Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 270 of 356
Found at i:88600651 original size:24 final size:25
Alignment explanation
Indices: 88600624--88600674 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
88600614 ATGTGTGTAC
*
88600624 ATATTATGTAAATGTTTTA-ATATT
1 ATATTATATAAATGTTTTATATATT
**
88600648 ATATTATATGTATGTTTTATATATT
1 ATATTATATAAATGTTTTATATATT
88600673 AT
1 AT
88600675 GAACATGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (25 bp):
ATATTATATAAATGTTTTATATATT
Found at i:88600697 original size:25 final size:25
Alignment explanation
Indices: 88600635--88600699 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
88600625 TATTATGTAA
* *
88600635 ATGTTTTAATATTA-TATTATATGT
1 ATGTTTTAATATTATTATAACATGT
88600659 ATGTTTT-ATA-TATTATGAACATGT
1 ATGTTTTAATATTATTAT-AACATGT
88600683 AT-TTTTAATATTATTAT
1 ATGTTTTAATATTATTAT
88600700 TAAATTTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
22 2 0.06
23 10 0.29
24 17 0.49
25 6 0.17
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.57
Consensus pattern (25 bp):
ATGTTTTAATATTATTATAACATGT
Found at i:88607224 original size:12 final size:12
Alignment explanation
Indices: 88607207--88607233 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
88607197 GTGTTCTTTA
88607207 TTTTATTTTATT
1 TTTTATTTTATT
88607219 TTTTATTTTATT
1 TTTTATTTTATT
88607231 TTT
1 TTT
88607234 CAAAACTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:88610038 original size:21 final size:21
Alignment explanation
Indices: 88610014--88610078 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
88610004 AAGTCTAGCT
*
88610014 GAAGCACATAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
*
88610035 GAAGC-C-CGAAG-GCT-AACT
1 GAAGCACAC-AAGTGCTAAACG
88610053 GAAGCACACAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
88610074 GAAGC
1 GAAGC
88610079 CCGAAAGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 8 0.22
19 7 0.19
20 8 0.22
21 13 0.36
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACG
Found at i:88610055 original size:39 final size:39
Alignment explanation
Indices: 88609996--88610096 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
88609986 ATCGTGATTT
* * *
88609996 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
88610035 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
88610074 GAAGCCCGAAAGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
88610097 TCATCAGAGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.38, C:0.25, G:0.26, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:88612394 original size:2 final size:2
Alignment explanation
Indices: 88612387--88612413 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
88612377 AAATTTGGTT
88612387 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
88612414 TACATGGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:88615742 original size:20 final size:21
Alignment explanation
Indices: 88615719--88615760 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
88615709 GAATATGCTG
* *
88615719 GAAATTGAAAGTTTA-TGATA
1 GAAAATGAAAGGTTATTGATA
88615739 GAAAATGAAAGGTTATTGATA
1 GAAAATGAAAGGTTATTGATA
88615760 G
1 G
88615761 TTAAACAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.31
Consensus pattern (21 bp):
GAAAATGAAAGGTTATTGATA
Found at i:88619609 original size:5 final size:5
Alignment explanation
Indices: 88619571--88619605 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
88619561 TGTTACCGTC
*
88619571 AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA GGAGA
1 AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA
88619606 GGAGCAGAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (5 bp):
AGAGA
Found at i:88620070 original size:35 final size:35
Alignment explanation
Indices: 88620031--88620101 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
88620021 TTTATTTTTT
*
88620031 AAGTTTGAGAGCTTTTTACATATTTAAAAAAAATC
1 AAGTTTGAGAGCTTTTTACACATTTAAAAAAAATC
*
88620066 AAGTTTGAGAGCTTTTTACGCATTTAAAAAAAATC
1 AAGTTTGAGAGCTTTTTACACATTTAAAAAAAATC
88620101 A
1 A
88620102 TACCTTACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (35 bp):
AAGTTTGAGAGCTTTTTACACATTTAAAAAAAATC
Found at i:88621527 original size:18 final size:19
Alignment explanation
Indices: 88621504--88621548 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
88621494 ATCAGCCAAA
*
88621504 AAAAAAAGCA-GTAGAGTT
1 AAAAAAAGCAGGTAAAGTT
*
88621522 AAAAAAAGGAGGTAAAGTT
1 AAAAAAAGCAGGTAAAGTT
88621541 AGAAAAAA
1 A-AAAAAA
88621549 AAAAGAAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 9 0.39
19 8 0.35
20 6 0.26
ACGTcount: A:0.62, C:0.02, G:0.22, T:0.13
Consensus pattern (19 bp):
AAAAAAAGCAGGTAAAGTT
Found at i:88621547 original size:42 final size:40
Alignment explanation
Indices: 88621457--88621553 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 40
88621447 AAAAAAAAGA
* *
88621457 AGAAGAAAAAAAGCTGTAAAGTTAAAAAAAAGGAAAAATC
1 AGAAAAAAAAAAGCAGTAAAGTTAAAAAAAAGGAAAAATC
* * * *
88621497 AGCCAAAAAAAAAAGCAGTAGAGTTAAAAAAAGGAGGTAAAGTT
1 AG--AAAAAAAAAAGCAGTAAAGTTAAAAAAA--AGGAAAAATC
88621541 AGAAAAAAAAAAG
1 AGAAAAAAAAAAG
88621554 AAATCAGCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
40 2 0.04
42 36 0.77
44 9 0.19
ACGTcount: A:0.64, C:0.05, G:0.20, T:0.11
Consensus pattern (40 bp):
AGAAAAAAAAAAGCAGTAAAGTTAAAAAAAAGGAAAAATC
Found at i:88622253 original size:18 final size:19
Alignment explanation
Indices: 88622216--88622254 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
88622206 ATGGGTTGAT
* *
88622216 TTTTTTATATTTTAATATA
1 TTTTTTATATTCTAAAATA
88622235 TTTTTTAT-TTCTAAAATA
1 TTTTTTATATTCTAAAATA
88622253 TT
1 TT
88622255 ATTAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTTATATTCTAAAATA
Found at i:88628628 original size:21 final size:21
Alignment explanation
Indices: 88628602--88628648 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
88628592 TAGTATGGTA
88628602 GAAGAATCTGAAAATTCTTG-G
1 GAAGAATCTGAAAATTC-TGAG
88628623 GAAGAATCTGAAAATTCTGAG
1 GAAGAATCTGAAAATTCTGAG
88628644 GAAGA
1 GAAGA
88628649 TCTAAGCGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.43, C:0.09, G:0.26, T:0.23
Consensus pattern (21 bp):
GAAGAATCTGAAAATTCTGAG
Found at i:88629431 original size:22 final size:22
Alignment explanation
Indices: 88629394--88629443 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
88629384 TATTACAAAA
88629394 ATATAA-ATTAATAAAAATAAT
1 ATATAATATTAATAAAAATAAT
88629415 ATATAATATTACA-AAAAATAAT
1 ATATAATATTA-ATAAAAATAAT
88629437 ATATAAT
1 ATATAAT
88629444 CTACTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.22
22 20 0.74
23 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (22 bp):
ATATAATATTAATAAAAATAAT
Found at i:88629572 original size:12 final size:12
Alignment explanation
Indices: 88629542--88629576 Score: 61
Period size: 13 Copynumber: 2.8 Consensus size: 12
88629532 TCTATGTTAC
88629542 TTAAAGAATAAT
1 TTAAAGAATAAT
88629554 TTAAAAGAATAAT
1 TT-AAAGAATAAT
88629567 TTAAAGAATA
1 TTAAAGAATA
88629577 TATTGTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (12 bp):
TTAAAGAATAAT
Found at i:88630348 original size:5 final size:5
Alignment explanation
Indices: 88630340--88630365 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
88630330 GATACAAATC
88630340 AAAGA AAAGA AAAGA AAAGA AAAGA A
1 AAAGA AAAGA AAAGA AAAGA AAAGA A
88630366 CATATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:88636889 original size:14 final size:13
Alignment explanation
Indices: 88636866--88636905 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
88636856 TAAATACTTG
88636866 TTATTGTTCTTAA
1 TTATTGTTCTTAA
88636879 TTATGTGTTCTTAA
1 TTAT-TGTTCTTAA
*
88636893 TTCTTGTT-TTAA
1 TTATTGTTCTTAA
88636905 T
1 T
88636906 ATTTTCAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 5 0.20
13 8 0.32
14 12 0.48
ACGTcount: A:0.20, C:0.07, G:0.10, T:0.62
Consensus pattern (13 bp):
TTATTGTTCTTAA
Found at i:88638197 original size:19 final size:17
Alignment explanation
Indices: 88638173--88638238 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 17
88638163 AATATTTTGT
88638173 TTAAAATTGTTAAAAATCA
1 TTAAAATT-TTAAAAAT-A
88638192 TTAAAATTTTTAAAAAATTA
1 TTAAAA-TTTT-AAAAA-TA
* *
88638212 TAGAAAATTATAAAAATA
1 T-TAAAATTTTAAAAATA
88638230 TTAAAATTT
1 TTAAAATTT
88638239 ATTAATTCAG
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
17 6 0.15
18 3 0.08
19 13 0.33
20 12 0.31
21 5 0.13
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (17 bp):
TTAAAATTTTAAAAATA
Found at i:88638241 original size:10 final size:10
Alignment explanation
Indices: 88638175--88638243 Score: 56
Period size: 10 Copynumber: 7.1 Consensus size: 10
88638165 TATTTTGTTT
*
88638175 AAAATTGTTA
1 AAAATTATTA
*
88638185 AAAATCATT-
1 AAAATTATTA
*
88638194 AAAATTTTTAA
1 AAAATTATT-A
88638205 AAAATTA-TA
1 AAAATTATTA
88638214 GAAAATTA-TA
1 -AAAATTATTA
88638224 AAAA-TATTA
1 AAAATTATTA
*
88638233 AAATTTATTA
1 AAAATTATTA
88638243 A
1 A
88638244 TTCAGTAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
8 2 0.04
9 17 0.35
10 23 0.48
11 6 0.12
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (10 bp):
AAAATTATTA
Found at i:88639534 original size:15 final size:15
Alignment explanation
Indices: 88639514--88639546 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
88639504 ACTTAAATTT
*
88639514 AATACTTACTTTTTC
1 AATACTTAATTTTTC
88639529 AATACTTAATTTTTC
1 AATACTTAATTTTTC
88639544 AAT
1 AAT
88639547 TTATCAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (15 bp):
AATACTTAATTTTTC
Found at i:88641319 original size:24 final size:26
Alignment explanation
Indices: 88641287--88641336 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
88641277 TTTTTCTTAT
*
88641287 TTTATTAAAT-AAA-AAATTTAAAAA
1 TTTAATAAATCAAATAAATTTAAAAA
*
88641311 TTTAATAAATCAAATATATTTAAAAA
1 TTTAATAAATCAAATAAATTTAAAAA
88641337 CATAAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 9 0.41
25 3 0.14
26 10 0.45
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
TTTAATAAATCAAATAAATTTAAAAA
Found at i:88646976 original size:21 final size:21
Alignment explanation
Indices: 88646944--88646984 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
88646934 AGGCTCGAGG
88646944 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
88646965 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
88646985 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:88651382 original size:35 final size:36
Alignment explanation
Indices: 88651303--88651382 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 36
88651293 AAGTTTATTC
* *
88651303 CAACCTTTTTAAGGTTGTCTTAGATAAGTCTACTCT
1 CAACCTTTTTAAGGTTGTCTTAGACAAGCCTACTCT
* **
88651339 GATA--TTTTTAAGGTTGTCTTAGACGGGCCTA-TCT
1 CA-ACCTTTTTAAGGTTGTCTTAGACAAGCCTACTCT
88651373 CAACCTTTTT
1 CAACCTTTTT
88651383 TAAAGATTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
33 1 0.03
34 4 0.11
35 28 0.80
36 1 0.03
37 1 0.03
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (36 bp):
CAACCTTTTTAAGGTTGTCTTAGACAAGCCTACTCT
Found at i:88651560 original size:40 final size:40
Alignment explanation
Indices: 88651500--88651578 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
88651490 TAAATAAAGT
*
88651500 TAATTTCACATTTCACTATTATCTCTTTTGTATTTCTATC
1 TAATTTCACATTTCAATATTATCTCTTTTGTATTTCTATC
*
88651540 TAATTTCACATTTCAATATTATGTCTTTTGTATTTCTAT
1 TAATTTCACATTTCAATATTATCTCTTTTGTATTTCTAT
88651579 ATTTTATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.24, C:0.16, G:0.04, T:0.56
Consensus pattern (40 bp):
TAATTTCACATTTCAATATTATCTCTTTTGTATTTCTATC
Found at i:88662361 original size:18 final size:19
Alignment explanation
Indices: 88662324--88662363 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
88662314 ATTTAGAATC
88662324 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
88662343 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
88662361 AAA
1 AAA
88662364 CTATCAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.23
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:88666861 original size:14 final size:14
Alignment explanation
Indices: 88666842--88666884 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
88666832 TCAAAGGGAT
88666842 GGAGATTTAGAGAA
1 GGAGATTTAGAGAA
*
88666856 GGAGATTTAGAGAT
1 GGAGATTTAGAGAA
88666870 GGAGATTTAGAGAA
1 GGAGATTTAGAGAA
88666884 G
1 G
88666885 CAAGAAATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (14 bp):
GGAGATTTAGAGAA
Found at i:88666937 original size:19 final size:19
Alignment explanation
Indices: 88666913--88666952 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
88666903 AGATGCTGAG
88666913 GATTACGG-ATCAGTATGGC
1 GATTACGGAAT-AGTATGGC
88666932 GATTACGGAATAGTATGGC
1 GATTACGGAATAGTATGGC
88666951 GA
1 GA
88666953 CACGAAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.25
Consensus pattern (19 bp):
GATTACGGAATAGTATGGC
Found at i:88666988 original size:14 final size:14
Alignment explanation
Indices: 88666969--88666998 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
88666959 AATGGTGGAA
*
88666969 GGATTTTGATTTGG
1 GGATTTCGATTTGG
88666983 GGATTTCGATTTGG
1 GGATTTCGATTTGG
88666997 GG
1 GG
88666999 GAAAAATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.40, T:0.43
Consensus pattern (14 bp):
GGATTTCGATTTGG
Found at i:88667045 original size:14 final size:14
Alignment explanation
Indices: 88667026--88667061 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
88667016 TTGGGGATAC
88667026 AGATTTTAGGGGGG
1 AGATTTTAGGGGGG
88667040 AGATTTTA-GGGGG
1 AGATTTTAGGGGGG
*
88667053 AAATTTTAG
1 AGATTTTAG
88667062 AGGTTCTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.28, C:0.00, G:0.39, T:0.33
Consensus pattern (14 bp):
AGATTTTAGGGGGG
Found at i:88668055 original size:21 final size:23
Alignment explanation
Indices: 88668010--88668059 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 23
88668000 GATTTAGGCC
88668010 TAAACCCCTAACCCTTTGAACCA
1 TAAACCCCTAACCCTTTGAACCA
*
88668033 TAAACCCC-AACCC-TTGAATCA
1 TAAACCCCTAACCCTTTGAACCA
88668054 TAAACC
1 TAAACC
88668060 ATAAACCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 13 0.50
22 5 0.19
23 8 0.31
ACGTcount: A:0.38, C:0.38, G:0.04, T:0.20
Consensus pattern (23 bp):
TAAACCCCTAACCCTTTGAACCA
Found at i:88668064 original size:7 final size:7
Alignment explanation
Indices: 88668052--88668170 Score: 62
Period size: 7 Copynumber: 16.7 Consensus size: 7
88668042 ACCCTTGAAT
88668052 CATAAAC
1 CATAAAC
88668059 CATAAAC
1 CATAAAC
88668066 CATAAAC
1 CATAAAC
*
88668073 CATAATC
1 CATAAAC
* *
88668080 CCTAAATG
1 CATAAA-C
*
88668088 CATAATC
1 CATAAAC
88668095 CATAAAC
1 CATAAAC
*
88668102 CTTAAA-
1 CATAAAC
88668108 -ATAGTAAC
1 CATA--AAC
*
88668116 TCTTAAAC
1 -CATAAAC
*
88668124 CTTAAAC
1 CATAAAC
* *
88668131 CTTAAGC
1 CATAAAC
*
88668138 CATATAC
1 CATAAAC
* *
88668145 CCTAAAT
1 CATAAAC
88668152 CATAAAC
1 CATAAAC
*
88668159 CCTAAAC
1 CATAAAC
*
88668166 TATAA
1 CATAA
88668171 TGATAATTAA
Statistics
Matches: 83, Mismatches: 23, Indels: 12
0.70 0.19 0.10
Matches are distributed among these distances:
5 2 0.02
7 72 0.87
8 7 0.08
10 2 0.02
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:88668364 original size:41 final size:41
Alignment explanation
Indices: 88668319--88668591 Score: 291
Period size: 41 Copynumber: 6.7 Consensus size: 41
88668309 TTAATATAAA
* **
88668319 TAATGCTCTGGTTGTTAGCGGCGTTTTACAAAAAGCGCCAT
1 TAATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAGCGCCGC
* *
88668360 TAATGCTCTGGTTTTTAGCGGCGTTTTGCCAAAAGCGCCGC
1 TAATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAGCGCCGC
* * * *
88668401 TAATGCTCTAGTTTTTAGCGGCGTTTCACCAGAAGCGCCGC
1 TAATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAGCGCCGC
* *
88668442 TAATGCTCTGGTTTTTAGCGGCGTTTTACCAGAAGCGCCGC
1 TAATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAGCGCCGC
** * *
88668483 TAATGCTCTAACTTTTTAGTGGCGTTTTTAGAAAAA-CGCCGC
1 TAATGCTCT-GGTTTTTAGCGGCG-TTTTACAAAAAGCGCCGC
* * **
88668525 TATTTCTCT-GTTTTTAGCGGCGTTTTAACAAAAAATGCCGC
1 TAATGCTCTGGTTTTTAGCGGCGTTTT-ACAAAAAGCGCCGC
* * **
88668566 TATTGCTC-CGTTTTTAATGGCGTTTT
1 TAATGCTCTGGTTTTTAGCGGCGTTTT
88668592 TGTTAAAACG
Statistics
Matches: 201, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.02
40 17 0.08
41 148 0.74
42 24 0.12
43 8 0.04
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (41 bp):
TAATGCTCTGGTTTTTAGCGGCGTTTTACAAAAAGCGCCGC
Found at i:88676696 original size:25 final size:27
Alignment explanation
Indices: 88676641--88676695 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 27
88676631 TTTTAGTCCT
88676641 TTTTAAAATTTTTATATAATTTATTTA
1 TTTTAAAATTTTTATATAATTTATTTA
*
88676668 TTTTAAATATTTTATATATTATTTATTT
1 TTTTAAA-ATTTT-TATATAATTTATTT
88676696 TTACTACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 7 0.28
28 5 0.20
29 13 0.52
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTAAAATTTTTATATAATTTATTTA
Found at i:88676790 original size:20 final size:21
Alignment explanation
Indices: 88676767--88676815 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
88676757 ATTTATATGC
88676767 TTTATTATATATTATATT-AT
1 TTTATTATATATTATATTCAT
* *
88676787 TTTAATATATATTTTATTCAT
1 TTTATTATATATTATATTCAT
*
88676808 TATATTAT
1 TTTATTAT
88676816 TTTTTATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTATTATATATTATATTCAT
Found at i:88676803 original size:29 final size:30
Alignment explanation
Indices: 88676771--88676849 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 30
88676761 ATATGCTTTA
88676771 TTATATATTATATTATTTTA-ATATA-TATT
1 TTAT-TATTATATTATTTTATATATATTATT
88676800 TTATTCATTATATTATTTTTTATTATATATTATT
1 TTATT-ATTATATTA--TTTTA-TATATATTATT
88676834 TTATTTATT-TATTATT
1 TTA-TTATTATATTATT
88676850 ATGTACAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
28 1 0.02
29 13 0.30
31 7 0.16
33 10 0.23
34 10 0.23
35 2 0.05
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (30 bp):
TTATTATTATATTATTTTATATATATTATT
Found at i:88676860 original size:26 final size:26
Alignment explanation
Indices: 88676807--88676865 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
88676797 ATTTTATTCA
* **
88676807 TTATATTATTTTTTATTATATATTATT
1 TTAT-TTATTTATTATTATATACAATT
*
88676834 TTATTTATTTATTATTATGTACAATT
1 TTATTTATTTATTATTATATACAATT
88676860 TT-TTTA
1 TTATTTA
88676866 AAATTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.14
26 20 0.71
27 4 0.14
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (26 bp):
TTATTTATTTATTATTATATACAATT
Found at i:88680055 original size:17 final size:17
Alignment explanation
Indices: 88680024--88680122 Score: 51
Period size: 17 Copynumber: 6.4 Consensus size: 17
88680014 AATGTAAGGA
**
88680024 ATAATATATGGTAAAAT
1 ATAATATATAATAAAAT
88680041 ATAATATATAATAAAAT
1 ATAATATATAATAAAAT
88680058 -T--TATA-AATAAAAT
1 ATAATATATAATAAAAT
* *
88680071 GT-ATA-ATAAT--GAT
1 ATAATATATAATAAAAT
*
88680084 AT-A-A-ATAATATAAT
1 ATAATATATAATAAAAT
88680098 GATAATATATAAATAAAA-
1 -ATAATATAT-AATAAAAT
88680116 ATAATAT
1 ATAATAT
88680123 GTACTATTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 20
0.72 0.07 0.22
Matches are distributed among these distances:
12 6 0.09
13 12 0.18
14 8 0.12
15 7 0.11
16 2 0.03
17 23 0.35
18 2 0.03
19 6 0.09
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (17 bp):
ATAATATATAATAAAAT
Found at i:88680113 original size:11 final size:11
Alignment explanation
Indices: 88680041--88680113 Score: 58
Period size: 11 Copynumber: 6.4 Consensus size: 11
88680031 ATGGTAAAAT
88680041 ATAATATATAA
1 ATAATATATAA
* *
88680052 TAAAATTTATAA
1 -ATAATATATAA
* *
88680064 ATAAAATGTATA
1 ATAATATATA-A
88680076 ATAATGATATAA
1 ATAAT-ATATAA
*
88680088 ATAATATA-ATG
1 ATAATATATA-A
88680099 ATAATATATAA
1 ATAATATATAA
88680110 ATAA
1 ATAA
88680114 AAATAATATG
Statistics
Matches: 47, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
10 1 0.02
11 21 0.45
12 21 0.45
13 4 0.09
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (11 bp):
ATAATATATAA
Found at i:88685153 original size:20 final size:20
Alignment explanation
Indices: 88685125--88685162 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
88685115 TCTGCGAAAC
*
88685125 AGGTCTACACGGCCGTGTAA
1 AGGTCTACACGCCCGTGTAA
*
88685145 AGGTTTACACGCCCGTGT
1 AGGTCTACACGCCCGTGT
88685163 GACTGAGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (20 bp):
AGGTCTACACGCCCGTGTAA
Found at i:88686562 original size:41 final size:38
Alignment explanation
Indices: 88686458--88686562 Score: 106
Period size: 42 Copynumber: 2.7 Consensus size: 38
88686448 TTTGAGTACT
*
88686458 AAATATTTAGTTTGAGTACAAAA-AA-TATTGACTACCA
1 AAATATTAAGTTTGAGTA-AAAATAATTATTGACTACCA
* ***
88686495 AAATATTAGGCAAGAGTAAAACATAATTATGTTGACTACCAA
1 AAATATTAAGTTTGAGTAAAA-ATAATTA--TTGACTACC-A
88686537 AAATATTAAGTTTGAGTAAAAATAAT
1 AAATATTAAGTTTGAGTAAAAATAAT
88686563 AATATCTCAA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
36 3 0.06
37 14 0.26
38 2 0.04
39 2 0.04
41 14 0.26
42 18 0.34
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (38 bp):
AAATATTAAGTTTGAGTAAAAATAATTATTGACTACCA
Found at i:88689754 original size:22 final size:22
Alignment explanation
Indices: 88689721--88689762 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
88689711 TGGTCCTTCC
88689721 TTTTTTTATATTTTTAATTTCA
1 TTTTTTTATATTTTTAATTTCA
88689743 TTTTATTT-TATTTTTAATTT
1 TTTT-TTTATATTTTTAATTT
88689763 AACCCTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTTTTTATATTTTTAATTTCA
Found at i:88690035 original size:21 final size:23
Alignment explanation
Indices: 88689991--88690100 Score: 68
Period size: 23 Copynumber: 4.8 Consensus size: 23
88689981 ATATTTTAAA
*
88689991 TATTATATATTCTTTATATTAATT
1 TATTATATATTATTTATA-TAATT
88690015 TATT-TATATTATTTATA-AATTT
1 TATTATATATTATTTATATAA-TT
* * * * *
88690037 TAGTATATGTTATTTTTATTATA
1 TATTATATATTATTTATATAATT
* * *
88690060 TGTTATTTGTTCCATTTATAT--TT
1 TATTATATATT--ATTTATATAATT
88690083 TATTATATATT-TTTATAT
1 TATTATATATTATTTATAT
88690101 TATATATATT
Statistics
Matches: 67, Mismatches: 14, Indels: 14
0.71 0.15 0.15
Matches are distributed among these distances:
20 7 0.10
21 2 0.03
22 5 0.07
23 41 0.61
24 5 0.07
25 7 0.10
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.64
Consensus pattern (23 bp):
TATTATATATTATTTATATAATT
Found at i:88690080 original size:20 final size:16
Alignment explanation
Indices: 88690034--88690067 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
88690024 TATTTATAAA
*
88690034 TTTTAGTATATGTTAT
1 TTTTATTATATGTTAT
88690050 TTTTATTATATGTTAT
1 TTTTATTATATGTTAT
88690066 TT
1 TT
88690068 GTTCCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (16 bp):
TTTTATTATATGTTAT
Found at i:88690125 original size:46 final size:49
Alignment explanation
Indices: 88690075--88690205 Score: 119
Period size: 46 Copynumber: 2.7 Consensus size: 49
88690065 TTTGTTCCAT
88690075 TTATATTTTATTATATATTTTTATATTATATAT-A-T-TAATTATTTTA
1 TTATATTTTATTATATATTTTTATATTATATATAATTCTAATTATTTTA
* * ** * *
88690121 TTATATTTTTTTATGTAAATTTACT-TAATATATAATTCTTATTATTTTA
1 TTATATTTTATTATATATTTTTA-TATTATATATAATTCTAATTATTTTA
*
88690170 -TATTTCATTTATTATATATTTTATATCATTATATAT
1 TTATAT--TTTATTATATATTTT-TAT-ATTATATAT
88690206 GTATTTTGGT
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
46 26 0.41
47 2 0.03
48 5 0.08
49 10 0.16
50 12 0.19
51 2 0.03
52 7 0.11
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.63
Consensus pattern (49 bp):
TTATATTTTATTATATATTTTTATATTATATATAATTCTAATTATTTTA
Found at i:88690210 original size:21 final size:22
Alignment explanation
Indices: 88690159--88690212 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
88690149 TATATAATTC
88690159 TTAT-TATTTTATATTTCATTTA
1 TTATATATTTTATA-TTCATTTA
88690181 TTATATATTTTATA-TCA-TTA
1 TTATATATTTTATATTCATTTA
*
88690201 TATATGTATTTT
1 T-TATATATTTT
88690213 GGTTTACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.14
21 12 0.41
22 4 0.14
23 9 0.31
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (22 bp):
TTATATATTTTATATTCATTTA
Found at i:88690236 original size:18 final size:19
Alignment explanation
Indices: 88690215--88690254 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
88690205 TGTATTTTGG
*
88690215 TTTACAAA-TTTATTATAT
1 TTTACAAATTTTATCATAT
*
88690233 TTTATAAATTTTATCATAT
1 TTTACAAATTTTATCATAT
88690252 TTT
1 TTT
88690255 CTAACATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTACAAATTTTATCATAT
Found at i:88690643 original size:17 final size:16
Alignment explanation
Indices: 88690621--88690670 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 16
88690611 ATGGAAATAT
88690621 AATCTTGAAGGATATAC
1 AATCTTGAA-GATATAC
*
88690638 AATCTTAGATATGATATGC
1 AATCTT-GA-A-GATATAC
88690657 AATCTTGAAGATAT
1 AATCTTGAAGATAT
88690671 GATCTTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 5 0.17
17 7 0.24
18 4 0.14
19 13 0.45
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (16 bp):
AATCTTGAAGATATAC
Found at i:88690690 original size:22 final size:21
Alignment explanation
Indices: 88690631--88690673 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
88690621 AATCTTGAAG
*
88690631 GATATACAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
88690650 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
88690671 GAT
1 GAT
88690674 CTTGTAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
21 9 0.43
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:88691219 original size:18 final size:17
Alignment explanation
Indices: 88691196--88691229 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
88691186 TTTCCCTGAT
*
88691196 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
88691214 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
88691230 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:88700423 original size:1 final size:1
Alignment explanation
Indices: 88700417--88700478 Score: 52
Period size: 1 Copynumber: 62.0 Consensus size: 1
88700407 CTTCTATTTC
* * * * * * * *
88700417 AAAAAAAAAAAGAAAAAGAAAAGAAAAAAAAAAGAAAAAAGAGAAAAAAGAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
88700479 TGGAGAGGCC
Statistics
Matches: 45, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (1 bp):
A
Found at i:88700432 original size:7 final size:7
Alignment explanation
Indices: 88700417--88700478 Score: 65
Period size: 7 Copynumber: 8.6 Consensus size: 7
88700407 CTTCTATTTC
88700417 AAAAA-A
1 AAAAAGA
88700423 AAAAAG-
1 AAAAAGA
88700429 AAAAAGAA
1 AAAAAG-A
*
88700437 AAGAAAAA
1 AA-AAAGA
88700445 AAAAAGAA
1 AAAAAG-A
88700453 AAAAGAGA
1 AAAA-AGA
88700461 AAAAAGA
1 AAAAAGA
88700468 AAAAAGA
1 AAAAAGA
88700475 AAAA
1 AAAA
88700479 TGGAGAGGCC
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
6 11 0.23
7 17 0.35
8 15 0.31
9 5 0.10
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:88700443 original size:16 final size:15
Alignment explanation
Indices: 88700420--88700478 Score: 75
Period size: 16 Copynumber: 3.9 Consensus size: 15
88700410 CTATTTCAAA
88700420 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
*
88700435 AAAAGAAAAAAAAAAG
1 AAAA-AAAAGAAAAAG
*
88700451 AAAAAAGAGAAAAA-
1 AAAAAAAAGAAAAAG
*
88700465 AGAAAAAAGAAAAA
1 AAAAAAAAGAAAAA
88700479 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
14 12 0.32
15 12 0.32
16 14 0.37
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:88700443 original size:23 final size:22
Alignment explanation
Indices: 88700417--88700478 Score: 88
Period size: 23 Copynumber: 2.8 Consensus size: 22
88700407 CTTCTATTTC
88700417 AAAAAAAAAAAGAAAAAGAAAA
1 AAAAAAAAAAAGAAAAAGAAAA
* *
88700439 GAAAAAAAAAAGAAAAAAGAGAA
1 AAAAAAAAAAAG-AAAAAGAAAA
*
88700462 AAAAGAAAAAAGAAAAA
1 AAAAAAAAAAAGAAAAA
88700479 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 16 0.46
23 19 0.54
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAGAAAAAGAAAA
Found at i:88700447 original size:9 final size:9
Alignment explanation
Indices: 88700420--88700472 Score: 63
Period size: 9 Copynumber: 5.7 Consensus size: 9
88700410 CTATTTCAAA
88700420 AAAAAAAAG
1 AAAAAAAAG
88700429 AAAAAGAAAAG
1 -AAAA-AAAAG
88700440 AAAAAAAA-
1 AAAAAAAAG
88700448 AAGAAAAAAG
1 AA-AAAAAAG
*
88700458 AGAAAAAAG
1 AAAAAAAAG
88700467 AAAAAA
1 AAAAAA
88700473 GAAAAATGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 2 0.05
9 22 0.58
10 9 0.24
11 5 0.13
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:88701761 original size:88 final size:87
Alignment explanation
Indices: 88701540--88701973 Score: 237
Period size: 87 Copynumber: 5.0 Consensus size: 87
88701530 CTAAAATTAC
* *
88701540 AGATCTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTAT
1 AGATCTGGCATCTCCAT-TTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT-T
* *
88701605 -AC-T-GAAGCAAATCCAAGAT--
64 CACATCAAAGCAGATCCAAGATAA
* *** * * * * * *
88701624 -GATTTGGCATTCTTGTGTTTAC-AAGGAGCA-AATCGAAGACATAGCAGATCTGACTTTTAGAT
1 AGATCTGGCA-TC-TCCATTT-CGACGGAG-AGCA--G-ATACATAGCAGATCTAACCTTCAGAT
*
88701686 GTTTTCACATCAAAGCAGATCTAAGATAA
59 GTTTTCACATCAAAGCAGATCCAAGATAA
*
88701715 CAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTAT
1 -AGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTT-T
*
88701780 -AC-T-GAAGCAGATCCAAGAT--
64 CACATCAAAGCAGATCCAAGATAA
* * * * * * * *
88701799 -GATTTGGCAT-TCTTATGTTTAC-AAGGA-A-CAAATCGAAGACATAGCAGATTTGACTTTCGG
1 AGATCTGGCATCTC-CA--TTT-CGACGGAGAGC--A--G-ATACATAGCAGATCTAACCTTCAG
* *
88701859 ATGTTCTCACACCAAAGCAGATCCAAGATAA
57 ATGTTTTCACATCAAAGCAGATCCAAGATAA
* *
88701890 TAGATCTGGCATCTCCATTTCGACGGAGAGTAGATTA-ATAGCAGATCTAACCTTTAGATGATTT
1 -AGATCTGGCATCTCCATTTCGACGGAGAGCAGA-TACATAGCAGATCTAACCTTCAGATG-TTT
*
88701954 T-AC-T-GAAGCAGATCCAAGAT
63 TCACATCAAAGCAGATCCAAGAT
88701974 GATTTGGCAT
Statistics
Matches: 259, Mismatches: 52, Indels: 76
0.67 0.13 0.20
Matches are distributed among these distances:
81 2 0.01
82 11 0.04
83 8 0.03
84 18 0.07
85 5 0.02
86 33 0.13
87 54 0.21
88 49 0.19
89 35 0.14
90 3 0.01
91 18 0.07
92 3 0.01
93 18 0.07
94 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (87 bp):
AGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGTTTTCA
CATCAAAGCAGATCCAAGATAA
Found at i:88701833 original size:175 final size:175
Alignment explanation
Indices: 88701538--88702060 Score: 786
Period size: 175 Copynumber: 3.0 Consensus size: 175
88701528 GGCTAAAATT
* * *
88701538 ACAGATCTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTT
1 ACAGATCTGGCATCTCCAT-TTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTT
*
88701603 ATACTGAAGCAAATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAG
65 ATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAG
* *
88701668 CAGATCTGACTTTTAGATGTTTTCACATCAAAGCAGATCTAAGATA
130 CAGATTTGACTTTCAGATGTTTTCACATCAAAGCAGATCTAAGATA
88701714 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
1 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
* *
88701779 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAGGAACAAATCGAAGACATAGC
66 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* * * *
88701844 AGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATA
131 AGATTTGACTTTCAGATGTTTTCACATCAAAGCAGATCTAAGATA
* * *
88701889 ATAGATCTGGCATCTCCATTTCGACGGAGAGTAGATTA-ATAGCAGATCTAACCTTTAGATGATT
1 ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGA-TACATAGCAGATCTAACCTTCAGAT-ATT
* * *
88701953 T-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCATAAGGAGCAAATCGAAGACATA
64 TATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATA
* * *
88702017 GCAGATTTGGCTTTCATG-TGTTTGCAC-T-GAAGCAGATCTAAGAT
129 GCAGATTTGACTTTCA-GATGTTTTCACATCAAAGCAGATCTAAGAT
88702061 GATTTGGCAT
Statistics
Matches: 317, Mismatches: 27, Indels: 9
0.90 0.08 0.03
Matches are distributed among these distances:
173 14 0.04
175 278 0.88
176 25 0.08
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
ACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATATTTA
TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
AGATTTGACTTTCAGATGTTTTCACATCAAAGCAGATCTAAGATA
Found at i:88702526 original size:19 final size:19
Alignment explanation
Indices: 88702475--88702553 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
88702465 AATCTTTAAG
88702475 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
88702494 GATA--CAACCTTAGATAT
1 GATATGCAATCTTAGATAT
88702511 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
88702530 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
88702551 GAT
1 GAT
88702554 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:88703099 original size:17 final size:17
Alignment explanation
Indices: 88703075--88703109 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
88703065 TGTTTCCCTG
*
88703075 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
88703093 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
88703110 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:88704103 original size:23 final size:24
Alignment explanation
Indices: 88704071--88704120 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
88704061 TTCATTTTTG
*
88704071 ATTTGTATGT-TCATAATTTTATTT
1 ATTTGTATGTATC-TAATTATATTT
*
88704095 ATTT-TATGTATCTCATTATATTT
1 ATTTGTATGTATCTAATTATATTT
88704118 ATT
1 ATT
88704121 CAATATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (24 bp):
ATTTGTATGTATCTAATTATATTT
Found at i:88715921 original size:43 final size:44
Alignment explanation
Indices: 88715860--88715942 Score: 141
Period size: 43 Copynumber: 1.9 Consensus size: 44
88715850 GATCCAAGAT
*
88715860 GATTTGGCATCTCTGTATT-GTCAGAGAGCAAATCGAAGAAACA
1 GATTTGGCATCTCTGTATTCGACAGAGAGCAAATCGAAGAAACA
*
88715903 GATTTGGCATCTCTGTATTCGACAGAGAGCAGATCGAAGA
1 GATTTGGCATCTCTGTATTCGACAGAGAGCAAATCGAAGA
88715943 CATAGCAGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
43 19 0.51
44 18 0.49
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTCGACAGAGAGCAAATCGAAGAAACA
Found at i:88716138 original size:44 final size:44
Alignment explanation
Indices: 88716080--88716305 Score: 214
Period size: 44 Copynumber: 5.2 Consensus size: 44
88716070 GATCTAAGAT
88716080 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * * *
88716124 AATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGATATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAG--ATAGCA
* * * *
88716170 GATTTGGCTTTCACGTGT-TTACGT-TGA-AGCAGATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT--GTCAGAGAGCAGATCGAAGATAGCA
* *
88716211 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAAATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* ** * *
88716255 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATAAAAAATAACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
88716299 GATTTGG
1 GATTTGG
88716306 TATTCCTAAG
Statistics
Matches: 148, Mismatches: 21, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
38 2 0.01
39 5 0.03
40 17 0.11
41 8 0.05
44 80 0.54
45 2 0.01
46 13 0.09
47 14 0.09
48 5 0.03
49 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Found at i:88716180 original size:131 final size:131
Alignment explanation
Indices: 88716028--88716284 Score: 451
Period size: 131 Copynumber: 2.0 Consensus size: 131
88716018 GAGCAGATCA
88716028 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTC
1 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTC
* *
88716093 TGTATTGTCAGAGAGCAGATCGAAGATAGCAAATTTGGCATCTCTGTATTGTCAGAGAGCAAATT
66 TGTATTGTCAGAGAGCAGATCGAAAATAGCAAATTTGGCATCTCTGTATTGGCAGAGAGCAAATT
88716158 G
131 G
* *
88716159 AAGATATAGCAGATTTGGCTTTCACGTGTTTACGTTGAAGCAGATCTAAGATGATTTGGCGTCTC
1 AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTC
* * *
88716224 TGTATTGTCAGAGAGCAGATCGAAAATAGTAGATTTGGCGTCTCTGTATTGGCAGAGAGCA
66 TGTATTGTCAGAGAGCAGATCGAAAATAGCAAATTTGGCATCTCTGTATTGGCAGAGAGCA
88716285 GATAAAAAAT
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 119 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (131 bp):
AAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCGTCTC
TGTATTGTCAGAGAGCAGATCGAAAATAGCAAATTTGGCATCTCTGTATTGGCAGAGAGCAAATT
G
Found at i:88717813 original size:23 final size:22
Alignment explanation
Indices: 88717775--88717875 Score: 82
Period size: 23 Copynumber: 4.5 Consensus size: 22
88717765 ATATTTTAAA
*
88717775 TATTATATATTCTTTATATTATTT
1 TATT-TATATTATTTATA-TATTT
*
88717799 TATTTATATTATTTATAAATTT
1 TATTTATATTATTTATATATTT
* *
88717821 TAGTATATGTTA-TTATATATTTT
1 TA-TTTATATTATTTATATA-TTT
*
88717844 TATATTATATATATTAAT-TATTT
1 TAT-TTATAT-TATTTATATATTT
88717867 TA-TTATATT
1 TATTTATATT
88717876 TTTGTATGTA
Statistics
Matches: 64, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
20 1 0.02
21 6 0.09
22 13 0.20
23 33 0.52
24 8 0.12
25 3 0.05
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (22 bp):
TATTTATATTATTTATATATTT
Found at i:88717846 original size:10 final size:10
Alignment explanation
Indices: 88717777--88717848 Score: 56
Period size: 11 Copynumber: 6.6 Consensus size: 10
88717767 ATTTTAAATA
88717777 TTATATATTCT
1 TTATATATT-T
88717788 TTATATTATTT
1 TTATA-TATTT
*
88717799 TATTTATATTAT
1 T-TATATATT-T
*
88717811 TTATA-AATT
1 TTATATATTT
88717820 TTAGTATATGTT
1 TTA-TATAT-TT
88717832 ATTATATATTT
1 -TTATATATTT
88717843 TTATAT
1 TTATAT
88717849 TATATATATT
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
9 4 0.08
10 10 0.20
11 17 0.34
12 16 0.32
13 3 0.06
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (10 bp):
TTATATATTT
Found at i:88717867 original size:46 final size:45
Alignment explanation
Indices: 88717788--88717874 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 45
88717778 TATATATTCT
*
88717788 TTATATTATTTTATTTATATTATTTATAAATTTTAGTATATGTTA
1 TTATATTATTTTATTTATATTATTAATAAATTTTAGTATATGTTA
* *
88717833 TTATA-TATTTTTATATTATATATATTAAT-TATTTTATTATAT
1 TTATATTA-TTTTAT-TTATAT-TATTAATAAATTTTAGTATAT
88717875 TTTTGTATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
44 2 0.06
45 11 0.31
46 17 0.47
47 6 0.17
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (45 bp):
TTATATTATTTTATTTATATTATTAATAAATTTTAGTATATGTTA
Found at i:88717925 original size:21 final size:23
Alignment explanation
Indices: 88717896--88717943 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
88717886 AATTTACTTA
*
88717896 ATATATCA-TTCTTAT-TATTTT
1 ATATATCATTTATTATATATTTT
*
88717917 ATATTTCATTTATTATATATTTT
1 ATATATCATTTATTATATATTTT
88717940 ATAT
1 ATAT
88717944 CATTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 7 0.30
22 6 0.26
23 10 0.43
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATATCATTTATTATATATTTT
Found at i:88717935 original size:16 final size:17
Alignment explanation
Indices: 88717908--88717953 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
88717898 ATATCATTCT
*
88717908 TATTATTTTATATTTCA
1 TATTATTATATATTTCA
*
88717925 T-TTATTATATATTTTA
1 TATTATTATATATTTCA
*
88717941 TATCATTATATAT
1 TATTATTATATAT
88717954 GTATTTTGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTATTATATATTTCA
Found at i:88717946 original size:21 final size:19
Alignment explanation
Indices: 88717897--88717960 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 19
88717887 ATTTACTTAA
*
88717897 TATATCATTCTTATTATTT
1 TATATCATTATTATTATTT
88717916 TATATTTCATTTATTATATATTT
1 TATA--TCA-TTATTAT-TATTT
88717939 TATATCATTATATATGTATTT
1 TATATCATTAT-TAT-TATTT
88717960 T
1 T
88717961 GGTATACAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
19 4 0.11
20 4 0.11
21 15 0.39
22 6 0.16
23 9 0.24
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (19 bp):
TATATCATTATTATTATTT
Found at i:88718528 original size:23 final size:24
Alignment explanation
Indices: 88718496--88718545 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
88718486 TTCATTTTTG
*
88718496 ATTTGTATGT-TCATAATTTTATTT
1 ATTTGTATGTATC-TAATTATATTT
*
88718520 ATTT-TATGTATCTCATTATATTT
1 ATTTGTATGTATCTAATTATATTT
88718543 ATT
1 ATT
88718546 CAATATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (24 bp):
ATTTGTATGTATCTAATTATATTT
Found at i:88723714 original size:21 final size:21
Alignment explanation
Indices: 88723688--88723755 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
88723678 GTAGATGGTA
88723688 GAAGAATCTGAAAATTCTTGG
1 GAAGAATCTGAAAATTCTTGG
* * **
88723709 GAAGAATTTGAAATTTCTAAG
1 GAAGAATCTGAAAATTCTTGG
88723730 GAAGAATCTGAAAATTC-TGAG
1 GAAGAATCTGAAAATTCTTG-G
88723751 GAAGA
1 GAAGA
88723756 TCTAAGCAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (21 bp):
GAAGAATCTGAAAATTCTTGG
Found at i:88727196 original size:5 final size:5
Alignment explanation
Indices: 88727188--88727260 Score: 53
Period size: 5 Copynumber: 14.2 Consensus size: 5
88727178 TTCTTTTTGT
* *
88727188 TTATA TTATTTA TTATA TTATTT TTAATA TTATA TT-TA -TAAA TTATA
1 TTATA TTA--TA TTATA TTA-TA TT-ATA TTATA TTATA TTATA TTATA
*
88727235 TTATA TTATA TTCTTA TTATA -TATA T
1 TTATA TTATA TT-ATA TTATA TTATA T
88727261 CATTCATTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
3 1 0.02
4 7 0.13
5 30 0.56
6 10 0.19
7 6 0.11
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:88727205 original size:12 final size:11
Alignment explanation
Indices: 88727187--88727227 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
88727177 TTTCTTTTTG
88727187 TTTATATTATT
1 TTTATATTATT
88727198 TATTATATTATT
1 T-TTATATTATT
*
88727210 TTTAATATTATA
1 TTT-ATATTATT
88727222 TTTATA
1 TTTATA
88727228 AATTATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 6 0.22
12 21 0.78
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTATATTATT
Found at i:88727860 original size:24 final size:25
Alignment explanation
Indices: 88727808--88727871 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
88727798 TAAATACCTT
88727808 ATTTTTATTTGATTTATATTTATAC
1 ATTTTTATTTGATTTATATTTATAC
*
88727833 ATTTTAATTTG-TTTATTTATTT-TA-
1 ATTTTTATTTGATTTA--TATTTATAC
*
88727857 ATTTTTATTTTATTT
1 ATTTTTATTTGATTT
88727872 TGATATTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 13 0.39
25 15 0.45
26 5 0.15
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (25 bp):
ATTTTTATTTGATTTATATTTATAC
Found at i:88739344 original size:44 final size:44
Alignment explanation
Indices: 88739279--88739880 Score: 358
Period size: 44 Copynumber: 14.0 Consensus size: 44
88739269 GAATCTAAGA
*
88739279 AGATTTGGCATTTCTGTATTGTCAGAAAGCAGATCGAAGATAAC
1 AGATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAAC
* * *
88739323 ATATTTGGTATCTCTGTATTGTCAGAGAA-CAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGTCAGA-AAGCAGATCGAAGATAAC
* * *
88739367 AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCCAAGAT---
1 AGATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAAC
* * * * *
88739408 -GATTTGGCATCT-TCGTATT-TGACGAGGAGCAAATCCAAGA-AGC
1 AGATTTGGCATCTCT-GTATTGTCA-GA-AAGCAGATCGAAGATAAC
* ** *
88739451 AGATTTGGCAT-TC-ATATATGTTCAGCGAGCAGATCCAAG----C
1 AGATTTGGCATCTCTGTAT-TG-TCAGAAAGCAGATCGAAGATAAC
* * * * *
88739491 TGATTTGGCATCT-TCGTATTCGAC-GAGGAGCAAATCCAAGA-AGA-
1 AGATTTGGCATCTCT-GTATT-GTCAGA-AAGCAGATCGAAGATA-AC
* ** *
88739535 AGATTTGGCAT-TCCTGTATGGTCAGGGAGCAGATCAAAGAT---
1 AGATTTGGCATCT-CTGTATTGTCAGAAAGCAGATCGAAGATAAC
* * * * *
88739576 -GATTTGGCATCT-TCGTATTCGAC-GAGGAGCAAATCCAAGA-AGC
1 AGATTTGGCATCTCT-GTATT-GTCAGA-AAGCAGATCGAAGATAAC
** * *
88739619 AGATTTGGGGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAAC
* ** * *
88739663 AAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAAC
** * * * **
88739707 AGATTTGGTGTCTCTGTATTGACAGAGAA-CATATTGAAGATGGC
1 AGATTTGGCATCTCTGTATTGTCAGA-AAGCAGATCGAAGATAAC
** * *
88739751 AGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGAC
1 AGATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAAC
* * * *
88739795 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGGTAGC
1 AGATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAAC
* * * *
88739839 AGATTTGGCATCTCTGTGTTGTCAGAGAGTAGATCAAAGATA
1 AGATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATA
88739881 GTGTATTTGG
Statistics
Matches: 460, Mismatches: 59, Indels: 78
0.77 0.10 0.13
Matches are distributed among these distances:
39 4 0.01
40 45 0.10
41 43 0.09
42 7 0.02
43 45 0.10
44 309 0.67
45 7 0.02
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCTCTGTATTGTCAGAAAGCAGATCGAAGATAAC
Found at i:88739447 original size:41 final size:41
Alignment explanation
Indices: 88739393--88739615 Score: 183
Period size: 41 Copynumber: 5.3 Consensus size: 41
88739383 TATTGTCAGA
* *
88739393 GAGCAGATCCAAGATGATTTGGCATCTTCGTATTTGACGAG
1 GAGCAAATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
* * *
88739434 GAGCAAATCCAAGAAGCAGATTTGGCA--TTCATATAT-GTTC-AG
1 GAGCAAATCCAAG-A--TGATTTGGCATCTTCGTAT-TCG-ACGAG
* *
88739476 CGAGCAGATCCAAGCTGATTTGGCATCTTCGTATTCGACGAG
1 -GAGCAAATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
* *
88739518 GAGCAAATCCAAGAAGAAGATTTGGCAT-TCCTGTATGGTC-A-G-G
1 GAGCAAATCC---AAGATGATTTGGCATCTTC-GTAT--TCGACGAG
* *
88739561 GAGCAGATCAAAGATGATTTGGCATCTTCGTATTCGACGAG
1 GAGCAAATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
88739602 GAGCAAATCCAAGA
1 GAGCAAATCCAAGA
88739616 AGCAGATTTG
Statistics
Matches: 143, Mismatches: 19, Indels: 40
0.71 0.09 0.20
Matches are distributed among these distances:
38 2 0.01
39 1 0.01
40 28 0.20
41 38 0.27
42 19 0.13
43 25 0.17
44 27 0.19
45 1 0.01
46 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (41 bp):
GAGCAAATCCAAGATGATTTGGCATCTTCGTATTCGACGAG
Found at i:88739481 original size:84 final size:84
Alignment explanation
Indices: 88739359--88739659 Score: 408
Period size: 84 Copynumber: 3.6 Consensus size: 84
88739349 GAACAGATCG
* * *
88739359 AAGATAGCAGATTTGGCGTCTC-TGTATTGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCG
1 AAGA-AGCAGATTTGGCAT-TCATATATGGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCG
*
88739423 TATTTGACGAGGAGCAAATCC
64 TATTCGACGAGGAGCAAATCC
* * *
88739444 AAGAAGCAGATTTGGCATTCATATATGTTCAGCGAGCAGATCCAAGCTGATTTGGCATCTTCGTA
1 AAGAAGCAGATTTGGCATTCATATATGGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCGTA
88739509 TTCGACGAGGAGCAAATCC
66 TTCGACGAGGAGCAAATCC
* * * * *
88739528 AAGAAGAAGATTTGGCATTCCTGTATGGTCAGGGAGCAGATCAAAGATGATTTGGCATCTTCGTA
1 AAGAAGCAGATTTGGCATTCATATATGGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCGTA
88739593 TTCGACGAGGAGCAAATCC
66 TTCGACGAGGAGCAAATCC
** * * *
88739612 AAGAAGCAGATTTGGGGTCTC-TGTATTGTCAGAGAGCAGATCGAAGAT
1 AAGAAGCAGATTTGGCAT-TCATATATGGTCAGAGAGCAGATCCAAGAT
88739660 AGCAAATTTG
Statistics
Matches: 194, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
83 2 0.01
84 186 0.96
85 6 0.03
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (84 bp):
AAGAAGCAGATTTGGCATTCATATATGGTCAGAGAGCAGATCCAAGATGATTTGGCATCTTCGTA
TTCGACGAGGAGCAAATCC
Found at i:88739487 original size:43 final size:41
Alignment explanation
Indices: 88739432--88739626 Score: 120
Period size: 40 Copynumber: 4.7 Consensus size: 41
88739422 GTATTTGACG
88739432 AGGAGCAAATCCAAGAAGCAGATTTGGCATTCATATATGTTC
1 AGGAGCAAATCCAAGAAGCAGATTTGGCATTCATATATG-TC
* * * *
88739474 AGCGAGCAGATCC---AAGCTGATTTGGCATCTTCGTAT-TCGAC
1 AG-GAGCAAATCCAAGAAGCAGATTTGGCA--TTCATATAT-GTC
* * *
88739515 GAGGAGCAAATCCAAGAAGAAGATTTGGCATTCCTGTATGGTC
1 -AGGAGCAAATCCAAGAAGCAGATTTGGCATTCATATAT-GTC
* * *
88739558 AGGGAGCAGAT-C-A-AAG-ATGATTTGGCATCTTCGTAT-TCGAC
1 A-GGAGCAAATCCAAGAAGCA-GATTTGGCA--TTCATATAT-GTC
88739599 GAGGAGCAAATCCAAGAAGCAGATTTGG
1 -AGGAGCAAATCCAAGAAGCAGATTTGG
88739627 GGTCTCTGTA
Statistics
Matches: 118, Mismatches: 17, Indels: 34
0.70 0.10 0.20
Matches are distributed among these distances:
39 1 0.01
40 25 0.21
41 23 0.19
42 25 0.21
43 21 0.18
44 22 0.19
45 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (41 bp):
AGGAGCAAATCCAAGAAGCAGATTTGGCATTCATATATGTC
Found at i:88739770 original size:132 final size:132
Alignment explanation
Indices: 88739281--88739866 Score: 457
Period size: 132 Copynumber: 4.5 Consensus size: 132
88739271 ATCTAAGAAG
* * * * * * *
88739281 ATTTGGCATTTCTGTATTGTCAGAAAGCAGATCGAAGATAACATATTTGGTATCTCTGTATTGTC
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGAC
* * * * *
88739346 AGAGAACAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCCAAGATG--
66 AGAGAACATATTGAAGATGGCAGATTTGGGGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGAC
88739409 --
131 AA
* * * *
88739409 ATTTGGCATCT-TCGTATT-TGACGAGGAGCAAATCCAAGA-AGCAGATTTGGCAT-TC-ATATA
1 ATTTGGCATCTCT-GTATTGTCA-GA-GAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAT-
* * * * ** * ** * * *
88739469 TGTTCAGCGAGCAGA-TCCA-A--GCTGATTTGGCATCT-TCGTATTCGAC-GAGGAGCAAATCC
62 TG-ACAGAGAACATATTGAAGATGGCAGATTTGGGGTCTCT-GTATT-GTCAGA-GAGCAGATCG
* *
88739528 AAGAAGA-AG
123 AAGATGACAA
* *
88739537 ATTTGGCAT-TCCTGTATGGTCAGGGAGCAGATCAAAGAT----GATTTGGCATCT-TCGTATTC
1 ATTTGGCATCT-CTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCT-GTATT-
* * ** *
88739596 GAC-GAGGAGCAAATCCAAGA-AGCAGATTTGGGGTCTCTGTATTGTCAGAGAGCAGATCGAAGA
63 GACAGA-GAACATATTGAAGATGGCAGATTTGGGGTCTCTGTATTGTCAGAGAGCAGATCGAAGA
88739659 T-AGCAA
127 TGA-CAA
** * **
88739665 ATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGTGTCTCTGTATTGAC
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGAC
*
88739730 AGAGAACATATTGAAGATGGCAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGAC
66 AGAGAACATATTGAAGATGGCAGATTTGGGGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGAC
*
88739795 AG
131 AA
* * *
88739797 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGGTAGCAGATTTGGCATCTCTGTGTTGTC
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGAC
88739862 AGAGA
66 AGAGA
88739867 GTAGATCAAA
Statistics
Matches: 362, Mismatches: 60, Indels: 68
0.74 0.12 0.14
Matches are distributed among these distances:
123 1 0.00
124 31 0.09
125 25 0.07
126 11 0.03
127 36 0.10
128 104 0.29
129 16 0.04
131 13 0.04
132 123 0.34
133 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (132 bp):
ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGAC
AGAGAACATATTGAAGATGGCAGATTTGGGGTCTCTGTATTGTCAGAGAGCAGATCGAAGATGAC
AA
Found at i:88739891 original size:44 final size:44
Alignment explanation
Indices: 88739602--88739881 Score: 366
Period size: 44 Copynumber: 6.4 Consensus size: 44
88739592 ATTCGACGAG
* * *
88739602 GAGCAAATCCAAGA-AGCAGATTTGGGGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
88739645 GAGCAGATCGAAGATAGCAAATTTGGTGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
88739689 GAGCAGATCGAAGATAGCAGATTTGGTGTCTCTGTATTGACAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * * * *
88739733 GAACATATTGAAGATGGCAGATTTGGTGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
*
88739777 GAGCAGATCGAAGAT-GACAGATTTGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTGTCAGA
* * * *
88739821 GAGCAGATCAAAGGTAGCAGATTTGGCATCTCTGTGTTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
88739865 GAGTAGATCAAAGATAG
1 GAGCAGATCGAAGATAG
88739882 TGTATTTGGC
Statistics
Matches: 213, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
43 13 0.06
44 199 0.93
45 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
Found at i:88741494 original size:29 final size:27
Alignment explanation
Indices: 88741448--88741502 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
88741438 ATTAATCCTA
88741448 ATTTTTTTAAATTAAATTAACTTTTAAT
1 ATTTTTTTAAATTAAATTAA-TTTTAAT
* * *
88741476 ATTTTTTATATATTTAATTTATTTTAA
1 ATTTTTT-TAAATTAAATTAATTTTAA
88741503 ATACCTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTTTTTAAATTAAATTAATTTTAAT
Found at i:88741576 original size:5 final size:5
Alignment explanation
Indices: 88741568--88741640 Score: 53
Period size: 5 Copynumber: 14.2 Consensus size: 5
88741558 TTCTTTTTGT
* *
88741568 TTATA TTATTTA TTATA TTATTT TTAATA TTATA TT-TA -TAAA TTATA
1 TTATA TTA--TA TTATA TTA-TA TT-ATA TTATA TTATA TTATA TTATA
*
88741615 TTATA TTATA TTCTTA TTATA -TATA T
1 TTATA TTATA TT-ATA TTATA TTATA T
88741641 CATTCATTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
3 1 0.02
4 7 0.13
5 30 0.56
6 10 0.19
7 6 0.11
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:88741585 original size:12 final size:11
Alignment explanation
Indices: 88741567--88741607 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
88741557 TTTCTTTTTG
88741567 TTTATATTATT
1 TTTATATTATT
88741578 TATTATATTATT
1 T-TTATATTATT
*
88741590 TTTAATATTATA
1 TTT-ATATTATT
88741602 TTTATA
1 TTTATA
88741608 AATTATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 6 0.22
12 21 0.78
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTATATTATT
Found at i:88742261 original size:17 final size:16
Alignment explanation
Indices: 88742230--88742264 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
88742220 TTTTAATTTG
88742230 TTTATTTATTTTTATT
1 TTTATTTATTTTTATT
*
88742246 TTTATTTTTCTTTTATT
1 TTTATTTAT-TTTTATT
88742263 TT
1 TT
88742265 GATATTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTATTTATTTTTATT
Found at i:88755367 original size:59 final size:59
Alignment explanation
Indices: 88755275--88755390 Score: 187
Period size: 59 Copynumber: 2.0 Consensus size: 59
88755265 TATCTAGGGC
* * *
88755275 ATCTAACTTTTGTCATGTTTGCTATCTTTAGATTCTTTTTCTTCTCAAAGATAGGCTAT
1 ATCTAACTTTTATCATGTTTGCTATCTGTAGATTCTATTTCTTCTCAAAGATAGGCTAT
* *
88755334 ATCTAACTTTTATCCTGTTTGCTATCTGTAGATTCTATTTCTTCTTAAAGATAGGCT
1 ATCTAACTTTTATCATGTTTGCTATCTGTAGATTCTATTTCTTCTCAAAGATAGGCT
88755391 TTCAGATTAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.48
Consensus pattern (59 bp):
ATCTAACTTTTATCATGTTTGCTATCTGTAGATTCTATTTCTTCTCAAAGATAGGCTAT
Found at i:88756268 original size:88 final size:88
Alignment explanation
Indices: 88756088--88756845 Score: 500
Period size: 88 Copynumber: 8.6 Consensus size: 88
88756078 CAAGATAGCA
* * * *
88756088 GATTTGGTGTCTCTGTGTTTGACGAAGAGCAGATCGAAGACATAGCTGA-TTGGCTTTCACGTGT
1 GATTTGGCGTCTCTATGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
88756152 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* *
88756175 GATTTGGCATCTCTATGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCGTCTCTATGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
88756240 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * * *
88756263 GATTTGGCATCTTCGTA--TTTGAC-GAGGAGCAAATCCAAG--ATAGCAGATTTGGCGTCTCTA
1 GATTTGGCGTC-TC-TATGTTTGACGGA-GAGCAAATCGAAGACATAGCTGATTTGGC-TTTC-A
* * *
88756323 --TGTTCGACG--GAGAGCAGATCAAAGACATAGCT
61 CGTGTT-TACGTTGA-AGCAAATCTAAG----A--T
* * *
88756355 GATTTGGC-TTTC-ACGTGTTT-ACGTTGA-AGCAAATCTAAG----A--TGATTTGGCATCTC-
1 GATTTGGCGTCTCTA--TGTTTGACG--GAGAGCAAATCGAAGACATAGCTGATTTGGC-TTTCA
* * * *
88756409 TGTGTTT--GATGGAGAGCAGATCGAAGACATAGCT
61 CGTGTTTACG-TTGA-AGCAAATCTAAG----A--T
* *
88756443 GATTTGGC-TTTC-ACGTGTTT-ACGTTGA-AGCAAATCTAAG----A--TGATTTGGCATCTT-
1 GATTTGGCGTCTCTA--TGTTTGACG--GAGAGCAAATCGAAGACATAGCTGATTTGGC-T-TTC
* * * ** *
88756497 -CTTATTCGACGAAG-AGCAAATCCAAGAT
60 ACGTGTT-TACGTTGAAGCAAATCTAAGAT
* * * *
88756525 AGCAGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCAC
1 ----GATTTGGCGTCTCTATGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCAC
88756590 GTGTTTACGTTGAAGCAAATCTAAGAT
62 GTGTTTACGTTGAAGCAAATCTAAGAT
* * *
88756617 GATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCGTCTCTATGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
88756682 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* *
88756705 GATTTGGCGTCTCTGTGTTCGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCGTCTCTATGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
*
88756770 TTACGTTGAAGCAAATCTATGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * *
88756793 GATTTGGCATCTTCGTA--TTTGAC-GAGGAGCAAATCCAAG--ATAGCAGATTTGGC
1 GATTTGGCGTC-TC-TATGTTTGACGGA-GAGCAAATCGAAGACATAGCTGATTTGGC
88756846 GTCTCTGTGT
Statistics
Matches: 576, Mismatches: 45, Indels: 101
0.80 0.06 0.14
Matches are distributed among these distances:
82 1 0.00
84 1 0.00
85 5 0.01
86 62 0.11
87 61 0.11
88 370 0.64
89 5 0.01
90 11 0.02
91 9 0.02
92 49 0.09
94 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (88 bp):
GATTTGGCGTCTCTATGTTTGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
TTACGTTGAAGCAAATCTAAGAT
Found at i:88756442 original size:221 final size:221
Alignment explanation
Indices: 88755991--88756937 Score: 1303
Period size: 221 Copynumber: 4.3 Consensus size: 221
88755981 GTAATAGGCT
* * * * * * * **
88755991 AAGACATAGCAGATCTGACCTTCAAGTGTTTACGTTGAAGCAGATCCAAGACAATTTGGCATCTT
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
* * * * * *
88756056 CATATTCGACAAGGAGCAAATCCAAGATAGCAGATTTGGTGTCTCTGTGTTTGACGAAGAGCAGA
66 CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
*
88756121 TCGAAGACATAGCTGA-TTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
131 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
*
88756185 CTCTATGTTTGACGGAGAGCAGATCG
196 CTCTGTGTTTGACGGAGAGCAGATCG
88756211 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
*
88756276 CGTATTTGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
66 CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
88756341 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
131 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
*
88756406 CTCTGTGTTTGATGGAGAGCAGATCG
196 CTCTGTGTTTGACGGAGAGCAGATCG
88756432 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
* * *
88756497 CTTATTCGACGAAGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGA
66 CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
*
88756562 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGT
131 TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
*
88756627 CTCTGTGTTCGACGGAGAGCAGATCG
196 CTCTGTGTTTGACGGAGAGCAGATCG
*
88756653 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTC-T
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
* * * * * **
88756717 CTGTGTTCGACG-GAGAGCAAATCGAAGACATAGCTGATTTGGC-TTTC-ACGTGTT-TACGTTG
66 C-GTATTCGACGAG-GAGCAAATCCAAG--ATAGCAGATTTGGCGTCTCTA--TGTTCGACGGAG
* * * * * *
88756778 A--AG--CAAA-TC-TATGATGATTTGGCATCTT--CGTATTTGACG-AGGAGCAAATCCAAGAT
125 AGCAGATCAAAGACATA-GCTGATTTGGC-T-TTCACGTGTTT-ACGTTGAAGCAAATCTAAGAT
* *
88756834 AGCAGATTTGGCGTCTCTGTGTTTGACAGAGAGCAGATCG
186 ----GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCG
88756874 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCT
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCT
88756938 CTGTGTTTGA
Statistics
Matches: 665, Mismatches: 46, Indels: 30
0.90 0.06 0.04
Matches are distributed among these distances:
216 2 0.00
217 31 0.05
218 8 0.01
219 2 0.00
220 133 0.20
221 464 0.70
222 8 0.01
223 17 0.03
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (221 bp):
AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTT
CGTATTCGACGAGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAGAGCAGA
TCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCAT
CTCTGTGTTTGACGGAGAGCAGATCG
Found at i:88756646 original size:309 final size:308
Alignment explanation
Indices: 88756088--88757059 Score: 1385
Period size: 309 Copynumber: 3.1 Consensus size: 308
88756078 CAAGATAGCA
** *
88756088 GATTTGGTGTCTCTGTGTTTGACGAAGAGCAGATCGAAGACATAGCTGA-TTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* * * *
88756152 TTACGTTGAAGCAAATCTAAGATGATTTGGCATC-TCTATGTTTGACGGAGAGCAGATCGAAGAC
66 TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCT-TATTTGACGAAGAGCAAATCCAAG--
* * * * * *
88756216 ATAGCTGATTTGGC-TTTCACGTGTTTACGTTGA-AGCAAATCTAAG----A--TGATTTGGCAT
128 ATAGCAGATTTGGCGTCTC-TGTGTTGACG--GAGAGCAGATCAAAGACATAGCTGATTTGGC-T
* * * * *
88756273 CTT--CGTATTTGACG-AGGAGCAAATCCAAGATAGCAGATTTGGCGTCTCTATGTTCGACGGAG
189 -TTCACGTGTTT-ACGTTGAAGCAAATCTAAGAT----GATTTGGCGTCTCTGTGTTCGACGGAG
*
88756335 AGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
248 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
*
88756396 GATTTGGCATCTCTGTGTTTGATGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
*
88756461 TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCTTATTCGACGAAGAGCAAATCCAAGATA
66 TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCTTATTTGACGAAGAGCAAATCCAAGATA
88756526 GCAGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACG
131 GCAGATTTGGCGTCTCTGTGTT-GACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACG
88756591 TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAG
195 TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAG
88756656 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
260 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
* * *
88756705 GATTTGGCGTCTCTGTGTTCGACGGAGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* * *
88756770 TTACGTTGAAGCAAATCTATGATGATTTGGCATCTTCGTATTTGACGAGGAGCAAATCCAAGATA
66 TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCTTATTTGACGAAGAGCAAATCCAAGATA
* *
88756835 GCAGATTTGGCGTCTCTGTGTTTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACG
131 GCAGATTTGGCGTCTCTGTG-TTGACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACG
* * *
88756900 TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTGTTTGACGGAGAGTAGATCGAAG
195 TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAG
88756965 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
260 ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
* * ** *
88757014 GATTTGGCATCTCTATATTAAACGGGGAGCAGATCGAAGACATAGC
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGC
88757060 AGATCTGACC
Statistics
Matches: 608, Mismatches: 41, Indels: 29
0.90 0.06 0.04
Matches are distributed among these distances:
306 2 0.00
307 28 0.05
308 51 0.08
309 486 0.80
310 5 0.01
311 3 0.00
312 4 0.01
313 29 0.05
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (308 bp):
GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
TTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTCTTATTTGACGAAGAGCAAATCCAAGATA
GCAGATTTGGCGTCTCTGTGTTGACGGAGAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGT
GTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAAGA
CATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
Found at i:88756948 original size:88 final size:88
Alignment explanation
Indices: 88756838--88757135 Score: 373
Period size: 88 Copynumber: 3.5 Consensus size: 88
88756828 CAAGATAGCA
* *
88756838 GATTTGGCGTCTCTGTGTTTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
88756903 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
*
88756926 GATTTGGCATCTCTGTGTTTGACGGAGAGTAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
88756991 TTACGTTGAAGCAAATCTAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * ** * * * *
88757014 GATTTGGCATCTCTATATTAAACGGGGAGCAGATCGAAGACATAGCAGA--T--C--TGAC---C
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* * *
88757070 TT-CATTGAAGCAGATCCAAGAT
66 TTACGTTGAAGCAAATCTAAGAT
* * *
88757092 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATA
1 GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATA
88757136 ACAGATCTGA
Statistics
Matches: 193, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
78 59 0.31
79 2 0.01
82 3 0.02
84 1 0.01
86 1 0.01
88 127 0.66
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (88 bp):
GATTTGGCATCTCTGTGTTTGACGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
TTACGTTGAAGCAAATCTAAGAT
Found at i:88757125 original size:78 final size:75
Alignment explanation
Indices: 88756996--88757210 Score: 268
Period size: 78 Copynumber: 2.8 Consensus size: 75
88756986 CGTGTTTACG
* * *
88756996 TTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTAAACGGGGAGCAGATCGAAGACATAGCA
1 TTGAAGCAAATCCAAGATGATTTGGCATCTCTGTATT-AACGGGGAGCAGATCGAAGACATAACA
88757061 GATCTGACCTT
65 GATCTGACCTT
*
88757072 CATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAA
1 --TTGAAGCAAATCCAAGATGATTTGGCATCTCTGTATTA-ACGGGGAGCAGATCGAAGACATAA
88757137 CAGATCTGACCTT
63 CAGATCTGACCTT
* * * * * *
88757150 TGTCAAGGAATATCCAAGATAATTTGGGCATTTATGTATTCAATGGGGAGCAGATCGAAGA
1 T-TGAAGCAA-ATCCAAGATGATTT-GGCATCTCTGTATT-AACGGGGAGCAGATCGAAGA
88757211 AATCAAGACT
Statistics
Matches: 121, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
76 1 0.01
77 6 0.05
78 83 0.69
79 30 0.25
80 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.26
Consensus pattern (75 bp):
TTGAAGCAAATCCAAGATGATTTGGCATCTCTGTATTAACGGGGAGCAGATCGAAGACATAACAG
ATCTGACCTT
Found at i:88763124 original size:17 final size:18
Alignment explanation
Indices: 88763102--88763136 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
88763092 GATAAGATAC
*
88763102 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
88763119 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
88763137 AGGGAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:88763692 original size:19 final size:19
Alignment explanation
Indices: 88763646--88763735 Score: 112
Period size: 19 Copynumber: 4.7 Consensus size: 19
88763636 TTAAATCTCC
88763646 AAGATTACAATATCATATCTT
1 AAGATTAC-ATATCATATC-T
88763667 CAAGATTACATATCATATCT
1 -AAGATTACATATCATATCT
*
88763687 AAGATTGCATATCATATCT
1 AAGATTACATATCATATCT
*
88763706 AAGATT--GTATCATATCT
1 AAGATTACATATCATATCT
*
88763723 AAGATTGCATATC
1 AAGATTACATATC
88763736 CTTAAAGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
17 16 0.25
19 28 0.44
20 1 0.02
21 10 0.16
22 8 0.13
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
AAGATTACATATCATATCT
Found at i:88763699 original size:14 final size:15
Alignment explanation
Indices: 88763679--88763735 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
88763669 AGATTACATA
88763679 TCATATCTAAGATTG
1 TCATATCTAAGATTG
88763694 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
88763713 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
88763730 -CATATC
1 TCATATC
88763736 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:88764381 original size:175 final size:175
Alignment explanation
Indices: 88764179--88764672 Score: 738
Period size: 175 Copynumber: 2.8 Consensus size: 175
88764169 GTAAACACGT
* * *
88764179 GAAAGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
88764244 ATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGTTATGTATCTACTCTCCGTCGAAATGGA
66 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGTTATGTATCTACTCTCCGTCGAAATGGA
* *
88764308 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
130 GATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCC
* *
88764354 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATTATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
88764419 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTGCTCTCCGTCAAAATGAAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTACTCTCCGTCGAAATGGAG
* *
88764484 ATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAATATCT
131 ATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCC
* * * * * * *
88764529 AAAAGTTAGATCTGCTATGTTTTCGATTTTCTCCTTGTAAACACAAGAATGTCAAATCATCTTAG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * * *
88764594 ATCTACTTTAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCATCGAATATGGA
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTACTCTCCGTCGAA-ATGGA
*
88764659 GACGCCAGATCTGT
130 GATGCCAGATCTGT
88764673 AATTTTAGCC
Statistics
Matches: 287, Mismatches: 30, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
175 267 0.93
176 20 0.07
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTACTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCC
Found at i:88764512 original size:86 final size:86
Alignment explanation
Indices: 88764237--88764512 Score: 255
Period size: 86 Copynumber: 3.2 Consensus size: 86
88764227 ATGCCAAATC
* *
88764237 ATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGTTATGTATCTACTCTCCGTCG
1 ATCTTGGATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGTTATGTATCTGCTCTCCGTCA
*
88764301 AAATGGAGATGCCAGATCTGTT
65 AAATGAAGATGCCAGATCTGTT
** * * * * * * *
88764323 ATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTG-T-T
1 ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAGGTTAGATCTGTTATG---T--ATCTGCTCT
* *
88764386 CCTTGT-AAACA-CAAGAATGCCA-A---ATT
59 CC--GTCAAA-ATGAAG-ATGCCAGATCTGTT
88764412 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTGCTCTCCGTCAA
1 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTGCTCTCCGTCAA
88764477 AATGAAGATGCCAGATCTGTT
66 AATGAAGATGCCAGATCTGTT
88764498 ATCTTGGATCTGCTT
1 ATCTTGGATCTGCTT
88764513 TGATGTGAAA
Statistics
Matches: 145, Mismatches: 25, Indels: 40
0.69 0.12 0.19
Matches are distributed among these distances:
82 13 0.09
83 8 0.06
84 4 0.03
86 34 0.23
87 21 0.14
88 21 0.14
89 22 0.15
91 4 0.03
92 6 0.04
93 12 0.08
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (86 bp):
ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTGCTCTCCGTCAA
AATGAAGATGCCAGATCTGTT
Found at i:88765744 original size:7 final size:7
Alignment explanation
Indices: 88765732--88765785 Score: 67
Period size: 7 Copynumber: 7.7 Consensus size: 7
88765722 GGCCTCTCCA
88765732 TTTTTCT
1 TTTTTCT
88765739 TTTTTCTT
1 TTTTTC-T
88765747 TTTTCTCT
1 TTTT-TCT
88765755 TTTTTCT
1 TTTTTCT
88765762 TTTTT-T
1 TTTTTCT
*
88765768 TTCTT-T
1 TTTTTCT
88765774 TTTTTCT
1 TTTTTCT
88765781 TTTTT
1 TTTTT
88765786 TTGAAATAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
6 10 0.24
7 20 0.48
8 10 0.24
9 2 0.05
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTCT
Found at i:88765757 original size:16 final size:16
Alignment explanation
Indices: 88765732--88765787 Score: 76
Period size: 16 Copynumber: 3.3 Consensus size: 16
88765722 GGCCTCTCCA
88765732 TTTTTCTTTTTTCTTT
1 TTTTTCTTTTTTCTTT
*
88765748 TTTCTCTTTTTTCTTTT
1 TTTTTCTTTTTTC-TTT
88765765 TTTTTCTTTTTTTTCTTT
1 TTTTTC--TTTTTTCTTT
88765783 TTTTT
1 TTTTT
88765788 GAAATAGAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 12 0.34
17 8 0.23
18 8 0.23
19 7 0.20
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTTCTTTTTTCTTT
Found at i:88765769 original size:19 final size:19
Alignment explanation
Indices: 88765745--88765787 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
88765735 TTCTTTTTTC
88765745 TTTTTTCTCTTTTTTCTTT
1 TTTTTTCTCTTTTTTCTTT
*
88765764 TTTTTTCTTTTTTTTCTTT
1 TTTTTTCTCTTTTTTCTTT
88765783 TTTTT
1 TTTTT
88765788 GAAATAGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (19 bp):
TTTTTTCTCTTTTTTCTTT
Found at i:88765786 original size:9 final size:9
Alignment explanation
Indices: 88765738--88765787 Score: 75
Period size: 9 Copynumber: 5.7 Consensus size: 9
88765728 TCCATTTTTC
88765738 TTTTTTCTT
1 TTTTTTCTT
*
88765747 TTTTCTCTT
1 TTTTTTCTT
*
88765756 TTTTCT-TT
1 TTTTTTCTT
88765764 TTTTTTCTT
1 TTTTTTCTT
88765773 TTTTTTCTT
1 TTTTTTCTT
88765782 TTTTTT
1 TTTTTT
88765788 GAAATAGAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
8 7 0.18
9 31 0.82
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:88771433 original size:17 final size:17
Alignment explanation
Indices: 88771411--88771443 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
88771401 GATATGATAC
88771411 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
88771428 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
88771444 AGAAATCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:88771444 original size:18 final size:17
Alignment explanation
Indices: 88771411--88771444 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
88771401 GATATGATAC
*
88771411 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
88771428 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
88771445 GAAATCAGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:88772005 original size:19 final size:19
Alignment explanation
Indices: 88771970--88772029 Score: 88
Period size: 17 Copynumber: 3.2 Consensus size: 19
88771960 AGATTAAAAG
88771970 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
88771991 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
88772008 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
88772027 ATC
1 ATC
88772030 CTTAAAGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.46
19 11 0.30
20 1 0.03
21 8 0.22
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:88774053 original size:31 final size:31
Alignment explanation
Indices: 88774018--88774100 Score: 114
Period size: 31 Copynumber: 2.7 Consensus size: 31
88774008 AATTTATATC
*
88774018 TTATTATATTAAATTATTTAAATATAATTTA
1 TTATTATATTAAATTATTTAAATATAACTTA
* *
88774049 TTATTATATTAAATTATTTAAATCTTACTTA
1 TTATTATATTAAATTATTTAAATATAACTTA
* *
88774080 TTATTGTATTTAATT-TTTAAA
1 TTATTATATTAAATTATTTAAA
88774101 GTATTTTATA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 6 0.13
31 41 0.87
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (31 bp):
TTATTATATTAAATTATTTAAATATAACTTA
Found at i:88776232 original size:49 final size:49
Alignment explanation
Indices: 88776160--88776256 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 49
88776150 CGTTTGAAGT
* * *
88776160 TAAAATCACACCAAGATGAACAACACTTAATAGTTGACCAATCCAACTC
1 TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACTC
* *
88776209 TAAAATCACACCGAGACGAACAACACCTAACAGTTTACCAATCCAACT
1 TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACT
88776257 TCAATATTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.44, C:0.29, G:0.08, T:0.19
Consensus pattern (49 bp):
TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACTC
Found at i:88783898 original size:26 final size:26
Alignment explanation
Indices: 88783864--88783918 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
88783854 ATAAGAGCCA
* *
88783864 TAATTAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACTTT
** *
88783890 TAATCAGGAAGCTCATGAAGAGCTTT
1 TAATCAGGAAGCTCACAAAGAACTTT
88783916 TAA
1 TAA
88783919 ATGAAAACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACTTT
Found at i:88785613 original size:30 final size:30
Alignment explanation
Indices: 88785572--88785637 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
88785562 CATTTTATAC
*
88785572 TTGACT-TATAACTGTTATTGTATGCAAAT
1 TTGACTATATAACTGTAATTGTATGCAAAT
88785601 TTGACTATATAACTGTAATTGTATGCAAAT
1 TTGACTATATAACTGTAATTGTATGCAAAT
88785631 TTGACTA
1 TTGACTA
88785638 ACGACAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 6 0.17
30 29 0.83
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (30 bp):
TTGACTATATAACTGTAATTGTATGCAAAT
Found at i:88787942 original size:39 final size:38
Alignment explanation
Indices: 88787899--88788015 Score: 102
Period size: 39 Copynumber: 3.2 Consensus size: 38
88787889 ACAGGTAAGA
88787899 CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATC
1 CACACGGGCGTGTCGAATATT-GGCCAGGCAGTGTGATC
** * * *
88787938 CACACGGGCAAGGCCAAT-TT-G---GGCA-TGTGAGCC
1 CACACGGGCGTGTCGAATATTGGCCAGGCAGTGTGA-TC
* *
88787971 CACACGGGCGTGTCGAATATTGTGCCAGACCGTGTGATC
1 CACACGGGCGTGTCGAATATTG-GCCAGGCAGTGTGATC
88788010 CACACG
1 CACACG
88788016 AGTAAGGCCA
Statistics
Matches: 58, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
32 5 0.09
33 19 0.33
34 2 0.03
36 2 0.03
38 2 0.03
39 23 0.40
40 5 0.09
ACGTcount: A:0.22, C:0.26, G:0.32, T:0.19
Consensus pattern (38 bp):
CACACGGGCGTGTCGAATATTGGCCAGGCAGTGTGATC
Found at i:88787985 original size:72 final size:71
Alignment explanation
Indices: 88787899--88788054 Score: 240
Period size: 72 Copynumber: 2.2 Consensus size: 71
88787889 ACAGGTAAGA
* * *
88787899 CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATCCACACGGGCAAGGCCAATTTGGGCAT
1 CACACGGGCGTGTCGAATATTGGGCCAGACAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
88787964 GTGAGCC
66 GTG-GCC
* * *
88787971 CACACGGGCGTGTCGAATATTGTGCCAGACCGTGTGATCCACACGAGTAAGGCCAATCTGGGCAT
1 CACACGGGCGTGTCGAATATTGGGCCAGACAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
*
88788036 GTGGGC
66 GTGGCC
88788042 CACACGGGCGTGT
1 CACACGGGCGTGT
88788055 GAGCCCATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
71 15 0.19
72 62 0.81
ACGTcount: A:0.22, C:0.26, G:0.34, T:0.19
Consensus pattern (71 bp):
CACACGGGCGTGTCGAATATTGGGCCAGACAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
GTGGCC
Found at i:88789831 original size:28 final size:28
Alignment explanation
Indices: 88789793--88789849 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
88789783 AAAGAAAAAT
88789793 AGAGCAATACCACTCATGAATCAACCAG
1 AGAGCAATACCACTCATGAATCAACCAG
*
88789821 AGAGCAATACCACTTATGAATCAACCAG
1 AGAGCAATACCACTCATGAATCAACCAG
88789849 A
1 A
88789850 CTTATAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.44, C:0.26, G:0.14, T:0.16
Consensus pattern (28 bp):
AGAGCAATACCACTCATGAATCAACCAG
Found at i:88792659 original size:64 final size:64
Alignment explanation
Indices: 88792538--88792662 Score: 153
Period size: 64 Copynumber: 2.0 Consensus size: 64
88792528 GAGAGCCATG
* * * ** *
88792538 TAACAGGACGCTCATAAAGAGCTGCGGTATGTCCATAACACATGCATGATAACTACCGATCATA
1 TAACAGGACGCTCACAAAGAGCTGCAGTATGTCCACAACACATGCAAAACAACTACCGATCATA
* * *
88792602 TAACAGGATGCTCACAAAGAGCTGCAGTATGTCTACAACATATGCAAAACCAA-TACCGATC
1 TAACAGGACGCTCACAAAGAGCTGCAGTATGTCCACAACACATGCAAAA-CAACTACCGATC
88792663 GGGATGCTCG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
64 49 0.96
65 2 0.04
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.21
Consensus pattern (64 bp):
TAACAGGACGCTCACAAAGAGCTGCAGTATGTCCACAACACATGCAAAACAACTACCGATCATA
Found at i:88793087 original size:37 final size:37
Alignment explanation
Indices: 88793036--88793107 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
88793026 GATCAAAGTA
* *
88793036 AGCTTGCTTTAGCTACTTTCTCTTAGCTAGGGTTTTT
1 AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTTTT
*
88793073 AGCTTGCTTGAGCTACTTTTTCTTAGCTAGAGTTT
1 AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTT
88793108 CAATGGAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.15, C:0.18, G:0.19, T:0.47
Consensus pattern (37 bp):
AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTTTT
Found at i:88796776 original size:56 final size:56
Alignment explanation
Indices: 88796709--88796835 Score: 157
Period size: 56 Copynumber: 2.3 Consensus size: 56
88796699 CGACAAAATG
* * *
88796709 TGGCACTTAGTGTGCGGGGCAATCAAATATGGTACTTAGTGTACGA-ATATTGAGAA
1 TGGCACTTAGTGTGCGAGACAATCAAA-ATGGCACTTAGTGTACGAGATATTGAGAA
* * * * *
88796765 TGGCACTTAGTGTGCGAGATATTGAGAATGGCACTTAGTGTGCGAGATATTGAGAA
1 TGGCACTTAGTGTGCGAGACAATCAAAATGGCACTTAGTGTACGAGATATTGAGAA
*
88796821 TGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
88796836 AAAATATCGA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 16 0.26
56 45 0.74
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAGACAATCAAAATGGCACTTAGTGTACGAGATATTGAGAA
Found at i:88796794 original size:28 final size:28
Alignment explanation
Indices: 88796737--88796835 Score: 164
Period size: 28 Copynumber: 3.6 Consensus size: 28
88796727 GCAATCAAAT
* *
88796737 ATGGTACTTAGTGTACGA-ATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
88796764 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
88796792 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
*
88796820 ATGACACTTAGTGTGC
1 ATGGCACTTAGTGTGC
88796836 AAAATATCGA
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 16 0.24
28 52 0.76
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAGATATTGAGA
Found at i:88798857 original size:28 final size:28
Alignment explanation
Indices: 88798825--88798922 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
88798815 GTGAACATAG
88798825 GCACTGTGTGTGCGAGTTTCGTAACCGA
1 GCACTGTGTGTGCGAGTTTCGTAACCGA
* ****
88798853 GCACTGTGTGTGCGAG-ATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTTC-GTAACCGA
* *
88798881 GGCACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTTCGTAACCGA
88798910 GCACTGTGTGTGC
1 GCACTGTGTGTGC
88798923 AAGATCGGTT
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
27 2 0.04
28 33 0.60
29 19 0.35
30 1 0.02
ACGTcount: A:0.16, C:0.20, G:0.35, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTTCGTAACCGA
Found at i:88798892 original size:57 final size:57
Alignment explanation
Indices: 88798823--88798952 Score: 206
Period size: 57 Copynumber: 2.2 Consensus size: 57
88798813 AAGTGAACAT
* * *
88798823 AGGCACTGTGTGTGCGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
88798880 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
*
88798937 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
88798953 AAATGAGATC
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 60 0.90
59 7 0.10
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
Found at i:88798895 original size:29 final size:29
Alignment explanation
Indices: 88798853--88798952 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 29
88798843 TCGTAACCGA
88798853 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * **** *
88798882 GCACTGTGTGTGCGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
88798910 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
88798939 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
88798953 AAATGAGATC
Statistics
Matches: 52, Mismatches: 16, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
28 20 0.38
29 25 0.48
31 7 0.13
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:88803935 original size:28 final size:27
Alignment explanation
Indices: 88803878--88803948 Score: 106
Period size: 28 Copynumber: 2.6 Consensus size: 27
88803868 GCAATCAAAT
* *
88803878 ATGGTACTTAGTGTACGAATATTGAGA
1 ATGGCACTTAGTGTGCGAATATTGAGA
88803905 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGA-ATATTGAGA
*
88803933 ATGACACTTAGTGTGC
1 ATGGCACTTAGTGTGC
88803949 AAAATATCGA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 16 0.40
28 24 0.60
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (27 bp):
ATGGCACTTAGTGTGCGAATATTGAGA
Found at i:88803955 original size:28 final size:28
Alignment explanation
Indices: 88803895--88803955 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
88803885 TTAGTGTACG
* *
88803895 AATATTGAGAATGGCACTTAGTGTGCGA
1 AATATTGAGAATGACACTTAGTGTGCAA
*
88803923 GATATTGAGAATGACACTTAGTGTGCAA
1 AATATTGAGAATGACACTTAGTGTGCAA
88803951 AATAT
1 AATAT
88803956 CGAATGATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
AATATTGAGAATGACACTTAGTGTGCAA
Found at i:88805234 original size:8 final size:8
Alignment explanation
Indices: 88805221--88805252 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
88805211 TGTTAAACAG
88805221 ATTGTTTT
1 ATTGTTTT
88805229 ATTGTTTT
1 ATTGTTTT
88805237 ATTGTTTT
1 ATTGTTTT
*
88805245 ATGGTTTT
1 ATTGTTTT
88805253 GGTGATTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.16, T:0.72
Consensus pattern (8 bp):
ATTGTTTT
Found at i:88807592 original size:16 final size:17
Alignment explanation
Indices: 88807573--88807604 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
88807563 TTATTAAATC
88807573 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
88807589 ATATATTTAATATTAA
1 ATATATTTAATATTAA
88807605 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:88807616 original size:54 final size:54
Alignment explanation
Indices: 88807548--88807728 Score: 148
Period size: 54 Copynumber: 3.1 Consensus size: 54
88807538 TTATTAGTTA
*
88807548 TAATTATTTTAAATTTTATTAAATCATATATTTAAATTAAAATATATTTAATAT
1 TAATTATTTAAAATTTTATTAAATCATATATTTAAATTAAAATATATTTAATAT
* * **
88807602 TAATTATTTAAAATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
1 TAATTATTTAAAATTTTA--TTA-A--ATCATATATT-TAAATT-A--AAA-T-ATAT-TTAATA
88807667 T
54 T
* * * * *
88807668 TAATTA-TTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTTAATAA
1 TAATTATTTAA-AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATAT
88807722 TAATTAT
1 TAATTAT
88807729 GTTATTTTAT
Statistics
Matches: 100, Mismatches: 13, Indels: 27
0.71 0.09 0.19
Matches are distributed among these distances:
54 27 0.27
55 4 0.04
56 4 0.04
57 2 0.02
59 11 0.11
60 8 0.08
61 10 0.10
63 4 0.04
64 4 0.04
65 8 0.08
66 18 0.18
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (54 bp):
TAATTATTTAAAATTTTATTAAATCATATATTTAAATTAAAATATATTTAATAT
Done.