890808 ACACTAAATCTGCTATCTTCGATCTGTTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
87890852 ATGTCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
87890896 ACTCCAAATCTGCTATCTTCAATCTACTCTTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTC-TCTGACAATACAGAG
* * *
87890941 ATGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGCG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * *
87890985 ACGCCAAATCTCCTATCTTCAATCTGCTCCCTAACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
87891029 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAT
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
87891073 ACGCCAAGTCTGCTATCTTCGATCTGCTC
1 ACGCCAAATCTGCTATCTTCGATCTGCTC
87891102 CTTGTAAACG
Statistics
Matches: 294, Mismatches: 43, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
44 255 0.87
45 39 0.13
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (44 bp):
ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
Found at i:87890971 original size:177 final size:176
Alignment explanation
Indices: 87890720--87891097 Score: 549
Period size: 177 Copynumber: 2.1 Consensus size: 176
87890710 AAACTTAGGA
* * * *
87890720 ACGCCAGATCTGTTATCTTCTATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTATCTTCG
1 ACGCCAAATCTGCTATCTTCAATCTACTCTCTGACAATACAGAGATGCCAAATCTACTATCTTCG
* * * * * *
87890785 ATCTGCTCTCTGACAATACAGAGACACTAAATCTGCTATCTTCGATCTGTTCTCTGACAATACAG
66 ATCTGCTCTCTGACAATACAGAGACACCAAATCTCCTATCTTCAATCTGCTCCCTAACAATACAG
* * *
87890850 AGATGTCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAG
131 AGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* **
87890896 ACTCCAAATCTGCTATCTTCAATCTACTCTTCTGACAATACAGAGATGCCAAATCTGTTATCTTC
1 ACGCCAAATCTGCTATCTTCAATCTACTC-TCTGACAATACAGAGATGCCAAATCTACTATCTTC
* *
87890961 GATCTGCTCTCTGACAATACAGCGACGCCAAATCTCCTATCTTCAATCTGCTCCCTAACAATACA
65 GATCTGCTCTCTGACAATACAGAGACACCAAATCTCCTATCTTCAATCTGCTCCCTAACAATACA
* *
87891026 GAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAT
130 GAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
87891073 ACGCCAAGTCTGCTATCTTCGATCT
1 ACGCCAAATCTGCTATCTTCAATCT
87891098 GCTCCTTGTA
Statistics
Matches: 178, Mismatches: 23, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
176 24 0.13
177 154 0.87
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (176 bp):
ACGCCAAATCTGCTATCTTCAATCTACTCTCTGACAATACAGAGATGCCAAATCTACTATCTTCG
ATCTGCTCTCTGACAATACAGAGACACCAAATCTCCTATCTTCAATCTGCTCCCTAACAATACAG
AGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
Found at i:87891234 original size:44 final size:43
Alignment explanation
Indices: 87891177--87891259 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
87891167 ATCTACTATG
* **
87891177 TCTTCAATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
1 TCTTCAATCTGCTCTCCGAC-AATACAGAGATGCCAAATCTGTT
* * *
87891221 TCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCAATCTGCTCTCCGACAATACAGAGATGCCAAATC
87891260 AACTTAGATC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.33
Consensus pattern (43 bp):
TCTTCAATCTGCTCTCCGACAATACAGAGATGCCAAATCTGTT
Found at i:87891524 original size:220 final size:220
Alignment explanation
Indices: 87891088--87891511 Score: 632
Period size: 220 Copynumber: 1.9 Consensus size: 220
87891078 AAGTCTGCTA
* * *
87891088 TCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTGCTTCGATGCAAAAA
1 TCTTCGACCTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGCAAAAA
* * * * *
87891153 TATTCGAAGGTTAGATCTACTATGTCTTCAATCTGCTCTCCGTCAAATATGGAGATGCCAAATCT
66 CATCCGAAGGTTAGATCTACTATGTCTCCAATCTACTCTCCGTCAAATACGGAGATGCCAAATCT
* *
87891218 GTTTCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCAACTTAGATCTTCTTCAGCGTAA
131 GTTTCTTCGATTTGCTCTCTGACAATACAAAGATGCCAAATCAACTTAGATCTACTTCAGCGTAA
*
87891283 ACACGTGAAAGCCAAATCTGCTTTG
196 ACACCTGAAAGCCAAATCTGCTTTG
**
87891308 TCTTCGACCTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAA
1 TCTTCGACCTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGCAAAAA
* * * * *
87891373 CATCCGAAGGTTAGATCTGCTATGTCTCCGATCTACTCTCTGTCGAATACGGAGATGCCAAATTT
66 CATCCGAAGGTTAGATCTACTATGTCTCCAATCTACTCTCCGTCAAATACGGAGATGCCAAATCT
* * ** * *
87891438 GTTTCTTCTATTTGTTCTCTGGTAATACAAAGATGCCAAATCATCTTGGATCTACTTCAGCGTAA
131 GTTTCTTCGATTTGCTCTCTGACAATACAAAGATGCCAAATCAACTTAGATCTACTTCAGCGTAA
87891503 ACACCTGAA
196 ACACCTGAA
87891512 GGTCAGATCT
Statistics
Matches: 180, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
220 180 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (220 bp):
TCTTCGACCTGCTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGCAAAAA
CATCCGAAGGTTAGATCTACTATGTCTCCAATCTACTCTCCGTCAAATACGGAGATGCCAAATCT
GTTTCTTCGATTTGCTCTCTGACAATACAAAGATGCCAAATCAACTTAGATCTACTTCAGCGTAA
ACACCTGAAAGCCAAATCTGCTTTG
Found at i:87903550 original size:14 final size:16
Alignment explanation
Indices: 87903531--87903611 Score: 55
Period size: 16 Copynumber: 5.0 Consensus size: 16
87903521 TTAAATGTAC
87903531 ATAAT-AATAAATAA-
1 ATAATAAATAAATAAT
87903545 ATAATACAATATAATATAT
1 ATAATA-AATA-AATA-AT
87903564 ATAAT-AA-AAATAAT
1 ATAATAAATAAATAAT
*
87903578 ATAATGAATAAA-ACAT
1 ATAATAAATAAATA-AT
*
87903594 ATATTGAAATAACATAAT
1 ATAAT-AAATAA-ATAAT
87903612 GTATGATAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
14 12 0.22
15 7 0.13
16 14 0.26
17 11 0.20
18 4 0.07
19 6 0.11
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (16 bp):
ATAATAAATAAATAAT
Found at i:87903587 original size:9 final size:8
Alignment explanation
Indices: 87903531--87903587 Score: 50
Period size: 9 Copynumber: 7.1 Consensus size: 8
87903521 TTAAATGTAC
87903531 ATAATAAT
1 ATAATAAT
87903539 A-AATAA-
1 ATAATAAT
87903545 ATAATACAAT
1 ATAAT--AAT
87903555 ATAATATAT
1 ATAATA-AT
87903564 ATAATAA-
1 ATAATAAT
87903571 A-AATAAT
1 ATAATAAT
87903578 ATAATGAAT
1 ATAAT-AAT
87903587 A
1 A
87903588 AAACATATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 15
0.73 0.00 0.27
Matches are distributed among these distances:
6 6 0.15
7 10 0.24
8 6 0.15
9 14 0.34
10 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (8 bp):
ATAATAAT
Found at i:87904049 original size:30 final size:30
Alignment explanation
Indices: 87904006--87904064 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
87903996 TATAATAGCC
* *
87904006 ATTAGGACTAAATTGAAACAAATATAAAAT
1 ATTAGGACCAAATTGAAACAAAAATAAAAT
* *
87904036 ATTAGGGCCAAATTGAAATAAAAATAAAA
1 ATTAGGACCAAATTGAAACAAAAATAAAA
87904065 CAAAATTGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.24
Consensus pattern (30 bp):
ATTAGGACCAAATTGAAACAAAAATAAAAT
Found at i:87905725 original size:18 final size:19
Alignment explanation
Indices: 87905690--87905727 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
87905680 TATAGAAAAT
*
87905690 ACAAAAAAGAAAAGAAACA
1 ACAAAAAACAAAAGAAACA
87905709 ACAAAAAACAAAA-AAACA
1 ACAAAAAACAAAAGAAACA
87905727 A
1 A
87905728 AATTGATAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.82, C:0.13, G:0.05, T:0.00
Consensus pattern (19 bp):
ACAAAAAACAAAAGAAACA
Found at i:87905915 original size:15 final size:15
Alignment explanation
Indices: 87905895--87905925 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
87905885 ATATCTACTG
*
87905895 AAATAGATGAATTAC
1 AAATAGACGAATTAC
87905910 AAATAGACGAATTAC
1 AAATAGACGAATTAC
87905925 A
1 A
87905926 TACAACATCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.10, G:0.13, T:0.23
Consensus pattern (15 bp):
AAATAGACGAATTAC
Found at i:87907784 original size:18 final size:18
Alignment explanation
Indices: 87907761--87907796 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
87907751 TACAAAAATT
*
87907761 AAAAAATGAAATTAAACA
1 AAAAAATAAAATTAAACA
87907779 AAAAAATAAAATTAAACA
1 AAAAAATAAAATTAAACA
87907797 GTCTATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.75, C:0.06, G:0.03, T:0.17
Consensus pattern (18 bp):
AAAAAATAAAATTAAACA
Found at i:87909228 original size:29 final size:30
Alignment explanation
Indices: 87909142--87909258 Score: 105
Period size: 33 Copynumber: 3.7 Consensus size: 30
87909132 TATATAAAAA
*
87909142 ATTATTTATCGTATATTATTT-TATTATATAT
1 ATTATTTAT--TATGTTATTTATATTATATAT
*
87909173 -TTATATTATTATGTTATCTTGTCTATTATATAT
1 ATTAT-TTATTATGTTA--TT-TATATTATATAT
*
87909206 ATTATCTATTAT-TTATTTATATTTTATCATAT
1 ATTATTTATTATGTTATTTATA--TTAT-ATAT
87909238 ATTATTTATTATGTTATTTAT
1 ATTATTTATTATGTTATTTAT
87909259 CTTTATCTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 18
0.77 0.04 0.19
Matches are distributed among these distances:
29 9 0.12
30 6 0.08
31 10 0.14
32 19 0.26
33 24 0.33
34 4 0.06
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (30 bp):
ATTATTTATTATGTTATTTATATTATATAT
Found at i:87926079 original size:218 final size:215
Alignment explanation
Indices: 87925606--87926044 Score: 604
Period size: 217 Copynumber: 2.1 Consensus size: 215
87925596 TAGGCAAAGC
* * * * * *
87925606 ATAGCAGATTGACCTTCAGGTGTTTACGCTGAAGCAGATCTAGGATGATTTGGCATCTCTGTATT
1 ATAGCAGATTGACCTTCAAGTGTTAATGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGAATT
* *
87925671 ATCAGAGAGCAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGATCAGATCAAAGACA
66 ATCAGAGAACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACA
*
87925736 TAGTAGATCTAACCTTCAGAGTTTTTGCATCGAAGCAAATCCAAGATGATTTGGCATCCTTACGT
131 TAGCAGATCTAACCTTCAGAGTTTTTGCATCGAAGCAAATCCAAGATGATTTGGCATCCTTACGT
*
87925801 TTACAAGGAGCAGATCGAAGG
196 TTACAAGGAGCAAATCGAA-G
*
87925822 CATAGCAGATTGACCTTCAAGTGTTAATGCTGAAGCAGATCCAAGATGATTTGGCGTCTCTGAAT
1 -ATAGCAGATTGACCTTCAAGTGTTAATGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGAAT
* * * *
87925887 TGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGATGGAGAGCA-ATCGAAGA
65 TATCAGAGAAC-AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGA
* ***
87925951 CATAGCAGATCTAACCTTCGGA-TATTTTTTTTCGAAG-AAGAT-CAAGATGA-TTGGCATCCTT
129 CATAGCAGATCTAACCTTCAGAGT-TTTTGCATCGAAGCAA-ATCCAAGATGATTTGGCATCCTT
*
87926012 GCGTTTAC-AGGAGCAAATCGAA-
192 ACGTTTACAAGGAGCAAATCGAAG
87926034 ATAGCAGATTG
1 ATAGCAGATTG
87926045 CGTCTCTGTA
Statistics
Matches: 199, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
211 11 0.06
214 13 0.07
215 18 0.09
216 11 0.06
217 105 0.53
218 41 0.21
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (215 bp):
ATAGCAGATTGACCTTCAAGTGTTAATGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGAATT
ATCAGAGAACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACA
TAGCAGATCTAACCTTCAGAGTTTTTGCATCGAAGCAAATCCAAGATGATTTGGCATCCTTACGT
TTACAAGGAGCAAATCGAAG
Found at i:87926138 original size:44 final size:44
Alignment explanation
Indices: 87926067--87926167 Score: 157
Period size: 44 Copynumber: 2.3 Consensus size: 44
87926057 TTAAGACATA
* * *
87926067 GAAGGTAGCAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATC
1 GAAGATAGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATC
* *
87926111 GAAGATAGCAGATTTGGCGTCTTTGTATTGCCAGAGAGCAGATT
1 GAAGATAGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATC
87926155 GAAGATAGCAGAT
1 GAAGATAGCAGAT
87926168 GTAACGCCCC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.28
Consensus pattern (44 bp):
GAAGATAGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATC
Done.