Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 271 of 356
Found at i:88807668 original size:66 final size:63
Alignment explanation
Indices: 88807597--88807929 Score: 245
Period size: 61 Copynumber: 5.4 Consensus size: 63
88807587 AAATATATTT
88807597 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
88807661 AG
62 AG
* * * * * * *
88807663 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
88807723 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* * * * * * *
88807783 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
88807843 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
88807903 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
88807930 ATTATATATT
Statistics
Matches: 199, Mismatches: 43, Indels: 53
0.67 0.15 0.18
Matches are distributed among these distances:
57 2 0.01
58 10 0.05
59 60 0.30
60 28 0.14
61 61 0.31
62 10 0.05
63 3 0.02
64 3 0.02
65 4 0.02
66 18 0.09
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:88807683 original size:120 final size:120
Alignment explanation
Indices: 88807559--88807971 Score: 704
Period size: 120 Copynumber: 3.4 Consensus size: 120
88807549 AATTATTTTA
* * * *
88807559 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--ATTTTATATT
* *
88807622 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
88807679 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTT
88807744 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
88807799 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTT
88807864 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
88807919 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
88807972 TAAATATGAT
Statistics
Matches: 281, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
119 4 0.01
120 275 0.98
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTT
ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:88807711 original size:18 final size:17
Alignment explanation
Indices: 88807680--88807714 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
88807670 ATTATTAAGA
88807680 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
88807697 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
88807715 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:88807831 original size:18 final size:17
Alignment explanation
Indices: 88807800--88807834 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
88807790 ATTATTAAGA
88807800 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
88807817 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
88807835 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:88807948 original size:18 final size:17
Alignment explanation
Indices: 88807920--88807954 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
88807910 ATTATTAAGA
*
88807920 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
88807937 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
88807955 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:88807966 original size:54 final size:54
Alignment explanation
Indices: 88807663--88807968 Score: 170
Period size: 54 Copynumber: 5.2 Consensus size: 54
88807653 TTCATATAAG
* *
88807663 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
* * * *
88807717 AATAATAATTATGT--TATTTTATATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAATT-ATAT
**
88807780 AAG
53 -TT
* *
88807783 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
* * * *
88807837 AATAATAATTATGT--TATTTTATATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAATT-ATAT
**
88807900 AAG
53 -TT
* *
88807903 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
88807957 AATAATAATTAT
1 AATAATAATTAT
88807969 GTTTAAATAT
Statistics
Matches: 187, Mismatches: 33, Indels: 64
0.66 0.12 0.23
Matches are distributed among these distances:
53 8 0.04
54 37 0.20
55 10 0.05
56 24 0.13
57 2 0.01
58 6 0.03
59 12 0.06
61 12 0.06
62 6 0.03
63 2 0.01
64 24 0.13
65 10 0.05
66 26 0.14
67 8 0.04
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (54 bp):
AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
Found at i:88808068 original size:147 final size:149
Alignment explanation
Indices: 88807908--88808182 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
88807898 ATAAGAATAT
*
88807908 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
88807973 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
88808036 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
88808055 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
88808120 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
88808183 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:88808095 original size:18 final size:17
Alignment explanation
Indices: 88808067--88808101 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
88808057 ATTATTAAGA
*
88808067 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
88808084 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
88808102 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:88808312 original size:44 final size:45
Alignment explanation
Indices: 88808263--88808357 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
88808253 TTACACCTCT
* *
88808263 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
* ** *
88808307 ATTACATTCAACCAGACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
88808352 ATTACA
1 ATTACA
88808358 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 17 0.39
45 27 0.61
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:88808357 original size:16 final size:16
Alignment explanation
Indices: 88808338--88808389 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
88808328 GATTTGCTAT
* *
88808338 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
88808354 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
88808370 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
88808386 TACA
1 TACA
88808390 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:88817892 original size:231 final size:231
Alignment explanation
Indices: 88817616--88818089 Score: 630
Period size: 231 Copynumber: 2.1 Consensus size: 231
88817606 TGCTCATACA
* ** ***
88817616 GTTTTACATTAACTTCAAGATCTCTACAACGTTCTTTGAAAGCCTTCTCTTCCCTTTCAAACTCC
1 GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
* * * * * * *
88817681 ATATAACGCTTCACAAAACTCTTCTCTTTCAACTCAATTTGTTCTTCTTTCAACTCATACTCGCT
66 ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
* * * * * *
88817746 CAAGCACTTCTCCAAAT-ATTTCTCTTTCACCCCAACTTCCTCCAACTTATCTTTTACTGA-TTT
131 CAAGCAATTCTCCAAATCA-TTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTAC-CACTTC
88817809 CTCCATCAACTTAAACT-CTTCACATTGCCGCTCACATT
194 CTCCATCAACTTAAACTCCTT-ACATTGCCGCTCACATT
* * *
88817847 GTTTTACACTAACTTCAAGATCTCTGCGACGTTCTTCCAAAGCCTTTTCTTCCAACTCAAACTCC
1 GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
* * *
88817912 ATACACCGCTTCTCAAAACTCTTCTCTTTCAACCCAAATTGTTGTTCTCTCAACACATAATCACT
66 ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
* * *
88817977 CAAGCAATTCTCCAAATCATTCTCTTTTAACCTAATTTCCCCCAACTTATCATTTACCACTTCCT
131 CAAGCAATTCTCCAAATCATTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACCACTTCCT
*
88818042 CCATCAACTTAAACTCCTTACATTGCTGCTCACATT
196 CCATCAACTTAAACTCCTTACATTGCCGCTCACATT
*
88818078 GTTCTACACTAA
1 GTTTTACACTAA
88818090 ATTGGAGATC
Statistics
Matches: 210, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
230 1 0.00
231 205 0.98
232 4 0.02
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.36
Consensus pattern (231 bp):
GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
CAAGCAATTCTCCAAATCATTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACCACTTCCT
CCATCAACTTAAACTCCTTACATTGCCGCTCACATT
Found at i:88818137 original size:231 final size:231
Alignment explanation
Indices: 88817620--88818149 Score: 595
Period size: 231 Copynumber: 2.3 Consensus size: 231
88817610 CATACAGTTT
* * * * ** * *** *
88817620 TACATTAACTTCAAGATCTCTACAACGTTCTTTGAAAGCCTTCTCTTCCCTTTCAAACTCCATAT
1 TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
* * * * * *
88817685 AACGCTTCACAAAACTCTTCTCTTTCAACTCAATTTGTTCTTCTTTCAACTCATACTCGCTCAAG
66 AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
* * * * * *
88817750 CACTTCTCCAAATATTTCTCTTTCACCCCAACTTCCTCCAACTTATCTTTTACTGATTTCTCCAT
131 CAATTCTCCAAATATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCATTCCTCCAT
*
88817815 CAACTTAAACTCTTCACATTGCCGCTCACATTGTTT
196 CAACTTAAACTCTTCACATTGCCGCTCACATTGTTC
* * *
88817851 TACACTAACTTCAAGATCTCTGCGACGTTCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
1 TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
* * *
88817916 ACCGCTTCTCAAAACTCTTCTCTTTCAACCCAAATTGTTGTTCTCTCAACACATAATCACTCAAG
66 AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
* * *
88817981 CAATTCTCCAAATCA-TTCTCTTTTAACCTAATTTCCCCCAACTTATCATTTAC-CACTTCCTCC
131 CAATTCTCCAAAT-ATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCA-TTCCTCC
*
88818044 ATCAACTTAAACTCCTT-ACATTGCTGCTCACATTGTTC
194 ATCAACTTAAACT-CTTCACATTGCCGCTCACATTGTTC
** * * * * *
88818082 TACACTAAATTGGAGATCTTTACGAC-ATCGTT-CAAGATCCTTCTTC-TCTAACTCAAAATCCC
1 TACACTAAATTCAAGATCTCTACGACGATC-TTCCAA-AGCCTT-TTCTTCCAACTCAAACTCCA
88818144 TACAAC
63 TACAAC
88818150 ACTTGTCAAA
Statistics
Matches: 252, Mismatches: 41, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
230 6 0.02
231 239 0.95
232 7 0.03
ACGTcount: A:0.27, C:0.32, G:0.06, T:0.35
Consensus pattern (231 bp):
TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
CAATTCTCCAAATATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCATTCCTCCAT
CAACTTAAACTCTTCACATTGCCGCTCACATTGTTC
Found at i:88818727 original size:6 final size:6
Alignment explanation
Indices: 88818716--88818746 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
88818706 TTTAAGGGAA
88818716 ACGGAG ACGGAG ACGGAG ACGGAG ACGGAG A
1 ACGGAG ACGGAG ACGGAG ACGGAG ACGGAG A
88818747 TGAGAGAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.48, T:0.00
Consensus pattern (6 bp):
ACGGAG
Found at i:88820142 original size:24 final size:24
Alignment explanation
Indices: 88820115--88820173 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
88820105 TTCAACCTTT
88820115 ATCTTCCTTAACCTTTCACCTCTC
1 ATCTTCCTTAACCTTTCACCTCTC
* * * *
88820139 ATCTTTCTCAACCTTTCATCTTTC
1 ATCTTCCTTAACCTTTCACCTCTC
*
88820163 ATGTTCCTTAA
1 ATCTTCCTTAA
88820174 TTCTTCACAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.34, G:0.02, T:0.46
Consensus pattern (24 bp):
ATCTTCCTTAACCTTTCACCTCTC
Found at i:88834104 original size:41 final size:41
Alignment explanation
Indices: 88834047--88834277 Score: 227
Period size: 41 Copynumber: 5.7 Consensus size: 41
88834037 TCGGGGTTTA
*
88834047 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
88834088 AATCCAAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * *
88834129 AA-CCGAA-CCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCC-AAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* *
88834169 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * *
88834210 AA-CCGAA-CCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCC-AAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * *
88834250 AATTCGAGCTTGGTCTTGAAGGGCTTTT
1 AATCCAAGCTTGGTCTCGAAGGGCTTTT
88834278 TGAGTTCCGA
Statistics
Matches: 148, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
40 60 0.41
41 88 0.59
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (41 bp):
AATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:88834167 original size:40 final size:40
Alignment explanation
Indices: 88834118--88834251 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 40
88834108 GGGCTTTTAA
*
88834118 GCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
1 GCCAATGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
* * * * * ***
88834158 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAA
1 GCCAATGTCATAA-CCGAACCTAGTTTCGAAGGGCCTTCGG
*
88834199 GCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
1 GCCAATGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
88834239 GCCAATGTCATAA
1 GCCAATGTCATAA
88834252 TTCGAGCTTG
Statistics
Matches: 74, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
40 43 0.58
41 31 0.42
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCAATGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
Found at i:88834197 original size:81 final size:81
Alignment explanation
Indices: 88834062--88834277 Score: 369
Period size: 81 Copynumber: 2.7 Consensus size: 81
88834052 GAGCTTGGTC
* * * * *
88834062 TCGAAGGGCTTTTGAGCCAGTGTCATAATCCAAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
88834127 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
88834143 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
88834208 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
* *
88834224 TCGAAGGGCCTTCGGGCCAATGTCATAATTCGAGCTTGGTCTTGAAGGGCTTTT
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTT
88834278 TGAGTTCCGA
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 128 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (81 bp):
TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
ATAACCGAACCTAGTT
Found at i:88842462 original size:24 final size:24
Alignment explanation
Indices: 88842427--88842479 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
88842417 CCAACACCGT
*
88842427 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCCAAATCC
* *
88842451 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTAATCAGCTCCCAAATCC
88842475 TCTCC
1 TCTCC
88842480 TGACAGCCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCCAAATCC
Found at i:88848801 original size:26 final size:27
Alignment explanation
Indices: 88848771--88848836 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
88848761 AGCATGGCTG
*
88848771 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGACAGAGCCA
*
88848797 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGACAGAGCCA
88848824 CCAGAACAGATAA
1 CCAGAACAGATAA
88848837 ATATGGAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
26 13 0.35
27 24 0.65
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.14
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGACAGAGCCA
Found at i:88848852 original size:27 final size:27
Alignment explanation
Indices: 88848771--88848854 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
88848761 AGCATGGCTG
88848771 CCAGAACAGAT-AATGT-GACAGAGTCA
1 CCAGAACAGATAAATGTGGA-AGAGTCA
* * *
88848797 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAAATGTGGAAGAGTCA
* *
88848824 CCAGAACAGATAAATATGGAATAGTCA
1 CCAGAACAGATAAATGTGGAAGAGTCA
88848851 CCAG
1 CCAG
88848855 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 11 0.23
27 36 0.75
28 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAAATGTGGAAGAGTCA
Found at i:88850323 original size:24 final size:24
Alignment explanation
Indices: 88850288--88850364 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
88850278 CCAACACCAT
*
88850288 TCTCCCTAATCAGCTCCTAAATCA
1 TCTCCCTTATCAGCTCCTAAATCA
* *
88850312 TCTCCCTTATCAGTTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCA
* * *
88850336 TCTCTCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCA
88850360 TCTCC
1 TCTCC
88850365 TAACAGCCTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.22, C:0.39, G:0.04, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCA
Found at i:88855905 original size:43 final size:43
Alignment explanation
Indices: 88855850--88855973 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
88855840 TACCGAGATG
* * *
88855850 TGATTACATGTAAGACCAAGTCTAGGACATTGGCATTG-T-AT
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
88855891 TGTAATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
1 TG--ATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
* * * *
88855936 TGATTATGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCG
88855974 ATATGAGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 2 0.03
43 65 0.90
44 1 0.01
45 4 0.06
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
Found at i:88874196 original size:28 final size:27
Alignment explanation
Indices: 88874148--88874210 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
88874138 AATCAATCAT
* *
88874148 ATACAGTCTGGGGCCTGAGCCCTTTACAG
1 ATACAGT-TTGGGCCTGAGCCCATT-CAG
* *
88874177 ATTCAGTTTGGGCCTTAGCCCATTCAG
1 ATACAGTTTGGGCCTGAGCCCATTCAG
88874204 ATACAGT
1 ATACAGT
88874211 CTTAGATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 9 0.31
28 14 0.48
29 6 0.21
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (27 bp):
ATACAGTTTGGGCCTGAGCCCATTCAG
Found at i:88876013 original size:49 final size:50
Alignment explanation
Indices: 88875935--88876032 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 50
88875925 GCTTGTAAAA
* * * *
88875935 CAATATTCTAATAGAAGGAGTGTAGTAAGGTTGAAACACCTAATTCTAAT
1 CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAAT
* *
88875985 CAATA-TCAAATAGATGAAGTGTAATAAGGTTGAAAAACCTTATTCTAA
1 CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAA
88876033 AATAGAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 37 0.88
50 5 0.12
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (50 bp):
CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAAT
Found at i:88876095 original size:18 final size:18
Alignment explanation
Indices: 88876069--88876103 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
88876059 TATAGATTTT
*
88876069 AATTTTATTTTATTTTAC
1 AATTGTATTTTATTTTAC
88876087 AATTGTATTTTATTTTA
1 AATTGTATTTTATTTTA
88876104 ATAAGGATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (18 bp):
AATTGTATTTTATTTTAC
Found at i:88886009 original size:26 final size:26
Alignment explanation
Indices: 88885980--88886072 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
88885970 TCATTTTCAA
88885980 ATGTTTGTTTATAAGGTTCTTTTGGC
1 ATGTTTGTTTATAAGGTTCTTTTGGC
* *
88886006 ATGTTGATGATGGCTTGAAAATGGTTACTTTT-TC
1 ATGTT--TG-T---TT-ATAA-GGTT-CTTTTGGC
88886040 AAATGTTTGTTTATAAGGTTCTTTTGGC
1 -A-TGTTTGTTTATAAGGTTCTTTTGGC
88886068 ATGTT
1 ATGTT
88886073 GATGATGGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 24
0.65 0.05 0.30
Matches are distributed among these distances:
26 9 0.18
27 6 0.12
28 7 0.14
29 4 0.08
30 2 0.04
32 2 0.04
33 4 0.08
34 7 0.14
35 6 0.12
36 4 0.08
ACGTcount: A:0.20, C:0.08, G:0.23, T:0.49
Consensus pattern (26 bp):
ATGTTTGTTTATAAGGTTCTTTTGGC
Found at i:88886042 original size:62 final size:62
Alignment explanation
Indices: 88885973--88886097 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
88885963 ATTTTAGTCA
88885973 TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
1 TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
88886035 TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
1 TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
88886097 T
1 T
88886098 GTGACATGTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.22, C:0.08, G:0.22, T:0.47
Consensus pattern (62 bp):
TTTTCAAATGTTTGTTTATAAGGTTCTTTTGGCATGTTGATGATGGCTTGAAAATGGTTACT
Found at i:88888721 original size:6 final size:6
Alignment explanation
Indices: 88888712--88888751 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
88888702 AGTAATCTTA
*
88888712 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTA ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
88888752 CCCAAAACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:88892288 original size:13 final size:13
Alignment explanation
Indices: 88892270--88892299 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
88892260 TTCTTATAAA
88892270 CATTTCATAGAAC
1 CATTTCATAGAAC
*
88892283 CATTTCATATAAC
1 CATTTCATAGAAC
88892296 CATT
1 CATT
88892300 CATCATCTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (13 bp):
CATTTCATAGAAC
Found at i:88892637 original size:183 final size:184
Alignment explanation
Indices: 88892398--88892737 Score: 475
Period size: 183 Copynumber: 1.9 Consensus size: 184
88892388 TGCCATAGTG
* * * * *
88892398 TCTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGTCATGGTATCTTTCAACCATGGTCTTG
1 TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * * * ** * *
88892463 TTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGATCTTATTCA-TTCCCGTCATGTTG
66 CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
*
88892527 CCATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
131 CAATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
** *
88892581 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTGTCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * *
88892646 CACATTTCATATCATGTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCATGTTG
66 CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
88892711 CAATGGTATCTTTCAACCATGGTCTTA
131 CAATGGTATCTTTCAACCATGGTCTTA
88892738 CACATTTCAT
Statistics
Matches: 134, Mismatches: 22, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
183 97 0.72
184 37 0.28
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (184 bp):
TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
CAATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
Found at i:88892746 original size:46 final size:46
Alignment explanation
Indices: 88892383--88892747 Score: 419
Period size: 46 Copynumber: 8.0 Consensus size: 46
88892373 TTATCTTCGA
* * * * *
88892383 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * *** *
88892429 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** * ** ***
88892475 TACATTGCCATGGTATCTTTCAACCATGATCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
** * * *
88892520 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
88892566 CACGTTGCCATGGAATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
88892612 CCTGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
88892658 CATGTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
88892704 CATGTTGCAATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
88892748 TTCAGAAAAC
Statistics
Matches: 276, Mismatches: 41, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
45 42 0.15
46 234 0.85
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:88898557 original size:29 final size:29
Alignment explanation
Indices: 88898512--88898574 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
88898502 ATACCGGCAA
88898512 ATGTGTGACACACGGCCTGGTACACGGTC
1 ATGTGTGACACACGGCCTGGTACACGGTC
* *
88898541 GTGTGTGACACATGGCCTGGTACACGGTC
1 ATGTGTGACACACGGCCTGGTACACGGTC
88898570 ATGTG
1 ATGTG
88898575 GTTAGGCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.24
Consensus pattern (29 bp):
ATGTGTGACACACGGCCTGGTACACGGTC
Found at i:88903326 original size:24 final size:24
Alignment explanation
Indices: 88903291--88903352 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
88903281 AGGACCTAAG
*
88903291 TATGTATCTGCATTTGATTATGAA
1 TATGTATTTGCATTTGATTATGAA
*
88903315 TATGTATTTGCATCTGATTATGAA
1 TATGTATTTGCATTTGATTATGAA
88903339 TATGTATTTG-ATTT
1 TATGTATTTGCATTT
88903353 TGAAAATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 3 0.09
24 32 0.91
ACGTcount: A:0.27, C:0.06, G:0.16, T:0.50
Consensus pattern (24 bp):
TATGTATTTGCATTTGATTATGAA
Found at i:88908175 original size:17 final size:17
Alignment explanation
Indices: 88908153--88908185 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
88908143 ATCTGACAAA
*
88908153 GCCCGATCAATAATAAT
1 GCCCGATAAATAATAAT
88908170 GCCCGATAAATAATAA
1 GCCCGATAAATAATAA
88908186 ATGATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.12, T:0.21
Consensus pattern (17 bp):
GCCCGATAAATAATAAT
Found at i:88909292 original size:36 final size:36
Alignment explanation
Indices: 88909245--88909316 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
88909235 TTATGCTTAC
88909245 TTAGTTTTATTTCCCTATTTTAGAGTAAATCAGAAG
1 TTAGTTTTATTTCCCTATTTTAGAGTAAATCAGAAG
88909281 TTAGTTTTATTTCCCTATTTTAGAGTAAATCAGAAG
1 TTAGTTTTATTTCCCTATTTTAGAGTAAATCAGAAG
88909317 CTCGTTGGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (36 bp):
TTAGTTTTATTTCCCTATTTTAGAGTAAATCAGAAG
Found at i:88917635 original size:18 final size:18
Alignment explanation
Indices: 88917612--88917652 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
88917602 TCTTAGCAAC
88917612 CAAACCCAGAATTTTATG
1 CAAACCCAGAATTTTATG
88917630 CAAACCCAGAATTTTATG
1 CAAACCCAGAATTTTATG
88917648 CAAAC
1 CAAAC
88917653 AGGCTTACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.24
Consensus pattern (18 bp):
CAAACCCAGAATTTTATG
Found at i:88919997 original size:16 final size:17
Alignment explanation
Indices: 88919970--88920001 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
88919960 TACTTTCGTA
88919970 AAATATTTTCAAAACAC
1 AAATATTTTCAAAACAC
88919987 AAATA-TTTCAAAACA
1 AAATATTTTCAAAACA
88920002 TTGTGGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (17 bp):
AAATATTTTCAAAACAC
Found at i:88924398 original size:69 final size:69
Alignment explanation
Indices: 88924283--88924611 Score: 376
Period size: 69 Copynumber: 4.8 Consensus size: 69
88924273 AACCTTTATG
* * * * *
88924283 TCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCCAACACAGTTAGCTAGAGCAAAGCTCCCA
1 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
88924348 ACTA
66 ACTA
* * * *
88924352 TCATATAAAGGCTCGCAAGATAAAAACCACAGCCTCCAACATAGTTAGTGAGAGCAAAGC-CCTA
1 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
** *
88924416 GTTG
66 ACTA
* * *
88924420 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCTAAGCTCCCA
1 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
*
88924485 ACTG
66 ACTA
* **** *
88924489 TCATATTAAGGCTCGC-AGTTTAAAAATAATAGCCTCCAACATAGTTAGCGAGATCAAAGCTCCC
1 TCATATTAAGGCTCGCAAG-ATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCC
*
88924553 AAGTGA
65 AACT-A
* * * *
88924559 -CATATTAAGGCTCGTAGGATAAAAACCGCAACCTCAAACATAGTTAGCGAGAG
1 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAG
88924612 TTGGAAACTC
Statistics
Matches: 214, Mismatches: 42, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
68 60 0.28
69 153 0.71
70 1 0.00
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (69 bp):
TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
ACTA
Found at i:88924527 original size:137 final size:137
Alignment explanation
Indices: 88924281--88924611 Score: 434
Period size: 137 Copynumber: 2.4 Consensus size: 137
88924271 ACAACCTTTA
* * * *
88924281 TGTCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCCAACACAGTTAGCTAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGCAGGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTCC
* *
88924346 CAACTATCATATAAAGGCTCGCAAGATAAAAACCACAGCCTCCAACATAGTTAGTGAGAGCAAAG
66 CAACTATCATATAAAGGCTCGCAAGATAAAAACAACAGCCTCCAACATAGTTAGCGAGAGCAAAG
*
88924411 -CCCTAG
131 CCCCAAG
* *
88924417 TTGTCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCTAAGCTC
1 -TGTCATATTAAGGCTCGCAGGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTC
* * * * * *
88924482 CCAACTGTCATATTAAGGCTCGC-AGTTTAAAAATAATAGCCTCCAACATAGTTAGCGAGATCAA
65 CCAACTATCATATAAAGGCTCGCAAG-ATAAAAACAACAGCCTCCAACATAGTTAGCGAGAGCAA
88924546 AGCTCCCAAG
129 AGC-CCCAAG
* * * *
88924556 TGACATATTAAGGCTCGTAGGATAAAAACCGCAACC-TCAAACATAGTTAGCGAGAG
1 TGTCATATTAAGGCTCGCAGGATAAAAACCGCAGCCTTC-AACACAGTTAGCGAGAG
88924612 TTGGAAACTC
Statistics
Matches: 170, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
136 2 0.01
137 115 0.68
138 48 0.28
139 5 0.03
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.21
Consensus pattern (137 bp):
TGTCATATTAAGGCTCGCAGGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTCC
CAACTATCATATAAAGGCTCGCAAGATAAAAACAACAGCCTCCAACATAGTTAGCGAGAGCAAAG
CCCCAAG
Found at i:88924713 original size:58 final size:58
Alignment explanation
Indices: 88924621--88924831 Score: 221
Period size: 58 Copynumber: 3.7 Consensus size: 58
88924611 GTTGGAAACT
* * * * * *
88924621 CCCAGCTGTGTTATCTTTCAAAATTTTATCAAGTATTAAGTAGCTCGCAAATTCACATC
1 CCCAGCTG-GTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* *
88924680 CCCAGCTGGTTATCCTTCAAAATTTTTTGAAGTATAAAATAGCTCGCGGATCCACATC
1 CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* * * * * * *
88924738 CCTAGCTAGTTATCTTTCAAAATTCTATT-AGGTATGAAATAGCTTGCAGATCCACATC
1 CCCAGCTGGTTATCCTTCAAAATT-TTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* * *
88924796 CCCAGTTTGTTAT-CTTC-AAATTTTCTCAAGTATAAA
1 CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAA
88924832 GCTACTCGTG
Statistics
Matches: 126, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
55 2 0.02
56 12 0.10
57 3 0.02
58 98 0.78
59 11 0.09
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (58 bp):
CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
Found at i:88925412 original size:13 final size:13
Alignment explanation
Indices: 88925394--88925420 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
88925384 GGGATACGCT
88925394 CGTGTCCTCAGCC
1 CGTGTCCTCAGCC
88925407 CGTGTCCTCAGCC
1 CGTGTCCTCAGCC
88925420 C
1 C
88925421 ATAATAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.48, G:0.22, T:0.22
Consensus pattern (13 bp):
CGTGTCCTCAGCC
Found at i:88937994 original size:20 final size:21
Alignment explanation
Indices: 88937969--88938007 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
88937959 CTCTTCAAAC
88937969 AGGGC-ACACGCCCGTGTGAA
1 AGGGCAACACGCCCGTGTGAA
88937989 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
88938008 GTCATTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGAA
Found at i:88940137 original size:43 final size:41
Alignment explanation
Indices: 88939990--88940146 Score: 111
Period size: 43 Copynumber: 3.7 Consensus size: 41
88939980 TGTGTTCTCG
* * * *
88939990 TGTAAGACCACATTTGGGACGTTGGCATCAATATGTGATT-T
1 TGTAAGACCATATCTGGGACGTTGGCATCGA-ATGTGATTCA
* * * * * *
88940031 TGAGTAAGACCATGTCTGAGACATCGTCATCGTAATTGTGATTCG
1 T--GTAAGACCATATCTGGGACGTTGGCATCG-AA-TGTGATTCA
*
88940076 TGTAAGACCCTATCTGGGACAG-TGGCATCGACATGTGATTACA
1 TGTAAGACCATATCTGGGAC-GTTGGCATCGA-ATGTGATT-CA
* *
88940119 TGTAAGACCATGTTTGGGACGTTGGCAT
1 TGTAAGACCATATCTGGGACGTTGGCAT
88940147 TGTACGATAT
Statistics
Matches: 88, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
41 1 0.01
42 9 0.10
43 69 0.78
44 8 0.09
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGACGTTGGCATCGAATGTGATTCA
Found at i:88942990 original size:94 final size:94
Alignment explanation
Indices: 88942838--88943008 Score: 233
Period size: 94 Copynumber: 1.8 Consensus size: 94
88942828 TAAGAAGCCA
* *
88942838 ACGCCATGTCCCAGACATGGTCTTACACCGGCTTTCATATAGCGAGGTCGATGCCATGTCCCAGA
1 ACGCCATGTCCCAGACATGGTCTTACACCAGCTTTCATATAGCGAGGCCGATGCCATGTCCCAGA
88942903 CAAGTCTTACACTAACACACAACAAGCTG
66 CAAGTCTTACACTAACACACAACAAGCTG
* *
88942932 ACGCCATGTCCCA-A-ATAGGTCTTACACTAGCTTGT-ATATCGCGAGAGGCCGATG-CATGTCC
1 ACGCCATGTCCCAGACAT-GGTCTTACACCAGCTT-TCATATAGC--GAGGCCGATGCCATGTCC
*
88942993 CAGACATGTCTTACAC
62 CAGACAAGTCTTACAC
88943009 GAGCTCTCAT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
92 2 0.03
93 21 0.31
94 36 0.53
95 9 0.13
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (94 bp):
ACGCCATGTCCCAGACATGGTCTTACACCAGCTTTCATATAGCGAGGCCGATGCCATGTCCCAGA
CAAGTCTTACACTAACACACAACAAGCTG
Found at i:88944761 original size:8 final size:8
Alignment explanation
Indices: 88944736--88944777 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
88944726 CTTATACAAA
88944736 TTAAATAAT
1 TTAAAT-AT
*
88944745 TTATA-AT
1 TTAAATAT
*
88944752 TTATATAT
1 TTAAATAT
88944760 TTAAATAT
1 TTAAATAT
88944768 TTAAATAT
1 TTAAATAT
88944776 TT
1 TT
88944778 TGTAGATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 7 0.23
8 19 0.63
9 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TTAAATAT
Found at i:88944843 original size:22 final size:22
Alignment explanation
Indices: 88944798--88944844 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
88944788 TTTTTATTTT
*
88944798 AAAAAATAAATCATAATAAGTA
1 AAAAAATAAATAATAATAAGTA
*
88944820 AAAAAATAAATTAATATTAA-TA
1 AAAAAATAAA-TAATAATAAGTA
88944842 AAA
1 AAA
88944845 TGTTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAAAATAAATAATAATAAGTA
Found at i:88944956 original size:18 final size:16
Alignment explanation
Indices: 88944922--88944968 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
88944912 ATATTTTATT
*
88944922 TAATAAATTTAATTTG
1 TAATAAATTAAATTTG
88944938 TAAATAAATTAATATTTG
1 T-AATAAATTAA-ATTTG
88944956 TAATAAAGTTAAA
1 TAATAAA-TTAAA
88944969 ATAGTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 1 0.04
17 16 0.59
18 10 0.37
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (16 bp):
TAATAAATTAAATTTG
Found at i:88951396 original size:20 final size:19
Alignment explanation
Indices: 88951346--88951398 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
88951336 TAACCTAGAA
*
88951346 AAAAAACATATAA-TTTAT
1 AAAAAATATATAATTTTAT
* *
88951364 AAAAAATTTATAATTTTTT
1 AAAAAATATATAATTTTAT
88951383 AAAAAATATGATAATT
1 AAAAAATAT-ATAATT
88951399 AAAAATATTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 11 0.38
19 12 0.41
20 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAAAATATATAATTTTAT
Found at i:88951449 original size:20 final size:22
Alignment explanation
Indices: 88951420--88951472 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
88951410 AATTAATAAT
*
88951420 ATTATTAAAAACGT-AAA-AAA
1 ATTATAAAAAACGTAAAAGAAA
**
88951440 ATTATAAAAATTGTAAAAGAAA
1 ATTATAAAAAACGTAAAAGAAA
*
88951462 ATTAAAAAAAA
1 ATTATAAAAAA
88951473 GTTTAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 11 0.42
21 3 0.12
22 12 0.46
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.25
Consensus pattern (22 bp):
ATTATAAAAAACGTAAAAGAAA
Found at i:88951612 original size:23 final size:23
Alignment explanation
Indices: 88951586--88951641 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
88951576 ATTATTTTGA
*
88951586 ATTTTTTAAATTTATA-AT-GAT
1 ATTTTTTAAATTTATATATAAAT
*
88951607 ATATTTTACAATTTTATATATAAAT
1 ATTTTTTA-AA-TTTATATATAAAT
88951632 ATTTTTTAAA
1 ATTTTTTAAA
88951642 ATTTTTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 7 0.25
22 2 0.07
23 6 0.21
24 4 0.14
25 9 0.32
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (23 bp):
ATTTTTTAAATTTATATATAAAT
Found at i:88953586 original size:18 final size:18
Alignment explanation
Indices: 88953563--88953624 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
88953553 ACATCTTGAT
88953563 CTGAAGCCCGAAGTCTAA
1 CTGAAGCCCGAAGTCTAA
**
88953581 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT-CT-AA
* *
88953602 CGGAAGCCCGAAGGCTAA
1 CTGAAGCCCGAAGTCTAA
88953620 CTGAA
1 CTGAA
88953625 ACTCGTATGA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 13 0.38
19 7 0.21
20 6 0.18
21 8 0.24
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (18 bp):
CTGAAGCCCGAAGTCTAA
Found at i:88955243 original size:5 final size:5
Alignment explanation
Indices: 88955233--88955323 Score: 61
Period size: 5 Copynumber: 18.6 Consensus size: 5
88955223 TAATTTAAAA
*
88955233 ATAAT ATAAT ATAAT ATAAT AT-AT ATAAT A-AAGT ATAAT A-ACAT AGAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA-T ATAAT ATA-AT ATAAT
* *
88955282 -TTAT A-AAT A-AAT AATAAT A-AAA ATAAT ATAAT GGATAAT ATA
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT --ATAAT ATA
88955324 TAAATAAAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 22
0.72 0.05 0.23
Matches are distributed among these distances:
4 18 0.26
5 41 0.59
6 6 0.09
7 5 0.07
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (5 bp):
ATAAT
Found at i:88955260 original size:24 final size:24
Alignment explanation
Indices: 88955233--88955329 Score: 68
Period size: 24 Copynumber: 4.2 Consensus size: 24
88955223 TAATTTAAAA
88955233 ATAATATAATATAATATAATATAT
1 ATAATATAATATAATATAATATAT
*
88955257 ATAATA-AAGTATAATA-ACATAGA-
1 ATAATATAA-TATAATATA-ATATAT
*
88955280 AT-TTATAA-ATAA-ATAATA-AT
1 ATAATATAATATAATATAATATAT
*
88955300 A-AAAATAATATAATGGATAATATAT
1 ATAATATAATATAAT--ATAATATAT
88955325 A-AATA
1 ATAATA
88955330 AAAAATATAT
Statistics
Matches: 57, Mismatches: 5, Indels: 21
0.69 0.06 0.25
Matches are distributed among these distances:
19 1 0.02
20 9 0.16
21 9 0.16
22 2 0.04
23 7 0.12
24 23 0.40
25 6 0.11
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (24 bp):
ATAATATAATATAATATAATATAT
Found at i:88955398 original size:21 final size:19
Alignment explanation
Indices: 88955372--88955414 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
88955362 TATAAAAATT
* *
88955372 AAATAATATATAAAGTATTTA
1 AAATAA-AT-TAAAATATATA
88955393 AAATAAATTAAAATATATA
1 AAATAAATTAAAATATATA
88955412 AAA
1 AAA
88955415 GGATTAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 2 0.10
21 6 0.30
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
AAATAAATTAAAATATATA
Found at i:88955421 original size:28 final size:30
Alignment explanation
Indices: 88955359--88955424 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 30
88955349 TACAACTAAT
* *
88955359 ATTTATAA-AAATTAAATAATATATAAAGT
1 ATTTAAAATAAATTAAATAATATATAAAGG
88955388 ATTTAAAATAAATT-AA-AATATATAAAAGG
1 ATTTAAAATAAATTAAATAATATAT-AAAGG
88955417 A-TTAAAAT
1 ATTTAAAAT
88955425 TAAAAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
28 14 0.42
29 14 0.42
30 5 0.15
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.35
Consensus pattern (30 bp):
ATTTAAAATAAATTAAATAATATATAAAGG
Found at i:88955433 original size:28 final size:28
Alignment explanation
Indices: 88955371--88955434 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 28
88955361 TTATAAAAAT
*
88955371 TAAATAATATATAAAGTATTTAAAATAAA
1 TAAA-AATATATAAAGGATTTAAAATAAA
*
88955400 TTAAAATATATAAAAGGA-TTAAAATTAAA
1 TAAAAATATAT-AAAGGATTTAAAA-TAAA
88955429 -AAAAAT
1 TAAAAAT
88955435 TGAAAACTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (28 bp):
TAAAAATATATAAAGGATTTAAAATAAA
Found at i:88957307 original size:44 final size:44
Alignment explanation
Indices: 88957000--88957392 Score: 259
Period size: 44 Copynumber: 8.9 Consensus size: 44
88956990 ATCTATTATT
* * *
88957000 TTCGATCTGCTCTCT-ACCAATATAGAGACGCCAGATCTG-TCATC
1 TTCGATCTGCTCTCTGA-CAATACAGAGACGCCAAATCAGCT-ATC
* * * *
88957044 TTCAATCGGCTCTCTGACAATACGGAGACGCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCT-ATC
* * * *
88957088 TTTGATCTGCTCTCTGACCATATAGAGATGCCAAAT---C-ATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATC
* * ** * * *
88957128 TTAGATTTGCT-TCAAACGTAA-ACACGTGAAAGCCAAATCAACTATGTC
1 TTCGATCTGCTCTCTGAC--AATACA-GAG-ACGCCAAATCAGCTA--TC
* * * *
88957176 TTCGATCTGCTCCCTGTCGAATACAGAGATGTCAAATCTA-CTATC
1 TTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATC-AGCTATC
* *
88957221 TTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATC
*
88957265 TTCGATCTGCTCTCTGATAATACAGAGACGCCAAATCAGCTATGTC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTA--TC
* ** * * *
88957311 TTCGATCTGCTCCCTTTCGAATACAGAGATGCCAAATCTG-TTTC
1 TTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCAGCTATC
* * * * *
88957355 TTTGATTTGTTCTTTGACAATACAGAGATGCCAAATCA
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCA
88957393 TCTTGGATCT
Statistics
Matches: 276, Mismatches: 54, Indels: 39
0.75 0.15 0.11
Matches are distributed among these distances:
39 4 0.01
40 14 0.05
41 3 0.01
42 8 0.03
43 19 0.07
44 140 0.51
45 19 0.07
46 18 0.07
47 30 0.11
48 16 0.06
49 5 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATC
Found at i:88967415 original size:31 final size:32
Alignment explanation
Indices: 88967374--88967436 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
88967364 TTATTTATAA
*
88967374 AAGATATTTAT-TAATTAAATA-ATTATATTAT
1 AAGATATTTATGTAA-TAAATATATTAAATTAT
*
88967405 AAGATTTTTATGTAATAAATATATTAAATTAT
1 AAGATATTTATGTAATAAATATATTAAATTAT
88967437 GACAAGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (32 bp):
AAGATATTTATGTAATAAATATATTAAATTAT
Found at i:88969214 original size:45 final size:45
Alignment explanation
Indices: 88969164--88969274 Score: 161
Period size: 45 Copynumber: 2.5 Consensus size: 45
88969154 CGACTACTAT
88969164 TACTGTTACTGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACCGATTCAG-CACTTTGTGTGTCGAA
* * *
88969209 TACTGTTACTGTTACCGTTATCGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAA
* *
88969254 TACTATTAATGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
88969275 TATTCCGGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAA
Found at i:88969267 original size:51 final size:50
Alignment explanation
Indices: 88969149--88969274 Score: 138
Period size: 45 Copynumber: 2.6 Consensus size: 50
88969139 CAGGCACCTA
* * *
88969149 TGTGCCGACTACTATTACTGTTACTGTTACTGTTACCGATTCGACACTTTG
1 TGTGTCGAATACTATTA-TGTTACTGTTACCGTTACCGATTCGACACTTTG
*
88969200 TGTGTCGAATAC-----TGTTACTGTTACCGTTATCGATTC-AGCACTTTG
1 TGTGTCGAATACTATTATGTTACTGTTACCGTTACCGATTCGA-CACTTTG
*
88969245 TGTGTTGAATACTATTAATGTTACTGTTAC
1 TGTGTCGAATACTATT-ATGTTACTGTTAC
88969275 TATTCCGGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
44 1 0.02
45 40 0.63
51 22 0.35
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.41
Consensus pattern (50 bp):
TGTGTCGAATACTATTATGTTACTGTTACCGTTACCGATTCGACACTTTG
Found at i:88969475 original size:18 final size:18
Alignment explanation
Indices: 88969454--88969639 Score: 110
Period size: 18 Copynumber: 10.3 Consensus size: 18
88969444 TAACTGATTA
*
88969454 TTACTAAATAATTAACTG
1 TTACTGAATAATTAACTG
* * *
88969472 TTACCGGATAATTGACTG
1 TTACTGAATAATTAACTG
*
88969490 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATTA-ACTG
* * *
88969508 TTACTGAATAACTAAATA
1 TTACTGAATAATTAACTG
* * *
88969526 TTACTAAATAATTGA-TCA
1 TTACTGAATAATTAACT-G
* * *
88969544 TTACTGAATAACTGATTG
1 TTACTGAATAATTAACTG
* *
88969562 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTAACTG
*
88969580 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTAACTG
* * *
88969599 TTACTGAATACTTGA-TT
1 TTACTGAATAATTAACTG
* *
88969616 TTATTGAATAATTGACTG
1 TTACTGAATAATTAACTG
88969634 TTACTG
1 TTACTG
88969640 GATGACCGAT
Statistics
Matches: 132, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
17 20 0.15
18 92 0.70
19 20 0.15
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (18 bp):
TTACTGAATAATTAACTG
Found at i:88969584 original size:54 final size:54
Alignment explanation
Indices: 88969526--88969638 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
88969516 TAACTAAATA
*
88969526 TTACTAAATAA-TTGATCATTACTGAATAAC-TGATTGTCACTGAATGAA-TGACTG
1 TTACTAAATAACTTAATCATTACTGAAT-ACTTGATT-TCACTGAAT-AATTGACTG
* ** * *
88969580 TTACTGAATAACTTAATTGTTACTGAATACTTGATTTTATTGAATAATTGACTG
1 TTACTAAATAACTTAATCATTACTGAATACTTGATTTCACTGAATAATTGACTG
88969634 TTACT
1 TTACT
88969639 GGATGACCGA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
53 2 0.04
54 30 0.60
55 18 0.36
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41
Consensus pattern (54 bp):
TTACTAAATAACTTAATCATTACTGAATACTTGATTTCACTGAATAATTGACTG
Found at i:88969624 original size:72 final size:72
Alignment explanation
Indices: 88969442--88969644 Score: 178
Period size: 72 Copynumber: 2.8 Consensus size: 72
88969432 AAAGGTATAA
* * * * * * * * * *
88969442 AATAACTGATTATTACTAAATAATT-AACTGTTACCGGATAATTGACTGTTACTGGAT-ATTAGA
1 AATAACTAAATATTACTAAATAATTGATC-ATTACTGAATAACTGACTGTCACTGAATGAAT-GA
88969505 CTGTTACTG
64 CTGTTACTG
*
88969514 AATAACTAAATATTACTAAATAATTGATCATTACTGAATAACTGATTGTCACTGAATGAATGACT
1 AATAACTAAATATTACTAAATAATTGATCATTACTGAATAACTGACTGTCACTGAATGAATGACT
88969579 GTTACTG
66 GTTACTG
* * * * * * * * *
88969586 AATAACTTAATTGTTACTGAATACTTGAT-TTTATTGAATAATTGACTGTTACTGGATGA
1 AATAAC-TAAATATTACTAAATAATTGATCATTACTGAATAACTGACTGTCACTGAATGA
88969645 CCGATCAATT
Statistics
Matches: 107, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
72 85 0.79
73 22 0.21
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.38
Consensus pattern (72 bp):
AATAACTAAATATTACTAAATAATTGATCATTACTGAATAACTGACTGTCACTGAATGAATGACT
GTTACTG
Found at i:88969639 original size:54 final size:55
Alignment explanation
Indices: 88969544--88969724 Score: 154
Period size: 54 Copynumber: 3.2 Consensus size: 55
88969534 TAATTGATCA
* * *
88969544 TTACTGAATAACTGATTGTCACTGAATGAA-TGACTGTTACTGAATAACTTAATTG
1 TTACTGAATAACTGATTATTATTGAAT-AATTGACTGTTACTGAATAACTTAATTG
* * *
88969599 TTACTGAAT-ACTTGATT-TTATTGAATAATTGACTGTTACTGGATGACCGATCAATTG
1 TTACTGAATAAC-TGATTATTATTGAATAATTGACTGTTACTGAAT-AAC--TTAATTG
* * * * *
88969656 ATCGATACTGAATAACTGGTTATTATTGAATAATTGATTGTTACCGAATAAC-TGACTG
1 -T---TACTGAATAACTGATTATTATTGAATAATTGACTGTTACTGAATAACTTAATTG
88969714 TTACTGAATAA
1 TTACTGAATAA
88969725 ATAATTGTTC
Statistics
Matches: 102, Mismatches: 13, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
53 2 0.02
54 33 0.32
55 16 0.16
57 7 0.07
58 4 0.04
61 14 0.14
62 26 0.25
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (55 bp):
TTACTGAATAACTGATTATTATTGAATAATTGACTGTTACTGAATAACTTAATTG
Found at i:88969733 original size:18 final size:18
Alignment explanation
Indices: 88969506--88969737 Score: 90
Period size: 18 Copynumber: 12.5 Consensus size: 18
88969496 GATATTAGAC
* * *
88969506 TGTTACTGAATAACTAAA
1 TGTTACTGAATAAATGAT
* * *
88969524 TATTACTAAATAATTGAT
1 TGTTACTGAATAAATGAT
** *
88969542 CATTACTGAATAACTGAT
1 TGTTACTGAATAAATGAT
* * *
88969560 TGTCACTGAATGAATGAC
1 TGTTACTGAATAAATGAT
* *
88969578 TGTTACTGAATAACTTAAT
1 TGTTACTGAATAA-ATGAT
**
88969597 TGTTACTGAATACTTGAT
1 TGTTACTGAATAAATGAT
* * *
88969615 T-TTATTGAATAATTGAC
1 TGTTACTGAATAAATGAT
*
88969632 TGTTACTGGATGACCGATCAATTGAT
1 TGTTAC----TGA---AT-AAATGAT
* * * *
88969658 CGATACTGAATAACTGGT
1 TGTTACTGAATAAATGAT
* * *
88969676 TATTATTGAATAATTGAT
1 TGTTACTGAATAAATGAT
* * *
88969694 TGTTACCGAATAACTGAC
1 TGTTACTGAATAAATGAT
*
88969712 TGTTACTGAATAAATAAT
1 TGTTACTGAATAAATGAT
88969730 TGTT-CTGA
1 TGTTACTGA
88969738 TTGTTAATGA
Statistics
Matches: 159, Mismatches: 45, Indels: 21
0.71 0.20 0.09
Matches are distributed among these distances:
17 18 0.11
18 107 0.67
19 16 0.10
22 6 0.04
25 2 0.01
26 10 0.06
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTTACTGAATAAATGAT
Found at i:88973336 original size:5 final size:5
Alignment explanation
Indices: 88973326--88973414 Score: 62
Period size: 5 Copynumber: 17.6 Consensus size: 5
88973316 TAATTTAAAA
*
88973326 ATAAT ATAAT ATAAT ATAATAT ATAAT AAAAT ATAAT A-ACAT ATAAT
1 ATAAT ATAAT ATAAT AT-A-AT ATAAT ATAAT ATAAT ATA-AT ATAAT
* *
88973373 -TTAT A-AAT A-AAT AATAAT A-AAA ATAAT ATAAT GGATAAT ATA
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT --ATAAT ATA
88973415 TAAATAAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
4 13 0.19
5 40 0.59
6 6 0.09
7 9 0.13
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:88973362 original size:27 final size:26
Alignment explanation
Indices: 88973305--88973402 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 26
88973295 CAATCAATGA
* * *
88973305 ATAATAATACATAATTTAAAAAT-AAT
1 ATAATAA-ATATAATATATAAATAAAT
88973331 ATAATATAATATAATATAT-AATAAAAT
1 ATAATA-AATATAATATATAAAT-AAAT
*
88973358 ATAATAACATATAATTTATAAATAAAT
1 ATAATAA-ATATAATATATAAATAAAT
*
88973385 AATAATAAAAATAATATA
1 -ATAATAAATATAATATA
88973403 ATGGATAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
25 3 0.05
26 15 0.25
27 32 0.53
28 10 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (26 bp):
ATAATAAATATAATATATAAATAAAT
Found at i:88973411 original size:39 final size:38
Alignment explanation
Indices: 88973326--88973427 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 38
88973316 TAATTTAAAA
88973326 ATAATATAATATAATATAATATATAATAAAATATAATAACAT
1 ATAATAT-ATA-AATA-AATA-ATAATAAAATATAATAACAT
*
88973368 ATAATTTATAAATAAATAATAATAAAA-ATAATATA-AT
1 ATAATATATAAATAAATAATAATAAAATATAATA-ACAT
*
88973405 GGATAATATATAAATAAAAAATA
1 --ATAATATATAAATAAATAATA
88973428 TATATCATTT
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
37 8 0.15
38 10 0.19
39 23 0.43
40 4 0.07
41 3 0.06
42 6 0.11
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (38 bp):
ATAATATATAAATAAATAATAATAAAATATAATAACAT
Found at i:88973504 original size:19 final size:21
Alignment explanation
Indices: 88973463--88973506 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
88973453 TATAAAAATT
* *
88973463 AAATAATATATAAAGTATTTA
1 AAATAATATATAAAATATATA
88973484 AAATAA-AT-TAAAATATATA
1 AAATAATATATAAAATATATA
88973503 AAAT
1 AAAT
88973507 TAAAAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 13 0.62
20 2 0.10
21 6 0.29
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
AAATAATATATAAAATATATA
Found at i:88973512 original size:26 final size:29
Alignment explanation
Indices: 88973458--88973515 Score: 77
Period size: 26 Copynumber: 2.1 Consensus size: 29
88973448 ACACGTATAA
*
88973458 AAATTAAATAATATATAAAGTATTTAAAAT
1 AAATTAAATAATATATAAAG-ATTAAAAAT
88973488 AAATT-AA-AATATATAAA-ATTAAAAAT
1 AAATTAAATAATATATAAAGATTAAAAAT
88973514 AA
1 AA
88973516 TTGAAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 10 0.37
28 10 0.37
29 2 0.07
30 5 0.19
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (29 bp):
AAATTAAATAATATATAAAGATTAAAAAT
Found at i:88982026 original size:11 final size:11
Alignment explanation
Indices: 88982010--88982035 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
88982000 CCTTGGAAAA
88982010 ATAACAATTAT
1 ATAACAATTAT
88982021 ATAACAATTAT
1 ATAACAATTAT
88982032 ATAA
1 ATAA
88982036 TATTACATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAACAATTAT
Found at i:88988856 original size:42 final size:43
Alignment explanation
Indices: 88988745--88988863 Score: 136
Period size: 44 Copynumber: 2.8 Consensus size: 43
88988735 TGATATGTGT
* *
88988745 TTTCATGTAAGACCAC-GTCTGGGACGTTGGCATCAACTTATGA
1 TTTCGTGTAAGACC-CTGTCTGGGACATTGGCATCAACTTATGA
* *
88988788 TTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGA
1 TTT-CGTGTAAGACCCTGTCTGGGACATTGGCATC-AACTTATGA
* *
88988831 TTTCGTGTAAGACCCTGTCTAGGACAGTGGCAT
1 TTTCGTGTAAGACCCTGTCTGGGACATTGGCAT
88988864 TGATATTCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
42 27 0.41
43 9 0.14
44 29 0.44
45 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
TTTCGTGTAAGACCCTGTCTGGGACATTGGCATCAACTTATGA
Found at i:88988894 original size:43 final size:42
Alignment explanation
Indices: 88988789--88988897 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
88988779 AACTTATGAT
* * * **
88988789 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
1 TTACGTGTAAGACCACGTCTAGGACAGTGGCATCGTATTCAA
* *
88988831 TTTCGTGTAAGACC-CTGTCTAGGACAGTGGCATTGATATTCAA
1 TTACGTGTAAGACCAC-GTCTAGGACAGTGGCATCG-TATTCAA
*
88988874 TTACATGTAAGACCACGTCTAGGA
1 TTACGTGTAAGACCACGTCTAGGA
88988898 TGTTGGTATT
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 29 0.53
43 25 0.45
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCTAGGACAGTGGCATCGTATTCAA
Found at i:88995203 original size:134 final size:134
Alignment explanation
Indices: 88994963--88995230 Score: 536
Period size: 134 Copynumber: 2.0 Consensus size: 134
88994953 TTGGTAAATG
88994963 GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
1 GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
88995028 CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
66 CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
88995093 GCTA
131 GCTA
88995097 GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
1 GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
88995162 CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
66 CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
88995227 GCTA
131 GCTA
88995231 TGTATTTTGT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 134 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (134 bp):
GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
GCTA
Found at i:88996181 original size:12 final size:12
Alignment explanation
Indices: 88996164--88996189 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
88996154 TTCAATTTAG
88996164 GTATTTGATTTC
1 GTATTTGATTTC
88996176 GTATTTGATTTC
1 GTATTTGATTTC
88996188 GT
1 GT
88996190 GTAAGACCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.19, T:0.58
Consensus pattern (12 bp):
GTATTTGATTTC
Found at i:88998229 original size:28 final size:28
Alignment explanation
Indices: 88998189--88998245 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
88998179 AAGATGAGAA
88998189 TAAACTTGACATAAAGGCTCCAGTGGAG
1 TAAACTTGACATAAAGGCTCCAGTGGAG
88998217 TAAACTTGACATAAAGGCTCCAGTGGAG
1 TAAACTTGACATAAAGGCTCCAGTGGAG
88998245 T
1 T
88998246 CAGCACCACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (28 bp):
TAAACTTGACATAAAGGCTCCAGTGGAG
Found at i:89014865 original size:29 final size:30
Alignment explanation
Indices: 89014823--89014888 Score: 107
Period size: 29 Copynumber: 2.2 Consensus size: 30
89014813 AATTGAACCA
* *
89014823 TCCATCAAAATACAAGCATCAA-TAAATTG
1 TCCATCAAAATACAACCATCAATTAAATCG
89014852 TCCATCAAAATACAACCATCAATTAAATCG
1 TCCATCAAAATACAACCATCAATTAAATCG
89014882 TCCATCA
1 TCCATCA
89014889 CCGAAATACG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.45, C:0.26, G:0.05, T:0.24
Consensus pattern (30 bp):
TCCATCAAAATACAACCATCAATTAAATCG
Found at i:89041574 original size:10 final size:10
Alignment explanation
Indices: 89041559--89041617 Score: 77
Period size: 10 Copynumber: 6.0 Consensus size: 10
89041549 AAATTTTAGG
*
89041559 ATTTATTTTT
1 ATTTATCTTT
89041569 ATTTATCTTT
1 ATTTATCTTT
89041579 ATTTATCTTT
1 ATTTATCTTT
*
89041589 AATTATCTTT
1 ATTTATCTTT
89041599 ATTT-T-TTGT
1 ATTTATCTT-T
89041608 ATTTATCTTT
1 ATTTATCTTT
89041618 TAGAATTTCA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
8 2 0.05
9 6 0.14
10 33 0.77
11 2 0.05
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:89042554 original size:12 final size:12
Alignment explanation
Indices: 89042537--89042562 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
89042527 CTACTTCCCC
89042537 TTTACTATTATT
1 TTTACTATTATT
89042549 TTTACTATTATT
1 TTTACTATTATT
89042561 TT
1 TT
89042563 CATTATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:89047114 original size:21 final size:19
Alignment explanation
Indices: 89047081--89047134 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 19
89047071 ATATCAATTT
89047081 AAAA-TATAGAAAATTATTA
1 AAAATTATAGAAAA-TATTA
89047100 AAAATTATAAGAAAATATTA
1 AAAATTAT-AGAAAATATTA
89047120 AAATATTATTAGAAA
1 AAA-ATTA-TAGAAA
89047135 CAATAAGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.13
20 11 0.35
21 15 0.48
22 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (19 bp):
AAAATTATAGAAAATATTA
Found at i:89047571 original size:31 final size:31
Alignment explanation
Indices: 89047529--89047604 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
89047519 TTAAATGAAG
*
89047529 ATTAATTTTTTAAATATTTTTATTAATT-TTA
1 ATTAATATTTTAAATATTTTTA-TAATTCTTA
* *
89047560 ATTAATATTTTAGAGTTTTTTTATAATTCTTA
1 ATTAATATTTTA-AATATTTTTATAATTCTTA
89047592 A-T-A-ATTTTAAATA
1 ATTAATATTTTAAATA
89047605 ACTTTCTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 2 0.05
29 6 0.16
30 1 0.03
31 17 0.45
32 12 0.32
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (31 bp):
ATTAATATTTTAAATATTTTTATAATTCTTA
Found at i:89047770 original size:19 final size:20
Alignment explanation
Indices: 89047738--89047776 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
89047728 AAATCATTAT
*
89047738 AAAAATTTTGTTTTTTAAAA
1 AAAAATTATGTTTTTTAAAA
89047758 AAAAATTAT-TTTTTTAAAA
1 AAAAATTATGTTTTTTAAAA
89047777 TATTCATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
AAAAATTATGTTTTTTAAAA
Found at i:89069071 original size:18 final size:18
Alignment explanation
Indices: 89069033--89069071 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
89069023 TTTATTGAAA
* * *
89069033 TTTATTTTTATTTCTATT
1 TTTATTTTAATTACTAAT
89069051 TTTATTTTAATTACTAAT
1 TTTATTTTAATTACTAAT
89069069 TTT
1 TTT
89069072 TCTTTTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTAATTACTAAT
Found at i:89072890 original size:6 final size:6
Alignment explanation
Indices: 89072817--89072897 Score: 56
Period size: 6 Copynumber: 13.3 Consensus size: 6
89072807 TGAGTCCGAC
* * * * *
89072817 TATTTT TATGTT TATGTT TATCTT TATTTTT TAGCTTT TA-CTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TA-TTTT TA-TTTT TATTTT TATTTT
* * * *
89072866 TATTTT CACTTT TATTTT TCTTTT TATGTT TA
1 TATTTT TATTTT TATTTT TATTTT TATTTT TA
89072898 CTTTGCTTTC
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
5 4 0.07
6 45 0.76
7 10 0.17
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (6 bp):
TATTTT
Found at i:89076591 original size:4 final size:5
Alignment explanation
Indices: 89076552--89076590 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
89076542 CCATTTTCTC
* *
89076552 TTTTA TGTTA TTTCA TATTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTT
89076591 ACTTCTTCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:89082323 original size:15 final size:15
Alignment explanation
Indices: 89082299--89082328 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89082289 TATATGTTAG
89082299 TAATAAAAATAATGA
1 TAATAAAAATAATGA
*
89082314 TAATACAAATAATGA
1 TAATAAAAATAATGA
89082329 ATGATTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (15 bp):
TAATAAAAATAATGA
Found at i:89084389 original size:89 final size:88
Alignment explanation
Indices: 89084224--89084437 Score: 238
Period size: 89 Copynumber: 2.4 Consensus size: 88
89084214 CAAGGAGAAG
* * * *
89084224 AGATTTGT-AATTTCCAGCCTGTGACCCTATTGCTCAGGGGTTTAAGGCCCATCACTTCTGCTAT
1 AGATTTGTCAATTT-CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACTTCTGATAT
* *
89084288 GCTTCCCTACTGCTTAGGGGGTTA
65 GCTTCCCTACTGCTTAGGGAGATA
* *** *
89084312 AGATTTGTCAATCTTCAGCCTGTTACCCTACTGTTTAGGGGTTTAAGGCTTGTCACCTT-TGATC
1 AGATTTGTCAAT-TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCA-CTTCTGATA
*
89084376 TGTTTCCCTACTGCTTAGGGAGATA
64 TGCTTCCCTACTGCTTAGGGAGATA
* * *
89084401 AGATTTG-CAATTT-GGTCTGTTACTCTACTGCTTAGGG
1 AGATTTGTCAATTTCAGCCTGTTACCCTACTGCTTAGGG
89084438 AAATAATATC
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
86 20 0.19
87 2 0.02
88 12 0.11
89 68 0.64
90 5 0.05
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (88 bp):
AGATTTGTCAATTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACTTCTGATATG
CTTCCCTACTGCTTAGGGAGATA
Found at i:89084432 original size:42 final size:42
Alignment explanation
Indices: 89084369--89084651 Score: 263
Period size: 42 Copynumber: 6.6 Consensus size: 42
89084359 GCTTGTCACC
* * *
89084369 TTTGATCTGTTTCCCTACTGCTTAGGGAGATAAGATTTGCAA
1 TTTGGTCTGTTACCCTACTGCTTAGGGAGATAAGATCTGCAA
* * *
89084411 TTTGGTCTGTTACTCTACTGCTTAGGGAAATAATATCTGCAA
1 TTTGGTCTGTTACCCTACTGCTTAGGGAGATAAGATCTGCAA
* * * *
89084453 TTTGGTCTGTTACCCTACTGCTTAGGG-GTTTAAGACCCTTC-G
1 TTTGGTCTGTTACCCTACTGCTTAGGGAG-ATAAGA-TCTGCAA
* **
89084495 TCTTCGATCTACT-CCACTACTGCTTAGGGAGATAAGATCTGCAA
1 T-TT-GGTCTGTTACC-CTACTGCTTAGGGAGATAAGATCTGCAA
* * *
89084539 TTTGGTCTGTTACCCTACTGCTTAGGG-GTTTAAGACCCTTC-A
1 TTTGGTCTGTTACCCTACTGCTTAGGGAG-ATAAGA-TCTGCAA
* *
89084581 TCTTCGATCTGCT-CCACTACTGCTTAGGGAGATAAGATCTGCAA
1 T-TT-GGTCTGTTACC-CTACTGCTTAGGGAGATAAGATCTGCAA
*
89084625 TTCGGTCTGTTACCCTACTGCTTAGGG
1 TTTGGTCTGTTACCCTACTGCTTAGGG
89084652 GTTTAAGACC
Statistics
Matches: 191, Mismatches: 34, Indels: 32
0.74 0.13 0.12
Matches are distributed among these distances:
41 1 0.01
42 111 0.58
43 27 0.14
44 50 0.26
45 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (42 bp):
TTTGGTCTGTTACCCTACTGCTTAGGGAGATAAGATCTGCAA
Found at i:89084531 original size:44 final size:44
Alignment explanation
Indices: 89084467--89084696 Score: 201
Period size: 44 Copynumber: 5.3 Consensus size: 44
89084457 GTCTGTTACC
* * *
89084467 CTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTACTCCA
1 CTACTGCTTAGGGGTATAAGACCCTTCATCTTCGATCTGCTCCA
* * * *
89084511 CTACTGCTTAGGGAG-ATAAGA-TCTGCAAT-TT-GGTCTGTTACC-
1 CTACTGCTTAGGG-GTATAAGACCCTTC-ATCTTCGATCTGCT-CCA
*
89084553 CTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGTATAAGACCCTTCATCTTCGATCTGCTCCA
* * * * *
89084597 CTACTGCTTAGGGAG-ATAAGA-TCTGCA-ATTCGGTCTGTTACC-
1 CTACTGCTTAGGG-GTATAAGACCCTTCATCTTCGATCTGCT-CCA
* *
89084639 CTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTTCC-
1 CTACTGCTTAGGGGTATAAGACCCTTCATCTTCGATCTG-CTCCA
89084683 CTACTGCTTAGGGG
1 CTACTGCTTAGGGG
89084697 GTTAAGGCTT
Statistics
Matches: 149, Mismatches: 23, Indels: 28
0.75 0.12 0.14
Matches are distributed among these distances:
41 2 0.01
42 52 0.35
43 24 0.16
44 67 0.45
45 4 0.03
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGGTATAAGACCCTTCATCTTCGATCTGCTCCA
Found at i:89084542 original size:86 final size:86
Alignment explanation
Indices: 89084425--89084695 Score: 463
Period size: 86 Copynumber: 3.2 Consensus size: 86
89084415 GTCTGTTACT
* *
89084425 CTACTGCTTAGGGAAATAATATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACC
1 CTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACC
*
89084490 CTTCGTCTTCGATCTACTCCA
66 CTTCATCTTCGATCTACTCCA
89084511 CTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACC
1 CTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACC
*
89084576 CTTCATCTTCGATCTGCTCCA
66 CTTCATCTTCGATCTACTCCA
*
89084597 CTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACC
1 CTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACC
**
89084662 CTTCATCTTCGATCTGTTTCC-
66 CTTCATCTTCGATCT-ACTCCA
89084683 CTACTGCTTAGGG
1 CTACTGCTTAGGG
89084696 GGTTAAGGCT
Statistics
Matches: 177, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
86 174 0.98
87 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (86 bp):
CTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACC
CTTCATCTTCGATCTACTCCA
Found at i:89084559 original size:128 final size:128
Alignment explanation
Indices: 89084331--89084565 Score: 348
Period size: 128 Copynumber: 1.8 Consensus size: 128
89084321 AATCTTCAGC
* * * * **
89084331 CTGTTACCCTACTGTTTAGGGGTTTAAGGCTTGTCACCTTTGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGCCCTGTCACCTTCGATCTGACTCCCTACTGCTTAGGG
* *
89084396 AGATAAGATTTGCAATTTGGTCTGTTACTCTACTGCTTAGGGAAATAATATCTGCAATTTGGT
66 AGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGAAATAATATCTGCAATTTGGT
**
89084459 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCT-ACTCCACTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAG-CCCTGTCACCTTCGATCTGACTCC-CTACTGCTTAG
89084522 GGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGG
64 GGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGG
89084566 GTTTAAGACC
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
127 3 0.03
128 90 0.95
129 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (128 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGCCCTGTCACCTTCGATCTGACTCCCTACTGCTTAGGG
AGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGAAATAATATCTGCAATTTGGT
Found at i:89084643 original size:128 final size:127
Alignment explanation
Indices: 89084372--89084651 Score: 291
Period size: 128 Copynumber: 2.2 Consensus size: 127
89084362 TGTCACCTTT
* *
89084372 GATCTGTTTCCCTACTGCTTAGGGAGATAAGATTTGCAATTTGGTCTGTTACTCTACTGCTTAGG
1 GATCTG-TTCCCTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGG
* * * * * * **
89084437 GAAATAATATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTC
65 GAAATAAGACCTGCAATTTGATCTGCTACCCTACTGCTTAGGGGTATAAGACCCTGCGAATTC
**
89084500 GATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGG
1 GATCTGTTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGG
*** * *
89084565 GGTTTAAGACCCTTC-ATCTTCGATCTGCT-CCACTACTGCTTAGGGAG-ATAAGA-TCTGC-AA
65 GAAATAAGA-CCTGCAAT-TT-GATCTGCTACC-CTACTGCTTAGGG-GTATAAGACCCTGCGAA
89084625 TTC
125 TTC
*
89084628 GGTCTGTTACCCTACTGCTTAGGG
1 GATCTGTT-CCCTACTGCTTAGGG
89084652 GTTTAAGACC
Statistics
Matches: 125, Mismatches: 20, Indels: 14
0.79 0.13 0.09
Matches are distributed among these distances:
127 3 0.02
128 85 0.68
129 12 0.10
130 24 0.19
131 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (127 bp):
GATCTGTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGG
AAATAAGACCTGCAATTTGATCTGCTACCCTACTGCTTAGGGGTATAAGACCCTGCGAATTC
Found at i:89084702 original size:44 final size:44
Alignment explanation
Indices: 89084292--89084702 Score: 244
Period size: 42 Copynumber: 9.5 Consensus size: 44
89084282 TGCTATGCTT
** *
89084292 CCCTACTGCTTAGGGGGTTAAGA-TTTGTCAATCTTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCCT-TC-ATCTTCGA-TCTGTTA
* * * * * * *
89084337 CCCTACTGTTTAGGGGTTTAAG-GCTTGTCACCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGACCCT-TCATCTTCGATCTGTTA
* * * *
89084381 CCCTACTGCTTAGGGAGATAAGA--TTTGCAAT-TT-GGTCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCCTT-C-ATCTTCGATCTGTTA
* *** * * * *
89084423 CTCTACTGCTTAGGGAAATAATA-TCTGCAAT-TT-GGTCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCCTTC-ATCTTCGATCTGTTA
* * **
89084465 CCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTACT-
1 CCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTA
* * * * *
89084508 CCACTACTGCTTAGGGAGATAAGA-TCTGCAAT-TT-GGTCTGTTA
1 CC-CTACTGCTTAGGGGGTTAAGACCCTTC-ATCTTCGATCTGTTA
* *
89084551 CCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGCT-
1 CCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTA
* * * * * *
89084594 CCACTACTGCTTAGGGAGATAAGA-TCTGCA-ATTCGGTCTGTTA
1 CC-CTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTA
* *
89084637 CCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTA
89084681 CCCTACTGCTTAGGGGGTTAAG
1 CCCTACTGCTTAGGGGGTTAAG
89084703 GCTTGTGAAT
Statistics
Matches: 284, Mismatches: 63, Indels: 39
0.74 0.16 0.10
Matches are distributed among these distances:
42 114 0.40
43 37 0.13
44 107 0.38
45 26 0.09
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGACCCTTCATCTTCGATCTGTTA
Found at i:89102871 original size:20 final size:20
Alignment explanation
Indices: 89102846--89102885 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
89102836 AGACAATGTG
89102846 CTAAACACATAATTCTAGTA
1 CTAAACACATAATTCTAGTA
89102866 CTAAACACATAATTCTAGTA
1 CTAAACACATAATTCTAGTA
89102886 TGATGTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (20 bp):
CTAAACACATAATTCTAGTA
Found at i:89103885 original size:33 final size:34
Alignment explanation
Indices: 89103838--89103908 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
89103828 TAAAGTGAAC
89103838 TACTCAGTCTAATACTAA-CAACCTAGAATCAAA
1 TACTCAGTCTAATACTAAGCAACCTAGAATCAAA
* *
89103871 TACTTAGTCTAATACTAAGCAACCTAGAATCAAT
1 TACTCAGTCTAATACTAAGCAACCTAGAATCAAA
89103905 TACT
1 TACT
89103909 ATCGAACTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 17 0.49
34 18 0.51
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (34 bp):
TACTCAGTCTAATACTAAGCAACCTAGAATCAAA
Found at i:89105542 original size:20 final size:20
Alignment explanation
Indices: 89105442--89105547 Score: 74
Period size: 20 Copynumber: 5.3 Consensus size: 20
89105432 AGGCACCAGA
* *
89105442 TGCAAACAGAGACAC-GATTG
1 TGCAAACAGAGGCACTGA-AG
* * *
89105462 TGCAAGCAGAGGCACCGTAG
1 TGCAAACAGAGGCACTGAAG
89105482 TGCAAACAG-GGACACTGAAG
1 TGCAAACAGAGG-CACTGAAG
* * ** *
89105502 TGTATATGGAGGCA-TATAAG
1 TGCAAACAGAGGCACT-GAAG
89105522 TGCAAACAGAGGCACTGAAG
1 TGCAAACAGAGGCACTGAAG
89105542 TGCAAA
1 TGCAAA
89105548 TCTTGTATAA
Statistics
Matches: 64, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
19 3 0.05
20 57 0.89
21 4 0.06
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.15
Consensus pattern (20 bp):
TGCAAACAGAGGCACTGAAG
Found at i:89116022 original size:28 final size:28
Alignment explanation
Indices: 89115990--89116091 Score: 141
Period size: 28 Copynumber: 3.6 Consensus size: 28
89115980 CAAATATGGT
* *
89115990 ACTTAGTGTATGAAATATTGAGAATGGC
1 ACTTAGTGTACGAAATATTGAGAATGAC
*
89116018 ACTTAGTGTACGAAATATTGAGAATGAA
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
89116046 ACTTAGTGTGCGAGATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
89116074 ACTTAGTGTGCAAAATAT
1 ACTTAGTGTACGAAATAT
89116092 CGAATGATTC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:89118104 original size:29 final size:29
Alignment explanation
Indices: 89118072--89118204 Score: 169
Period size: 29 Copynumber: 4.6 Consensus size: 29
89118062 AAGTGAACAT
89118072 AGGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* * * ****
89118101 AGGCACTGTGTATGCGAGTTCCG-TAACC
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* *
89118129 AAGCACTGTATGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
*
89118158 AGGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
89118187 AGGCACTGTGTGTGCGAG
1 AGGCACTGTGTGTGCGAG
89118205 TTCCATAACC
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 19 0.23
29 65 0.77
ACGTcount: A:0.18, C:0.17, G:0.37, T:0.29
Consensus pattern (29 bp):
AGGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:89118197 original size:86 final size:86
Alignment explanation
Indices: 89118072--89118259 Score: 295
Period size: 86 Copynumber: 2.2 Consensus size: 86
89118062 AAGTGAACAT
* *
89118072 AGGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTATGCGAGTTCCGTAACCAAGCACTG
1 AGGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTATGCGAGTTCCATAACCAAGCACTG
*
89118137 TATGTGCGAGATCGGTTGTTG
66 TATGTGCAAGATCGGTTGTTG
*
89118158 AGGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACCAAGCACTG
1 AGGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTATGCGAGTTCCATAACCAAGCACTG
* *
89118223 TGTGTGCAAGATCGGTTTTTG
66 TATGTGCAAGATCGGTTGTTG
*
89118244 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
89118260 AAATGAGATC
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
86 86 0.92
88 7 0.08
ACGTcount: A:0.19, C:0.17, G:0.35, T:0.29
Consensus pattern (86 bp):
AGGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTGTGTATGCGAGTTCCATAACCAAGCACTG
TATGTGCAAGATCGGTTGTTG
Found at i:89126069 original size:991 final size:988
Alignment explanation
Indices: 89122135--89126716 Score: 6532
Period size: 989 Copynumber: 4.7 Consensus size: 988
89122125 CTATATGGAC
* * *
89122135 TACTTAAACATGATTAGAAGAACGAGTTTATGTTTTTGAACTATTTTGAAACTTAAAAATGAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* *
89122200 TAAACCATTCTGTCACAGTGAATGATAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
66 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
* * * *
89122265 ATCAATTGTCTGTACTTAAGTAAACTTAGTTGTATTTTAGGATATTATTTTAGCATTTTTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
* * *
89122330 ATTGCATAAGAAGCTTGGATAATGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGCAG
196 ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
* * **
89122395 GGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAGTGTTTGCT
261 GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGCT
* * * * *
89122460 GGGGCAAAGAGTTGGACATTTTGTCAAAATGGATACTGTGGCAATGTCGAGAAGATTGAGTCAAC
326 GGGGCAAAGAGTTGGACATTTTG-CCAAATTGATGCTGTGGCAATGTCGAGAAGACTGAGTTAAC
* * * * * **
89122525 ACTCAGCGGATGCCAGTTTCAGCCCAAATTTACTTCTACCAGAAAAAA-CAGCCTAAAAAATAAA
390 ACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCA-AAAAAATCCGCCTAAAAAATAGG
* * *
89122589 AGATGATAATATTGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTCTG
454 AGAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTT-TG
* *
89122654 GATTTA-CCTAGGAAAAAGGCTATAAAAAGCCAACTAAGGAAACACTAAACGACGAACAAAAAAG
518 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAAC-AAAAAG
* ** * * * *
89122718 TAGGAGAGATCCTTACACGTGAATAAGGGTTTGGCTACGTAAGAGTAAGAAAGTCGAAGGCAATC
582 TGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGTC
* * * * * * * *
89122783 CTTCTTAGCCATAACAAGATGTTATGCTGCCAAAGTCTGGACTGCGCAAGCGATAGCTGTTTCCC
647 CTTCTTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCC
* * *
89122848 AAAGTTCTTTTATTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGAT-AAGCACAA
712 AAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTCAAGTAGTTGAA-CACAA
* * * * *
89122912 CGTCAGATAATATTTTGGTTTGGAATTTTATTTCTCAACCCATTAGCCAAATATCATAAGGTTGG
776 TGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGG
89122977 GATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTG
841 GATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTG
* * *
89123042 TTTCATTTGATTGTTCTTATTACTTAATAAAAATGGAAATGATCTCTAGACATAAAAGACTGTTC
906 TTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTC
*
89123107 ACATACTTATAAACTGAT
971 GCATACTTATAAACTGAT
* * * *
89123125 TACTTAAACATCATCAGAAGAATGATTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* * * *
89123190 TAAACCGTTCTGTCATAGTGAATGATAACTCTTGAAAATAGTTATAATTCATGCCTGTAGGCTGG
66 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
*
89123255 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTGTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
* *
89123320 TTTGCAAAAGAAGCTTGGAC-GATGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
196 ATTGCATAAGAAGCTTGGACAG-TGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
* *
89123384 GGGCTATGTTTGGTGGTTTGGTAGGTGTAGGATATGGAGAAAGAAACAAAGGAGTAAACGTTTGC
260 GGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGC
* *
89123449 TGGGGCAAAGAGTTAGACATTTTGCCAAATTGGATGTTGTGGCAATGTCGAGAAGACTGAGTTAA
325 TGGGGCAAAGAGTTGGACATTTTGCCAAATT-GATGCTGTGGCAATGTCGAGAAGACTGAGTTAA
* * * * *
89123514 CACTCAACGTATGCTAGTTTCAGTCCAACTTTACTTGTACCAGAAAAATCCGCCTAAAAAATAGT
389 CACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAATCCGCCTAAAAAATAGG
* * *
89123579 AGAAGGTAAT-TTGGGTTATTGAGAAAAGAATTTAAATAGAGGAGAATATAAATATGGGTTTTGG
454 AGAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTT-G
* * *
89123643 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACAGTAAACGACGAACAAAAAGT
518 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAACAAAAAGT
** * *
89123708 GGGAGAGATCCTTAGGCGTGAATAACAGTTTGGCTATGTAAGGGAAAGAAAGTCGAACACAGTCC
583 GGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGTCC
* * * *
89123773 TTCTTAGCCATAACAAGACA---TGTTTCTGAAATGTGGACTGGGCAAGCGAAAGCTGTTTACCA
648 TTCTTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCCA
* * *
89123835 AAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTAAACACAATT
713 AAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTCAAGTAGTTGAACACAATG
* *
89123900 TCGGATAATATTTTGGTTTGGAATTTTATTTCTCAGCCCATGAGCCAAATCTCATAAGGTTGGGA
778 TCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGGGA
89123965 TTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGTT
843 TTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGTT
* *
89124030 TCATTAGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAGAAGACTGTTCGC
908 TCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTCGC
*
89124095 ATACTTATAAATTGAT
973 ATACTTATAAACTGAT
* * *
89124111 TACTTAAACATAATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAACTTAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* *
89124176 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGTTAG
66 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
* *
89124241 GTCAATTGTTTGTATTTAAGTGAACTTAGTTTCATTTTAGGATATTATTTTAGCATTTTTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
* *
89124306 ATTGCGTAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGCTACTTTTAATTTCTTGTGGTAG
196 ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
* ** * *
89124371 GGCTATGGTTGGTGGTTTGGTAGGTGTTGTATATGGAGAAAGAAACAAAGGAGTGAACATTTGCT
261 GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGCT
* ** * * * *
89124436 AGGGTGAATAGTTGGACATTTTGCCAAAATG--GATGTGGCAATGTC-AGGAAGACTAAGTTAAC
326 GGGGCAAAGAGTTGGACATTTTGCCAAATTGATGCTGTGGCAATGTCGA-GAAGACTGAGTTAAC
* * * * * * **
89124498 ACTTAACACAAGCCAGTTTTAGGCCAACTTTACTTGCACCAAAAAAATCTACCTAAAAAATA-GA
390 ACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAATCCGCCTAAAAAATAGGA
* * * * * *
89124562 GAAGATAATCTTAGTTTGTTGAAAAAGGAATTTAAATATAGGAGAAGATAAACATGGGTTTTTGG
455 GAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGG-TTTTGG
*
89124627 ATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACAAAAAACAAAAA
519 ATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGAC---AAACAAAAA
*
89124692 GTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTATGTAAGGGAAAGAAAGTCGAAGACAGT
581 GTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGT
* * * *
89124757 CCTTCTTAGCCATCACAAGATGTTGTGTTTCCGAAGTGTGGACTGGGTAAGCGAAAGCTATTTCC
646 CCTTCTTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCC
* *
89124822 CAAAGTTGTTTTGTTATTTCCATCAGTGTTCCTTCGAAAGATTGAA-TCAAAGTAGTTGAACACA
711 CAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTC-AAGTAGTTGAACACA
* * * * *
89124886 ATTTCAGATAATATTTTGGTTTGGAATTTTATTTTCCAGCCGATGATCTAAATCTCATAAGGTTG
775 ATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTG
* *
89124951 GGATTACTTTCAATCAAACCTTCAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACT
840 GGATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACT
* * * *
89125016 GTTTCATTCGATTGTTCTTATTTCTTAATTAAAATGCAAAAGATCTTTAGACATAGAAGACTGTT
905 GTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTT
*
89125081 CGTATACTTATAAACTGAT
970 CGCATACTTATAAACTGAT
* * *
89125100 TACTTAAATATGACCAGATGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
89125165 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
66 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
* * * * * *
89125230 GTTAATTTTTTGTACTTCAGTGAACTTAGTTGCATTTTAGGATTTTATTTTAGCAGTTTTAGAAT
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
89125295 ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
196 ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
* *
89125360 GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAATCAAAGGAGTGAACATTTGCT
261 GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGCT
*
89125425 GGGGCAAAGAGTTGGACATTTTGCCAAGATTGATGTTGTGGCAATGTC-AGGAAGACTGAGTTAA
326 GGGGCAAAGAGTTGGACATTTTGCCAA-ATTGATGCTGTGGCAATGTCGA-GAAGACTGAGTTAA
* *
89125489 CACTCAATGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAAAT-TGCCTAAAAAATAG
389 CACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACC-AAAAAAATCCGCCTAAAAAATAG
* * * *
89125553 GAGAAGATAATCTTTGGTCATTAAAAAAAGAATTTAAATAGCGGAGAAGATAAATATGGGCTTTT
453 GAGAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGG-TTTT
* * *
89125618 GGGTTTACCCTA-GAAAAAAGGCTATAAAAAGCCAAATAAGGAAACACTAAATGACAAACAATAA
517 GGATTTACCCTAGGAAAAAA-GCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAACAA-AA
* * **
89125682 AGTGGGAGAGATCCTTAGGCGTGACTAAGGGTTTGGCTACATAAGGGAAAGAAAGTTTAAGACAG
580 AGTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAG
** * * *
89125747 TTTTTCTTAGCCATCACAAGATATTGTGTTTTCGAAGTGTGGACAGGGCAAGCGAAAGCTGTTTC
645 TCCTTCTTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTC
* *
89125812 CCAAAGTTGTTTTGTTATTTCCATTAGTGTTCCTTCGAAATATTGAATTCAAGTAGTTGAACACA
710 CCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTCAAGTAGTTGAACACA
* * * * * *
89125877 ATGTCAGATAATATTTTGGTTTCGAATTTTGTTTCCCAGCCTATGATCCAAATCTGATAAGGTTA
775 ATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTG
*
89125942 GGATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTATT
840 GGATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACT
* *
89126007 ATTTCATTTGGTTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTT
905 GTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTT
* *
89126072 TGCATACTTATAAAATGAT
970 CGCATACTTATAAACTGAT
* *
89126091 TACTTAAACATGATCTGAAGAATGGGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* * *
89126156 TAAACCATTCTG-CAATAATGAATGACAACTCTTGAAAAGAGTTATAATTCATGCCTCTAGGCTG
66 TAAACCATTCTGTC-ATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTG
* *
89126220 GGTCAATTGTCTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAA
130 GGTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAA
* * * *
89126285 CATTGCATACGAA-CATTGGATAGCGCTTAAATATTTTTATTTGTTACTTTTAATTTCTTGTGGT
195 CATTGCATAAGAAGC-TTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGT
* *
89126349 AGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTG
259 AGGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTG
* * * * *
89126414 CTGGGG-AAAGAGTTGGAGATTTTTTCAAAATGGATGCTGTGGCAATGTCGAGAAGACTGA-TAA
324 CTGGGGCAAAGAGTTGGACA-TTTTGCCAAATTGATGCTGTGGCAATGTCGAGAAGACTGAGTTA
* * * *
89126477 ACACTCAACGCTTGCCAATTTCAGCCCAACTATACTTGTACCAAAAAAATCCGTCTAAAAAATAG
388 ACACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAATCCGCCTAAAAAATAG
* * * *
89126542 GTGAAGATATTATTGGG---TT-------G----T---TA-AGGAGAAGATAAACATGGGTTTCT
453 GAGAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTT-T
* * * * * *
89126589 GAATTTACCCTTGGAGAAAAGCTATAAAAAGCCAACTGAGGAATCACTAAACGACGAACAAAGAA
517 GGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAACAAA-AA
* *
89126654 GTGGGAGAGATCCTTAGGC-----TAAGGGTTTGGCTACATAAGGGAAAGAAAGTCGAAGGCAGT
581 GTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGT
89126714 CCT
646 CCT
89126717 AACCGGTATC
Statistics
Matches: 3246, Mismatches: 313, Indels: 90
0.89 0.09 0.02
Matches are distributed among these distances:
966 39 0.01
970 4 0.00
971 84 0.03
972 8 0.00
975 1 0.00
979 1 0.00
982 10 0.00
983 172 0.05
984 4 0.00
985 1 0.00
986 705 0.22
987 3 0.00
988 10 0.00
989 828 0.26
990 503 0.15
991 684 0.21
992 83 0.03
993 106 0.03
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (988 bp):
TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGCT
GGGGCAAAGAGTTGGACATTTTGCCAAATTGATGCTGTGGCAATGTCGAGAAGACTGAGTTAACA
CTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAATCCGCCTAAAAAATAGGAG
AAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTTGGAT
TTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAACAAAAAGTGGG
AGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGTCCTTC
TTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCCAAAG
TTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTCAAGTAGTTGAACACAATGTCA
GATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGGGATTA
CTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGTTTCA
TTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTCGCATA
CTTATAAACTGAT
Found at i:89132137 original size:15 final size:15
Alignment explanation
Indices: 89132114--89132144 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
89132104 TCAAAAATTC
89132114 CAATACAAAACATAT
1 CAATACAAAACATAT
*
89132129 CAATCCAAAACATAT
1 CAATACAAAACATAT
89132144 C
1 C
89132145 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:89132681 original size:14 final size:15
Alignment explanation
Indices: 89132664--89132692 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
89132654 TCACGAAAAT
89132664 TTCACACAT-ATAAA
1 TTCACACATAATAAA
89132678 TTCACACATAATAAA
1 TTCACACATAATAAA
89132693 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:89136729 original size:989 final size:991
Alignment explanation
Indices: 89133347--89138858 Score: 8800
Period size: 989 Copynumber: 5.6 Consensus size: 991
89133337 AAATATTAAA
* * * * * * **
89133347 GCTACAAAAAGCTAACTGAAGAAACACTAAATGATGAACAAAAAAGTGGGAGAGAT-CCTA-A-G
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
* * * ** * * *
89133409 -G-CTAAGGGTTTGGCTATGTAAGG-AAAGAAAGTTGAAGGAAATCCTTCTTAGCCATTACAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
* * * * * * * * * *
89133471 TGTTGTGCTGCCG-AG-TTG---TGGGCAAGCAAAAGCTGGTTCCCAAAGTTATTTTGTTATTTT
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
* * * * **
89133531 CATTAGTGTTGCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGCCAGACAAAATCCTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
* * * * * * * *
89133596 TAGAATTTTATTTCCCAGCCTATTAGCCAAATCTCATAAGGTTAGAAGTACTTTCAATGAAACTT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
* * * * * * *
89133661 TAAACTATCTTTATGGATGTAGTATATATCTAATTTACTTTACAATTTCATTTGATTGTTCTTAT
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
* * * * * * *
89133726 TTTTTAATTAAAATGCAAATGATCTCTAGACATAGAAGACTATTCGCATACTTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
* *
89133791 CTTAAACATGATCAGAAGAATGATTTTATGTTTTTGAACTATTTTGGAGCTTAAAAATG-AAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT-
* * * * *
89133855 AAAT-ATTCTGTCATAGTGAATGATAATTCCTGAAAAGAGTTATAATTCATGCCTTTAGGCTGGG
520 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
* * * * * * *
89133919 TCAATTTTCTGTACATAAGTGAACTTAGTTGCATTTTAGGATA-TTATTATAGTACTTTTAGAAA
585 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATT-TAGCACTTTTAGAAC
* * *
89133983 ATTGCATAAGAAGATTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
649 ATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
* * * * *
89134048 AGCTGTGTTTGGTGGT-TAGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTGC
714 GGCTGTGTTTGGTGGTCT-GGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTAC
** * * * *
89134112 TGGGGCAAAGAGTTGGATGTTTTGCGAAAATGGATGCTT-TGGCAATGTAGGGAAGACTGAGTTA
778 TGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATG-TTGTGGCAATGTCGGAAAGACTGATTTA
* * * * **
89134176 ACACTCAGCGCATG-CAGTTTCAGCCCAACTTCACCTGTT-CCAGAAAAA-TCCGCCTAAAAAAT
842 ACACTCAACGCATGCCAATTTCAGCCCAACTTTA-CTTTTACCA-AAAAAGTTTGCCTAAAAAAT
* * * * * *
89134238 AGGAGAAGAAAATATTGGGTTG-TTGAAAAAAGAATTTAAATAGAGGAGATGGTAAACATGGTTT
905 AGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAT-AACATGGGTT
* * *
89134302 TTG-GATTTACTCTAGGAAAAAA
969 TTGCGATTTACCCTATGAAAAAT
* * * *
89134324 GCTATAAAAAGCCAACTAAGGAAACACTAAATGACGAA-AAAAAAGTGGGAGATATCG-TTAGGA
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGAT-GTTTA-GA
* * * ** * * * *
89134387 -GTGAATAAGGGTATGGCTACGTAAGGGAAAGAAAGTTGAATGCAGTCCTTCTTAGCAATAACAA
64 CGTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* * * * * * * *
89134451 GATGCT-GTGCTGCCGAAGTGTGGATTGGGCAAGCGAAAATTGTTTCCCAAAGTTCTTTTGATAT
129 GATG-TAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGT
* * * *
89134515 TTCCATTAATGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACATAATTTCAGATAATATTTTG
193 TTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTG
* * * * *
89134580 GTTTGGAATTTTATTTCCCAATCC-ATGCGCCAAATCTCAGAAGGTTGGGATTACTTTCAATG--
258 GTTTGGAATTTTATTTCCC-AGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAA
* * * * *
89134642 ----------A-----A-GGATGAAGTATATATCTAATTTACTTTACTGTTTCATTTGATTGTTC
322 ACCTTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTC
* *
89134691 TTATTTCTTAATTAGAATGCAAATGATATTTACACATAGAAGACTGTTCACAT-ATTACAAACTG
387 TTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTG
* *
89134755 ATTACTTAAACATGATCAGAAGAATAAGTTTATGTTTTGGAACTATTTTGAAGCTTAAAAATGAA
452 ATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAA
89134820 AATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
517 AATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
* * *
89134885 AGGTCAATTGTCTGCACTTAAGTGAGCATAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGA
582 GGGTCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGA
*
89134950 ACATTGTACAAGAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTTCTTGTGGT
647 ACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGT
* * *
89135015 AGGGCTGTGTTTGGTTGTCTGCTTGGTGTAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTA
712 AGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTA
*
89135080 CTGGGGCAAAGAGTTGGACATTTTGCGAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTA
777 CTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTA
*
89135145 ACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACAAAAAAAGTTTGCCTAAAAAATAG
842 ACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTTTGCCTAAAAAATAG
* * *
89135210 GAGAAGACAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAAAGACAAGGGTTTT
907 GAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATA-ACATGGGTTTT
*
89135275 GCGATTTACCCTACGAAAAAT
971 GCGATTTACCCTATGAAAAAT
*
89135296 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACCAAAAAAGTGGGAGACATGTTTAGAC
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAA-CAAAAAAGTGGGAGAGATGTTTAGAC
* *
89135361 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTAAAAGGCATCCCTTCTTAGCCATCACAAG
65 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
*
89135426 ATGAAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
130 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
89135491 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
195 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
89135556 TTGGAATTTTATTTCCCAGCCTATGAGT-AAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
260 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
89135620 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTT-
325 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTA
*
89135684 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGCTCACATAATTATAAACTGATT
390 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
*
89135749 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTGGAAGCTTAAAAATGAAAAT
455 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
89135814 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
520 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
* *
89135879 TCAATTGTCTGCACTTAAGTGAACTTAGTGGCAGTTTAGGATACTAATTTAGCACTTTTAGAACA
585 TCAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
*
89135944 TTGTACAAGAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTT-TTGTGGTAGG
650 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGG
* *
89136008 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAATGTTTACTA
715 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTG
*
89136073 GGGCAAAGAGTTGGACATTTTGCCAAAATTGATGTTGTGGCAATGTCGGAAAGACTGATTTAACA
780 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACA
*
89136138 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAACAGTTTGCCT-AAAAATAGGAG
845 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTTTGCCTAAAAAATAGGAG
89136202 AAGATAATATTGGGTTGTTTTAAAAATAGAATTTAAATTGAGGAGAAGATAACATGGGTTTTGCG
910 AAGATAATATTGGGTTGTTTTAAAAA-AGAATTTAAATTGAGGAGAAGATAACATGGGTTTTGCG
89136267 ATTTACCCTATGAAAAAT
974 ATTTACCCTATGAAAAAT
*
89136285 TCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
89136350 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
89136415 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
89136480 CATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
* *
89136545 TGGAATTTTATTTCTCAGCCTATGAGTAAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
*
89136610 TCAACAATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTT-T
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
89136674 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
89136739 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
89136804 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
521 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
*
89136869 CAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
586 CAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
89136934 TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTT-TTGTGGTAGGG
651 TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGG
*
89136998 CTGTGTTTAGTGGTCTGGTTGGTGCAGGATTT-GAAAAAGAAACAAAGGAGTGAACGTTTACTGG
716 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
*
89137062 GGCAAAGAGTTGGACATTTTTCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
781 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
* *
89137127 TCAACGCATGCCAATTTCTGCCCAACTTTACTTTTACCAAAACAG-TTGCCT-AAAAATAGGAGA
846 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTTTGCCTAAAAAATAGGAGA
89137190 AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAACATGGGTTTTGCGAT
911 AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAACATGGGTTTTGCGAT
89137255 TTACCCTATGAAAAAT
976 TTACCCTATGAAAAAT
*
89137271 TCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
89137336 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
* *
89137401 TGTAGTGTTGCCGAAGTGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
89137466 CATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
89137531 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
*
89137596 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTCCATTTGATTGTTCTTAT
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
*
89137661 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGATCACATAATTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
89137726 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
* * *
89137791 AATTATTTTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGTTGGGT
521 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
89137856 CAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
586 CAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
*
89137921 TGTACAAGAAGATTGGATAGTGCTTAAATACTATTATTTGTTACTTTTAATTTCTTGTGGTAGGG
651 TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGG
89137986 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
716 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
89138051 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
781 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
*
89138116 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGA
846 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTTTGCCTAAAAAATAGGAGA
*
89138181 ATATAATATTGGGTTG-TTT-AAAAAGAATTTAAATTGAGGAGAAGATAACATGGGTTTTGCGAT
911 AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAACATGGGTTTTGCGAT
89138244 TTACCCTATGAAAAAT
976 TTACCCTATGAAAAAT
89138260 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
89138325 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
89138390 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
89138455 CATTAGTGTTCCTTC-AAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
89138519 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
* *
89138584 TCAACTATTTGTATGAATGCAGTGTATATGGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
89138649 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
* *
89138714 CTTAAACATGATCAAAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAA-GGAAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
* *
89138778 AATCATTCTGTCATAGTGAATGATTAATCTTGAAAAGTGTTATAATTCTTGCCTTTTGGCTGGGT
521 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
89138843 CAATTGTCTGCACTTA
586 CAATTGTCTGCACTTA
89138859 TGTAACGCTC
Statistics
Matches: 4259, Mismatches: 219, Indels: 104
0.93 0.05 0.02
Matches are distributed among these distances:
968 74 0.02
969 391 0.09
970 59 0.01
971 36 0.01
972 51 0.01
973 35 0.01
974 211 0.05
975 1 0.00
976 16 0.00
977 35 0.01
979 2 0.00
980 1 0.00
981 19 0.00
982 45 0.01
983 3 0.00
984 2 0.00
985 1 0.00
986 438 0.10
987 570 0.13
988 722 0.17
989 958 0.22
990 264 0.06
991 325 0.08
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.34
Consensus pattern (991 bp):
GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
CATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
CAATTGTCTGCACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGG
CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTTTGCCTAAAAAATAGGAGA
AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAACATGGGTTTTGCGAT
TTACCCTATGAAAAAT
Found at i:89140617 original size:28 final size:28
Alignment explanation
Indices: 89140577--89140669 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
89140567 ATGTACTAGA
89140577 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
89140605 ATACCCCTATGTACGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
89140633 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
89140661 ATACCCCTA
1 ATACCCCTA
89140670 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:89140833 original size:27 final size:28
Alignment explanation
Indices: 89140775--89140889 Score: 119
Period size: 27 Copynumber: 4.1 Consensus size: 28
89140765 AGGAAGCGTC
* *
89140775 CTGGTGGCTTTGCCACAAATTATCTAT-T
1 CTGGTGGCTCTGCCACAAA-TATCTGTAT
*
89140803 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAAATATCTGTAT
*
89140830 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-AAATATCTGTAT
* * * *
89140859 CTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTGTAT
89140886 CTGG
1 CTGG
89140890 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 35 0.47
28 26 0.35
29 14 0.19
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATATCTGTAT
Found at i:89140875 original size:29 final size:28
Alignment explanation
Indices: 89140775--89140875 Score: 123
Period size: 28 Copynumber: 3.6 Consensus size: 28
89140765 AGGAAGCGTC
* * *
89140775 CTGGTGGCTTTGCCACAAATTATCTATT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
*
89140803 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
*
89140830 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCACAAAATATCTGT-T
* *
89140859 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
89140876 TTTTCTGTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 23 0.37
28 24 0.39
29 15 0.24
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAAATATCTGTT
Found at i:89140883 original size:55 final size:56
Alignment explanation
Indices: 89140775--89140889 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 56
89140765 AGGAAGCGTC
** * *
89140775 CTGGTGGCTTTGCCACAAATTATCTATTCTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCACTGCCACAAAATATCTATTCTGGTGACTCTGCCACATATATCTGTAT
* * *
89140830 CTGGTGGCACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTAT-TCTGGTGACTCTGCCACATATATCTGTAT
89140886 CTGG
1 CTGG
89140890 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 29 0.57
56 22 0.43
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (56 bp):
CTGGTGGCACTGCCACAAAATATCTATTCTGGTGACTCTGCCACATATATCTGTAT
Found at i:89159836 original size:8 final size:8
Alignment explanation
Indices: 89159823--89159849 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
89159813 AATTAGACTT
89159823 AAATTTTA
1 AAATTTTA
89159831 AAATTTTA
1 AAATTTTA
89159839 AAATTTTA
1 AAATTTTA
89159847 AAA
1 AAA
89159850 ATAGAGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
AAATTTTA
Found at i:89160042 original size:17 final size:17
Alignment explanation
Indices: 89160015--89160056 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
89160005 AAAAGGTATG
* *
89160015 TTTTATTAAA-TTATCT
1 TTTTATAAAATTTAACT
89160031 TTATTATAAAATTTAACT
1 TT-TTATAAAATTTAACT
89160049 TTTTATAA
1 TTTTATAA
89160057 GTTTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 2 0.09
17 13 0.59
18 7 0.32
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTATAAAATTTAACT
Found at i:89167055 original size:34 final size:34
Alignment explanation
Indices: 89167011--89167086 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
89167001 AAAACTGCAT
* * *
89167011 AACTGATACTGATACTGAGATGGGCTAAGGCCTA
1 AACTGTTACTGATACTGAAAGGGGCTAAGGCCTA
*
89167045 AACTGTTACTGATACTGAAAGGGGCTTAGGCCTA
1 AACTGTTACTGATACTGAAAGGGGCTAAGGCCTA
89167079 AGACTGTT
1 A-ACTGTT
89167087 TGACTGTGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 31 0.84
35 6 0.16
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (34 bp):
AACTGTTACTGATACTGAAAGGGGCTAAGGCCTA
Found at i:89170104 original size:19 final size:20
Alignment explanation
Indices: 89170057--89170105 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
89170047 GACCCCCTTT
* *
89170057 ATTAAACATAAACAATTAAA
1 ATTAAAAATTAACAATTAAA
**
89170077 ATTGCAAATTAAC-ATTAAA
1 ATTAAAAATTAACAATTAAA
89170096 ATTAAAAATT
1 ATTAAAAATT
89170106 TCTTTTAGAT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.31
Consensus pattern (20 bp):
ATTAAAAATTAACAATTAAA
Found at i:89172683 original size:43 final size:43
Alignment explanation
Indices: 89172588--89172706 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 43
89172578 ATCGAGATGT
* * * *
89172588 GATTACATGTAAGACCATGTCTGGAACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
*
89172631 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGA
* * *
89172674 GATTTCGTGTAAGACCTTGTCTGGGACAGTGGC
1 GATTACGTGTAAGACCATGTCTGGGACATTGGC
89172707 GCCAATATGT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 64 0.96
44 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
Found at i:89184857 original size:15 final size:15
Alignment explanation
Indices: 89184837--89184867 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
89184827 AGTTAGACTA
89184837 TGGTCTTTATCCACT
1 TGGTCTTTATCCACT
89184852 TGGTCTTTATCCACT
1 TGGTCTTTATCCACT
89184867 T
1 T
89184868 TTATTTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.48
Consensus pattern (15 bp):
TGGTCTTTATCCACT
Found at i:89190157 original size:28 final size:28
Alignment explanation
Indices: 89190113--89190172 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
89190103 CACCTACAAG
*
89190113 AGGTCTTTATAATGTTGTAAAGGGCCTT
1 AGGTCTTTATAAGGTTGTAAAGGGCCTT
*
89190141 AGGTCTTTATAAGGTTGTAAAGGGGCTT
1 AGGTCTTTATAAGGTTGTAAAGGGCCTT
89190169 AGGT
1 AGGT
89190173 TAAGGGTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.37
Consensus pattern (28 bp):
AGGTCTTTATAAGGTTGTAAAGGGCCTT
Found at i:89190889 original size:20 final size:20
Alignment explanation
Indices: 89190841--89190880 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
89190831 AACTGAAACT
89190841 ACCCTGAATTTGGACGATTA
1 ACCCTGAATTTGGACGATTA
89190861 ACCCTGAATTTGGACGATTA
1 ACCCTGAATTTGGACGATTA
89190881 CTCTAGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (20 bp):
ACCCTGAATTTGGACGATTA
Found at i:89192643 original size:15 final size:17
Alignment explanation
Indices: 89192623--89192661 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
89192613 CAATAATTAT
89192623 AATAATAGTA-T-TAAA
1 AATAATAGTACTGTAAA
*
89192638 AATAATAGTACTGTAAT
1 AATAATAGTACTGTAAA
89192655 AATAATA
1 AATAATA
89192662 AAAATGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.48
16 1 0.05
17 10 0.48
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (17 bp):
AATAATAGTACTGTAAA
Found at i:89193217 original size:8 final size:8
Alignment explanation
Indices: 89193204--89193239 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
89193194 TTTCATTTCG
89193204 TTTTTTTA
1 TTTTTTTA
89193212 TTTTTTTA
1 TTTTTTTA
89193220 -TTTTTTA
1 TTTTTTTA
89193227 TTTTTTTTA
1 -TTTTTTTA
89193236 TTTT
1 TTTT
89193240 CTATTACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 7 0.27
8 12 0.46
9 7 0.27
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTTA
Found at i:89193225 original size:15 final size:15
Alignment explanation
Indices: 89193205--89193244 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
89193195 TTCATTTCGT
89193205 TTTTTTATTTTTTTA
1 TTTTTTATTTTTTTA
89193220 TTTTTTATTTTTTTTA
1 TTTTTTA-TTTTTTTA
*
89193236 TTTTCTATT
1 TTTTTTATT
89193245 ACAAATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTATTTTTTTA
Found at i:89194707 original size:23 final size:25
Alignment explanation
Indices: 89194681--89194738 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
89194671 TTATTTTATG
89194681 TATATTATTTACTTTA-ACATTTT-
1 TATATTATTTACTTTAGACATTTTA
* *
89194704 TATATTATTTATTTTAGACCTTTTA
1 TATATTATTTACTTTAGACATTTTA
*
89194729 TATGTTATTT
1 TATATTATTT
89194739 TAAATTGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 15 0.50
24 6 0.20
25 9 0.30
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (25 bp):
TATATTATTTACTTTAGACATTTTA
Found at i:89195436 original size:127 final size:127
Alignment explanation
Indices: 89195201--89195518 Score: 422
Period size: 127 Copynumber: 2.5 Consensus size: 127
89195191 GAAAATTCCT
** * *
89195201 TAAAACGAAGGCAATGTTTGATGTTTGGAAATTCGAGAAATCGTGCCCTACCGTGCTGGGTTTCG
1 TAAAAC-AAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCG
* * *
89195266 ATTTCCCGTTTGTTCAAAATAATCGAATATTCATTTAGAATTTCACTCGTGTTTTCCAAATTC
65 ATTTCCCGTTTATTCAAAATAATCGAATATTCATTTAGAATTTCACTCGTATTTTACAAATTC
* *
89195329 TAAAACAAGGCAATGTTCAAGGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTTCGA
1 TAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
* * * * * * *
89195394 TTTCCGGTTTATTCCAAATAATTGAATGTTCCTTTAGTATTTCACTCGTATTTTATAAATTC
66 TTTCCCGTTTATTCAAAATAATCGAATATTCATTTAGAATTTCACTCGTATTTTACAAATTC
* * ** * *
89195456 TAAAACAAGGCAATG-TCAATGTTTGCAAATTTGAGGAATTATGCCCTATTGTGTTGGGTTTCG
1 TAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCG
89195519 TTTTTCATTG
Statistics
Matches: 166, Mismatches: 24, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
126 40 0.24
127 120 0.72
128 6 0.04
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (127 bp):
TAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
TTTCCCGTTTATTCAAAATAATCGAATATTCATTTAGAATTTCACTCGTATTTTACAAATTC
Done.