Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 272 of 356
Found at i:89200128 original size:46 final size:46
Alignment explanation
Indices: 89200078--89200253 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
89200068 TGGTTGAGCA
*
89200078 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
89200124 TCCGAATTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
89200169 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89200217 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89200254 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:89200234 original size:93 final size:93
Alignment explanation
Indices: 89200075--89200245 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
89200065 GGATGGTTGA
* * *
89200075 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAATTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
89200140 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
* *
89200168 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
89200233 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
89200246 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:89213301 original size:12 final size:12
Alignment explanation
Indices: 89213284--89213308 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
89213274 GGGTGTTATT
89213284 CGGTTAACCGAC
1 CGGTTAACCGAC
89213296 CGGTTAACCGAC
1 CGGTTAACCGAC
89213308 C
1 C
89213309 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:89213482 original size:9 final size:9
Alignment explanation
Indices: 89213468--89213519 Score: 86
Period size: 9 Copynumber: 5.8 Consensus size: 9
89213458 TTTGGTTAAA
89213468 AATTACCCG
1 AATTACCCG
89213477 AATTACCCG
1 AATTACCCG
89213486 AATTACCCG
1 AATTACCCG
*
89213495 AATTAACCG
1 AATTACCCG
*
89213504 AATTAACCG
1 AATTACCCG
89213513 AATTACC
1 AATTACC
89213520 GAAAAATACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:89217047 original size:26 final size:25
Alignment explanation
Indices: 89217000--89217048 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
89216990 ACTTGCATAT
*
89217000 TATTAAAAAATAGTCACTGCATGCA
1 TATTAAAAAATAGTCACAGCATGCA
89217025 TATTAAAAAATAGTCAACAGCATG
1 TATTAAAAAATAGTC-ACAGCATG
89217049 TGACCATCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (25 bp):
TATTAAAAAATAGTCACAGCATGCA
Found at i:89217118 original size:82 final size:80
Alignment explanation
Indices: 89217003--89217428 Score: 485
Period size: 82 Copynumber: 5.4 Consensus size: 80
89216993 TGCATATTAT
89217003 TAAAAAATAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
1 TAAAAAATAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
*
89217068 TCATACACACACACACC
66 TCATACACACACA-A-A
* * * * *
89217085 TAAAAAATAGTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGATCATCCCTACCAACAA
1 TAAAAAATAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
* *
89217150 TCATACATAGACAAA
66 TCATACACACACAAA
* * * *
89217165 TTAAAAA-A--CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAA
1 TAAAAAATAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
*
89217227 TCATACACACACACACC
66 TCATACACACACA-A-A
* * * * *
89217244 TAAAAAATAGTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGATCATCCCTACCAACAA
1 TAAAAAATAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
* *
89217309 TCATACATAGACAAA
66 TCATACACACACAAA
* * * *
89217324 TTAAAAA-A--CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAA
1 TAAAAAATAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
* * * *
89217386 TTATACATAGACAGA
66 TCATACACACACAAA
*
89217401 TTAAAAA-A---ACTGCATGCATATTAAAAAA
1 TAAAAAATAGTCACTGCATGCATATTAAAAAA
89217429 CACGCACTAG
Statistics
Matches: 296, Mismatches: 43, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
76 20 0.07
77 124 0.42
78 1 0.00
79 8 0.03
80 13 0.04
81 2 0.01
82 128 0.43
ACGTcount: A:0.47, C:0.23, G:0.08, T:0.22
Consensus pattern (80 bp):
TAAAAAATAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
TCATACACACACAAA
Found at i:89217223 original size:77 final size:77
Alignment explanation
Indices: 89217014--89217428 Score: 494
Period size: 77 Copynumber: 5.3 Consensus size: 77
89217004 AAAAAATAGT
* * *
89217014 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAATCATACACACA
1 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACTATCCCCACCAACAATCATACATAGA
* *
89217079 CACACCTAAAAAATA
66 CA-A-ATTAAAAA-A
* * * *
89217094 GTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGA-TCATCCCTACCAACAATCATACAT
1 --CACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACT-ATCCCCACCAACAATCATACAT
89217158 AGACAAATTAAAAAA
63 AGACAAATTAAAAAA
* * * *
89217173 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAATCATACACACA
1 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACTATCCCCACCAACAATCATACATAGA
* *
89217238 CACACCTAAAAAATA
66 CA-A-ATTAAAAA-A
* * * *
89217253 GTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGA-TCATCCCTACCAACAATCATACAT
1 --CACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACT-ATCCCCACCAACAATCATACAT
89217317 AGACAAATTAAAAAA
63 AGACAAATTAAAAAA
* * *
89217332 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAATTATACATAGA
1 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACTATCCCCACCAACAATCATACATAGA
*
89217397 CAGATTAAAAAA
66 CAAATTAAAAAA
89217409 -ACTGCATGCATATTAAAAAA
1 CACTGCATGCATATTAAAAAA
89217429 CACGCACTAG
Statistics
Matches: 287, Mismatches: 37, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
76 20 0.07
77 124 0.43
78 3 0.01
79 8 0.03
80 13 0.05
81 3 0.01
82 116 0.40
ACGTcount: A:0.47, C:0.23, G:0.08, T:0.21
Consensus pattern (77 bp):
CACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACTATCCCCACCAACAATCATACATAGA
CAAATTAAAAAA
Found at i:89217409 original size:159 final size:159
Alignment explanation
Indices: 89217014--89217392 Score: 722
Period size: 159 Copynumber: 2.4 Consensus size: 159
89217004 AAAAAATAGT
* * *
89217014 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAATCATACACACA
1 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAATCATACACACA
89217079 CACACCTAAAAAATAGTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGATCATCCCTAC
66 CACACCTAAAAAATAGTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGATCATCCCTAC
89217144 CAACAATCATACATAGACAAATTAAAAAA
131 CAACAATCATACATAGACAAATTAAAAAA
89217173 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAATCATACACACA
1 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAATCATACACACA
89217238 CACACCTAAAAAATAGTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGATCATCCCTAC
66 CACACCTAAAAAATAGTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGATCATCCCTAC
89217303 CAACAATCATACATAGACAAATTAAAAAA
131 CAACAATCATACATAGACAAATTAAAAAA
*
89217332 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAATTATACA
1 CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAATCATACA
89217393 TAGACAGATT
Statistics
Matches: 216, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
159 216 1.00
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (159 bp):
CACTGCATGCATATTAAAAAATAGTCAACAGCATGTAACTAACCCCACCAACAATCATACACACA
CACACCTAAAAAATAGTCATTGCATGCATATTAAAAAATAGTCAACAGTATATGATCATCCCTAC
CAACAATCATACATAGACAAATTAAAAAA
Found at i:89224631 original size:58 final size:57
Alignment explanation
Indices: 89224545--89224665 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 57
89224535 TTGGTTTTTA
* *
89224545 TAATATATATAGTATATATGCATGACTTAAATGAAGC-TAAATGGAATATATATGCAT
1 TAATATATATAGTATATATGCATGACTTAAATAAAGCAAAAAT-GAATATATATGCAT
**
89224602 TAATATATATA-TATATATGCACATGACTTAAATAAAGCAAAAATTTATATATATGCAT
1 TAATATATATAGTATATATG--CATGACTTAAATAAAGCAAAAATGAATATATATGCAT
89224660 TAATAT
1 TAATAT
89224666 TAAATGAAGC
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
56 8 0.14
57 11 0.19
58 34 0.60
59 4 0.07
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.36
Consensus pattern (57 bp):
TAATATATATAGTATATATGCATGACTTAAATAAAGCAAAAATGAATATATATGCAT
Found at i:89224669 original size:36 final size:36
Alignment explanation
Indices: 89224629--89224701 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
89224619 TGCACATGAC
* *
89224629 TTAAATAAAGC-AAAAATTTATATATATGCATTAATA
1 TTAAATAAAGCTAAAAA-GTATACATATGCATTAATA
* *
89224665 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATAAAGCTAAAAAGTATACATATGCATTAATA
89224701 T
1 T
89224702 ATATATATGC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 28 0.88
37 4 0.12
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.34
Consensus pattern (36 bp):
TTAAATAAAGCTAAAAAGTATACATATGCATTAATA
Found at i:89224706 original size:52 final size:51
Alignment explanation
Indices: 89224647--89224907 Score: 131
Period size: 52 Copynumber: 5.2 Consensus size: 51
89224637 AGCAAAAATT
89224647 TATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TATATATATGCATTAATATTAAATGAAGCTAAAC-GTATACATATGCATT-A-A
* * * *
89224701 TATATATATGC-TTGA-CTTAAATGAAGCTAAACCTGCTA-ATA---ATGT--
1 TATATATATGCATTAATATTAAATGAAGCTAAACGT-ATACATATGCAT-TAA
* * * * * *
89224746 TATATACATGCA-TGA-CTTAAATGAAGCTAAATGGAATATATATGCATTAA
1 TATATATATGCATTAATATTAAATGAAGCTAAA-CGTATACATATGCATTAA
* * * * * **
89224796 TATATATATACA-T-ATATATACATATG-TGC-ATGAC-T-TAAATGAAGCAAAACA
1 TATATATATGCATTAATAT-TA-A-ATGAAGCTA-AACGTATACAT-ATGCATTA-A
89224847 TTATATATATGCATTAATATTAAATGAAGCTAAACAGTATACATATGCATTAA
1 -TATATATATGCATTAATATTAAATGAAGCTAAAC-GTATACATATGCATTAA
89224900 TATATATA
1 TATATATA
89224908 AATATATATA
Statistics
Matches: 155, Mismatches: 27, Indels: 52
0.66 0.12 0.22
Matches are distributed among these distances:
45 31 0.20
46 3 0.02
48 3 0.02
49 8 0.05
50 17 0.11
51 11 0.07
52 46 0.30
53 11 0.07
54 21 0.14
55 4 0.03
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.34
Consensus pattern (51 bp):
TATATATATGCATTAATATTAAATGAAGCTAAACGTATACATATGCATTAA
Found at i:89224870 original size:36 final size:36
Alignment explanation
Indices: 89224830--89224902 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
89224820 TGTGCATGAC
* *
89224830 TTAAATGAAGCAAAACATTATATATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
89224866 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
89224902 T
1 T
89224903 ATATAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:89224897 original size:201 final size:204
Alignment explanation
Indices: 89224557--89224987 Score: 611
Period size: 211 Copynumber: 2.1 Consensus size: 204
89224547 ATATATATAG
*
89224557 TATATATGCATGACTTAAATGAAGCTAAATGGAATATATATGC----AT-TA-ATAT--ATATAT
1 TATACATGCATGACTTAAATGAAGCTAAATGGAATATATATGCATTAATATATATATACATATAT
89224614 AT--ATATGCACATGACTTAAATAAAGCAAAAATTTATATATATGCATTAATATTAAATGAAGCT
66 ATACATATGCACATGACTTAAATAAAGCAAAAATTTATATATATGCATTAATATTAAATGAAGCT
89224677 AAACAGTATACATATGC-AT-T-AATATATATATATGCTTGACTTAAATGAAGCTAAACCTGCTA
131 AAACAGTATACATATGCAATATAAATATATATATATGCTTGACTTAAATGAAGCTAAACCTGCTA
*
89224739 ATAATGTTA
196 ATAATGGTA
89224748 TATACATGCATGACTTAAATGAAGCTAAATGGAATATATATGCATTAATATATATATACATATAT
1 TATACATGCATGACTTAAATGAAGCTAAATGGAATATATATGCATTAATATATATATACATATAT
** *
89224813 ATACATATGTGCATGACTTAAATGAAGCAAAACA-TTATATATATGCATTAATATTAAATGAAGC
66 ATACATATGCACATGACTTAAATAAAGCAAAA-ATTTATATATATGCATTAATATTAAATGAAGC
* *
89224877 TAAACAGTATACATATGCATTAATATATATAAATATATATATATGCTTGATTTAAATGAAGTTAA
130 TAAACAGTATACATATGC------A-ATATAAATATATATATATGCTTGACTTAAATGAAGCTAA
89224942 ACCTGCTAATAATGGTA
188 ACCTGCTAATAATGGTA
* *
89224959 TATATATGCATGACTTAAATGAATCTAAA
1 TATACATGCATGACTTAAATGAAGCTAAA
89224988 CCTGCTAATA
Statistics
Matches: 210, Mismatches: 9, Indels: 22
0.87 0.04 0.09
Matches are distributed among these distances:
191 42 0.20
195 2 0.01
196 2 0.01
197 4 0.02
199 8 0.04
201 73 0.35
202 1 0.00
209 2 0.01
210 1 0.00
211 75 0.36
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.35
Consensus pattern (204 bp):
TATACATGCATGACTTAAATGAAGCTAAATGGAATATATATGCATTAATATATATATACATATAT
ATACATATGCACATGACTTAAATAAAGCAAAAATTTATATATATGCATTAATATTAAATGAAGCT
AAACAGTATACATATGCAATATAAATATATATATATGCTTGACTTAAATGAAGCTAAACCTGCTA
ATAATGGTA
Found at i:89224977 original size:45 final size:45
Alignment explanation
Indices: 89224912--89225002 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
89224902 TATATAAATA
* *
89224912 TATATATATGCTTGATTTAAATGAAGT-TAAACCTGCTAATAATGG
1 TATATATATGCATGACTTAAATGAA-TCTAAACCTGCTAATAATGG
89224957 TATATATATGCATGACTTAAATGAATCTAAACCTGCTAATAATGG
1 TATATATATGCATGACTTAAATGAATCTAAACCTGCTAATAATGG
89225002 T
1 T
89225003 TAATTTAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (45 bp):
TATATATATGCATGACTTAAATGAATCTAAACCTGCTAATAATGG
Found at i:89227262 original size:22 final size:23
Alignment explanation
Indices: 89227214--89227327 Score: 108
Period size: 24 Copynumber: 4.8 Consensus size: 23
89227204 AGCTCATTGA
* * *
89227214 AGCTTACCGATTTAGCTCGAA-AT
1 AGCTTACTGTTTTAGCTC-AATAG
89227237 AGCTTACTG-TTTAGCTCAATAG
1 AGCTTACTGTTTTAGCTCAATAG
89227259 AGCTTA-TCGTTTTCAGCTCAATAG
1 AGCTTACT-GTTTT-AGCTCAATAG
* *
89227283 AGCTTACCGTTTTCAGCTCAGTAG
1 AGCTTACTGTTTT-AGCTCAATAG
89227307 AGCTTACTGTTTATCAGCTCA
1 AGCTTACTGTTT-T-AGCTCA
89227328 GAGGAGCTTG
Statistics
Matches: 80, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
21 3 0.04
22 16 0.20
23 11 0.14
24 42 0.52
25 8 0.10
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (23 bp):
AGCTTACTGTTTTAGCTCAATAG
Found at i:89227281 original size:24 final size:23
Alignment explanation
Indices: 89227237--89227327 Score: 114
Period size: 24 Copynumber: 3.8 Consensus size: 23
89227227 AGCTCGAAAT
89227237 AGCTTAC-TGTTT-AGCTCAATAG
1 AGCTTACGT-TTTCAGCTCAATAG
89227259 AGCTTATCGTTTTCAGCTCAATAG
1 AGCTTA-CGTTTTCAGCTCAATAG
*
89227283 AGCTTACCGTTTTCAGCTCAGTAG
1 AGCTTA-CGTTTTCAGCTCAATAG
89227307 AGCTTACTGTTTATCAGCTCA
1 AGCTTAC-GTTT-TCAGCTCA
89227328 GAGGAGCTTG
Statistics
Matches: 62, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
22 6 0.10
23 5 0.08
24 43 0.69
25 8 0.13
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (23 bp):
AGCTTACGTTTTCAGCTCAATAG
Found at i:89229133 original size:12 final size:12
Alignment explanation
Indices: 89229116--89229146 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
89229106 CCACACGCTC
*
89229116 GTGTGCCAGGCA
1 GTGTGCCAAGCA
89229128 GTGTGCCAAGCA
1 GTGTGCCAAGCA
89229140 GTGTGCC
1 GTGTGCC
89229147 CTTTCGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.26, G:0.39, T:0.19
Consensus pattern (12 bp):
GTGTGCCAAGCA
Found at i:89230551 original size:20 final size:20
Alignment explanation
Indices: 89230526--89230579 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
89230516 CATATATATA
89230526 CATATGAATTCAATTCAATT
1 CATATGAATTCAATTCAATT
89230546 CATATGAATTCAATTCAATT
1 CATATGAATTCAATTCAATT
*
89230566 CATATAAATTCAAT
1 CATATGAATTCAAT
89230580 AAATTCATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.39
Consensus pattern (20 bp):
CATATGAATTCAATTCAATT
Found at i:89230575 original size:10 final size:10
Alignment explanation
Indices: 89230515--89230587 Score: 53
Period size: 10 Copynumber: 7.4 Consensus size: 10
89230505 AATCACATTA
*
89230515 TCATATATAT
1 TCATATAAAT
* *
89230525 ACATATGAAT
1 TCATATAAAT
*
89230535 TCA-ATTCAAT
1 TCATA-TAAAT
*
89230545 TCATATGAAT
1 TCATATAAAT
*
89230555 TCA-ATTCAAT
1 TCATA-TAAAT
89230565 TCATATAAAT
1 TCATATAAAT
89230575 TCA-ATAAAT
1 TCATATAAAT
89230584 TCAT
1 TCAT
89230588 CAAATACCGA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
9 11 0.22
10 37 0.74
11 2 0.04
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.40
Consensus pattern (10 bp):
TCATATAAAT
Found at i:89231303 original size:21 final size:21
Alignment explanation
Indices: 89231277--89231326 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
89231267 GGGTTGAACC
89231277 TTCTTTCTCTCTTTC-TTCTTT
1 TTCTTTCTCTCTTTCTTTC-TT
* * *
89231298 TTCTTTTTTTTTTTCTTTCTT
1 TTCTTTCTCTCTTTCTTTCTT
89231319 TTCTTTCT
1 TTCTTTCT
89231327 GTTTCGCATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (21 bp):
TTCTTTCTCTCTTTCTTTCTT
Found at i:89231325 original size:9 final size:9
Alignment explanation
Indices: 89231277--89231331 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
89231267 GGGTTGAACC
89231277 TTCTTTC-T
1 TTCTTTCTT
*
89231285 CTCTTTCTT
1 TTCTTTCTT
89231294 CTT-TTTCTT
1 -TTCTTTCTT
89231303 TT-TTT-TT
1 TTCTTTCTT
89231310 TTCTTTCTT
1 TTCTTTCTT
89231319 TTCTTTCTGT
1 TTCTTTCT-T
89231329 TTC
1 TTC
89231332 GCATGGCTCT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 4 0.10
8 14 0.35
9 17 0.43
10 5 0.12
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (9 bp):
TTCTTTCTT
Found at i:89231461 original size:26 final size:26
Alignment explanation
Indices: 89231410--89231461 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
89231400 TTAAGTAAAC
** *
89231410 ATATTATAATATATATTTTAACTTTA
1 ATATTATAATATATATAATAAATTTA
89231436 ATATTATAATATATATAATAAATTTA
1 ATATTATAATATATATAATAAATTTA
89231462 CACATGTAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
ATATTATAATATATATAATAAATTTA
Found at i:89233438 original size:21 final size:20
Alignment explanation
Indices: 89233414--89233453 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
89233404 ATTTTTTAAG
89233414 TAAATTCTATTATTAATAAAA
1 TAAATTCTATTA-TAATAAAA
*
89233435 TAAATTTTATTATAATAAA
1 TAAATTCTATTATAATAAA
89233454 GTATTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAATTCTATTATAATAAAA
Found at i:89235926 original size:17 final size:17
Alignment explanation
Indices: 89235904--89235937 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
89235894 ATCTAAGTTA
*
89235904 CTCAAATTTAGATATGT
1 CTCAAATATAGATATGT
*
89235921 CTCAAATATAGGTATGT
1 CTCAAATATAGATATGT
89235938 GCCTGAGACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (17 bp):
CTCAAATATAGATATGT
Found at i:89245279 original size:111 final size:113
Alignment explanation
Indices: 89245081--89245308 Score: 327
Period size: 111 Copynumber: 2.0 Consensus size: 113
89245071 TATCAAAAAT
* * ** *
89245081 AAACTGCCATGTCATTTAACTTTTAAAATTATTTTTTAATTGTTGGGGATAAACCTATAATAAAC
1 AAACAGCCATGTCATTTAACCTTTAAAAGCATTTTTTAATTGTCGGGGATAAACCTATAATAAAC
* *
89245146 AACGAACAAGAAAAGTAAAGAAGATTGAACACACAAATTTTACGTAAA
66 AACGAACAAGAAAAGTAAAGAAGATCGAACACACAAATTTTACATAAA
* *
89245194 AAACAGCCATGTCATTTAACCTTTAAAAGCA-TTTTTAATTGTCGGGGATCAA-CTCGT-ATAAA
1 AAACAGCCATGTCATTTAACCTTTAAAAGCATTTTTTAATTGTCGGGGATAAACCT-ATAATAAA
* *
89245256 TAACGAACAAGAAAAGTAAAGAAGATCGAACACACAAATTTTACATGAA
65 CAACGAACAAGAAAAGTAAAGAAGATCGAACACACAAATTTTACATAAA
89245305 AAAC
1 AAAC
89245309 TCCTTCGAAA
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
111 56 0.54
112 20 0.19
113 27 0.26
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.27
Consensus pattern (113 bp):
AAACAGCCATGTCATTTAACCTTTAAAAGCATTTTTTAATTGTCGGGGATAAACCTATAATAAAC
AACGAACAAGAAAAGTAAAGAAGATCGAACACACAAATTTTACATAAA
Found at i:89252440 original size:10 final size:10
Alignment explanation
Indices: 89252409--89252442 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
89252399 TTTAAAAATA
89252409 TTTCCATTTT
1 TTTCCATTTT
89252419 TTT-CATTTT
1 TTTCCATTTT
*
89252428 TTTCCTTTTT
1 TTTCCATTTT
89252438 TTTCC
1 TTTCC
89252443 CAGTTTCCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTCCATTTT
Found at i:89257752 original size:39 final size:39
Alignment explanation
Indices: 89257699--89257797 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
89257689 GGATTTTAGC
* * *
89257699 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
89257738 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
89257777 CCGGATATAATTCCAGCACAT
1 CCGGATATAATTCCAGCACAT
89257798 TGTAATAGCC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:89259891 original size:52 final size:48
Alignment explanation
Indices: 89259872--89260074 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
89259862 TGACAAGTGG
* *
89259872 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
89259918 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
89259970 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
89260016 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
89260062 AAAGTGATAAGTG
1 AAAGTGATAAGTG
89260075 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:89259926 original size:98 final size:98
Alignment explanation
Indices: 89259806--89260074 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
89259796 TTTGAGTACT
*
89259806 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
89259871 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
89259904 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
89259969 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
89260002 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
89260067 GATAAGTG
65 GAAAAGTG
89260075 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:89260082 original size:37 final size:37
Alignment explanation
Indices: 89260038--89260146 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
89260028 GATAGCTTTA
89260038 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
89260075 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
89260112 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
89260147 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:89260486 original size:12 final size:12
Alignment explanation
Indices: 89260469--89260497 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
89260459 TTGCTAGTGA
89260469 TATGATTTAAAT
1 TATGATTTAAAT
89260481 TATGATTTAAAT
1 TATGATTTAAAT
89260493 TATGA
1 TATGA
89260498 GCATGAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.48
Consensus pattern (12 bp):
TATGATTTAAAT
Found at i:89261484 original size:58 final size:59
Alignment explanation
Indices: 89261407--89261529 Score: 207
Period size: 58 Copynumber: 2.1 Consensus size: 59
89261397 CATGTGAACA
89261407 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* *
89261466 TGTGA-TATGTGATTCCGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGAT-T-
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
89261522 TGTGATTA
1 TGTGATTA
89261530 CGTGTAAGAC
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
56 5 0.08
57 3 0.05
58 48 0.79
59 5 0.08
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.35
Consensus pattern (59 bp):
TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:89261536 original size:49 final size:49
Alignment explanation
Indices: 89261466--89261560 Score: 163
Period size: 49 Copynumber: 1.9 Consensus size: 49
89261456 AAGTGATATG
* *
89261466 TGTGATATGTGATTCCGTGTAAGACCATAGTTGGGCTATGGCATCGGTA
1 TGTGATATGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCGGTA
*
89261515 TGTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 TGTGATATGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
89261561 AGAAAACGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (49 bp):
TGTGATATGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCGGTA
Found at i:89264769 original size:52 final size:48
Alignment explanation
Indices: 89264750--89264952 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
89264740 TGACAAGTGG
* *
89264750 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
89264796 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
89264848 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
89264894 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
89264940 AAAGTGATAAGTG
1 AAAGTGATAAGTG
89264953 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:89264804 original size:98 final size:98
Alignment explanation
Indices: 89264684--89264952 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
89264674 TTTGAGTACT
*
89264684 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
89264749 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
89264782 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
89264847 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
89264880 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
89264945 GATAAGTG
65 GAAAAGTG
89264953 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:89264960 original size:37 final size:37
Alignment explanation
Indices: 89264916--89265024 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
89264906 GATAGCTTTA
89264916 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
89264953 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
89264990 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
89265025 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:89265364 original size:12 final size:12
Alignment explanation
Indices: 89265347--89265375 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
89265337 TTGCTAGTGA
89265347 TATGATTTAAAT
1 TATGATTTAAAT
89265359 TATGATTTAAAT
1 TATGATTTAAAT
89265371 TATGA
1 TATGA
89265376 GCATGAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.48
Consensus pattern (12 bp):
TATGATTTAAAT
Found at i:89267436 original size:19 final size:19
Alignment explanation
Indices: 89267395--89267436 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
89267385 AAACATACCT
*
89267395 CCAATTAGAAACATCAAAT
1 CCAATTAGAAACATCAAAG
*
89267414 CCAATTAGAAACATCCAAG
1 CCAATTAGAAACATCAAAG
89267433 CCAA
1 CCAA
89267437 ATATCCAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.26, G:0.07, T:0.17
Consensus pattern (19 bp):
CCAATTAGAAACATCAAAG
Found at i:89277505 original size:5 final size:5
Alignment explanation
Indices: 89277491--89277520 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
89277481 TCTGTGTGTT
89277491 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTT
89277521 CACATTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:89278131 original size:28 final size:29
Alignment explanation
Indices: 89278069--89278131 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
89278059 TTCATTTTGA
* *
89278069 GTGACTAAAATAAAAGTGTACTAAAAATGAT
1 GTGACCAAAATAAAAGTG-A-TAAAAATGAC
*
89278100 GTGACCAAAATAAAAGTG-TAAATATGAC
1 GTGACCAAAATAAAAGTGATAAAAATGAC
89278128 GTGA
1 GTGA
89278132 AGTGTACAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 12 0.41
31 17 0.59
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.24
Consensus pattern (29 bp):
GTGACCAAAATAAAAGTGATAAAAATGAC
Found at i:89278248 original size:161 final size:161
Alignment explanation
Indices: 89277941--89278251 Score: 419
Period size: 161 Copynumber: 1.9 Consensus size: 161
89277931 GAAGTTGGAC
* * * *
89277941 GACCAAAATAAAAGTGTAATTATGATGTGGAGTGTACAATTAACCTTCGTTAGAGATATAATAGT
1 GACCAAAATAAAAGTGTAAATATGACGTGAAGTGTACAATTAACCTTCATTAGAGATATAATAGT
* * *** * * * *
89278006 TGAATGTTTAAAATGAAAGCGTCTTAAAAATTGGGTGACGAAATTGTAAGAATTTCATTTTGAGT
66 TGAATGATTAAAATGAAAGCATCTTAAAAATTAAATGACAAAATTGCAAAAATTTCATTTTGAGC
*
89278071 GACTAAAATAAAAGTGTACTAAAAATGATGT
131 GACTAAAACAAAAGTGTACTAAAAATGATGT
*
89278102 GACCAAAATAAAAGTGTAAATATGACGTGAAGTGTACAGTTAACCTTCATTAGAGATATAATAGT
1 GACCAAAATAAAAGTGTAAATATGACGTGAAGTGTACAATTAACCTTCATTAGAGATATAATAGT
* * *
89278167 TGAATGATTAAAATGAAAGTAT-TGTAAAAATTAAATGACAAAATTGCAAAAATTTTATTTTGGG
66 TGAATGATTAAAATGAAAGCATCT-TAAAAATTAAATGACAAAATTGCAAAAATTTCATTTTGAG
*
89278231 CGA-TCAAAACGAAAGTGTACT
130 CGACT-AAAACAAAAGTGTACT
89278252 TAAAGTGCTG
Statistics
Matches: 129, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
160 2 0.02
161 127 0.98
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.31
Consensus pattern (161 bp):
GACCAAAATAAAAGTGTAAATATGACGTGAAGTGTACAATTAACCTTCATTAGAGATATAATAGT
TGAATGATTAAAATGAAAGCATCTTAAAAATTAAATGACAAAATTGCAAAAATTTCATTTTGAGC
GACTAAAACAAAAGTGTACTAAAAATGATGT
Found at i:89284081 original size:63 final size:63
Alignment explanation
Indices: 89283972--89284091 Score: 195
Period size: 63 Copynumber: 1.9 Consensus size: 63
89283962 ATGCTCAACC
***
89283972 CGTCCGACCCGACTTGCTCCAGCCTAGGATCCGCGTATTTTAAATCGGAAGGGCTAAAAAACT
1 CGTCCGACCCGACCCACTCCAGCCTAGGATCCGCGTATTTTAAATCGGAAGGGCTAAAAAACT
* *
89284035 CGTCCGACCCGACCCACTCCAGCCTAGGATCCGCGTGTTTTTAATCGGAAGGGCTAA
1 CGTCCGACCCGACCCACTCCAGCCTAGGATCCGCGTATTTTAAATCGGAAGGGCTAA
89284092 TTGCGCTTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.22
Consensus pattern (63 bp):
CGTCCGACCCGACCCACTCCAGCCTAGGATCCGCGTATTTTAAATCGGAAGGGCTAAAAAACT
Found at i:89284380 original size:3 final size:3
Alignment explanation
Indices: 89284372--89284506 Score: 119
Period size: 3 Copynumber: 45.3 Consensus size: 3
89284362 TTAATTAATT
* * * * *
89284372 TTA TTA TTA TTA CTA TTA TTA CTA TTT TTG TTA TTA TGA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
89284420 TTA CTA TTA TTT TTA TTA CTA TTA TTA TTA CTA TTT TTG TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
89284468 TTA TTA CTG TTA -TA TTA CTA TTA TTA TTA TCA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
89284507 ATTTTCTTTT
Statistics
Matches: 101, Mismatches: 30, Indels: 2
0.76 0.23 0.02
Matches are distributed among these distances:
2 2 0.02
3 99 0.98
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:89284686 original size:3 final size:3
Alignment explanation
Indices: 89284670--89284731 Score: 63
Period size: 3 Copynumber: 20.7 Consensus size: 3
89284660 TTTAGAATAT
* * * *
89284670 TTA TTA TT- TGTA TTA TTG TTA TTA TTA TTA ATA TTA CTA TCA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
89284715 TTA TTA ATA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
89284732 TTTAAATCCT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
2 1 0.02
3 45 0.96
4 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:89284704 original size:21 final size:21
Alignment explanation
Indices: 89284670--89284730 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
89284660 TTTAGAATAT
** * *
89284670 TTATTATTTGTATTATTGTTA
1 TTATTATTAATATTATTATCA
*
89284691 TTATTATTAATATTACTATCA
1 TTATTATTAATATTATTATCA
89284712 TTATTATTAATATTATTAT
1 TTATTATTAATATTATTAT
89284731 TTTTAAATCC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (21 bp):
TTATTATTAATATTATTATCA
Found at i:89297037 original size:21 final size:21
Alignment explanation
Indices: 89297011--89297051 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
89297001 ATCTGCTCAA
* *
89297011 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
89297032 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
89297052 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:89301061 original size:11 final size:12
Alignment explanation
Indices: 89301036--89301071 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 12
89301026 TTTTTTAATA
89301036 TTATTTAATTTT
1 TTATTTAATTTT
89301048 TTATTTAATTTT
1 TTATTTAATTTT
89301060 TATAATTTAATT
1 T-T-ATTTAATT
89301072 AAATCTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 13 0.59
13 1 0.05
14 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATTTAATTTT
Found at i:89306273 original size:19 final size:18
Alignment explanation
Indices: 89306246--89306282 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
89306236 TACAAAAAAC
89306246 TATTATTTTCTTACTTTTT
1 TATTATTTTCTT-CTTTTT
*
89306265 TATTGTTTTCTTCTTTTT
1 TATTATTTTCTTCTTTTT
89306283 ATAATCTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.76
Consensus pattern (18 bp):
TATTATTTTCTTCTTTTT
Found at i:89306375 original size:12 final size:11
Alignment explanation
Indices: 89306352--89306386 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
89306342 ATATTGTATA
89306352 ATTATTATTTT
1 ATTATTATTTT
89306363 ATTATTAATTTT
1 ATTATT-ATTTT
89306375 ATTATTATTTT
1 ATTATTATTTT
89306386 A
1 A
89306387 GAGGCATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:89310001 original size:59 final size:59
Alignment explanation
Indices: 89309930--89310071 Score: 239
Period size: 59 Copynumber: 2.4 Consensus size: 59
89309920 GGGCTTTGTC
*
89309930 GGATTAACAGTCTAGGCTAAATCCTTGTATGACAAAGAATTCCCTATAAAGTTCATTCT
1 GGATTACCAGTCTAGGCTAAATCCTTGTATGACAAAGAATTCCCTATAAAGTTCATTCT
* *
89309989 GGATTACCAGTCTAGGCTAAATCCTTGTATGACAAAGAATTCCCTATAGAGTTCATTTT
1 GGATTACCAGTCTAGGCTAAATCCTTGTATGACAAAGAATTCCCTATAAAGTTCATTCT
* *
89310048 GGATTACAAGTCCAGGCTAAATCC
1 GGATTACCAGTCTAGGCTAAATCC
89310072 AGTCAATTAA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 78 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (59 bp):
GGATTACCAGTCTAGGCTAAATCCTTGTATGACAAAGAATTCCCTATAAAGTTCATTCT
Found at i:89319468 original size:38 final size:38
Alignment explanation
Indices: 89319426--89319503 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
89319416 ATTATTTTCA
*
89319426 AAACTTATAAGTAAAGAAAGTTTTTTATTTTATTCACC
1 AAACTTATAAGTAAAGAAAATTTTTTATTTTATTCACC
89319464 AAACTTATAAGTAAAGAAAATTTTTTATTTTATTCACC
1 AAACTTATAAGTAAAGAAAATTTTTTATTTTATTCACC
89319502 AA
1 AA
89319504 CACCCTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.41
Consensus pattern (38 bp):
AAACTTATAAGTAAAGAAAATTTTTTATTTTATTCACC
Found at i:89319748 original size:16 final size:16
Alignment explanation
Indices: 89319727--89319760 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
89319717 GTAATAAATT
*
89319727 AAAGTAAAAGTTAAAA
1 AAAGTAAAAGATAAAA
*
89319743 AAAGTAAATGATAAAA
1 AAAGTAAAAGATAAAA
89319759 AA
1 AA
89319761 CTGTAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAGTAAAAGATAAAA
Found at i:89320155 original size:118 final size:118
Alignment explanation
Indices: 89319902--89320129 Score: 320
Period size: 118 Copynumber: 2.0 Consensus size: 118
89319892 ATGAAATTAA
* * *
89319902 AAAAAAAAGGTGATGGGGTTGGACGGGCCTAGAGAAGCAAGGCTCATTAGGTTGTTGGCAAACAC
1 AAAACAAAGGTGATGGGATTGGACGGGCCTAGAGAAGCAAGGCCCATTAGGTTGTTGGCAAACAC
*
89319967 CAAGCTTGGGTACTTAAAAAAGAAGAAGAGAGAGACTGAAATTAAAAAAAAAAC
66 CAAGCTTGGGTACTTAAAAAAGAAGAAGAGAGAGACTCAAA-TAAAAAAAAAAC
* * *
89320021 AAAACAAAGGTGATGGGATTGGACGGGCCTAGAGAAG-TAGGCCCGTTAGGTTGTTGGCCAACAC
1 AAAACAAAGGTGATGGGATTGGACGGGCCTAGAGAAGCAAGGCCCATTAGGTTGTTGGCAAACAC
* * * *
89320085 TAGGCTTGGGTATTTAAAAAAGAAGAAGA-A-AGATTCAAA-AAAAAA
66 CAAGCTTGGGTACTTAAAAAAGAAGAAGAGAGAGACTCAAATAAAAAA
89320130 GAGAAAAGAT
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
114 6 0.06
116 7 0.07
117 1 0.01
118 49 0.50
119 35 0.36
ACGTcount: A:0.42, C:0.12, G:0.28, T:0.18
Consensus pattern (118 bp):
AAAACAAAGGTGATGGGATTGGACGGGCCTAGAGAAGCAAGGCCCATTAGGTTGTTGGCAAACAC
CAAGCTTGGGTACTTAAAAAAGAAGAAGAGAGAGACTCAAATAAAAAAAAAAC
Found at i:89321753 original size:48 final size:48
Alignment explanation
Indices: 89321682--89321779 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
89321672 ATTTGGAAGA
89321682 GTAATTAGTGACCTTCATACTATCATGGGTTCACGAGTAGCAAGCTAT
1 GTAATTAGTGACCTTCATACTATCATGGGTTCACGAGTAGCAAGCTAT
*
89321730 GTAATTAGTGACCTTCATACTATCATGGGTTCACGGGTAGCAAGCTAT
1 GTAATTAGTGACCTTCATACTATCATGGGTTCACGAGTAGCAAGCTAT
89321778 GT
1 GT
89321780 TCGCGCCGAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (48 bp):
GTAATTAGTGACCTTCATACTATCATGGGTTCACGAGTAGCAAGCTAT
Found at i:89322942 original size:18 final size:19
Alignment explanation
Indices: 89322921--89322959 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
89322911 AATTTGTAAA
89322921 AAAAATAAA-ATAAAAAAT
1 AAAAATAAAGATAAAAAAT
89322939 -AAAATAAAGATAAAAAAT
1 AAAAATAAAGATAAAAAAT
89322957 AAA
1 AAA
89322960 GAACACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 9 0.47
19 2 0.11
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (19 bp):
AAAAATAAAGATAAAAAAT
Found at i:89322960 original size:13 final size:13
Alignment explanation
Indices: 89322923--89322962 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
89322913 TTTGTAAAAA
89322923 AAATAAAATAAA-
1 AAATAAAATAAAG
89322935 AAATAAAATAAAG
1 AAATAAAATAAAG
89322948 ATAA-AAAATAAAG
1 A-AATAAAATAAAG
89322961 AA
1 AA
89322963 CACACAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 13 0.50
13 11 0.42
14 2 0.08
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (13 bp):
AAATAAAATAAAG
Found at i:89332714 original size:16 final size:17
Alignment explanation
Indices: 89332690--89332731 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
89332680 CTTCAACAAG
89332690 AAAAA-AAAATATAAC-
1 AAAAAGAAAATATAACT
* *
89332705 AAAAAGAAAATCTATCT
1 AAAAAGAAAATATAACT
89332722 AAAAAGAAAA
1 AAAAAGAAAA
89332732 GAAAAAACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 5 0.22
16 8 0.35
17 10 0.43
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (17 bp):
AAAAAGAAAATATAACT
Found at i:89335476 original size:29 final size:29
Alignment explanation
Indices: 89335440--89335537 Score: 169
Period size: 29 Copynumber: 3.4 Consensus size: 29
89335430 TTTGTGTACC
* *
89335440 ATGTGAAAAGGGATAGCTTTGGCTATTGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
89335469 ATGTGAAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
89335498 ATGTGGAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
89335527 ATGTGAAAAGG
1 ATGTGAAAAGG
89335538 TTAGGTATAC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.32, C:0.10, G:0.33, T:0.26
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:89335572 original size:33 final size:32
Alignment explanation
Indices: 89335530--89335719 Score: 222
Period size: 32 Copynumber: 5.9 Consensus size: 32
89335520 CTATCGAATG
* *
89335530 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
1 TGAAAAGGTTAGGTACACTTTGTGTGTA-CACA
* *
89335563 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTAGGTACACTTTGTGTGTACACA
*
89335595 TGAAAAGGTTATGTACACTTTGTGTGTACACA
1 TGAAAAGGTTAGGTACACTTTGTGTGTACACA
*
89335627 TGAAAAGGTTATGTACACTTTGTGTGTACA-A
1 TGAAAAGGTTAGGTACACTTTGTGTGTACACA
* * * *
89335658 TTGAAAAGG-AAGGTATACTTTGTGTATACCATA
1 -TGAAAAGGTTAGGTACACTTTGTGTGTA-CACA
** *
89335691 TGAAAAGGAAAGGTATACTTTGTGTGTAC
1 TGAAAAGGTTAGGTACACTTTGTGTGTAC
89335720 CAATCAGAAA
Statistics
Matches: 143, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
31 16 0.11
32 83 0.58
33 44 0.31
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.34
Consensus pattern (32 bp):
TGAAAAGGTTAGGTACACTTTGTGTGTACACA
Found at i:89335642 original size:64 final size:65
Alignment explanation
Indices: 89335530--89335719 Score: 276
Period size: 64 Copynumber: 3.0 Consensus size: 65
89335520 CTATCGAATG
*
89335530 TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACAAT
* * *
89335595 TGAAAAGGTTATGTACACTTTGTGTGTA-CACATGAAAAGGTTATGTACACTTTGTGTGTACAAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACAAT
* * ** * *
89335659 TGAAAAGG-AAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTAC
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTAC
89335720 CAATCAGAAA
Statistics
Matches: 111, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
63 15 0.14
64 71 0.64
65 25 0.23
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.34
Consensus pattern (65 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACAAT
Found at i:89339829 original size:138 final size:138
Alignment explanation
Indices: 89339501--89339925 Score: 634
Period size: 138 Copynumber: 3.1 Consensus size: 138
89339491 AGAGAACATA
* *
89339501 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
1 AATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTAT
* * *
89339566 TAATATAAACAATTATATTAATTAATTTTGGTCAAAAATATAAAAGAAATGAAAAATTAATATTT
66 TAATATAAACAGTTATATTAATTAATTTTGGTC-AAAATATAAAAGAAATG-GAAATTAATATTA
89339631 TTTTGGAAAG
129 TTTTGGAAAG
* *
89339641 AATATAATTAATATATTAATTTGATTCATACAAAATATTAATTGTGTATATTTTACAGAATTTAT
1 AATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTAT
* * * * *
89339706 TAATATAAACTGTTACATTAATTAATTTCGGTCAAAATATTAAAGATATGGAAATTAATATTATT
66 TAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGAAATGGAAATTAATATTATT
*
89339771 TTAGAAAG
131 TTGGAAAG
* *
89339779 AATATAATTAATATATAAATTTTATTCATACAAAATATTAATTGTATATATTTTACTGAATTTAT
1 AATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTAT
* * ** * *
89339844 TAATATAAACAGTTATATTAATTAATTTTAGTTAAAATATAAAAGGCATGGACATTAATATTCTT
66 TAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGAAATGGAAATTAATATTATT
*
89339909 TTGGAAAT
131 TTGGAAAG
89339917 AATATAATT
1 AATATAATT
89339926 CATTTTTCTA
Statistics
Matches: 257, Mismatches: 28, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
138 151 0.59
139 15 0.06
140 91 0.35
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (138 bp):
AATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTAT
TAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGAAATGGAAATTAATATTATT
TTGGAAAG
Found at i:89340107 original size:75 final size:74
Alignment explanation
Indices: 89339943--89340109 Score: 210
Period size: 75 Copynumber: 2.2 Consensus size: 74
89339933 CTAACTTTCC
*
89339943 ATTAATAAA-GGAATAATCCTATTTCTTTTGGAAAGAATATAATTCTTTTTTCTAACTTTCCATT
1 ATTAA-AAAGGGAATAATCCTATTTCTTTTGAAAAGAATATAATTCTTTTTTCTAACTTTCCATT
** *
89340007 TGTTTTCTCT
65 TGCCTTCTCA
* ** * * * *
89340017 ATTCATTAGGAAATAATCTTGTATTCTTTTGAAAAGAATATAATTCTTTTTTCTAACTTTTCATT
1 ATTAAAAAGGGAATAATCCTAT-TTCTTTTGAAAAGAATATAATTCTTTTTTCTAACTTTCCATT
89340082 TGCCTTCTCA
65 TGCCTTCTCA
89340092 ATTAAAAAGGGAATAATC
1 ATTAAAAAGGGAATAATC
89340110 ATGGTTTTTC
Statistics
Matches: 76, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
73 1 0.01
74 14 0.18
75 61 0.80
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.46
Consensus pattern (74 bp):
ATTAAAAAGGGAATAATCCTATTTCTTTTGAAAAGAATATAATTCTTTTTTCTAACTTTCCATTT
GCCTTCTCA
Found at i:89344619 original size:51 final size:51
Alignment explanation
Indices: 89344538--89344639 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
89344528 GTAGCATGTG
* *
89344538 AAACTAGTGATAAAGTTATGGAGGGTATTATTGTGCTATGATGGGATATGA
1 AAACTAGTGATAAAGTTATGGAAGGCATTATTGTGCTATGATGGGATATGA
*
89344589 AAACTAGTGGTAAAGTTATGGAAGGCATTATTGTGCTATGATGGGATATGA
1 AAACTAGTGATAAAGTTATGGAAGGCATTATTGTGCTATGATGGGATATGA
89344640 CTAGCCTATA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.32
Consensus pattern (51 bp):
AAACTAGTGATAAAGTTATGGAAGGCATTATTGTGCTATGATGGGATATGA
Found at i:89345741 original size:62 final size:61
Alignment explanation
Indices: 89345644--89345769 Score: 173
Period size: 62 Copynumber: 2.0 Consensus size: 61
89345634 TGAGAAATCG
* *
89345644 ACATGGCCTAGACTTCCGTACACGGGTAGATCACACGCCCGTGCCTATTCAACAGACTCTAA
1 ACATGACCTAGACTTCCGTACACGGGTAGACCACACGCCCGTGCCTATTCAACAGACTC-AA
* * * *
89345706 ACATGACCTGGACTTCC-TCACATGGGTAGACCACACGCCCGTGTCTATTTAACAGACTCAA
1 ACATGACCTAGACTTCCGT-ACACGGGTAGACCACACGCCCGTGCCTATTCAACAGACTCAA
89345767 ACA
1 ACA
89345770 CGATTTGAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
61 6 0.11
62 51 0.89
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (61 bp):
ACATGACCTAGACTTCCGTACACGGGTAGACCACACGCCCGTGCCTATTCAACAGACTCAA
Found at i:89352204 original size:16 final size:17
Alignment explanation
Indices: 89352183--89352215 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
89352173 ACTACTTTTT
89352183 ATTTTATTTTT-CTTTA
1 ATTTTATTTTTACTTTA
89352199 ATTTTATTTTTACTTTA
1 ATTTTATTTTTACTTTA
89352216 TCCTTAGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTTATTTTTACTTTA
Found at i:89359413 original size:40 final size:40
Alignment explanation
Indices: 89359332--89359549 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
89359322 AAACCAAGTA
* * * * *
89359332 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAATTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
89359371 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
89359411 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
89359451 CCTTCTGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
89359491 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAACG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
89359531 CTTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
89359550 TTATCATCCG
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 14 0.09
40 145 0.91
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:89364715 original size:26 final size:25
Alignment explanation
Indices: 89364681--89364742 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
89364671 TTAATTATTT
*
89364681 CTGTTAAAAATTTC-ATTCATCTCTA
1 CTGTTAAAAACTTCAATT-ATCTCTA
89364706 CTGTTAAAAACTTCAATTATCTCTA
1 CTGTTAAAAACTTCAATTATCTCTA
*
89364731 TTGTTAAAAACT
1 CTGTTAAAAACT
89364743 GGTGTGGCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 31 0.91
26 3 0.09
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (25 bp):
CTGTTAAAAACTTCAATTATCTCTA
Found at i:89365160 original size:7 final size:7
Alignment explanation
Indices: 89365121--89365174 Score: 58
Period size: 7 Copynumber: 7.6 Consensus size: 7
89365111 TTAGCAAACA
89365121 AAAATTT
1 AAAATTT
89365128 AATAATATT
1 AA-AAT-TT
89365137 AATAA-TT
1 AA-AATTT
*
89365144 GAAA-TT
1 AAAATTT
89365150 AAAATTT
1 AAAATTT
89365157 AAAATTT
1 AAAATTT
89365164 AAAATTT
1 AAAATTT
89365171 AAAA
1 AAAA
89365175 AGCTATGGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
6 7 0.17
7 25 0.60
8 3 0.07
9 7 0.17
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (7 bp):
AAAATTT
Found at i:89373119 original size:30 final size:29
Alignment explanation
Indices: 89373079--89373173 Score: 93
Period size: 31 Copynumber: 3.1 Consensus size: 29
89373069 GTTAATAATT
89373079 TATAAGAATTGAATC-AAATCAAAATTTCATG
1 TATAA-AATTGAA-CAAAATCAAAA-TTCATG
*
89373110 TATAAAATTGCACAAAATCAAAATTCATG
1 TATAAAATTGAACAAAATCAAAATTCATG
* * * *
89373139 TATACAATTGCACTTTAAATCATAATTCATG
1 TATAAAATTGAAC--AAAATCAAAATTCATG
89373170 TATA
1 TATA
89373174 GTTTTGGGAT
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
29 19 0.33
30 15 0.26
31 23 0.40
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (29 bp):
TATAAAATTGAACAAAATCAAAATTCATG
Found at i:89373137 original size:29 final size:30
Alignment explanation
Indices: 89373094--89373173 Score: 108
Period size: 29 Copynumber: 2.6 Consensus size: 30
89373084 GAATTGAATC
89373094 AAATCAAAATTTCATGTATAAAATTGCAC-A
1 AAATCAAAA-TTCATGTATAAAATTGCACTA
* *
89373124 AAATCAAAATTCATGTATACAATTGCACTTT
1 AAATCAAAATTCATGTATAAAATTGCAC-TA
*
89373155 AAATCATAATTCATGTATA
1 AAATCAAAATTCATGTATA
89373174 GTTTTGGGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 18 0.40
30 9 0.20
31 18 0.40
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (30 bp):
AAATCAAAATTCATGTATAAAATTGCACTA
Found at i:89373805 original size:24 final size:24
Alignment explanation
Indices: 89373773--89373826 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
89373763 CCTATTGCCT
*
89373773 ACTATAAAGGTGGCGACACCACCA
1 ACTATAAAGGTGGCAACACCACCA
89373797 ACTATAAAGGTGGCAACACCACCA
1 ACTATAAAGGTGGCAACACCACCA
89373821 ACTATA
1 ACTATA
89373827 TATACTCTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.41, C:0.28, G:0.17, T:0.15
Consensus pattern (24 bp):
ACTATAAAGGTGGCAACACCACCA
Found at i:89374216 original size:50 final size:52
Alignment explanation
Indices: 89374162--89374270 Score: 159
Period size: 52 Copynumber: 2.1 Consensus size: 52
89374152 ATGAAAGAAA
89374162 GCGGCACCAAAAAACAATT-TTT-GTTTATTTTGATGCCTCCAAATAATGTG
1 GCGGCACCAAAAAACAATTGTTTAGTTTATTTTGATGCCTCCAAATAATGTG
* * * * *
89374212 GCGGCACCAAAAAATAATTGTTTATTTTATTTTGGTTCCTTCAAATAATGTG
1 GCGGCACCAAAAAACAATTGTTTAGTTTATTTTGATGCCTCCAAATAATGTG
89374264 GCGGCAC
1 GCGGCAC
89374271 TATAAATATT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
50 18 0.35
51 3 0.06
52 31 0.60
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
GCGGCACCAAAAAACAATTGTTTAGTTTATTTTGATGCCTCCAAATAATGTG
Found at i:89376529 original size:56 final size:56
Alignment explanation
Indices: 89376443--89376551 Score: 182
Period size: 56 Copynumber: 1.9 Consensus size: 56
89376433 TTTCGAGGCA
* *
89376443 ACAAATCTGATGAGTAAGTTCATAAATATTACTTATGAATATTTATGAGTCAAACC
1 ACAAATCCGATGAGCAAGTTCATAAATATTACTTATGAATATTTATGAGTCAAACC
* *
89376499 ACAAATCCGATGAGCAAGTTCGTAAATATTATTTATGAATATTTATGAGTCAA
1 ACAAATCCGATGAGCAAGTTCATAAATATTACTTATGAATATTTATGAGTCAA
89376552 TTATGGTTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (56 bp):
ACAAATCCGATGAGCAAGTTCATAAATATTACTTATGAATATTTATGAGTCAAACC
Found at i:89378871 original size:20 final size:20
Alignment explanation
Indices: 89378819--89378871 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
89378809 TATTTAAGCT
* *
89378819 AAAGTAAGTAAACGCAATGG
1 AAAGTAAGTAAATGCAATGA
*
89378839 AAAGTAAGTAAATGCTATGA
1 AAAGTAAGTAAATGCAATGA
89378859 AAAGTAAGTAAAT
1 AAAGTAAGTAAAT
89378872 AGAAGGGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.53, C:0.06, G:0.21, T:0.21
Consensus pattern (20 bp):
AAAGTAAGTAAATGCAATGA
Found at i:89382207 original size:42 final size:41
Alignment explanation
Indices: 89382080--89382208 Score: 123
Period size: 42 Copynumber: 3.0 Consensus size: 41
89382070 CACAAGGTAC
* * * *
89382080 CATACCAATGCCATATTCCAGATATGGTCTTACATGGGATCT
1 CATATCAATG-CATATCCCAGATATGGTCTTACATGAGAACT
* * * * * *
89382122 CATATCAATGCAAATAGCTCAGCTATAGTCTTACACGAAAACT
1 CATATCAATGC--ATATCCCAGATATGGTCTTACATGAGAACT
*
89382165 CATATCGATGTCATATCCCAGATATGGTCTTACATGAGAACT
1 CATATCAATG-CATATCCCAGATATGGTCTTACATGAGAACT
89382207 CA
1 CA
89382209 AATAACCCTA
Statistics
Matches: 67, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
41 1 0.01
42 35 0.52
43 30 0.45
44 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (41 bp):
CATATCAATGCATATCCCAGATATGGTCTTACATGAGAACT
Found at i:89384975 original size:18 final size:18
Alignment explanation
Indices: 89384948--89385004 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
89384938 ATACACAGAA
*
89384948 TAAGCTTTGAAAGCTTAG
1 TAAGCCTTGAAAGCTTAG
89384966 TAAGCCTTGAAAGCTTAG
1 TAAGCCTTGAAAGCTTAG
*
89384984 TAAGCCTTAAAAGCTTAG
1 TAAGCCTTGAAAGCTTAG
89385002 TAA
1 TAA
89385005 TCCATAAGCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (18 bp):
TAAGCCTTGAAAGCTTAG
Found at i:89385658 original size:43 final size:43
Alignment explanation
Indices: 89385590--89385763 Score: 155
Period size: 43 Copynumber: 4.0 Consensus size: 43
89385580 AAAACTCATA
*
89385590 CGATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAATAT
1 CGATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAATCAAATAT
* *
89385633 CGATGCCACTGTCCTAGACAGGGTCTTACACGAAATCAAATAT
1 CGATGCCACTGTCCCAGACAGGGTCTTACACGTAATCAAATAT
* * *
89385676 -GATGCTGA-TGTCCCAGACATGGTCTTACACGTAAATCATAA-GT
1 CGATGC-CACTGTCCCAGACAGGGTCTTACACGT-AATCA-AATAT
* * *
89385719 CGATGCTAAC-GTCCCAGAC-GTGGTCTTACACGAAATCACATAT
1 CGATGC-CACTGTCCCAGACAG-GGTCTTACACGTAATCAAATAT
89385762 CG
1 CG
89385764 GATCCTATGT
Statistics
Matches: 109, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 29 0.27
43 50 0.46
44 30 0.28
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
CGATGCCACTGTCCCAGACAGGGTCTTACACGTAATCAAATAT
Found at i:89385746 original size:86 final size:85
Alignment explanation
Indices: 89385600--89385761 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 85
89385590 CGATGCCAAC
* * * *
89385600 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCTAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCAACTGTCCCAGACAGGGTCTTACACG
89385665 AAATCAAATATGATGCTGAT
66 AAATCAAATATGATGCTGAT
*
89385685 GTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCTAAC-GTCCCAGAC-GTGGTCTTA
1 GTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGC-AACTGTCCCAGACAG-GGTCTTA
*
89385747 CACGAAATCACATAT
62 CACGAAATCAAATAT
89385762 CGGATCCTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
85 22 0.33
86 41 0.61
87 4 0.06
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCAACTGTCCCAGACAGGGTCTTACACG
AAATCAAATATGATGCTGAT
Found at i:89388206 original size:6 final size:6
Alignment explanation
Indices: 89388191--89388222 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
89388181 GGAATACACC
*
89388191 GTAACG GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GT
89388223 CAGGTACAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:89389209 original size:4 final size:4
Alignment explanation
Indices: 89389200--89389237 Score: 58
Period size: 4 Copynumber: 9.2 Consensus size: 4
89389190 AATTTTCCCT
*
89389200 TTTC TTTC TTTGT TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTT-C TTTC TTTC TTTC TTTC TTTC TTTC T
89389238 CCCCTGTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 28 0.90
5 3 0.10
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:89389217 original size:13 final size:12
Alignment explanation
Indices: 89389199--89389235 Score: 56
Period size: 13 Copynumber: 3.0 Consensus size: 12
89389189 CAATTTTCCC
89389199 TTTTCTTTCTTT
1 TTTTCTTTCTTT
89389211 GTTTTCTTTCTTT
1 -TTTTCTTTCTTT
*
89389224 CTTTCTTTCTTT
1 TTTTCTTTCTTT
89389236 CTCCCCTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (12 bp):
TTTTCTTTCTTT
Found at i:89389381 original size:19 final size:19
Alignment explanation
Indices: 89389357--89389395 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
89389347 AATACTTATT
*
89389357 TATTATT-TATACATGTGTA
1 TATTATTAT-TACATATGTA
89389376 TATTATTATTACATATGTA
1 TATTATTATTACATATGTA
89389395 T
1 T
89389396 CCATAGATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (19 bp):
TATTATTATTACATATGTA
Found at i:89395081 original size:39 final size:39
Alignment explanation
Indices: 89395036--89395140 Score: 174
Period size: 39 Copynumber: 2.7 Consensus size: 39
89395026 GAGATTGGAA
89395036 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
89395075 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
* * * *
89395114 ATATCCAGACTTAAGGTCCGCAGGCTA
1 ATATCCGGACATGAGATCCGCAGGCTA
89395141 CGTGCTGGGA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (39 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
Found at i:89399361 original size:4 final size:4
Alignment explanation
Indices: 89399352--89399376 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
89399342 AATTTTCCCT
89399352 TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC T
89399377 CCCCTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:89399521 original size:19 final size:19
Alignment explanation
Indices: 89399497--89399535 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
89399487 AATACTTATT
*
89399497 TATTATT-TATACATGTGTA
1 TATTATTAT-TACATATGTA
89399516 TATTATTATTACATATGTA
1 TATTATTATTACATATGTA
89399535 T
1 T
89399536 CCATAGATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (19 bp):
TATTATTATTACATATGTA
Found at i:89399597 original size:16 final size:17
Alignment explanation
Indices: 89399580--89399655 Score: 61
Period size: 20 Copynumber: 4.4 Consensus size: 17
89399570 TATTTATCAT
89399580 ATAAATATCTTATAAT-
1 ATAAATATCTTATAATA
* *
89399596 ATAATTAT-TTA-ATTA
1 ATAAATATCTTATAATA
89399611 ATAAATATCTTTTATAAATA
1 ATAAATATC--TTAT-AATA
89399631 ATAAATATCTT-TGAATA
1 ATAAATATCTTAT-AATA
89399648 ATTAAATA
1 A-TAAATA
89399656 CATGTATTAC
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
14 2 0.04
15 10 0.21
16 7 0.15
17 6 0.12
18 11 0.23
20 12 0.25
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (17 bp):
ATAAATATCTTATAATA
Found at i:89402255 original size:84 final size:84
Alignment explanation
Indices: 89402102--89402599 Score: 359
Period size: 84 Copynumber: 5.9 Consensus size: 84
89402092 AATTACATCA
* * * * * * *
89402102 AAATAAAATC-TGCTAAACAACAGG-AATAATTCCCGAAACATA-ATTATTTGA-TTAAGTTTTT
1 AAATAAAATCTTGTTAAACAGC-GGAAATAAATCCCGAAACATATTTTATTTAATTTAA-TTCTA
* *
89402163 GTTTGGAAAC-AAATCAATATC
64 ATTTGGAAACAAAAT-AAAATC
* * * * *
89402184 GAATAAAATCTTGTTAAACAGTGGAAACAAATCCCGAAATAGATTTTATTTAATTTAATTCTAAT
1 AAATAAAATCTTGTTAAACAGCGGAAATAAATCCCGAAACATATTTTATTTAATTTAATTCTAAT
89402249 TTGGAAACAAAATAAAATC
66 TTGGAAACAAAATAAAATC
* * *
89402268 AAATAAAATCTTGTTAAACGGCGGGAATAAATCCCGAAACATATTTTATTTCATTTAATTCTAAT
1 AAATAAAATCTTGTTAAACAGCGGAAATAAATCCCGAAACATATTTTATTTAATTTAATTCTAAT
*
89402333 TTGGAAACAAAATAAAATT
66 TTGGAAACAAAATAAAATC
** * *
89402352 AAATAAAATCTTGTTAAAGGGC-GAGAATAAATCCTGAAACATATTTTATTTAATTTTAATTTTT
1 AAATAAAATCTTGTTAAACAGCGGA-AATAAATCCCGAAACATATTTTATTTAA-TTTAA-TTCT
** * *
89402416 CGTTTTGATAACAAAATCAAAATG
63 AATTTGGA-AACAAAAT-AAAATC
* ** * ** *
89402440 TAAT-AAATC-CATTGAATGGC-GAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCT
1 AAATAAAATCTTGTTAAACAGCGGA-AATAAATCCCGAAACATATTTTATTTAA-TTTAA-TTCT
* * * *
89402502 CATTTGGAAATAAAATCAGAATTT
63 AATTTGGAAACAAAAT-A-AAATC
* * * * * * * * *
89402526 GAATAGAAT-TCGTTAAACGGTGGGAATAAATCTCGAAACAGATTTTATTTTAATTTTAATACTA
1 AAATAAAATCTTGTTAAACAGCGGAAATAAATCCCGAAACATATTTTA-TTTAA-TTTAATTCTA
*
89402590 GTTTTGGAAA
64 -ATTTGGAAA
89402600 TAAATTCAAA
Statistics
Matches: 342, Mismatches: 58, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
82 11 0.03
83 23 0.07
84 146 0.43
85 22 0.06
86 65 0.19
87 48 0.14
88 27 0.08
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (84 bp):
AAATAAAATCTTGTTAAACAGCGGAAATAAATCCCGAAACATATTTTATTTAATTTAATTCTAAT
TTGGAAACAAAATAAAATC
Found at i:89402359 original size:168 final size:171
Alignment explanation
Indices: 89402102--89402612 Score: 468
Period size: 168 Copynumber: 3.0 Consensus size: 171
89402092 AATTACATCA
* ** * * * * * **
89402102 AAATAAAATCTGCTAAACAACAGGAATAATTCCCGAAACATA-ATTATTTGA-TTAAGTTTTTGT
1 AAATAAAATCTGTTAAACGGCGGGAATAAATCCCGAAACATATTTTATTTAATTTAAGTTCTAAT
* * * *
89402165 TTGGAAAC-AAATCAATATCGAATAAAATCTTGTTAAACAGTGGAAACAAATCCCGAAATAGATT
66 TTGGAAACAAAATCAAAATTGAATAAAATCTTGTTAAACAGTGGAAATAAATCCCGAAACAGATT
89402229 TTATTTAA-TTTAATTCTAATTTGGAAACAAAAT-AAAATC
131 TTATTTAATTTTAATTCTAATTTGGAAACAAAATCAAAATC
*
89402268 AAATAAAATCTTGTTAAACGGCGGGAATAAATCCCGAAACATATTTTATTTCATTTAA-TTCTAA
1 AAATAAAATC-TGTTAAACGGCGGGAATAAATCCCGAAACATATTTTATTTAATTTAAGTTCTAA
* * * *
89402332 TTTGGAAACAAAAT-AAAATTAAATAAAATCTTGTT-AA-AGGGCGAGAATAAATCCTGAAACAT
65 TTTGGAAACAAAATCAAAATTGAATAAAATCTTGTTAAACAGTG-GA-AATAAATCCCGAAACAG
* ** * *
89402394 ATTTTATTTAATTTTAATTTTTCGTTTTGATAACAAAATCAAAATG
128 ATTTTATTTAATTTTAA-TTCTAATTTGGA-AACAAAATCAAAATC
* ** * * * * * *
89402440 TAAT-AAATCCATTGAATGGCGAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCTCA
1 AAATAAAATCTGTTAAACGGCGGGAATAAATCCCGAAACATATTTTATTTAA-TTTAAGTTCTAA
* * * * * * *
89402504 TTTGGAAATAAAATCAGAATTTGAATAGAAT-TCGTTAAACGGTGGGAATAAATCTCGAAACAGA
65 TTTGGAAACAAAATCA-AAATTGAATAAAATCTTGTTAAACAGTGGAAATAAATCCCGAAACAGA
* * * *
89402568 TTTTATTTTAATTTTAATACTAGTTTTGGAAATAAATTCAAAATC
129 TTTTA-TTTAATTTTAATTCTA-ATTTGGAAACAAAATCAAAATC
89402613 CATTGAACGG
Statistics
Matches: 276, Mismatches: 51, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
166 13 0.05
167 31 0.11
168 61 0.22
169 13 0.05
170 43 0.16
171 18 0.07
172 26 0.09
173 39 0.14
174 30 0.11
175 2 0.01
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (171 bp):
AAATAAAATCTGTTAAACGGCGGGAATAAATCCCGAAACATATTTTATTTAATTTAAGTTCTAAT
TTGGAAACAAAATCAAAATTGAATAAAATCTTGTTAAACAGTGGAAATAAATCCCGAAACAGATT
TTATTTAATTTTAATTCTAATTTGGAAACAAAATCAAAATC
Found at i:89402477 original size:86 final size:85
Alignment explanation
Indices: 89402212--89402909 Score: 402
Period size: 88 Copynumber: 8.4 Consensus size: 85
89402202 CAGTGGAAAC
* * *
89402212 AAATCCCGAAATAGATTTTATTTAA-TTTAA-TTCTAATTTGGAAACAAAAT-AAAATCAAATAA
1 AAATCCCGAAACAGATTTTATTTAATTTTAATTTCTCATTTGGAAACAAAATCAAAATTAAAT-A
* *
89402274 AATCTTGTTAAACGGCGGGAAT
65 AATC-CGTTAAACGGCGAGAAT
* * *
89402296 AAATCCCGAAACATATTTTATTTCA-TTTAA-TTCTAATTTGGAAACAAAAT-AAAATTAAATAA
1 AAATCCCGAAACAGATTTTATTTAATTTTAATTTCTCATTTGGAAACAAAATCAAAATTAAAT-A
* *
89402358 AATCTTGTTAAAGGGCGAGAAT
65 AATC-CGTTAAACGGCGAGAAT
* * * * *
89402380 AAATCCTGAAACATATTTTATTTAATTTTAATTTTTCGTTTTGATAACAAAATCAAAATGT-AAT
1 AAATCCCGAAACAGATTTTATTTAATTTTAATTTCTCATTTGGA-AACAAAATCAAAAT-TAAAT
* * *
89402444 AAATCCATTGAATGGCGAGAAT
64 AAATCCGTTAAACGGCGAGAAT
* * * *
89402466 AAATCCCGAAACAGATTTTATTTAACTTTAATTTCTCATTTGGAAATAAAATCAGAATTTGAATA
1 AAATCCCGAAACAGATTTTATTTAATTTTAATTTCTCATTTGGAAACAAAATCA-AAATTAAATA
* * *
89402531 GAATTCGTTAAACGGTGGGAAT
65 -AATCCGTTAAACGGCGAGAAT
* * *
89402553 AAATCTCGAAACAGATTTTATTTTAATTTTAA-TACT-AGTTTTGG-----AAAT--AAATT-CA
1 AAATCCCGAAACAGATTTTA-TTTAATTTTAATTTCTCA--TTTGGAAACAAAATCAAAATTAAA
* * *
89402608 -AAATCCATTGAACGGCGGGAAT
63 TAAATCCGTTAAACGGCGAGAAT
* * * * * **
89402630 AAATCCCGAAATAGATTTTATTTTAGTTTTAATACTTGT--TTTAGAAATAAAA-CAAAAAATGG
1 AAATCCCGAAACAGATTTTA-TTTAATTTTAAT--TTCTCATTTGGAAACAAAATC--AAAATTA
* *
89402692 AATAAAATCCGTTGAACGGCGGGAAT
61 AAT-AAATCCGTTAAACGGCGAGAAT
* * * * ** * * *
89402718 AAATCACAAAATAAATTTTATTTTAATTTTAA-AACTCGCTTTGGAAATAAAATCAAAATTGGAA
1 AAATCCCGAAACAGATTTTA-TTTAATTTTAATTTCTC-ATTTGGAAACAAAATCAAAATT-AAA
* **
89402782 TAAAATCCGTTGAACGTTGAGAAT
63 T-AAATCCGTTAAACGGCGAGAAT
* * * * **
89402806 AAATCCCG--A-A-A-TTGATTTAA-TTCACTTT-TAATTTGGAAACAAAAT-TGAA-T--A-AA
1 AAATCCCGAAACAGATTTTATTTAATTTTAATTTCTCATTTGGAAACAAAATCAAAATTAAATAA
* *
89402859 ATCTGTTAAACGACGAGAAT
66 ATCCGTTAAACGGCGAGAAT
* *
89402879 AAATCCCGAAATATATTTTATTTTAATTTTA
1 AAATCCCGAAACAGATTTTA-TTTAATTTTA
89402910 GTATTCGTTT
Statistics
Matches: 497, Mismatches: 78, Indels: 82
0.76 0.12 0.12
Matches are distributed among these distances:
73 26 0.05
75 2 0.00
76 1 0.00
77 51 0.10
78 5 0.01
79 8 0.02
80 22 0.04
81 4 0.01
82 8 0.02
83 7 0.01
84 102 0.21
85 21 0.04
86 69 0.14
87 55 0.11
88 114 0.23
89 2 0.00
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.34
Consensus pattern (85 bp):
AAATCCCGAAACAGATTTTATTTAATTTTAATTTCTCATTTGGAAACAAAATCAAAATTAAATAA
ATCCGTTAAACGGCGAGAAT
Found at i:89402568 original size:87 final size:85
Alignment explanation
Indices: 89402185--89402990 Score: 423
Period size: 84 Copynumber: 9.6 Consensus size: 85
89402175 ATCAATATCG
* * * * * *
89402185 AATAAAATCTTGTTAAACAGTGGAAACAAATCCCGAAATAGATTTTATTTAATTTAA-TTCTAAT
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTAATTTCTAAT
*
89402249 TTGGAAACAAAATAAAATCA
66 TTGGAAACAAAATAAAATTA
* * *
89402269 AATAAAATCTTGTTAAACGGCGGGAATAAATCCCGAAACATATTTTATTTCATTTAA-TTCTAAT
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTAATTTCTAAT
89402333 TTGGAAACAAAATAAAATTA
66 TTGGAAACAAAATAAAATTA
* * * * * * **
89402353 AATAAAATCTTGTTAAAGGGCGAGAATAAATCCTGAAACATATTTTATTTAATTTTAATTTTTCG
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAA-TTTAATTTCTAA
*
89402418 TTTTGATAACAAAATCAAAATGT-
65 TTTGGA-AACAAAAT-AAAAT-TA
* * * * *
89402441 AAT-AAATC-CATTGAATGGCGAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCTCA
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAA-TTTAATTTCTAA
* * *
89402504 TTTGGAAATAAAATCAGAATTTG
65 TTTGGAAACAAAAT-A-AAATTA
* * * *
89402527 AATAGAAT-TCGTTAAACGGTGGGAATAAATCTCGAAACAGATTTTATTTTAATTTTAA-TACTA
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTA-TTTAA-TTTAATTTCTA
*
89402590 GTTTTGG-----AAAT-AAATT-
64 -ATTTGGAAACAAAATAAAATTA
* * * * * *
89402606 --CAAAATC-CATTGAACGGCGGGAATAAATCCCGAAATAGATTTTATTTTAGTTTTAATACTTG
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTA-TTTA-ATTTAAT--TTC
* * * **
89402668 T--TTTAGAAATAAAACAAAAAATGG
62 TAATTTGGAAA-CAAA-ATAAAATTA
* * * * * **
89402692 AATAAAATC-CGTTGAACGGCGGGAATAAATCACAAAATAAATTTTATTTTAATTTTAA-AACTC
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTA-TTTAA-TTTAATTTCT-
** * *
89402755 GCTTTGGAAATAAAATCAAAATTGG
63 AATTTGGAAACAAAAT-AAAATT-A
* ** * * * *
89402780 AATAAAATC-CGTTGAACGTTGAGAATAAATCCCG--A-A-A-TTGATTTAATTCACTTT-TAAT
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTAATTTCTAAT
*
89402838 TTGGAAAC-----AAAATTG
66 TTGGAAACAAAATAAAATTA
* * * * *
89402853 AATAAAATCT-GTTAAACGACGAGAATAAATCCCGAAATATATTTTATTTTAATTTTAGTATTC-
1 AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTA-TTTAA-TTTAAT-TTCT
* * *
89402916 -GTTTGGAAA-TAAA-AAAATAAA
63 AATTTGGAAACAAAATAAAAT-TA
* * * * *
89402937 GAATAAAATAT-GTTGAACGGCGGGAATTAATCCTG-AATAGATTTTATTTAATTT
1 -AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTT
89402991 TAAAAAAATT
Statistics
Matches: 577, Mismatches: 95, Indels: 102
0.75 0.12 0.13
Matches are distributed among these distances:
73 31 0.05
74 6 0.01
75 1 0.00
76 1 0.00
77 51 0.09
78 3 0.01
79 5 0.01
80 26 0.05
81 6 0.01
82 8 0.01
83 19 0.03
84 136 0.24
85 49 0.08
86 67 0.12
87 58 0.10
88 109 0.19
89 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (85 bp):
AATAAAATCTCGTTAAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTTAATTTCTAAT
TTGGAAACAAAATAAAATTA
Found at i:89402749 original size:165 final size:163
Alignment explanation
Indices: 89402444--89402776 Score: 409
Period size: 165 Copynumber: 2.0 Consensus size: 163
89402434 AAAATGTAAT
* *
89402444 AAATCCATTGAATGGCGAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCTCATTTGG
1 AAATCCATTGAACGGCGAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCT-ATTTAG
* * * * * * * * *
89402509 AAATAAAATCAGAATTTGAATAGAATTCGTTAAACGGTGGGAATAAATCTCGAAACAGATTTTAT
65 AAATAAAATCAAAAATGGAATAAAATCCGTTAAACGGCGGGAATAAATCACAAAACAAATTTTAT
* * *
89402574 TTTAATTTTAATACTAGTTTTGGAAATAAATTCA
130 TTTAATTTTAAAACTAGCTTTGGAAATAAAATCA
* * ** *
89402608 AAATCCATTGAACGGCGGGAATAAATCCCGAAATAGATTTTATTTTAGTTTTAATACTTGT-TTT
1 AAATCCATTGAACGGCGAGAATAAATCCCGAAACAGATTTTA-TTTAACTTTAAT--TTCTATTT
* *
89402672 AGAAATAAAA-CAAAAAATGGAATAAAATCCGTTGAACGGCGGGAATAAATCACAAAATAAATTT
63 AGAAATAAAATC-AAAAATGGAATAAAATCCGTTAAACGGCGGGAATAAATCACAAAACAAATTT
*
89402736 TATTTTAATTTTAAAACTCGCTTTGGAAATAAAATCA
127 TATTTTAATTTTAAAACTAGCTTTGGAAATAAAATCA
89402773 AAAT
1 AAAT
89402777 TGGAATAAAA
Statistics
Matches: 143, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
164 40 0.28
165 100 0.70
167 3 0.02
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (163 bp):
AAATCCATTGAACGGCGAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCTATTTAGA
AATAAAATCAAAAATGGAATAAAATCCGTTAAACGGCGGGAATAAATCACAAAACAAATTTTATT
TTAATTTTAAAACTAGCTTTGGAAATAAAATCA
Found at i:89403173 original size:16 final size:16
Alignment explanation
Indices: 89403135--89403173 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
89403125 ATAAACACAT
*
89403135 ATTTATATATAGAATA
1 ATTTATAAATAGAATA
**
89403151 AAATATAAATAGAATA
1 ATTTATAAATAGAATA
89403167 ATTTATA
1 ATTTATA
89403174 TTTAAATTTT
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTTATAAATAGAATA
Found at i:89407051 original size:22 final size:22
Alignment explanation
Indices: 89407008--89407055 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
89406998 AAAAATTAAA
* *
89407008 ATCAACAAACTATCGATTCCCT
1 ATCAAAAAACTATCGATGCCCT
* *
89407030 ATCAAAAAAGTATTGATGCCCT
1 ATCAAAAAACTATCGATGCCCT
89407052 ATCA
1 ATCA
89407056 GAGCTACTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (22 bp):
ATCAAAAAACTATCGATGCCCT
Found at i:89410423 original size:14 final size:14
Alignment explanation
Indices: 89410400--89410430 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
89410390 AGTACAATAT
*
89410400 TTTTTGGAAAATGA
1 TTTTTAGAAAATGA
89410414 TTTTTAGAAAATGA
1 TTTTTAGAAAATGA
89410428 TTT
1 TTT
89410431 ACTTTTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.48
Consensus pattern (14 bp):
TTTTTAGAAAATGA
Found at i:89410444 original size:19 final size:19
Alignment explanation
Indices: 89410422--89410459 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
89410412 GATTTTTAGA
89410422 AAATGATTTACTTTTCTAG
1 AAATGATTTACTTTTCTAG
89410441 AAATGATTTACTTTTCTAG
1 AAATGATTTACTTTTCTAG
89410460 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTAG
Found at i:89421438 original size:16 final size:17
Alignment explanation
Indices: 89421398--89421438 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
89421388 ATAAATAAAC
* *
89421398 AAATAAATAAATGACTA
1 AAATAAACAAATGACGA
89421415 AAAT-AACAAATG-CGA
1 AAATAAACAAATGACGA
89421430 AAATAAACA
1 AAATAAACA
89421439 GGGACCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 6 0.29
16 11 0.52
17 4 0.19
ACGTcount: A:0.66, C:0.10, G:0.07, T:0.17
Consensus pattern (17 bp):
AAATAAACAAATGACGA
Found at i:89425699 original size:26 final size:24
Alignment explanation
Indices: 89425655--89425702 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
89425645 ATTTGTTTTA
*
89425655 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
89425679 ATATTTGATTTATTATATTTTTAA
1 ATATTT-ATTT-TTATATTTTTAA
89425703 TTTTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 4 0.19
26 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:89437339 original size:17 final size:16
Alignment explanation
Indices: 89437307--89437340 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
89437297 AAATTTAGGT
*
89437307 AAAAAATTAAACCTAA
1 AAAAAATTAAAACTAA
89437323 AAAAAATTAAATACTAA
1 AAAAAATTAAA-ACTAA
89437340 A
1 A
89437341 CTATTCAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAAATTAAAACTAA
Found at i:89438514 original size:14 final size:15
Alignment explanation
Indices: 89438482--89438515 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
89438472 ATATTATTAT
*
89438482 TATTTATCTAATTTT
1 TATTTATCTAATTTA
89438497 TATTTATC-AATTTA
1 TATTTATCTAATTTA
89438511 TATTT
1 TATTT
89438516 CTACTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTTATCTAATTTA
Found at i:89438699 original size:3 final size:3
Alignment explanation
Indices: 89438691--89438725 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
89438681 TTTAAAACTT
89438691 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
89438726 TTCCTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:89438781 original size:18 final size:17
Alignment explanation
Indices: 89438754--89438819 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 17
89438744 TATTCATTTT
*
89438754 ATTTCCATTTTTTTACTA
1 ATTTCTATTTTTTTA-TA
*
89438772 ATTTCTATTTTATTTATTT
1 ATTTCTATTTT-TTTA-TA
* *
89438791 ATTTCAGATTTTTATATA
1 ATTTC-TATTTTTTTATA
*
89438809 ATATCTATTTT
1 ATTTCTATTTT
89438820 CAACTCTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
17 5 0.13
18 15 0.39
19 13 0.34
20 5 0.13
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (17 bp):
ATTTCTATTTTTTTATA
Found at i:89438786 original size:23 final size:22
Alignment explanation
Indices: 89438730--89438791 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
89438720 ATTATTTTCC
* *
89438730 TTTA-TTTATTTATTTATTCAT
1 TTTATTTTATTTATTTACTAAT
* *
89438751 TTTATTTCCATTTTTTTACTAAT
1 TTTATTT-TATTTATTTACTAAT
89438774 TTCTATTTTATTTATTTA
1 TT-TATTTTATTTATTTA
89438792 TTTCAGATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
21 4 0.12
22 2 0.06
23 21 0.66
24 5 0.16
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTATTTTATTTATTTACTAAT
Found at i:89438819 original size:37 final size:38
Alignment explanation
Indices: 89438742--89438819 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 38
89438732 TATTTATTTA
* *
89438742 TTTATTCATTTTATTTCCATTTTTTTACTAATTTCTAT
1 TTTATTCATTTTATTTCCATTTTTATACTAATATCTAT
* *
89438780 TTTATTTA-TTTATTTCAGATTTTTATA-TAATATCTAT
1 TTTATTCATTTTATTTC-CATTTTTATACTAATATCTAT
89438817 TTT
1 TTT
89438820 CAACTCTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 20 0.57
38 15 0.43
ACGTcount: A:0.24, C:0.09, G:0.01, T:0.65
Consensus pattern (38 bp):
TTTATTCATTTTATTTCCATTTTTATACTAATATCTAT
Found at i:89439717 original size:14 final size:14
Alignment explanation
Indices: 89439698--89439726 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
89439688 GCTGATATTT
89439698 ACATTTTCTCTTTC
1 ACATTTTCTCTTTC
89439712 ACATTTTCTCTTTC
1 ACATTTTCTCTTTC
89439726 A
1 A
89439727 AAGTTCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.55
Consensus pattern (14 bp):
ACATTTTCTCTTTC
Found at i:89439863 original size:8 final size:8
Alignment explanation
Indices: 89439850--89439877 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
89439840 TTTAATGATT
89439850 ATATTTAA
1 ATATTTAA
89439858 ATATTTAA
1 ATATTTAA
89439866 ATATTTAA
1 ATATTTAA
89439874 ATAT
1 ATAT
89439878 AGTTTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATTTAA
Found at i:89442034 original size:163 final size:163
Alignment explanation
Indices: 89441764--89442091 Score: 656
Period size: 163 Copynumber: 2.0 Consensus size: 163
89441754 TAAATAGGTG
89441764 CGGAAATTTGAGTAGACTTCCAAAGTCTATTCATAAGCTTCAGAGCTTGCTGACATTGAGATTAC
1 CGGAAATTTGAGTAGACTTCCAAAGTCTATTCATAAGCTTCAGAGCTTGCTGACATTGAGATTAC
89441829 TTTATCTTCCAAAGATTCAAATTCGTGACCAACTGCAAAGAATCGTCAATCTCAAATTTCTAGAG
66 TTTATCTTCCAAAGATTCAAATTCGTGACCAACTGCAAAGAATCGTCAATCTCAAATTTCTAGAG
89441894 ATAACTACGGCTGACACGCAATTAAGGGAGATT
131 ATAACTACGGCTGACACGCAATTAAGGGAGATT
89441927 CGGAAATTTGAGTAGACTTCCAAAGTCTATTCATAAGCTTCAGAGCTTGCTGACATTGAGATTAC
1 CGGAAATTTGAGTAGACTTCCAAAGTCTATTCATAAGCTTCAGAGCTTGCTGACATTGAGATTAC
89441992 TTTATCTTCCAAAGATTCAAATTCGTGACCAACTGCAAAGAATCGTCAATCTCAAATTTCTAGAG
66 TTTATCTTCCAAAGATTCAAATTCGTGACCAACTGCAAAGAATCGTCAATCTCAAATTTCTAGAG
89442057 ATAACTACGGCTGACACGCAATTAAGGGAGATT
131 ATAACTACGGCTGACACGCAATTAAGGGAGATT
89442090 CG
1 CG
89442092 ACCTAGTAAT
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
163 165 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (163 bp):
CGGAAATTTGAGTAGACTTCCAAAGTCTATTCATAAGCTTCAGAGCTTGCTGACATTGAGATTAC
TTTATCTTCCAAAGATTCAAATTCGTGACCAACTGCAAAGAATCGTCAATCTCAAATTTCTAGAG
ATAACTACGGCTGACACGCAATTAAGGGAGATT
Found at i:89445292 original size:10 final size:9
Alignment explanation
Indices: 89445278--89445354 Score: 68
Period size: 10 Copynumber: 8.4 Consensus size: 9
89445268 ATTTTTCAAA
89445278 TTTTATAAT
1 TTTTATAAT
89445287 ATTTTAT-AT
1 -TTTTATAAT
*
89445296 TTTAATAAT
1 TTTTATAAT
*
89445305 TTATATAAT
1 TTTTATAAT
*
89445314 TTTT-TATT
1 TTTTATAAT
89445322 TTTTATAACT
1 TTTTATAA-T
*
89445332 TTTAATAAT
1 TTTTATAAT
*
89445341 TTCTAATAAT
1 TT-TTATAAT
89445351 TTTT
1 TTTT
89445355 TTCAAAATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
8 12 0.22
9 20 0.36
10 23 0.42
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:89445311 original size:17 final size:18
Alignment explanation
Indices: 89445276--89445316 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
89445266 GTATTTTTCA
*
89445276 AATTTTATAATATTTTAT
1 AATTTTATAATATTATAT
89445294 -ATTTTAATAAT-TTATAT
1 AATTTT-ATAATATTATAT
89445311 AATTTT
1 AATTTT
89445317 TTATTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
AATTTTATAATATTATAT
Found at i:89445319 original size:27 final size:25
Alignment explanation
Indices: 89445267--89445342 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 25
89445257 ATAAAAGTGG
* *
89445267 TATTTTTCA-AATTTTATAATATTT
1 TATTTTTAATAATTTTATAATTTTT
89445291 TATATTTTAATAATTTATATAATTTTT
1 TAT-TTTTAATAATTT-TATAATTTTT
*
89445318 TATTTTTTATAACTTTTAATAATTT
1 TATTTTTAATAA-TTTT-ATAATTT
89445343 CTAATAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
24 3 0.07
25 5 0.11
26 14 0.32
27 22 0.50
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (25 bp):
TATTTTTAATAATTTTATAATTTTT
Found at i:89445337 original size:36 final size:35
Alignment explanation
Indices: 89445288--89445355 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
89445278 TTTTATAATA
89445288 TTTTATATTTTAATAATTTAT-ATAATTTTTTATT
1 TTTTATATTTTAATAATTTATAATAATTTTTTATT
*
89445322 TTTTATAACTTTTAATAATTTCTAATAATTTTTT
1 TTTTAT-A-TTTTAATAATTTATAATAATTTTTT
89445356 TCAAAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 6 0.20
35 1 0.03
36 13 0.43
37 10 0.33
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (35 bp):
TTTTATATTTTAATAATTTATAATAATTTTTTATT
Found at i:89445898 original size:28 final size:28
Alignment explanation
Indices: 89445862--89445930 Score: 88
Period size: 29 Copynumber: 2.5 Consensus size: 28
89445852 AAATGTTTAA
*
89445862 AAAAACAATAGAA-CCTCATAAAATAATT
1 AAAAACAATA-AATCCTCACAAAATAATT
*
89445890 AAAAACAATTAAATCCTCACAACATAATT
1 AAAAACAA-TAAATCCTCACAAAATAATT
89445919 AAAAA-AATAAAT
1 AAAAACAATAAAT
89445931 TAATCCCTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
27 5 0.14
28 12 0.32
29 20 0.54
ACGTcount: A:0.62, C:0.14, G:0.01, T:0.22
Consensus pattern (28 bp):
AAAAACAATAAATCCTCACAAAATAATT
Found at i:89446632 original size:22 final size:22
Alignment explanation
Indices: 89446604--89446646 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
89446594 ACTACTACTG
89446604 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
89446626 TAGGAATATTTTGTAGATATT
1 TAGGAATATTCTGTAAATATT
89446647 CTTTTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:89451899 original size:17 final size:16
Alignment explanation
Indices: 89451877--89451916 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
89451867 ATTAAGGTGC
*
89451877 TTTTTATTTCTATTTTA
1 TTTTTATTTAT-TTTTA
89451894 TTTTTATTTATTTTTA
1 TTTTTATTTATTTTTA
89451910 TCTTTTA
1 T-TTTTA
89451917 GTTCGAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTATTTATTTTTA
Found at i:89452992 original size:25 final size:25
Alignment explanation
Indices: 89452964--89453136 Score: 84
Period size: 25 Copynumber: 6.8 Consensus size: 25
89452954 TTTTAAACTC
89452964 TTTTTTATATATTATCTATTTAAAA
1 TTTTTTATATATTATCTATTTAAAA
* * * * *
89452989 -TTTTTATATGTTATTTAGTTATAC
1 TTTTTTATATATTATCTATTTAAAA
* * *
89453013 TATTTTATATGTTAATC-GTTTAAAA
1 TTTTTTATATATT-ATCTATTTAAAA
*
89453038 CTCATTTTTAT-TATTATTTACTTT-AAA
1 -T--TTTTTATATATTATCTA-TTTAAAA
** * *
89453065 CCTTTCATATATTATTTATTTTAAAA
1 TTTTTTATATATTATCTA-TTTAAAA
* * *
89453091 TATTTTTATATATTCTCTATTTTAGA
1 T-TTTTTATATATTATCTATTTAAAA
* *
89453117 TTATTTCATATGTTATCTAT
1 TT-TTTTATATATTATCTAT
89453137 CCGAAATTTT
Statistics
Matches: 108, Mismatches: 29, Indels: 21
0.68 0.18 0.13
Matches are distributed among these distances:
24 24 0.22
25 28 0.26
26 28 0.26
27 19 0.18
28 9 0.08
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (25 bp):
TTTTTTATATATTATCTATTTAAAA
Found at i:89453062 original size:28 final size:29
Alignment explanation
Indices: 89453031--89453104 Score: 81
Period size: 27 Copynumber: 2.8 Consensus size: 29
89453021 ATGTTAATCG
89453031 TTTAAAACTCATTTTTAT-TATTATTTAC
1 TTTAAAACTCATTTTTATATATTATTTAC
* *
89453059 TTT-AAAC-C--TTTCATATATTATTTAT
1 TTTAAAACTCATTTTTATATATTATTTAC
89453084 TTTAAAA-T-ATTTTTATATATT
1 TTTAAAACTCATTTTTATATATT
89453105 CTCTATTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
24 5 0.13
25 12 0.32
26 4 0.11
27 14 0.37
28 3 0.08
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (29 bp):
TTTAAAACTCATTTTTATATATTATTTAC
Found at i:89459364 original size:14 final size:14
Alignment explanation
Indices: 89459345--89459371 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
89459335 TATTAAAGTA
89459345 ATAATTAAGAACAC
1 ATAATTAAGAACAC
89459359 ATAATTAAGAACA
1 ATAATTAAGAACA
89459372 AATCAAGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:89464955 original size:46 final size:49
Alignment explanation
Indices: 89464849--89464964 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 49
89464839 TGTCTTCGAC
** * *
89464849 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATCTAAT
* * *
89464899 ATGGGCTTACATGGCTCATTCTTGTCTCCAAAGCC-ATATAT-T-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
89464945 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
89464965 TATGTCCTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 22 0.38
47 1 0.02
48 6 0.10
50 29 0.50
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:89469967 original size:33 final size:33
Alignment explanation
Indices: 89469924--89470085 Score: 175
Period size: 33 Copynumber: 4.9 Consensus size: 33
89469914 TCTTTCTGAG
* *
89469924 TGGTACACACAAAGTATACCTTTCCTTTTCGTA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
89469957 TGGTATACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
* * *
89469990 TGGCATACATAAAGTATACATTTCCTTTTCA-A
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
* * * ** *
89470022 -GTGTACACACAAAGTGTACATAACCTTTTCATG
1 TG-GTATACACAAAGTATACCTTTCCTTTTCATA
* **
89470055 TGGTATAAACAAAGTATACCTAACCTTTTCA
1 TGGTATACACAAAGTATACCTTTCCTTTTCA
89470086 CATTTGATAG
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
31 1 0.01
32 24 0.22
33 84 0.76
34 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (33 bp):
TGGTATACACAAAGTATACCTTTCCTTTTCATA
Found at i:89470069 original size:65 final size:66
Alignment explanation
Indices: 89469923--89470073 Score: 171
Period size: 65 Copynumber: 2.3 Consensus size: 66
89469913 TTCTTTCTGA
* * * * * **
89469923 GTGGTACACACAAAGTATACCTTTCCTTTTCGTATGGTATACACAAAGTATACCTTTCCTTTTCA
1 GTGGTATACACAAAGTATACATTTCCTTTTCGAATGGTACACACAAAGTATACATAACCTTTTCA
89469988 T
66 T
* * * *
89469989 ATGGCATACATAAAGTATACATTTCCTTTTC-AA-GTGTACACACAAAGTGTACATAACCTTTTC
1 GTGGTATACACAAAGTATACATTTCCTTTTCGAATG-GTACACACAAAGTATACATAACCTTTTC
89470052 AT
65 AT
*
89470054 GTGGTATAAACAAAGTATAC
1 GTGGTATACACAAAGTATAC
89470074 CTAACCTTTT
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
64 1 0.01
65 42 0.61
66 26 0.38
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (66 bp):
GTGGTATACACAAAGTATACATTTCCTTTTCGAATGGTACACACAAAGTATACATAACCTTTTCA
T
Found at i:89470120 original size:29 final size:29
Alignment explanation
Indices: 89470078--89470175 Score: 178
Period size: 29 Copynumber: 3.4 Consensus size: 29
89470068 GTATACCTAA
89470078 CCTTTTCACATTTGATAGCCAAAGCTATC
1 CCTTTTCACATTTGATAGCCAAAGCTATC
89470107 CCTTTTCACATTTGATAGCCAAAGCTATC
1 CCTTTTCACATTTGATAGCCAAAGCTATC
* *
89470136 CCTTTTCACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTTGATAGCCAAAGCTATC
89470165 CCTTTTCACAT
1 CCTTTTCACAT
89470176 GGTACACACA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.35
Consensus pattern (29 bp):
CCTTTTCACATTTGATAGCCAAAGCTATC
Done.