Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 274 of 356
Found at i:89786427 original size:78 final size:78
Alignment explanation
Indices: 89786298--89786467 Score: 277
Period size: 78 Copynumber: 2.2 Consensus size: 78
89786288 GGTCTTTAAC
* *
89786298 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGCTT
1 CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGCCT
*
89786363 GCAGATCTCATGT
66 GCAGACCTCATGT
* * *
89786376 CCGGAAATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCTAGCATATAGCCT
1 CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGCCT
89786441 GCAGACCTCATGT
66 GCAGACCTCATGT
89786454 CCGGATATATTTTC
1 CCGGATAT-TTTTC
89786468 AATCTCATAC
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
78 79 0.94
79 5 0.06
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (78 bp):
CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGCCT
GCAGACCTCATGT
Found at i:89787485 original size:14 final size:14
Alignment explanation
Indices: 89787466--89787494 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
89787456 TAACTAACAT
89787466 AGTCTCTTAGATTC
1 AGTCTCTTAGATTC
89787480 AGTCTCTTAGATTC
1 AGTCTCTTAGATTC
89787494 A
1 A
89787495 ATATAATCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (14 bp):
AGTCTCTTAGATTC
Found at i:89788939 original size:9 final size:9
Alignment explanation
Indices: 89788916--89789043 Score: 96
Period size: 9 Copynumber: 13.6 Consensus size: 9
89788906 ATTGATCATT
*
89788916 ACTTAAATA
1 ACTTACATA
*
89788925 AATTACATA
1 ACTTACATA
89788934 ACTTACATA
1 ACTTACATA
* *
89788943 ACTCATATA
1 ACTTACATA
*
89788952 ACTTGA-ACA
1 ACTT-ACATA
*
89788961 ATTTACATAACA
1 ACTTACAT---A
89788973 ACTTACATA
1 ACTTACATA
*
89788982 ACTCACATA
1 ACTTACATA
89788991 ACTTACATA
1 ACTTACATA
*
89789000 ATTTACATA
1 ACTTACATA
*
89789009 ACTCACATA
1 ACTTACATA
*
89789018 ACGTACATAACA
1 ACTTACAT---A
89789030 ACTTACATA
1 ACTTACATA
89789039 ACTTA
1 ACTTA
89789044 ACTAATACAT
Statistics
Matches: 93, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
8 1 0.01
9 75 0.81
10 1 0.01
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (9 bp):
ACTTACATA
Found at i:89788980 original size:39 final size:39
Alignment explanation
Indices: 89788933--89789010 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
89788923 TAAATTACAT
*
89788933 AACTTACATAACTCATATAACTTGA-ACAATTTACATAAC
1 AACTTACATAACTCACATAACTT-ACACAATTTACATAAC
*
89788972 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACACAATTTACATAAC
89789011 TCACATAACG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.03
39 35 0.97
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACACAATTTACATAAC
Found at i:89789010 original size:57 final size:57
Alignment explanation
Indices: 89788929--89789041 Score: 147
Period size: 57 Copynumber: 2.0 Consensus size: 57
89788919 TAAATAAATT
* * **
89788929 ACATAACTTACATAACTCATATAACTTGA-ACAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAAC-TCACACAACGTACATAACAACTTACATAACTC
* * *
89788986 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACACAACGTACATAACAACTTACATAACT
89789042 TAACTAATAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
56 2 0.04
57 46 0.96
ACGTcount: A:0.46, C:0.23, G:0.02, T:0.29
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACACAACGTACATAACAACTTACATAACTC
Found at i:89793638 original size:39 final size:39
Alignment explanation
Indices: 89793581--89793699 Score: 193
Period size: 39 Copynumber: 3.1 Consensus size: 39
89793571 TTATATTACT
* * *
89793581 AGCACAAAGCCTGTGGGACTTTAGCTCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
* *
89793620 AGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
89793659 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
89793698 AG
1 AG
89793700 TGTCTTGCAT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
Found at i:89799291 original size:21 final size:21
Alignment explanation
Indices: 89799261--89799325 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
89799251 CTTAGAGCGA
89799261 AGGCAGCAGCGCGGGAGGCGG
1 AGGCAGCAGCGCGGGAGGCGG
*
89799282 AGGCAACAGCGCGGGAGGCGG
1 AGGCAGCAGCGCGGGAGGCGG
* *
89799303 AGGCCGCAGCGAGGGAGGCGG
1 AGGCAGCAGCGCGGGAGGCGG
89799324 AG
1 AG
89799326 CAGAACAGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.22, C:0.23, G:0.55, T:0.00
Consensus pattern (21 bp):
AGGCAGCAGCGCGGGAGGCGG
Found at i:89799742 original size:43 final size:44
Alignment explanation
Indices: 89799656--89799745 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 44
89799646 TTTAGTGGCA
* *
89799656 TTTTTATAAAAAGTGCCGCTAAAAGTCTCAATCTTTAGTGGCGT
1 TTTTTATAAAAAGCGCCGCTAAAAGTCTCAATCTTTAGCGGCGT
**
89799700 TTTTTAT-AAAAGCGCCGCTAAAAGTC-CTGGTCTTTAGCGGCGT
1 TTTTTATAAAAAGCGCCGCTAAAAGTCTC-AATCTTTAGCGGCGT
89799743 TTT
1 TTT
89799746 CTTTTAAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
42 1 0.02
43 33 0.80
44 7 0.17
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (44 bp):
TTTTTATAAAAAGCGCCGCTAAAAGTCTCAATCTTTAGCGGCGT
Found at i:89812739 original size:43 final size:43
Alignment explanation
Indices: 89812663--89812796 Score: 180
Period size: 43 Copynumber: 3.1 Consensus size: 43
89812653 ATCACCAGCA
* * * *
89812663 CGAAGCCTAATATTAAGTCACTGGTATTATAGCCTGCTAGGCT
1 CGAAGCCCAATATTAACTCACCGGCATTATAGCCTGCTAGGCT
* *
89812706 CGAAGCCCAATATTAACTCACCAGCATTGTAGCCTGCT-GGACT
1 CGAAGCCCAATATTAACTCACCGGCATTATAGCCTGCTAGG-CT
* *
89812749 CGAAGCCCGATATTAACTCACCGGCATTATAGCCTGTTAGGCT
1 CGAAGCCCAATATTAACTCACCGGCATTATAGCCTGCTAGGCT
89812792 CGAAG
1 CGAAG
89812797 GCTCGAATAG
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 2 0.03
43 75 0.95
44 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (43 bp):
CGAAGCCCAATATTAACTCACCGGCATTATAGCCTGCTAGGCT
Found at i:89818548 original size:40 final size:40
Alignment explanation
Indices: 89818504--89818765 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
89818494 GCTCCTCGTT
* *
89818504 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* *
89818544 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
89818584 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
89818623 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
89818662 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
89818701 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
89818742 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
89818766 CATCATTCAA
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 127 0.63
40 63 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:89830655 original size:20 final size:19
Alignment explanation
Indices: 89830620--89830674 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
89830610 ATCTTGGTTC
89830620 TTTTTTTATTTTTATTTAG
1 TTTTTTTATTTTTATTTAG
* **
89830639 TTTTTTTCTTTTGTATTTTC
1 TTTTTTTATTTT-TATTTAG
*
89830659 TTTTATT-TTTTTATTT
1 TTTTTTTATTTTTATTT
89830675 CTCTTCGCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 5 0.16
19 15 0.48
20 11 0.35
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.82
Consensus pattern (19 bp):
TTTTTTTATTTTTATTTAG
Found at i:89830655 original size:26 final size:25
Alignment explanation
Indices: 89830621--89830670 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
89830611 TCTTGGTTCT
*
89830621 TTTTTTATTTT-TATTTAGTTTTTTTC
1 TTTTGTATTTTCT-TTTA-TTTTTTTC
89830647 TTTTGTATTTTCTTTTATTTTTTT
1 TTTTGTATTTTCTTTTATTTTTTT
89830671 ATTTCTCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 14 0.64
27 1 0.05
ACGTcount: A:0.10, C:0.04, G:0.04, T:0.82
Consensus pattern (25 bp):
TTTTGTATTTTCTTTTATTTTTTTC
Found at i:89831612 original size:3 final size:3
Alignment explanation
Indices: 89831590--89831662 Score: 83
Period size: 3 Copynumber: 23.3 Consensus size: 3
89831580 TTTTTATTTA
* * * *
89831590 TAT TAT TGT TAG TAT CAT TAT TAT TAT TAT TAT CTCCAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT
89831638 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
89831663 CTCTTGTTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
3 55 0.93
4 1 0.02
5 1 0.02
6 2 0.03
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:89831701 original size:20 final size:19
Alignment explanation
Indices: 89831664--89831715 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
89831654 ATTATTATTC
89831664 TCTTGTTATA-T-TACTAT
1 TCTTGTTATATTATACTAT
89831681 TCTTGTTATATTATCACTAT
1 TCTTGTTATATTAT-ACTAT
* *
89831701 TTTTCTTACTATTAT
1 TCTTGTTA-TATTAT
89831716 TATTACTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 1 0.03
19 1 0.03
20 11 0.38
21 6 0.21
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.60
Consensus pattern (19 bp):
TCTTGTTATATTATACTAT
Found at i:89832031 original size:15 final size:15
Alignment explanation
Indices: 89832011--89832041 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
89832001 TATTATTTTC
89832011 TATTTATTACTATTA
1 TATTTATTACTATTA
89832026 TATTTATTACTATTA
1 TATTTATTACTATTA
89832041 T
1 T
89832042 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:89832033 original size:9 final size:9
Alignment explanation
Indices: 89831981--89832043 Score: 53
Period size: 9 Copynumber: 7.2 Consensus size: 9
89831971 TATTAACATA
89831981 TACTATTAT
1 TACTATTAT
* *
89831990 TATTAAT-T
1 TACTATTAT
89831998 TACTATTATT
1 TACTATTA-T
*
89832008 TTCTATTTAT
1 TACTA-TTAT
89832018 TACTATTA-
1 TACTATTAT
89832026 TA-T-TTAT
1 TACTATTAT
89832033 TACTATTAT
1 TACTATTAT
89832042 TA
1 TA
89832044 ATATATATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
6 3 0.07
7 3 0.07
8 9 0.21
9 14 0.33
10 10 0.24
11 3 0.07
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (9 bp):
TACTATTAT
Found at i:89832140 original size:3 final size:3
Alignment explanation
Indices: 89832125--89832178 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
89832115 CCCACTTAGC
* * * * *
89832125 TAT TAT TAC TAT TAT TAT TTT TAC TAT TAT AAT TAT TAT TAT TCT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
89832172 TAT TAT T
1 TAT TAT T
89832179 CTCTTACATT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:89834100 original size:19 final size:20
Alignment explanation
Indices: 89834060--89834103 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
89834050 CGTTTCTTTG
* *
89834060 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
89834079 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
89834098 GCATTA
1 GCATTA
89834104 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:89838280 original size:46 final size:46
Alignment explanation
Indices: 89838220--89838825 Score: 241
Period size: 46 Copynumber: 13.6 Consensus size: 46
89838210 GCAGAGCTGG
** * * *
89838220 TTGAAGATATCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
* * * * * * *
89838266 TCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACA
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
** ** *
89838309 TTGAAGCCGATA-ACTCTAT--CTCCCTGTATCTGGCAGTGGAA-TAGA
1 TTGAAGATGGCAGA-TCT-TGCCTCCCTGTATCTGGCAG-CGAAGTAGA
* * * *
89838354 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
* * * * * *
89838400 TCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTA-A
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
** ** *
89838442 TTGAAGCCGATA-ACTCTAT--CTCCCTGTATCTGGCAGTGGAA-TAGA
1 TTGAAGATGGCAGA-TCT-TGCCTCCCTGTATCTGGCAG-CGAAGTAGA
* * * *
89838487 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
* * * * * *
89838533 -TGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACA
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
** ** *
89838575 TTGAAGCCGATA-ACTCTAT--CTCCCTGTATCTGG-AGTGGAA-TAGA
1 TTGAAGATGGCAGA-TCT-TGCCTCCCTGTATCTGGCAG-CGAAGTAGA
* * * *
89838619 TTGAATATTGCAGATCTTGCCTTCCTGTAT-TCGGCAGCGAAGCAGA
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCT-GGCAGCGAAGTAGA
* * * * * * *
89838665 TCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACA
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
** ** *
89838708 TTGAAGCCGATA-ACTCTAT--CTCCCTGTATCTGGCAGTGGAA-TAGA
1 TTGAAGATGGCAGA-TCT-TGCCTCCCTGTATCTGGCAG-CGAAGTAGA
* * * *
89838753 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGA
1 TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
* * *
89838799 TCGAAGATGGCAGATTTTACCTCCCTG
1 TTGAAGATGGCAGATCTTGCCTCCCTG
89838826 ACTACAGTGG
Statistics
Matches: 393, Mismatches: 122, Indels: 90
0.65 0.20 0.15
Matches are distributed among these distances:
41 8 0.02
42 43 0.11
43 58 0.15
44 35 0.09
45 97 0.25
46 152 0.39
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (46 bp):
TTGAAGATGGCAGATCTTGCCTCCCTGTATCTGGCAGCGAAGTAGA
Found at i:89838492 original size:45 final size:45
Alignment explanation
Indices: 89838297--89838758 Score: 129
Period size: 45 Copynumber: 10.4 Consensus size: 45
89838287 TCCCTGACTA
* * *
89838297 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAATAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
** * * * * *
89838342 CAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTATTTGG
1 CAGTGGAATAGATTGAAG-CCG-ATAACTCTACCTCCCTGTATCTGG
* * * ** ** * * *
89838388 CAG-CGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAA-TAGATTGAAGCCGATA-ACTCTACCTCCCTGTATCTGG
* *
89838431 CAGTGGAGTA-ATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAATAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
** * * * * *
89838475 CAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTATTTGG
1 CAGTGGAATAGATTGAAG-CCG-ATAACTCTACCTCCCTGTATCTGG
* * ** ** * * *
89838521 CAG-CGAAGCAGA-TGAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAA-TAGATTGAAGCCGATA-ACTCTACCTCCCTGTATCTGG
* * *
89838563 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAATAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
* * *
89838608 -AGTGGAATAGATTGAATATTGCAGAT--CT-TGCCTTCCTGTAT-TCGG
1 CAGTGGAATAGATTG-A-A--GCCGATAACTCTACCTCCCTGTATCT-GG
* * * ** ** * * *
89838653 CAG-CGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAA-TAGATTGAAGCCGATA-ACTCTACCTCCCTGTATCTGG
* * *
89838696 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAATAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
89838741 CAGTGGAATAGATTGAAG
1 CAGTGGAATAGATTGAAG
89838759 ATTGCAGATC
Statistics
Matches: 283, Mismatches: 98, Indels: 72
0.62 0.22 0.16
Matches are distributed among these distances:
41 11 0.04
42 38 0.13
43 31 0.11
44 37 0.13
45 82 0.29
46 71 0.25
47 8 0.03
48 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (45 bp):
CAGTGGAATAGATTGAAGCCGATAACTCTACCTCCCTGTATCTGG
Found at i:89838817 original size:134 final size:134
Alignment explanation
Indices: 89838220--89838887 Score: 1267
Period size: 134 Copynumber: 5.0 Consensus size: 134
89838210 GCAGAGCTGG
89838220 TTGAAGATAT-CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
89838284 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
65 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
89838349 ATAGA
130 ATAGA
89838354 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
89838419 CCTCCCTGACTACAGTGGAGTA-ATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
89838483 TAGA
131 TAGA
89838487 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGAT-GAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
89838551 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG-AGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
89838615 TAGA
131 TAGA
* *
89838619 TTGAATATTGCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
89838684 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
89838749 TAGA
131 TAGA
89838753 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
89838818 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTAT-T-GCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
89838881 TAGA
131 TAGA
89838885 TTG
1 TTG
89838888 CGGGTCGAAG
Statistics
Matches: 526, Mismatches: 4, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
132 111 0.21
133 203 0.39
134 212 0.40
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
TAGA
Found at i:89838935 original size:92 final size:94
Alignment explanation
Indices: 89838799--89838980 Score: 332
Period size: 92 Copynumber: 2.0 Consensus size: 94
89838789 GCGAAGCAGA
* *
89838799 TCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
1 TCGAAGACGGCAGACTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
89838864 CCTGTATT-GCAGTGGAATAGATTGCGGG
66 CCTGTATTAGCAGTGGAATAGATTGCGGG
89838892 TCGAAGACGGCAGACTTTACCT-CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
1 TCGAAGACGGCAGACTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
89838956 CCTGTATTAGCAGTGGAATAGATTG
66 CCTGTATTAGCAGTGGAATAGATTG
89838981 AAGATTGCAG
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
92 50 0.58
93 36 0.42
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (94 bp):
TCGAAGACGGCAGACTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
CCTGTATTAGCAGTGGAATAGATTGCGGG
Found at i:89839006 original size:225 final size:227
Alignment explanation
Indices: 89838662--89839222 Score: 767
Period size: 225 Copynumber: 2.5 Consensus size: 227
89838652 GCAGCGAAGC
89838662 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
89838727 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTAT-TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTCGGCAACG
* * ** * **
89838792 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTA-CAGT-GGAGTACATTG-AAGCCGATA
130 AAACAGATCGAAGATAGCAGATCCTACCTCCCT-A-TATCAGTAGGAATACATTGAAAAAC-A-A
* *
89838854 ACTCTATCTCCCTGTA-TT-GCAGTGGAATAGATTGC
191 ACTCTATCTCCCTGTATTTGGCAGTGGAACAGATTGA
* * * *
89838889 GGGTCGAAGACGGCAGACTTTACCT-CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
89838953 CTCCCTGTATTAGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTCGGCAACGA
66 CTCCCTGTATTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTCGGCAACGA
* * ** ** *
89839018 AATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAATGGATTGAAAAACAGACTCT
131 AACAGATCGAAGATAGCAGATCCTACCTCCCTATATCAGTAGGAATACATTGAAAAACAAACTCT
89839083 ATCTCCCTGTATTTGGCAGTGGAACAGATTGA
196 ATCTCCCTGTATTTGGCAGTGGAACAGATTGA
* * *
89839115 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATGACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
89839180 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATTTCAG-TCTT
66 CTCCCTGTA-TTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
89839223 ATCTCCCTAA
Statistics
Matches: 294, Mismatches: 33, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
223 2 0.01
224 19 0.06
225 89 0.30
226 87 0.30
227 70 0.24
228 27 0.09
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (227 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTCGGCAACGA
AACAGATCGAAGATAGCAGATCCTACCTCCCTATATCAGTAGGAATACATTGAAAAACAAACTCT
ATCTCCCTGTATTTGGCAGTGGAACAGATTGA
Found at i:89839536 original size:22 final size:22
Alignment explanation
Indices: 89839511--89839563 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
89839501 TAATACCAAA
89839511 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
89839533 CCCCATACCTCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
89839555 TCCCATACC
1 CCCCATACC
89839564 GTCTGACACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.53, G:0.04, T:0.13
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:89839873 original size:26 final size:25
Alignment explanation
Indices: 89839839--89839892 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
89839829 TCTTGGTTCT
*
89839839 TTTTTTATTTT-TATTTAGTTTTTTTC
1 TTTTGTATTTTCT-TTTA-TTTTTTTC
89839865 TTTTGTATTTTCTTTTATTTTTTTC
1 TTTTGTATTTTCTTTTATTTTTTTC
89839890 TTT
1 TTT
89839893 CTCTTCGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 11 0.42
26 14 0.54
27 1 0.04
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTGTATTTTCTTTTATTTTTTTC
Found at i:89839887 original size:12 final size:13
Alignment explanation
Indices: 89839835--89839892 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
89839825 GTGTTCTTGG
89839835 TTCTTTT-TTTATT
1 TTCTTTTATTT-TT
89839848 TT-TATTTAGTTTTT
1 TTCT-TTTA-TTTTT
* *
89839862 TTCTTTT-GTATT
1 TTCTTTTATTTTT
89839874 TTCTTTTATTTTT
1 TTCTTTTATTTTT
89839887 TTCTTT
1 TTCTTT
89839893 CTCTTCGCGA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
12 11 0.31
13 14 0.39
14 7 0.19
15 4 0.11
ACGTcount: A:0.09, C:0.07, G:0.03, T:0.81
Consensus pattern (13 bp):
TTCTTTTATTTTT
Found at i:89839888 original size:20 final size:19
Alignment explanation
Indices: 89839835--89839880 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
89839825 GTGTTCTTGG
89839835 TTCTTTTTTTATTTTTATT
1 TTCTTTTTTTATTTTTATT
** *
89839854 TAGTTTTTTTCTTTTGTATT
1 TTCTTTTTTTATTTT-TATT
89839874 TTCTTTT
1 TTCTTTT
89839881 ATTTTTTTCT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.80
Consensus pattern (19 bp):
TTCTTTTTTTATTTTTATT
Found at i:89840824 original size:3 final size:3
Alignment explanation
Indices: 89840802--89840871 Score: 77
Period size: 3 Copynumber: 22.3 Consensus size: 3
89840792 TTTTTATTTA
* * * *
89840802 TAT TAT TGT TAG TAT CAT TAT TAT TAT TAT TAT CTCCAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT
89840850 TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
89840872 CTCTTGTTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
3 52 0.93
4 1 0.02
5 1 0.02
6 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:89840910 original size:20 final size:19
Alignment explanation
Indices: 89840873--89840924 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
89840863 ATTATTATTC
89840873 TCTTGTTATA-T-TACTAT
1 TCTTGTTATATTATACTAT
89840890 TCTTGTTATATTATCACTAT
1 TCTTGTTATATTAT-ACTAT
* *
89840910 TTTTCTTACTATTAT
1 TCTTGTTA-TATTAT
89840925 TATTACTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 1 0.03
19 1 0.03
20 11 0.38
21 6 0.21
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.60
Consensus pattern (19 bp):
TCTTGTTATATTATACTAT
Found at i:89841241 original size:15 final size:15
Alignment explanation
Indices: 89841221--89841251 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
89841211 TATTATTTTC
89841221 TATTTATTACTATTA
1 TATTTATTACTATTA
89841236 TATTTATTACTATTA
1 TATTTATTACTATTA
89841251 T
1 T
89841252 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:89841350 original size:3 final size:3
Alignment explanation
Indices: 89841335--89841385 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
89841325 CCCACTTAGC
* * * * *
89841335 TAT TAT TAC TAT TAT TAT TTT TAC TAT TAT AAT TAT TAT TCT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
89841382 TAT T
1 TAT T
89841386 CTCTTACATT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:89841353 original size:15 final size:15
Alignment explanation
Indices: 89841335--89841385 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
89841325 CCCACTTAGC
89841335 TATTATTACTATTAT
1 TATTATTACTATTAT
*
89841350 TATTTTTACTATTAT
1 TATTATTACTATTAT
* * *
89841365 AATTATTATTCTT-T
1 TATTATTACTATTAT
89841379 TATTATT
1 TATTATT
89841386 CTCTTACATT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 7 0.23
15 23 0.77
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:89844862 original size:6 final size:6
Alignment explanation
Indices: 89844848--89844886 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
89844838 GTGATAATCT
*
89844848 AATACA AATATA AATATA AATATA AATATA AATATA AAT
1 AATATA AATATA AATATA AATATA AATATA AATATA AAT
89844887 TTATATTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (6 bp):
AATATA
Found at i:89847581 original size:23 final size:23
Alignment explanation
Indices: 89847555--89847602 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
89847545 GGTTGTGATT
89847555 AGCGAAGATATTGTGTTTGATGA
1 AGCGAAGATATTGTGTTTGATGA
89847578 AGCGAAGATATTGTGTTTGATGA
1 AGCGAAGATATTGTGTTTGATGA
89847601 AG
1 AG
89847603 AGAACACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.33
Consensus pattern (23 bp):
AGCGAAGATATTGTGTTTGATGA
Found at i:89853911 original size:90 final size:90
Alignment explanation
Indices: 89853758--89853933 Score: 289
Period size: 90 Copynumber: 2.0 Consensus size: 90
89853748 ATCTAGAGTT
89853758 AGTCTACTATGTAGGAAATTAAAATAAGAATAGAAGTGGGCAAAGACCACAGTCCAACTTCTATA
1 AGTCTACTATGTAGGAAATTAAAATAAGAATAGAAGTGGGCAAAGACCACAGTCCAACTTCTATA
*
89853823 ACCCCTCATGGCGAAACCATTTATC
66 ACCCCTCATGGCAAAACCATTTATC
* * ** *
89853848 AGTCTACTATGTAGGATATTAAAATCAGAATAGAAGTGGGCAGGGACCACAGTCTAACTTCTATA
1 AGTCTACTATGTAGGAAATTAAAATAAGAATAGAAGTGGGCAAAGACCACAGTCCAACTTCTATA
*
89853913 ACCCTTCATGGCAAAACCATT
66 ACCCCTCATGGCAAAACCATT
89853934 CTAACTTCTC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (90 bp):
AGTCTACTATGTAGGAAATTAAAATAAGAATAGAAGTGGGCAAAGACCACAGTCCAACTTCTATA
ACCCCTCATGGCAAAACCATTTATC
Found at i:89856786 original size:23 final size:23
Alignment explanation
Indices: 89856756--89856805 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
89856746 GAAAAGGAAC
*
89856756 AAAA-GTGAGATAATTTGGGTAT
1 AAAACGTGAGATAATTTGGGTAG
89856778 AAAACGTGAGATAATTTGGGTAG
1 AAAACGTGAGATAATTTGGGTAG
89856801 AAAAC
1 AAAAC
89856806 CAAATGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.44, C:0.04, G:0.26, T:0.26
Consensus pattern (23 bp):
AAAACGTGAGATAATTTGGGTAG
Found at i:89859509 original size:14 final size:14
Alignment explanation
Indices: 89859490--89859517 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
89859480 GATTGACAGA
89859490 TTTGTCTTTTAATT
1 TTTGTCTTTTAATT
89859504 TTTGTCTTTTAATT
1 TTTGTCTTTTAATT
89859518 CATTTTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (14 bp):
TTTGTCTTTTAATT
Found at i:89866317 original size:40 final size:40
Alignment explanation
Indices: 89866212--89866428 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
89866202 TGGATGATAA
* *
89866212 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-T
* *
89866252 CCCGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
89866291 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
89866331 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
89866371 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATAT
* *
89866411 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
89866429 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 50 0.31
40 112 0.69
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:89872040 original size:46 final size:46
Alignment explanation
Indices: 89871972--89872138 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 46
89871962 CCATTTGTGT
* * * *
89871972 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCACTG-TATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GACACTGAGACGAGA
*
89872018 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACACTGAGACGAGA
* * * * * *
89872064 GCTAGTGTAAGACATGTCTAGGATAAGCATCGAC-CTCGCGATAGATAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACACT-GAGA-CGA-GA
* *
89872112 GTTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
89872139 GCGTCAGTTT
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
45 6 0.06
46 69 0.69
47 2 0.02
48 23 0.23
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACACTGAGACGAGA
Found at i:89879674 original size:46 final size:45
Alignment explanation
Indices: 89879607--89879818 Score: 187
Period size: 46 Copynumber: 4.5 Consensus size: 45
89879597 TTTGTGTGCT
89879607 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACAGTATGAGAGCC
* * * *
89879653 AGTGTAAGATATGTTTGGGACATGCATCGACCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCAC-AG-TA-TGAGAGCC
* * * **
89879701 AGTATAAGACATGTCTGGGACATGCATCGGCATTGAG-ATGAGAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCA--CAGTATGAGAGCC
* * *
89879747 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCACG-ATAGACAACC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACA-GTAT-GAGAGCC
*
89879794 TAGTGTAAGACCTGTCTGGGACATG
1 -AGTGTAAGACATGTCTGGGACATG
89879819 GCGTCAGCTT
Statistics
Matches: 133, Mismatches: 22, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
45 4 0.03
46 62 0.47
47 8 0.06
48 57 0.43
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACAGTATGAGAGCC
Found at i:89879803 original size:94 final size:95
Alignment explanation
Indices: 89879605--89879818 Score: 258
Period size: 94 Copynumber: 2.3 Consensus size: 95
89879595 CATTTGTGTG
* *
89879605 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGATATGTTTG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCTG
***
89879670 GGACATGCATCGACCTCGAGATATTTAAGC
66 GGACATGCATCGACCTCGAGATAGACAAGC
* * * **
89879700 C-AGTATAAGACATGTCTGGGACATGCATC-GGCATTGAG-ATGAGAGTTAGTGTAAGACATGTC
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCA--CAGTATGAGAGCCAGTGTAAGACATGTC
*
89879762 TGGGACATGCATCGGCCTC-ACGATAGACAA-C
64 TGGGACATGCATCGACCTCGA-GATAGACAAGC
*
89879793 CTAGTGTAAGACCTGTCTGGGACATG
1 CTAGTGTAAGACATGTCTGGGACATG
89879819 GCGTCAGCTT
Statistics
Matches: 102, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
93 6 0.06
94 93 0.91
95 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCTG
GGACATGCATCGACCTCGAGATAGACAAGC
Found at i:89881136 original size:20 final size:20
Alignment explanation
Indices: 89881097--89881136 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
89881087 GTCATAATGA
89881097 CCACACGGGCATGTTGCCCTT
1 CCACACGGG-ATGTTGCCCTT
89881118 CCACACGGG-TGTGTGCCCT
1 CCACACGGGATGT-TGCCCT
89881137 ATTTCAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 6 0.33
21 9 0.50
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (20 bp):
CCACACGGGATGTTGCCCTT
Found at i:89885124 original size:67 final size:65
Alignment explanation
Indices: 89885036--89885229 Score: 203
Period size: 64 Copynumber: 3.0 Consensus size: 65
89885026 CTAGCCAGTT
* * * * *
89885036 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCAACCTAGCTACA
1 TATCCCGTAGCTCTCTTGTCTACATGGTGT--TACACATAGAACCACCCATGCAACCTAGCTACA
89885101 TA
64 TA
* * * * *
89885103 TATGCCGTAGCTCTCTTGTCTACATAGTG-TACACATAGTATCACCCATGCGACCTAGCTACATA
1 TATCCCGTAGCTCTCTTGTCTACATGGTGTTACACATAGAACCACCCATGCAACCTAGCTACATA
* * * * * * *
89885167 TATCCCGTAGCTCTCTTATCTATATGGTG-TACACATAGTATCACCCATACGACCTACCTACAT
1 TATCCCGTAGCTCTCTTGTCTACATGGTGTTACACATAGAACCACCCATGCAACCTAGCTACAT
89885230 CATAATGTCT
Statistics
Matches: 111, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
64 85 0.77
67 26 0.23
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.31
Consensus pattern (65 bp):
TATCCCGTAGCTCTCTTGTCTACATGGTGTTACACATAGAACCACCCATGCAACCTAGCTACATA
Found at i:89885168 original size:64 final size:64
Alignment explanation
Indices: 89885084--89885229 Score: 229
Period size: 64 Copynumber: 2.3 Consensus size: 64
89885074 TGGAACCACG
* * *
89885084 CATGCAACCTAGCTACATATATGCCGTAGCTCTCTTGTCTACATAGTGTACACATAGTATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTATCTACATAGTGTACACATAGTATCACC
* *
89885148 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTATCTATATGGTGTACACATAGTATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTATCTACATAGTGTACACATAGTATCACC
* *
89885212 CATACGACCTACCTACAT
1 CATGCGACCTAGCTACAT
89885230 CATAATGTCT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (64 bp):
CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTATCTACATAGTGTACACATAGTATCACC
Found at i:89893530 original size:23 final size:24
Alignment explanation
Indices: 89893497--89893547 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 24
89893487 TTTTTCTGTG
89893497 TATGTGTTTTAAGTTTTATTTTTC
1 TATGTGTTTTAAGTTTTATTTTTC
89893521 TATGTG-TTTAAGTTTTATTTTTC
1 TATGTGTTTTAAGTTTTATTTTTC
89893544 TATG
1 TATG
89893548 AATAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.18, C:0.04, G:0.14, T:0.65
Consensus pattern (24 bp):
TATGTGTTTTAAGTTTTATTTTTC
Found at i:89897224 original size:308 final size:314
Alignment explanation
Indices: 89896658--89897232 Score: 760
Period size: 308 Copynumber: 1.8 Consensus size: 314
89896648 CGAAATCGTT
* * *
89896658 CTGACTGTAACACCCCTATCCCGTATCCGTCGCCGGAATAGGTAAAGGGGCATTACCGGACTTGA
1 CTGACTGTAACACCCCTATCCCGTAACCATCGCCGGAATAAGTAAAGGGGCATTACCGGACTTGA
* *
89896723 AGCTCATATCCGAACAGTAAAAAATTTGAATATATATATATTTTTTAAAGAACGTTCCTTTAGGT
66 AGCTCATATCAGAACAGTAAAAAATTT--ATATATATATATTTTTTAAAGAACGATCCTTTAGGT
* * * * * * *
89896788 AAATACTAAAGACAGTCAGGGATACAATTTAACTGCTATAAGTACACATTCAAAAGATGCCATTT
129 AAACACTAAACACAGCCAGGGAAAAAATTAAACTGCTATAAGTAAACATTCAAAAGATGCCATTT
* * *
89896853 TCGCATGGCTTATATACATTAACCAAAATATTCTTCGGCCACTGGTCTATTCTTTACATGCCATA
194 TCGCATGGCTTATATACAATAACCAAAATATTCTTCGGCCACTAGTCTATTCTATACATGCCATA
89896918 AAATAATTCAAAACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTTG
259 AAATAATTCAAAACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTTG
89896974 CTGACTGTAACACCCCTATCCCGTAACCATCGCCGGAATAAGT-AAGGGGCATTACCGGACTTGT
1 CTGACTGTAACACCCCTATCCCGTAACCATCGCCGGAATAAGTAAAGGGGCATTACCGGACTTG-
* * * * * *
89897038 AA-CTCATGA-CAGAACGGT-AAAACTTT-T-T-T-TTTCTTTTTT-TAGATC-ATCCATTT-GG
65 AAGCTCAT-ATCAGAACAGTAAAAAATTTATATATATATATTTTTTAAAGAACGATCC-TTTAGG
*
89897093 ATAAACACTAAACACAGCCAGGGAAAAAATGTAAACTTCTATAAGTAAACATTCAAAAGATGCCA
128 -TAAACACTAAACACAGCCAGGGAAAAAAT-TAAACTGCTATAAGTAAACATTCAAAAGATGCCA
* * *
89897158 TTTTCGCATGGCTTATATGCAATAACCAAATTATTCTTTC-GCTACTAGTCTATTCTATACATGC
191 TTTTCGCATGGCTTATATACAATAACCAAAATATTC-TTCGGCCACTAGTCTATTCTATACATGC
*
89897222 CATAAGATAAT
255 CATAAAATAAT
89897233 CCAATCTCAT
Statistics
Matches: 227, Mismatches: 26, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
306 5 0.02
307 31 0.14
308 103 0.45
309 4 0.02
310 1 0.00
311 1 0.00
314 7 0.03
315 32 0.14
316 43 0.19
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (314 bp):
CTGACTGTAACACCCCTATCCCGTAACCATCGCCGGAATAAGTAAAGGGGCATTACCGGACTTGA
AGCTCATATCAGAACAGTAAAAAATTTATATATATATATTTTTTAAAGAACGATCCTTTAGGTAA
ACACTAAACACAGCCAGGGAAAAAATTAAACTGCTATAAGTAAACATTCAAAAGATGCCATTTTC
GCATGGCTTATATACAATAACCAAAATATTCTTCGGCCACTAGTCTATTCTATACATGCCATAAA
ATAATTCAAAACATAACAGTAACAAGCAGTGGATAGTGATAGTGTGACTAGTTG
Found at i:89898349 original size:47 final size:47
Alignment explanation
Indices: 89898275--89898428 Score: 254
Period size: 47 Copynumber: 3.3 Consensus size: 47
89898265 TCCTTCGGGA
*
89898275 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
89898322 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
89898369 CTTATCACATTTATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89898416 CTTATCACATATA
1 CTTATCACATATA
89898429 CATATCTTGT
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:89900297 original size:13 final size:13
Alignment explanation
Indices: 89900279--89900303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89900269 TACTAAATTT
89900279 TCATGGATTCAAA
1 TCATGGATTCAAA
89900292 TCATGGATTCAA
1 TCATGGATTCAA
89900304 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:89902247 original size:48 final size:48
Alignment explanation
Indices: 89901705--89902236 Score: 875
Period size: 48 Copynumber: 10.9 Consensus size: 48
89901695 CACAATATAC
* *
89901705 ACATATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATAA
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
89901753 ACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
89901801 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
89901849 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
89901897 ACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* *
89901945 ACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
89901993 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
89902041 ACATATCTCATATATATTTCACATTAGCCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATA--T----TT---CACACTAGCCATTCGGCTTTACCACATAT
*
89902098 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
89902146 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* *
89902194 ACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCA
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
89902237 TACACACATA
Statistics
Matches: 457, Mismatches: 18, Indels: 18
0.93 0.04 0.04
Matches are distributed among these distances:
48 408 0.89
50 1 0.00
51 2 0.00
54 2 0.00
55 1 0.00
57 43 0.09
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
Found at i:89905963 original size:40 final size:40
Alignment explanation
Indices: 89905919--89906105 Score: 275
Period size: 40 Copynumber: 4.7 Consensus size: 40
89905909 CCAACCCAAT
* * *
89905919 TGCCTCCGGGATTTAGCCCGGATATAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACAAA
* * *
89905959 TGCCTTCGGGACTTAACTCAGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACAAA
* * *
89905999 TGCCTTCGGGACTTAATCTGGATATAACAACCAGCACAGA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACAAA
*
89906039 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACAAA
*
89906079 TGCCTTCGGGAGTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGATATAA
89906106 TCCTCAATTG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACAAA
Found at i:89908213 original size:48 final size:49
Alignment explanation
Indices: 89908043--89908315 Score: 251
Period size: 49 Copynumber: 5.7 Consensus size: 49
89908033 ATATCTAAGT
* *
89908043 CGATGCCATGTCCCAGACAGGTCTTACACT-GACTTTCAAATATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAG-CTCTCATATATCGAGGC
* * * * *
89908092 TGATGCCATATCCCAGACAGGTCTTATACTAGCTCTCATCTATCG-GTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAG-GC
*
89908141 CGATGCCATGTCCCAGGA-AGGTCTTACACTAGCT-TGCATATCTCGAGGC
1 CGATGCCATGTCCCA-GACAGGTCTTACACTAGCTCT-CATATATCGAGGC
* * * * *
89908190 CAATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTAT-T-AATGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGC
* * * * *
89908236 CAATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAGA-AT-GTGGC
1 CGATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATATATCGAGGC
* *
89908284 CGATG-CATGTCCCAAACATGTCTTACACTAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGC
89908316 ACACATCCAT
Statistics
Matches: 185, Mismatches: 29, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
46 20 0.11
47 28 0.15
48 54 0.29
49 79 0.43
50 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGC
Found at i:89908256 original size:47 final size:46
Alignment explanation
Indices: 89908187--89908315 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 46
89908177 CATATCTCGA
* *
89908187 GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTC-GTAT-T
1 GGCCAATGCATGTCCCAAACATGTCTTACACTAGCTCTCAGAATGT
* *
89908231 AATGCCAATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAGAATGT
1 --GGCCAATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCAGAATGT
*
89908281 GGCCGATGCATGTCCCAAACATGTCTTACACTAGC
1 GGCCAATGCATGTCCCAAACATGTCTTACACTAGC
89908316 ACACATCCAT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
46 19 0.26
47 27 0.38
48 22 0.31
49 3 0.04
50 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (46 bp):
GGCCAATGCATGTCCCAAACATGTCTTACACTAGCTCTCAGAATGT
Found at i:89909550 original size:34 final size:34
Alignment explanation
Indices: 89909507--89909577 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
89909497 ATCTATTTAA
*
89909507 TACCTTCAGCTATTAGAATGTAACTTTTGCACTT
1 TACCTTCAGCTATTAGAATGCAACTTTTGCACTT
89909541 TACCTTCAGCTATTAGAATGCAACTTTTGCACTT
1 TACCTTCAGCTATTAGAATGCAACTTTTGCACTT
89909575 TAC
1 TAC
89909578 ATGATTTAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (34 bp):
TACCTTCAGCTATTAGAATGCAACTTTTGCACTT
Found at i:89910129 original size:44 final size:48
Alignment explanation
Indices: 89910011--89910135 Score: 150
Period size: 44 Copynumber: 2.6 Consensus size: 48
89910001 GGTTAAGATA
* * *
89910011 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGG
1 CCGACGCCATGTCCCAGACA-GGTCTTACACTGGC-TACATATAGCGAAG
* *
89910061 CCGATGCCATGTCCCAAACAGGTCTTACACTGGC-ACATA-A-C-AAG
1 CCGACGCCATGTCCCAGACAGGTCTTACACTGGCTACATATAGCGAAG
*
89910105 CTGACGCCATGTCCCAGACAGGTCTTACACT
1 CCGACGCCATGTCCCAGACAGGTCTTACACT
89910136 AGCTTGTATA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
44 30 0.43
45 1 0.01
46 1 0.01
47 4 0.06
49 14 0.20
50 19 0.28
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (48 bp):
CCGACGCCATGTCCCAGACAGGTCTTACACTGGCTACATATAGCGAAG
Found at i:89910211 original size:94 final size:94
Alignment explanation
Indices: 89910113--89910326 Score: 266
Period size: 94 Copynumber: 2.3 Consensus size: 94
89910103 AGCTGACGCC
* ** * * *
89910113 ATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGCTGAAGCATGTCCCAGTCATGTCT
1 ATGTCCCAGACATGTCTTACACTAGCTTAAACATCACGAGGCTGAAGCATATCCCAGACATGTCT
* * *
89910178 TACACTAGCTCTCGTCTCAACGCTGATGA
66 TACACTAGCTCTCATATCAACGCCGATGA
* ** *
89910207 ATGTCCCAGACATGTCTTACACTGGCTTAAACATCTTGAGGCTGATGCATATCCCAGACATGTCT
1 ATGTCCCAGACATGTCTTACACTAGCTTAAACATCACGAGGCTGAAGCATATCCCAGACATGTCT
**** *
89910272 TACACTAGCTCTCATATTGTGGCCGATGC
66 TACACTAGCTCTCATATCAACGCCGATGA
89910301 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
89910327 ACACATATCA
Statistics
Matches: 101, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
94 101 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
ATGTCCCAGACATGTCTTACACTAGCTTAAACATCACGAGGCTGAAGCATATCCCAGACATGTCT
TACACTAGCTCTCATATCAACGCCGATGA
Found at i:89910221 original size:46 final size:45
Alignment explanation
Indices: 89910013--89910326 Score: 245
Period size: 46 Copynumber: 6.7 Consensus size: 45
89910003 TTAAGATACC
* * *
89910013 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-TTCATAT--CAAGGCT
* * * * *
89910063 GATGCCATGTCCCAAACAGGTCTTACACTGGC-ACATAACAA-GCT
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTTCATATCAAGGCT
* * *
89910107 GACGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGCT
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTT-CATATCA--AGGCT
* * * * *
89910156 GAAGCATGTCCCAGTCATGTCTTACACTAGCTCTCGTCTCAACGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TCATATCAAGGCT
* * * **
89910202 GATGAATGTCCCAGACATGTCTTACACTGGCTTAAACATCTTGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTT---CATATCAAGGCT
* *** *
89910250 GATGCATATCCCAGACATGTCTTACACTAGCTCTCATATTGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TCATATCAAGGCT
89910296 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
89910327 ACACATATCA
Statistics
Matches: 220, Mismatches: 34, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
44 31 0.14
45 3 0.01
46 76 0.35
47 4 0.02
48 68 0.31
49 21 0.10
50 17 0.08
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTCATATCAAGGCT
Found at i:89915865 original size:13 final size:13
Alignment explanation
Indices: 89915847--89915879 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
89915837 GGTTGTTTAT
89915847 TAAACTAATTAAC
1 TAAACTAATTAAC
89915860 TAAACTAATTAAC
1 TAAACTAATTAAC
89915873 T-AACTAA
1 TAAACTAA
89915880 AGTAAAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:89918818 original size:6 final size:6
Alignment explanation
Indices: 89918809--89918841 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
89918799 AATAAAATTG
*
89918809 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
89918842 GATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:89923856 original size:13 final size:13
Alignment explanation
Indices: 89923838--89923870 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
89923828 GGTTGTTTAT
89923838 TAAACTAATTAAC
1 TAAACTAATTAAC
89923851 TAAACTAATTAAC
1 TAAACTAATTAAC
89923864 T-AACTAA
1 TAAACTAA
89923871 ACTAAAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:89930055 original size:35 final size:35
Alignment explanation
Indices: 89930009--89930079 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
89929999 TATCTCTAGA
*
89930009 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGCAATCTTCAAAGATAT
* *
89930044 GCTTGGCAAATATGGAAGGCGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGCAATCTTCAAAGATAT
89930079 G
1 G
89930080 TGATCCTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.27
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGCAATCTTCAAAGATAT
Found at i:89944441 original size:55 final size:55
Alignment explanation
Indices: 89944381--89944490 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
89944371 CTTAGTAAGT
89944381 TTGAGTAATGAAATCATGCACAACTGATGTATAGCATTCATATGACTAAACGAAC
1 TTGAGTAATGAAATCATGCACAACTGATGTATAGCATTCATATGACTAAACGAAC
89944436 TTGAGTAATGAAATCATGCACAACTGATGTATAGCATTCATATGACTAAACGAAC
1 TTGAGTAATGAAATCATGCACAACTGATGTATAGCATTCATATGACTAAACGAAC
89944491 AATCTCATAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (55 bp):
TTGAGTAATGAAATCATGCACAACTGATGTATAGCATTCATATGACTAAACGAAC
Found at i:89944803 original size:40 final size:40
Alignment explanation
Indices: 89944726--89944863 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
89944716 AAACCGAGTA
*
89944726 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCT-CAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCG-TACAAATG
*
89944765 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
* **
89944805 CCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
*
89944845 CCTTCGGAACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
89944864 TTATCATCCG
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 15 0.17
40 73 0.83
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
Found at i:89948836 original size:24 final size:24
Alignment explanation
Indices: 89948795--89948859 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
89948785 AGCGAGCCAT
*
89948795 TCCGGCGATGCCATCCCGACGGTGC
1 TCCGGTGA-GCCATCCCGACGGTGC
* *
89948820 TTCGGTGAGCCATCCCGGCGGTGC
1 TCCGGTGAGCCATCCCGACGGTGC
89948844 TCCGGTGAGCCATCCC
1 TCCGGTGAGCCATCCC
89948860 ATAATATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 30 0.83
25 6 0.17
ACGTcount: A:0.11, C:0.38, G:0.32, T:0.18
Consensus pattern (24 bp):
TCCGGTGAGCCATCCCGACGGTGC
Found at i:89949266 original size:43 final size:43
Alignment explanation
Indices: 89949171--89949998 Score: 814
Period size: 43 Copynumber: 19.4 Consensus size: 43
89949161 TGCCTCAGAT
** * * * * *
89949171 GTGCGGGAGTATCGGACACCATCGGCAAACTTGGCCAC-TGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCC-CTTGGTC
*
89949214 GTGCAGGAGCCTCGGGCACCATCGGTAA-CTGAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCT-AGGCCCTTGGTC
* * * *
89949257 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCATGATC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
* * * *
89949300 GTGTGGGAGCCTCGGGCACCATCAGTAACTTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
* * **
89949343 GTGCGGGAGCCTCGGGCACCATCAGT-ACCTAGGCCCCTAATC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
* **
89949385 GTGCGGGAGCCTCGGGCACCATCGGT-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TC
* * ** *
89949427 GTGTGGGAGCCTCGGACACCATCGACAACCTAGGCCCATGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
* * * *
89949470 GTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCCTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
89949513 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
* * *
89949556 GTGCGAGAGCCTCGGG-ACCATCAG-CACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
** * * **
89949597 GT-CTGGGAGCCTCGGGCATTATCAGT-ACCTTGGTGCTTGGAT-
1 GTGC-GGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TC
* * * * *
89949639 GTGCGGCAGCC-CTGGACACCATCGGCAACCTAGACCCTTAGTC
1 GTGCGGGAGCCTC-GGGCACCATCGGTAACCTAGGCCCTTGGTC
* **
89949682 GTGCGGGAGCCTCGGGCACCATC-G-ACACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGTA-ACCTAGGCCCTTGG-TC
* **
89949724 GTGCGGCAGCCTCGAACACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
* * *
89949767 GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
*
89949810 GTGCGGGAGCCTCAGGCACCATCGGTAACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
* * * **
89949852 GTGCGAGAGCCTCGGGCACCATC-G-ACACATTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGTA-ACCTAGGCCCTTGG-TC
* ** *
89949894 GTGCGGAAGCCTCGAACACCATCAGG-AACCTAGGCTCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGTAACCTAGGCCCTTGGTC
*
89949937 GTGTGGGAGCCTCGGGCACCATCGGTAACCTACGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGTAACCTA-GGCCCTTGGTC
89949980 GTGCGGGAGCCTCGGGCAC
1 GTGCGGGAGCCTCGGGCAC
89949999 TATTGGCACC
Statistics
Matches: 644, Mismatches: 113, Indels: 56
0.79 0.14 0.07
Matches are distributed among these distances:
40 2 0.00
41 37 0.06
42 197 0.31
43 400 0.62
44 8 0.01
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
Found at i:89949479 original size:213 final size:213
Alignment explanation
Indices: 89949213--89950098 Score: 979
Period size: 213 Copynumber: 4.2 Consensus size: 213
89949203 GGCCACTGGT
* * * *
89949213 TGTGCAGGAGCCTCGGGCACCATCGGTAA-CTGAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACC
1 TGTGCGGGAGCCTCGGACACCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * *
89949277 ATCGGCAACCTAGGCCCATGATCGTGTGGGAGCCTCGGGCACCATCAGTAACTTAGGCCCTTGGT
65 ATCGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGT
* * * *
89949342 TGTGCGGGAGCCTCGGGCACCATCAGTACCTAGGCCCCTAATCGTGCGGGAGCCTCGGGCACCAT
130 CGTGCGAGAGCCTCGGGCACCATCAGCACCTAGGCCCCTGATCGTGCGGGAGCCTCGGGCACCAT
89949407 CGGTACCTTGGTGCTTGGA
195 CGGTACCTTGGTGCTTGGA
* * * *
89949426 TGTGTGGGAGCCTCGGACACCATCGACAACCTAGGCCCATGGTCGTGCGGGAGCCTCAGGCACCA
1 TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * *
89949491 TCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
66 TCGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
* * **
89949556 GTGCGAGAGCCTCGGG-ACCATCAGCACCTAGGCCCTTGGTCGT-CTGGGAGCCTCGGGCATTAT
131 GTGCGAGAGCCTCGGGCACCATCAGCACCTAGGCCCCTGATCGTGC-GGGAGCCTCGGGCACCAT
*
89949619 CAGTACCTTGGTGCTTGGA
195 CGGTACCTTGGTGCTTGGA
* * *
89949638 TGTGCGGCAGCC-CTGGACACCATCGGCAACCTAGACCCTTAGTCGTGCGGGAGCCTCGGGCACC
1 TGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * ** * **
89949702 ATCGAC-ACCTTGGTGCTTGGAT-GTGCGGCAGCCTCGAACACCATCGGTAACCTAGGCCCTTGG
65 ATCGGCAACCTAGGCCCTT-GATCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG
* * *
89949765 TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACC
129 TCGTGCGAGAGCCTCGGGCACCATCAGC-ACCTAGGCCCCTGATCGTGCGGGAGCCTCGGGCACC
* *
89949830 ATCGGTAACCTAGG-CCTTGG-
193 ATCGGT-ACCTTGGTGCTTGGA
* * * * * ** * **
89949850 TCGTGCGAGAGCCTCGGGCACCATCGAC-ACATTGGTGCTTGGAT-GTGCGGAAGCCTCGAACAC
1 T-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* * *
89949913 CATCAGG-AACCTAGGCTCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGTAACCTACGG-CCTT
64 CATC-GGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGTAACCTA-GGCCCTT
* * ** * * * *
89949976 GGTCGTGCGGGAGCCTCGGGCACTATTGGCACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGC
127 GGTCGTGCGAGAGCCTCGGGCACCATCAGCACC-TAG-GCCCCTGATCGTGCGGGAGCCTCGGGC
* * *
89950040 AGCATTGGCACCTTGGTGCTTGGA
190 ACCATCGGTACCTTGGTGCTTGGA
* * *
89950064 TGTGTGGGAGCCTTGGACACCATAGGCAACCTAGG
1 TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
89950099 ACGTTGGATG
Statistics
Matches: 562, Mismatches: 91, Indels: 39
0.81 0.13 0.06
Matches are distributed among these distances:
211 66 0.12
212 167 0.30
213 305 0.54
214 24 0.04
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (213 bp):
TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
TCGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
GTGCGAGAGCCTCGGGCACCATCAGCACCTAGGCCCCTGATCGTGCGGGAGCCTCGGGCACCATC
GGTACCTTGGTGCTTGGA
Found at i:89949745 original size:297 final size:297
Alignment explanation
Indices: 89949086--89950037 Score: 1007
Period size: 297 Copynumber: 3.2 Consensus size: 297
89949076 GACGTCTGTG
* * * * * * * * *
89949086 GTGCGAGAGCCTCGAGTAGCATCAACACCTTGGTGCTCGAATGTGCGAGAGCCTCGAGCAGCATC
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCG-GAGCCTCGAACACCATC
* ** * * *
89949151 GAC-ACCTTAGTGCCTCA-GAT-GTGCGGGAGTATCGGACACCATCGGCAAACTTGGCCACTGGT
65 GACAACC-TAG-GCC-CATGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGT
* * *
89949213 TGTGCAGGAGCCTCGGGCACCATCGGTAA-CTGAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACC
126 TGTGCGGGAGCCTCGGGCACCATCGGTAACCT-AGGCCCTTGGTCGTGCGAGAGCCTCGGGCACC
* * *
89949277 ATCGGCAACCTAGGCCCATGATCGTGTGGGAGCCTCGGGCACCATCAGTAACTTAGGCCCTTGGT
190 ATCAGCAACCTAGGCCCATGATCGTCTGGGAGCCTCGGGCACCATCAGTAACTTAGGCCCTTGGA
* * * *
89949342 TGTGCGGGAGCCTCGGGCACCATCAGTACCTAGGCCCCTAATC
255 TGTGCGGCAGCCTCGGACACCATCAGAACCTAGACCCCTAATC
** * *
89949385 GTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGTGGGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTG-CGGAGCCTCGAACACCATC
89949450 GACAACCTAGGCCCATGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCCTGGTTGT
65 GACAACCTAGGCCCATGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTTGT
89949515 GCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCA
129 GCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCA
* * ** * **
89949579 GC-ACCTAGGCCCTTGGTCGTCTGGGAGCCTCGGGCATTATCAGTACCTT-GGTGCTTGGATGTG
194 GCAACCTAGGCCCATGATCGTCTGGGAGCCTCGGGCACCATCAGTAACTTAGGCCCTTGGATGTG
* * *
89949642 CGGCAGCC-CTGGACACCATCGGCAACCTAGACCCTTAGTC
259 CGGCAGCCTC-GGACACCATCAG-AACCTAGACCCCTAATC
89949682 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGCAGCCTCGAACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGG-AGCCTCGAACACCATC
** * * *
89949747 GGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGT
65 GACAACCTAGGCCCATGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTTGT
*
89949812 GCGGGAGCCTCAGGCACCATCGGTAACCTAGG-CCTTGGTCGTGCGAGAGCCTCGGGCACCATC-
129 GCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCA
* * ** * * ** * * *
89949875 G-ACACATTGGTGCTTGGAT-GTGC-GGAAGCCTCGAACACCATCAGGAACCTAGGCTCTTGG-T
194 GCA-ACCTAGGCCCAT-GATCGT-CTGGGAGCCTCGGGCACCATCAGTAACTTAGGCCCTTGGAT
* * * * * * **
89949936 CGTGTGGGAGCCTCGGGCACCATCGGTAACCTACG-GCCTTGGTC
256 -GTGCGGCAGCCTCGGACACCATCAG-AACCTA-GACCCCTAATC
* * * *
89949980 GTGCGGGAGCCTCGGGCACTATTGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGA
1 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTG-CTTGGATGTGC-GGAGCCTCGA
89950038 GCAGCATTGG
Statistics
Matches: 558, Mismatches: 75, Indels: 40
0.83 0.11 0.06
Matches are distributed among these distances:
295 1 0.00
296 55 0.10
297 240 0.43
298 88 0.16
299 164 0.29
300 10 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (297 bp):
GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGAGCCTCGAACACCATCG
ACAACCTAGGCCCATGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTTGTGC
GGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGC
AACCTAGGCCCATGATCGTCTGGGAGCCTCGGGCACCATCAGTAACTTAGGCCCTTGGATGTGCG
GCAGCCTCGGACACCATCAGAACCTAGACCCCTAATC
Found at i:89949875 original size:170 final size:169
Alignment explanation
Indices: 89949213--89950098 Score: 843
Period size: 170 Copynumber: 5.2 Consensus size: 169
89949203 GGCCACTGGT
* *
89949213 TGTGCAGGAGCCTCGGGCACCATCGGTAA-CTGAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACC
1 TGTGC-GGAGCCTCGGACACCATCGGTAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * * * *
89949277 ATCGGCAACCTAGGCCCATGATCGTGTGGGAGCCTCGGGCACCATCAGTAACTTAGGCCCTTGGT
64 ATCGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGG-CCTTGGT
* * * ** * *
89949342 TGTGCGGGAGCCTCGGGCACCATC-AGTACCTAGGCCCCT-AA
128 CGTGCGGGAGCCTCGGGCACCATCGA-CACCTTGGTGCTTGGA
* * ** * *
89949383 TCGTGCGGGAGCCTCGGGCACCATCGGT-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACAC
1 T-GTGC-GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* *
89949446 CATCGACAACCTAGGCCCATGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCCTGG
63 CATCGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGG-CCTTGG
* * **
89949511 TTGTGCGGGAGCCTCGGGCACCATCGGTA-ACCTAGGCCCTTGG-
127 TCGTGCGGGAGCCTCGGGCACCATC-G-ACACCTTGGTGCTTGGA
* * * *
89949554 TCGTGCGAGAGCCTCGG-GACCATCAG-CACCTAGGCCCTTGGTCGT-CTGGGAGCCTCGGGCAT
1 T-GTGCG-GAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGC-GGGAGCCTCGGGCAC
* * * * ** * * * *
89949616 TATCAG-TACCTTGGTGCTTGGAT-GTGCGGCAGCC-CTGGACACCATCGGCAACCTAGACCCTT
63 CATCGGCAACCTAGGCCCATGG-TCGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAG-GCCTT
*
89949678 AGTCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGA
125 GGTCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGA
* *
89949723 TGTGCGGCAGCCTCGAACACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
1 TGTGCGG-AGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* *
89949788 TCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGCCTTGGTCG
65 TCGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCTTGGTCG
* *
89949853 TGCGAGAGCCTCGGGCACCATCGACACATTGGTGCTTGGA
130 TGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGA
* * *
89949893 TGTGCGGAAGCCTCGAACACCATCAGG-AACCTAGGCTCTTGGTCGTGTGGGAGCCTCGGGCACC
1 TGTGCGG-AGCCTCGGACACCATC-GGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * * * * *
89949957 ATCGGTAACCTACGG-CCTTGGTCGTGCGGGAGCCTCGGGCACTATTGGC-ACCTTGGTGCCTCG
64 ATCGGCAACCTA-GGCCCATGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACC-TAG-GCCTTG
* * * *
89950020 GAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGA
126 G-TCGTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGA
* * * *
89950064 TGTGTGGGAGCCTTGGACACCATAGGCAACCTAGG
1 TGTG-CGGAGCCTCGGACACCATCGGTAACCTAGG
89950099 ACGTTGGATG
Statistics
Matches: 602, Mismatches: 84, Indels: 59
0.81 0.11 0.08
Matches are distributed among these distances:
167 2 0.00
168 27 0.04
169 77 0.13
170 328 0.54
171 161 0.27
172 6 0.01
173 1 0.00
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (169 bp):
TGTGCGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCTTGGTCGT
GCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGA
Found at i:89950027 original size:43 final size:42
Alignment explanation
Indices: 89949980--89950076 Score: 142
Period size: 43 Copynumber: 2.3 Consensus size: 42
89949970 GGCCTTGGTC
*
89949980 GTGCGGGAGCCTCGGGCA-CTATTGGCACCTTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGC-ATTGGCACCTTGGTG-CTCGGAT
*
89950023 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTCGGAT
*
89950065 GTGTGGGAGCCT
1 GTGCGGGAGCCT
89950077 TGGACACCAT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
42 17 0.34
43 32 0.64
44 1 0.02
ACGTcount: A:0.12, C:0.25, G:0.39, T:0.24
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTCGGAT
Found at i:89956288 original size:46 final size:46
Alignment explanation
Indices: 89956235--89956407 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
89956225 TGGTTGAGCA
89956235 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
89956281 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
89956326 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
89956374 CCCGAGCTCATTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
89956408 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:89956391 original size:93 final size:93
Alignment explanation
Indices: 89956232--89956402 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
89956222 AGATGGTTGA
* * *
89956232 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
89956297 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
89956325 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
89956390 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
89956403 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:89963935 original size:46 final size:45
Alignment explanation
Indices: 89963768--89963941 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
89963758 GATGGTTGAG
89963768 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
** * * * * *
89963813 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGC-A-A
*
89963860 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AA
* * *
89963906 CACCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
89963942 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
44 1 0.01
45 30 0.29
46 41 0.40
47 30 0.29
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (45 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
Found at i:89974428 original size:58 final size:59
Alignment explanation
Indices: 89974336--89974457 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 59
89974326 TCCCTCTCTA
** * * *
89974336 ATCCCAAAAGGTAGAATTTGGGTACCGTTACATGTTCGGTACCCAATAATGAATCAATC
1 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATCAATC
* *
89974395 ATCCC-AAAGGTAGAATTCAGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATCAATC
*
89974453 GTCCC
1 ATCCC
89974458 TGTCCCTCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
58 50 0.91
59 5 0.09
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATCAATC
Found at i:89975173 original size:42 final size:42
Alignment explanation
Indices: 89975102--89975194 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
89975092 AACTAGGCCA
* * *
89975102 TTGGTTGTGCGGGAGCCTCGGGCATCATCAGCACCTTGGTGC
1 TTGGATGTGCGGAAGCCTCGGGCACCATCAGCACCTTGGTGC
*
89975144 TTGGATGTGCGGAAGCCTCGGGGACCATCAGCACCTTGGTGC
1 TTGGATGTGCGGAAGCCTCGGGCACCATCAGCACCTTGGTGC
*
89975186 TTAGATGTG
1 TTGGATGTG
89975195 TGAGTGCCTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.15, C:0.24, G:0.35, T:0.26
Consensus pattern (42 bp):
TTGGATGTGCGGAAGCCTCGGGCACCATCAGCACCTTGGTGC
Found at i:89975264 original size:43 final size:43
Alignment explanation
Indices: 89975065--89977921 Score: 2093
Period size: 43 Copynumber: 67.3 Consensus size: 43
89975055 TGCCTCAGAT
* * * * * *
89975065 GTGCGGGAGCCTCGGACACCATTGGTAAACTAGGCCATTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
89975108 GTGCGGGAGCCTCGGGCATCATCAGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * ** *
89975150 GTGCGGAAGCCTCGGGGACCATCAGC-ACCTTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * * **
89975192 GTGTGAGTGCCTC-GGCGCCATCGAAAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
89975234 GTGCGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
89975277 ATGCGAGAGCCTTGGACACTATC--CAACCTAGGCCCCTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
89975318 GTGCGGGAGCCTCAGGCACCATCGGCAACCAAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
89975361 GTGCGAGAGCCTCGGG-ACCATTGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
89975403 GTGCGGGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
89975445 GTGTGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCTTTGCTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * ** *
89975487 GTGCAGGAGCCTCGGGCACCATTGG-TACATTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * *
89975529 GTGCGGGAGCCTCAGCCACCATCGGCAA-CTGAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCT-AGGCCCTTGGTC
* * * *
89975572 GTGCGGGAGCCTCGAGTACCATCAGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
89975615 GTACAAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
89975657 GTGTGGGAGCCTCGGACACTATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** * ***
89975699 ATGTGGGAGCCTCGGGCACCACCAAC-ACCTCGATACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* **
89975741 GTGCGAGAGCCTCGGGCACCATCCACAACC-AGGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTC
* * * * * **
89975784 ATGCGGCAGCCTCGGGCACCATCGGTAACGTAGGCCCCTAATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
89975827 TTGCGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
89975870 GTGTGAGAGCCTTGAG-ACCATCGAC-ACCTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
89975911 ATGCGGGAGCCTCAGGCAGCATCGGCATA--TTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCA-ACCTAGGCCCTTGG-TC
* * *
89975953 GTGCGGGAGCCTCGGACACCATCGGCAACCTAAGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
89975996 ATGCGGGAGCCTCAGGCATCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
89976039 GTGCGAGAGCCTCGGGCACCATCGG-TACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
89976081 GTACGGGAGCTTCGGGCACTATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * ** *
89976124 GTCCAGGAGCCTCGAGTAGTAAT-GGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
*
89976167 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
89976210 GTACGAGAGCCTCGGG-ATCATCAG-TACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
89976251 GTGCAGGAACCTCGGGCACCATCGGC-ACCTTGGTACTTGAAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTC
* * * * * * * *
89976293 GTACGGGAGTCTCGGACACCATCAGCAACCTAGGACATCGGTG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * * * ** *
89976336 GTACGAGAGCCTCAAGTAGCATCGGC-ACCTTGGTGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * * *
89976378 GTGTGGGAGCCTCGAGCAGCATCGG-TACCTTGGTACCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TC
* * * * * * *
89976421 GTGTGGAAGCCTCGGACACCATCGGTAAACTAGGCCATTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
89976464 GTGCGGGAGCCTCAGGCACTATCAGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * **
89976506 GTGC-AGATGCCTCGGGGACCATCGGC-ACTTTGGTGCTTGGAT-
1 GTGCGGGA-GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
89976548 GTGCGAGAGCCTC-GGCGCCATC-GAAATCCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAA-CCTAGGCCCTTGGTC
* * * *
89976590 GTGCGGGAGTCGCGAGCACCATCGGCAACCTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
89976633 TTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
89976676 ATGCGGGAGCCTTAGGCACCATCAGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
89976719 TTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
89976762 ATGCGAGAGTCTCGGG-ACCATTGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
89976803 GTACGGGAGCCTCAGGCA-CATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
89976844 GTACGGAAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
89976887 GTACTGGAGCCTCGGGCACCATCAGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
89976930 GTGCGGGAGCCTCGGGCACCATTGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
89976972 GTGCGGGAGCCTCGAGTACCATTGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
89977015 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCATCAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * * * *
89977058 GTATGAGAGCCTCGGG-ACTATCAGCAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
89977100 TTGCGGGAGCCTCGGGCACTATCGGTAACATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
89977143 ATGCGAGAGTCTCGGG-ACCATTGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * * **
89977184 GTACGGGAGCCTAAGGCACCATCAGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * ** *
89977226 ATACGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTCGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
89977269 GTGCTGAAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
89977312 GTGCGGAAGCTTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
89977354 GTGCGGGAGCCTCGGGCACCATCTGCAATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
89977397 GTACAGGAGCCTCGAGTACCATTGGCAACCTAGGCCCCTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
89977440 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ***
89977483 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGATGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
** *
89977525 GTGCGGGAGCCTCGAACACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * * * * *
89977568 GTGTAGGAGACTCAGGCACCATCAGCAACGTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
89977611 GTGCGGAAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * **
89977653 GTGCGAAAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
89977695 GTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*** * * *
89977738 GTGTAAGAGCCTCGGGCACCATCGGTAATCTAGGCCCTTGCTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
89977781 GTACGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCT-TGGTC
* * * ** **
89977824 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
89977866 GTGCGGGAGCCTCGGACACCGTAGGCAACCTAGGACGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
*
89977909 GTGCGGGTGCCTC
1 GTGCGGGAGCCTC
89977922 AAGCAGTAGG
Statistics
Matches: 2200, Mismatches: 535, Indels: 158
0.76 0.18 0.05
Matches are distributed among these distances:
40 1 0.00
41 193 0.09
42 836 0.38
43 1154 0.52
44 16 0.01
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:89975424 original size:85 final size:85
Alignment explanation
Indices: 89975065--89977807 Score: 1884
Period size: 85 Copynumber: 32.3 Consensus size: 85
89975055 TGCCTCAGAT
* * * * * * * *
89975065 GTGCGGGAGCCTCGGACACCATTGGTAAACTAGGCCATTGGTTGTGCGGGAGCCTCGGGCATCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
* * **
89975130 CAGC-ACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* * * * ** * * *
89975150 GTGCGGAAGCCTCGGGGACCATCAGC-ACCTTGGTGCTTAGAT-GTGTGAGTGCCTCGGCG-CCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTCGG-GACCA
**
89975212 TCGAAAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * *
89975234 GTGCGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCCT-TGGACACTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGAC-C-A
*
89975298 TC--CAACCTAGGCCCCTGGAT-
64 TCGGCAACCTAGGCCCTTGG-TC
* * *
89975318 GTGCGGGAGCCTCAGGCACCATCGGCAACCAAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATC
89975383 GGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * *
89975403 GTGCGGGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
* *
89975467 CGGC-ACCTAGGCCTTTGCTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * * ** * * **
89975487 GTGCAGGAGCCTCGGGCACCATTGG-TACATTGGTGCTTAGAT-GTGCGGGAGCCTCAGCCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTC-GGGACCA
* *
89975550 TCGGCAA-CTGAGGCCCCTAGTC
64 TCGGCAACCT-AGGCCCTTGGTC
* * * * * *
89975572 GTGCGGGAGCCTCGAGTACCATCAGCAACCTAGGCCCCTGGTCGTACAAGAGCCTCGGGACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATC
89975637 GGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * * * * *
89975657 GTGTGGGAGCCTCGGACACTATCGGC-ACCTAGGCCCTTGGTCATGTGGGAGCCTCGGGCACCAC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
** * ***
89975721 CAAC-ACCTCGATACTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* ** *
89975741 GTGCGAGAGCCTCGGGCACCATCCACAACC-AGGGCCCTTGGTCATGCG-GCAGCCTCGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTCGTGCGAG-AGCCTCGGG-ACC
* * * **
89975804 ATCGGTAACGTAGGCCCCTAATC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
89975827 TTGCGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTTGTGTGAGAGCCTTGAGACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATC
* *
89975892 GAC-ACCTAGGCCTTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * * ** * *
89975911 ATGCGGGAGCCTCAGGCAGCATCGGCATA--TTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACC
1 GTGCGGGAGCCTCGGGCACCATCGGCA-ACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-GACC
* *
89975973 ATCGGCAACCTAAGCCCTTGATC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * *
89975996 ATGCGGGAGCCTCAGGCATCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
* * **
89976061 CGG-TACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* * * * * **
89976081 GTACGGGAGCTTCGGGCACTATCGGCAACCTAGGCCCTTGGTCGT-CCAGGAGCCTCGAGTAGTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCG-GGA-CC
*
89976145 AT-GGCAACCTAGGCCCCTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * *
89976167 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTGGTACGAGAGCCTCGGGATCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATC
* * *
89976232 AG-TACCTAAGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * ** * * * * *
89976251 GTGCAGGAACCTCGGGCACCATCGGC-ACCTTGGTACTTGAAT-GTACGGGAGTCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTCGTGCGAGAGCCTCGG-GACCA
* * * * *
89976314 TCAGCAACCTAGGACATCGGTG
64 TCGGCAACCTAGGCCCTTGGTC
* * ** * * * ** * * * * *
89976336 GTACGAGAGCCTCAAGTAGCATCGGC-ACCTTGGTGCTCGGAT-GTGTGGGAGCCTCGAGCAGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GGACCA
* * * *
89976399 TCGG-TACCTTGGTACCTCGGAT-
64 TCGGCAACCTAGG-CCCTTGG-TC
* * * * * * * * * *
89976421 GTGTGGAAGCCTCGGACACCATCGGTAAACTAGGCCATTGGTTGTGCGGGAGCCTCAGGCACTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGGACCAT
* * **
89976486 CAGC-ACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* * * * **
89976506 GTGC-AGATGCCTCGGGGACCATCGGC-ACTTTGGTGCTTGGAT-GTGCGAGAGCCTCGGCG-CC
1 GTGCGGGA-GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-GACC
* *
89976567 ATC-GAAATCCTAGGCCCTTGGTT
63 ATCGGCAA-CCTAGGCCCTTGGTC
* * * * * *
89976590 GTGCGGGAGTCGCGAGCACCATCGGCAACCTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
* *
89976655 CAGTAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* ** * * * *
89976676 ATGCGGGAGCCTTAGGCACCATCAGCAACCTAGGCCCCTGGTCTTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
* *
89976741 CAGTAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * * * *
89976762 ATGCGAGAGTCTCGGG-ACCATTGGC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCAGG-CACAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGAC-CAT
* **
89976824 CGGC-ACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* * * * *
89976844 GTACGGAAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTACTG-GAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGGG-ACCA
* * *
89976908 TCAGTAACCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * ** * *
89976930 GTGCGGGAGCCTCGGGCACCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGTACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GGACCA
* *
89976993 TTGGCAACCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* ** ** *
89977015 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCATCAGTCGTATGAGAGCCTCGGGACTATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATC
* * *
89977080 AGCAACCTAGGCCCCTAGTC
66 GGCAACCTAGGCCCTTGGTC
* * * * * * *
89977100 TTGCGGGAGCCTCGGGCACTATCGGTAACATAGGCCCTTGGTCATGCGAGAGTCTCGGGACCATT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATC
89977165 GGC-ACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* ** * * ** * * * **
89977184 GTACGGGAGCCTAAGGCACCATCAGC-ACCTTGGTGCTTGGAT-ATACGGGAGCCTCGAACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GGACCA
*
89977247 TCGGCAACCTAGGCCCTTCGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * * * *
89977269 GTGCTGAAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG-GAAGCTTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG-AGCCTCGGG-ACCA
* **
89977333 TCGGC-ACCTTGGTGCTTGGAT-
64 TCGGCAACCTAGGCCCTTGG-TC
* * * *
89977354 GTGCGGGAGCCTCGGGCACCATCTGCAATCTAGGCCCTTGGTCGTAC-AGGAGCCTCGAGTACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCG-GGACCA
* * *
89977418 TTGGCAACCTAGGCCCCTGGTT
64 TCGGCAACCTAGGCCCTTGGTC
* *
89977440 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
* ***
89977505 CGGC-ACCTTGATGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
** * * * *
89977525 GTGCGGGAGCCTCGAACACCATCGGTAACCTAGGCCCTTGGTCGTG-TAGGAGACTCAGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTC-GGGACCA
* * * *
89977589 TCAGCAACGTAGGCCCCTAGTC
64 TCGGCAACCTAGGCCCTTGGTC
* *
89977611 GTGCGGAAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGAAAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
* * **
89977675 CGAC-ACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* * * **
89977695 GTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTAGTGTAAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCAT
* * *
89977760 CGGTAATCTAGGCCCTTGCTC
65 CGGCAACCTAGGCCCTTGGTC
* *
89977781 GTACGGGAGCCTCGAGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
89977808 CCTTGGTGCC
Statistics
Matches: 2061, Mismatches: 486, Indels: 221
0.74 0.18 0.08
Matches are distributed among these distances:
82 22 0.01
83 93 0.05
84 571 0.28
85 831 0.40
86 536 0.26
87 8 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:89975681 original size:128 final size:126
Alignment explanation
Indices: 89975065--89977807 Score: 1770
Period size: 128 Copynumber: 21.5 Consensus size: 126
89975055 TGCCTCAGAT
* * * * * *
89975065 GTGCGGGAGCCTCG-GACACCATTGGTAAACTAGGCCATTGGTTGTGCGGGAGCCTCGGGCATCA
1 GTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCA
* * ** * * * * * ** *
89975129 TCAGC-ACCTTGGTGCTTGGAT-GTGCGGAAGCCTCGGGGACCATCAGCACCTTGGTGCTTAGAT
64 TCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GGCACCATCGGCAACTAGGCCCTT-GGT
89975192 -
126 C
* * * * ** *
89975192 GTGTGAGTGCCTCG-GCGCCATCGAAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGACCAT
* * * * * *
89975256 CAGCAACCTAGGCCCTTGGTCATGCGAGAGCCTTGGACACTATC--CAACCTAGGCCCCTGGAT-
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAA-CTAGGCCCTTGG-TC
* *
89975318 GTGCGGGAGCCTC-AGGCACCATCGGCAACCAAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCAT
1 GTGCGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCAT
* * *
89975382 TGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGGCACCATCGGCAACTAGGCCCTTGGTC
* * * * *
89975445 GTGTGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCTTTGCTCGTGCAGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCAT
* * * * ** * * * *
89975509 TGG-TACATTGGTGCTTAGAT-GTGCGGGAGCCTCAGCCACCATCGGCAACTGAGGCCCCTAGTC
65 CGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTC-GGCACCATCGGCAACT-AGGCCCTTGGTC
* * * * **
89975572 GTGCGGGAGCCTCGAGTACCATCAGCAACCTAGGCCCCTGGTCGTACAAGAGCCTCGGGACCATC
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATC
* * *
89975637 GGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGACACTATCGGCACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACTAGGCCCTTGGTC
* * * * ** * *** *
89975699 ATGTGGGAGCCTCGGGCACCACCAAC-ACCTCGATACTTGGAT-GTGCGAGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-ACCA
** * * * * **
89975762 TCCACAACC-AGGGCCCTTGGTCATGCGGCAGCCTCGGGCACCATCGGTAACGTAGGCCCCTAAT
64 TCGGCAACCTA-GGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAAC-TAGGCCCTTGGT
89975826 C
126 C
* * * * * * *
89975827 TTGCGAGAGCCTC-AGGCACCATCGGCAACCTAGGCCCTTGGTTGTGTGAGAGCCTTGAGACCAT
1 GTGCGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCAT
* * * * * **
89975891 CGAC-ACCTAGGCCTTTGGTCATGCGGGAGCCTCAGGCAGCATCGGCATA-TTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA-ACTAGGCCCTTGG-TC
* * * * *
89975953 GTGCGGGAGCCTCG-GACACCATCGGCAACCTAAGCCCTTGATCATGCGGGAGCCTCAGGCATCA
1 GTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGGACCA
* * * * * * **
89976017 TCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGAT-
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACTAGGCCCTTGG-TC
* * * * * * * **
89976081 GTACGGGAGCTTCGGGCACTATCGGCAACCTAGGCCCTTGGTCGTCCAGGAGCCTCGAGTAGTAA
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGA-CCA
* *
89976146 T-GGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTG
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAA-CTAGGCCCTTGGTC
* * * * * * * * *
89976210 GTACGAGAGCCTCG-GGATCATCAG-TACCTAAGCCCTTGGTCGTGCAGGAACCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCAT
* ** * * * * * * * *
89976273 CGGC-ACCTTGGTACTTGAAT-GTACGGGAGTCTCGGACACCATCAGCAACCTAGGACATCGGTG
65 CGGCAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGG-CACCATCGGCAA-CTAGGCCCTTGGTC
* * * * * * ** * * * *
89976336 GTACGAGAGCCTCAAGTAGCATCGGC-ACCTTGGTGCTCGGAT-GTGTGGGAGCCTCGAGCAGCA
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GGACCA
* * * * * * * *
89976399 TCGG-TACCTTGGTACCTCGGAT-GTGTGGAAGCCTCGGACACCATCGGTAAACTAGGCCATTGG
64 TCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGG-CAACTAGGCCCTTGG
*
89976462 TT
125 TC
* * * ** *
89976464 GTGCGGGAGCCTC-AGGCACTATCAGC-ACCTTGGTGCTTGGAT-GTGC-AGATGCCTCGGGGAC
1 GTGCGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA-GCCTC-GGGAC
* * ** * * *
89976525 CATCGGC-ACTTTGGTGCTTGGAT-GTGCGAGAGCCTCGGCGCCATC-GAAATCCTAGGCCCTTG
62 CATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCACCATCGGCAA--CTAGGCCCTTG
*
89976587 GTT
124 GTC
* * * *
89976590 GTGCGGGAGTCGCGAGCACCATCGGCAACCTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCAT
* * * * * *
89976655 CAGTAACCTAGGCCCTTGGTCATGCGGGAGCCTTAGGCACCATCAGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGGCACCATCGGCAA-CTAGGCCCTTGGTC
* * * * * * * *
89976719 TTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGTCATGCGAGAGTCTCGGGACCATT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATC
* * * **
89976784 GGC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCAGGCA-CATCGGCACCTTGGTGCTTGGAT-
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACTAGGCCCTTGG-TC
* * * * *
89976844 GTACGGAAGCCTTG-GACACCATCGGCAACCTAGGCCCTTGGTCGTACTGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCA
* * * * * * **
89976908 TCAGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATTGGCACCTTGGTGCTTGGAT-
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACTAGGCCCTTGG-TC
* * *
89976972 GTGCGGGAGCCTCGAGTACCATTGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCAT
* ** ** * * * * * *
89977037 CGGCAACCTAGGCCATCAGTCGTATGAGAGCCTCGGGACTATCAGCAACCTAGGCCCCTAGTC
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAA-CTAGGCCCTTGGTC
* * * * * * * * *
89977100 TTGCGGGAGCCTCGGGCACTATCGGTAACATAGGCCCTTGGTCATGCGAGAGTCTCGGGACCATT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATC
* * * * * **
89977165 GGC-ACCTAGGCCCTTGGTCGTACGGGAGCCTAAGGCACCATCAGCACCTTGGTGCTTGGAT-
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT-CGGCACCATCGGCAACTAGGCCCTTGG-TC
* * * * * * *
89977226 ATACGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTCGTCGTGCTGAAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GACCAT
* * * * * * **
89977291 CGGTAACCTAGGCCCCTGGTCGTGCGGAAGCTTCGGGCACCATCGGCACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACTAGGCCCTTGG-TC
* * * * * *
89977354 GTGCGGGAGCCTCGGGCACCATCTGCAATCTAGGCCCTTGGTCGTACAGGAGCCTCGAGTACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGACCAT
* * * *
89977419 TGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTC
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAA-CTAGGCCCTTGGTC
* * *** **
89977483 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGATGCTTGGAT-GTGCGGGAGCCTCGAACACCA
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GGACCA
* ** * * * *
89977546 TCGGTAACCTAGGCCCTTGGTCGTGTAGGAGACTCAGGCACCATCAGCAACGTAGGCCCCTAGTC
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAAC-TAGGCCCTTGGTC
* * **
89977611 GTGCGGAAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTGCGAAAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-ACCAT
* * ** * *
89977675 CGAC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTA
65 CGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCAA-CTAGGCCCTTGGTC
*** * * * * * *
89977738 GTGTAAGAGCCTCGGGCACCATCGGTAATCTAGGCCCTTGCTCGTACGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGACCAT
89977803 CGGCA
65 CGGCA
89977808 CCTTGGTGCC
Statistics
Matches: 2063, Mismatches: 456, Indels: 192
0.76 0.17 0.07
Matches are distributed among these distances:
124 4 0.00
125 62 0.03
126 430 0.21
127 571 0.28
128 829 0.40
129 164 0.08
130 3 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (126 bp):
GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGACCATC
GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACTAGGCCCTTGGTC
Found at i:89975683 original size:212 final size:212
Alignment explanation
Indices: 89975200--89977878 Score: 1306
Period size: 212 Copynumber: 12.6 Consensus size: 212
89975190 ATGTGTGAGT
* ** * * *
89975200 GCCTC-GGCGCCATCGAAAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCAGCAAC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGA-CACTATCGGC-AC
* * * * * ** *
89975263 CTAGGCCCTTGGTCATGC-GAGAGCCTTGGACACTATC--CAACCTAGGCCCCTGGATGTGCGGG
64 CTAGGCCCTTGGTCATGCAG-GAGCCTCGGGCACCATCGGC-ACATTGGTGCTTGGATGTGCGGG
* * * * * *
89975325 AGCCTCAGGCACCATCGGCAACCAAGGCCCTTGGTCGTGCGAGAGCCTCG-GGACCATTGGCAAC
127 AGCCTCAGGCACCATCGGCAA-CTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCATCGGCAAC
* *
89975389 CTAGGCCCTTGGTCGTGCGGGA
191 CTAGGCCCCTGGTCGTGCGAGA
* * *
89975411 GCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCT
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGACACTATCGGCACCT
* * * * * *
89975475 AGGCCTTTGCTCGTGCAGGAGCCTCGGGCACCATTGGTACATTGGTGCTTAGATGTGCGGGAGCC
66 AGGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCACATTGGTGCTTGGATGTGCGGGAGCC
* * * * *
89975540 TCAGCCACCATCGGCAACTGAGGCCCCTAGTCGTGCGGGAGCCTCGAGTACCATCAGCAACCTAG
131 TCAGGCACCATCGGCAACT-AGGCCCCTGGTCATGCGGGAGCCTCGAGCACCATCGGCAACCTAG
* *
89975605 GCCCCTGGTCGTACAAGA
195 GCCCCTGGTCGTGCGAGA
89975623 GCCTCGGG-ACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGACACTATCGGCACCT
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGACACTATCGGCACCT
** * ** * * * * *
89975687 AGGCCCTTGGTCATGTGGGAGCCTCGGGCACCACCAACACCTCGATACTTGGATGTGCGAGAGCC
66 AGGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCACATTGGTGCTTGGATGTGCGGGAGCC
* ** * * * * * *
89975752 TCGGGCACCATCCACAACCAGGGCCCTTGGTCATGCGGCAGCCTCGGGCACCATCGGTAACGTAG
131 TCAGGCACCATCGGCAACTA-GGCCCCTGGTCATGCGGGAGCCTCGAGCACCATCGGCAACCTAG
** *
89975817 GCCCCTAATCTTGCGAGA
195 GCCCCTGGTCGTGCGAGA
* * * * *
89975835 GCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTTGTGTGAGAGCCTTGAGAC-C-ATCGACACC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCG-GACACTATCGGCACC
* * * * *
89975898 TAGGCCTTTGGTCATGCGGGAGCCTCAGGCAGCATCGGCATATTGGTGCTTGGATGTGCGGGAGC
65 TAGGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCACATTGGTGCTTGGATGTGCGGGAGC
* * * * *
89975963 CTC-GGACACCATCGGCAACCTAAGCCCTTGATCATGCGGGAGCCTC-AGGCATCATCGGTAACC
130 CTCAGG-CACCATCGGCAA-CTAGGCCCCTGGTCATGCGGGAGCCTCGA-GCACCATCGGCAACC
89976026 TAGGCCCCTGGTCGTGCGAGA
192 TAGGCCCCTGGTCGTGCGAGA
* * ** ** * *
89976047 GCCTCGGGCACCATCGG-TACCTTGGTGCTTGGAT-GTACGGGAGCTTCGGGCACTATCGGCAAC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGTGGGAGCCTCGGACACTATCGGC-AC
* * * * ** * * ** *
89976110 CTAGGCCCTTGGTCGTCCAGGAGCCTCGAGTAGTAAT-GGCAACCTAGGCCCCTGG-TCGTGCGG
64 CTAGGCCCTTGGTCATGCAGGAGCCTCGGGCA-CCATCGGC-ACATTGGTGCTTGGAT-GTGCGG
* * ** * * * * * *
89976173 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTGGTACGAGAGCCTCG-GGATCATCAG-TA
126 GAGCCTCAGGCACCATCGGCAA-CTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCATCGGCAA
* *
89976236 CCTAAGCCCTTGGTCGTGC-AGGA
190 CCTAGGCCCCTGGTCGTGCGA-GA
* * ** * ** * * *
89976259 ACCTCGGGCACCATCGGC-ACCTTGGTACTTGAAT-GTACGGGAGTCTCGGACACCATCAGCAAC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTCGTGTGGGAGCCTCGGACACTATCGGC-AC
* * * ** * ** * * * * *
89976322 CTAGGACATCGGTGGTAC-GAGAGCCTCAAGTAGCATCGGCACCTTGGTGCTCGGATGTGTGGGA
64 CTAGGCCCTTGGTCATGCAG-GAGCCTCGGGCACCATCGGCACATTGGTGCTTGGATGTGCGGGA
* * * * ** * *
89976386 GCCTC-GAGCAGCATCGGTACCTTGGTACCTCGG--ATGTGTGGAAGCCTCG-GACACCATCGGT
128 GCCTCAG-GCACCATCGGCAACTAGGCCCCT-GGTCATGCG-GG-AGCCTCGAG-CACCATCGGC
* ** * *
89976447 AAACTAGGCCATTGGTTGTGCGGGA
188 AACCTAGGCCCCTGGTCGTGCGAGA
* * * * ** ** ** *
89976472 GCCTCAGGCACTATCAGC-ACCTTGGTGCTTGGAT-GTG-CAGATGCCTCGGGGACCATCGGCAC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGTGGGA-GCCTCGGACACTATCGGCAC
* * ** * * ** * * ** *
89976534 TTTGGTGCTTGGAT-GTGC-GAGAGCCTC-GGCGCCATCGAAATCCTAGGCCCTTGGTTGTGCGG
64 CTAGGCCCTTGG-TCATGCAG-GAGCCTCGGGCACCATCGGCA-CATTGGTGCTTGGATGTGCGG
* * ** * * * *
89976596 GAGTCGC-GAGCACCATCGGCAACCTAGGCCTTTGGTCTTGCGGGAGCCTCGGGCACCATCAGTA
126 GAGCCTCAG-GCACCATCGGCAA-CTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCATCGGCA
* * *
89976660 ACCTAGGCCCTTGGTCATGCGGGA
189 ACCTAGGCCCCTGGTCGTGCGAGA
** * * * * * * **
89976684 GCCTTAGGCACCATCAGCAACCTAGGCCCCTGGTCTTGCGGGAGCCTCGGGCACCATCAGTAACC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGACACTATC-GGCACC
* * * * ** *
89976749 TAGGCCCTTGGTCATGC-GAGAGTCTCGGG-ACCATTGGCACCTAGGCCCTTGG-TCGTACGGGA
65 TAGGCCCTTGGTCATGCAG-GAGCCTCGGGCACCATCGGCACATTGGTGCTTGGAT-GTGCGGGA
* * ** * * *
89976811 GCCTCAGGCA-CATCGGCACCTTGGTGCTTGG--ATGTACGGAAGCCTTG-GACACCATCGGCAA
128 GCCTCAGGCACCATCGGCAACTAGGCCCCTGGTCATG--CGGGAGCCTCGAG-CACCATCGGCAA
* *
89976872 CCTAGGCCCTTGGTCGTACTG-GA
190 CCTAGGCCCCTGGTCGTGC-GAGA
* * * * * * *
89976895 GCCTCGGGCACCATCAGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATTGGCACCT
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGACACTATCGGCACCT
* ** * * * * * * * ** *
89976960 TGGTGCTTGGAT-GTGCGGGAGCCTCGAGTACCATTGGCAACCTAGGCCCCTGG-TCGTGCGGGA
66 AGGCCCTTGG-TCATGCAGGAGCCTCGGGCACCATCGGC-ACATTGGTGCTTGGAT-GTGCGGGA
* * * * ** * * * *
89977023 GCCTCGGGCACCATCGGCAACCTAGG-CCATCAGTCGTATGAGAGCCTCG-GGACTATCAGCAAC
128 GCCTCAGGCACCATCGGCAA-CTAGGCCCCT-GGTCATGCGGGAGCCTCGAGCACCATCGGCAAC
* * *
89977086 CTAGGCCCCTAGTCTTGCGGGA
191 CTAGGCCCCTGGTCGTGCGAGA
* * * * * * * *
89977108 GCCTCGGGCACTATCGGTAACATAGGCCCTTGGTCATGCGAGAGTCTCGGGAC-C-ATTGGCACC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTC-GGACACTATCGGCACC
* * * ** * * * *
89977171 TAGGCCCTTGGTCGTACGGGAGCCTAAGGCACCATCAGCACCTTGGTGCTTGGATATACGGGAGC
65 TAGGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCACATTGGTGCTTGGATGTGCGGGAGC
* * * * * * *
89977236 CTC-GAACACCATCGGCAACCTAGGCCCTTCGTCGTGCTGAAGCCTCG-GACACCATCGGTAACC
130 CTCAG-GCACCATCGGCAA-CTAGGCCCCTGGTCATGCGGGAGCCTCGAG-CACCATCGGCAACC
89977299 TAGGCCCCTGGTCGTGCG-GAA
192 TAGGCCCCTGGTCGTGCGAG-A
* * ** * * * * *
89977320 GCTTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCTGCAAT
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGTGGGAGCCTCGGACACTATCGGC-AC
* * * * * * * ** * *
89977383 CTAGGCCCTTGGTCGTACAGGAGCCTCGAGTACCATTGGCAACCTAGGCCCCTGGTTGTGCGGGA
64 CTAGGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGC-ACATTGGTGCTTGGATGTGCGGGA
* * * * *
89977448 GCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
128 GCCTCAGGCACCATCGGCAA-CTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCATCGGCAACC
* *** * *
89977512 TTGATGCTTGGAT-GTGCGGGA
192 TAGGCCCCTGG-TCGTGCGAGA
** * * * * *
89977533 GCCTCGAACACCATCGGTAACCTAGGCCCTTGGTCGTGTAGGAGACTCAGG-CACCATCAGCAAC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTC-GGACACTATCGGC-AC
* * * * * * * *
89977597 GTAGGCCCCTAGTCGTGC-GGAAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGG-TCGTGCGA
64 CTAGGCCCTTGGTCATGCAGG-AGCCTCGGGCACCATCGGC-ACATTGGTGCTTGGAT-GTGCGG
* * * * * ** * * *
89977659 AAGCCTCGGGCACCATCGACACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG-GACACCATCGACA
126 GAGCCTCAGGCACCATCGGCAACTAGGCCCCTGG-TCATGCGGGAGCCTCGAG-CACCATCGGCA
* * **
89977722 ACCTAGGCCCTTGGTAGTGTAAGA
189 ACCTAGGCCCCTGGTCGTGCGAGA
* * * ** *
89977746 GCCTCGGGCACCATCGGTAATCTAGGCCCTTGCTCGTACGGGAGCCTC-GAGCACCATCGGCACC
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGA-CACTATCGGCACC
* * * * * * * * * * *
89977810 TTGGTGCCTCAGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTCGTGCTTGGATGTGCGGGA
65 TAGG-CCCT-TGGTCATGCAGGAGCCTCGGGCACCATCGGCACATTGGTGCTTGGATGTGCGGGA
89977874 GCCTC
128 GCCTC
89977879 GGACACCGTA
Statistics
Matches: 1933, Mismatches: 437, Indels: 194
0.75 0.17 0.08
Matches are distributed among these distances:
209 4 0.00
210 69 0.04
211 374 0.19
212 744 0.38
213 478 0.25
214 255 0.13
215 8 0.00
216 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (212 bp):
GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGACACTATCGGCACCT
AGGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCACATTGGTGCTTGGATGTGCGGGAGCC
TCAGGCACCATCGGCAACTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCATCGGCAACCTAGG
CCCCTGGTCGTGCGAGA
Found at i:89976325 original size:297 final size:291
Alignment explanation
Indices: 89975025--89977899 Score: 1188
Period size: 297 Copynumber: 9.7 Consensus size: 291
89975015 GTCAGTGGTG
* * * ** * * *
89975025 CGAGAGCCTCAAGCAGCATCGGTACCTTGGTGCCTCAGATGTGCGGGAGCCTCGGACACCATTGG
1 CGAGAGCCTCAGGGA-CATCGGCACCTTGGTG-CTTGGATGTGC-GGAACCTCGGGCACCATCGG
* * * * * * * * * ** *
89975090 TAAACTAGGCCATTGGTTGTGCGGGAGCCTCGGGCATCATCAGC-ACCTTGGTGCTTGGAT-GTG
63 -CACCTAGGCCCTT-GATGTACGGGAGTCTCGGACACCATCAGCAACCTAGGCCCCTGG-TCGTG
* * * * * * * *
89975153 CG-GAAGCCTCGGGGACCATCAGCACCTTGGTGCTTAGATGTGTGAGTGCCTCG-GCGCCATCGA
125 CGAG-AGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * * * * *
89975216 AAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCTTGGTCATGC
189 CAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG-G-ACAATCGGTAACCTAGGCCCTTGGTCGTGC
* * * * * *
89975281 GAGAGCCTTGGACACTATC--CAACCTAGGCCCCTGGATGTG
252 GGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG-TGTA
* * ** ** * *
89975321 CGGGAGCCTCAGGCACCATCGGCAACCAAGGCCCTTGG-TCGTGCGAGAGCCTCGGG-ACCATTG
1 CGAGAGCCTCAGGGA-CATCGGC-ACCTTGGTGCTTGGAT-GTGCG-GAACCTCGGGCACCATCG
* * * * * * *
89975384 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTG
62 GC-ACCTAGGCCCTTGAT-GTACGGGAGTCTCGGACACCATCAGCAACCTAGGCCCCTGGTCGTG
* * * * * * * * *
89975448 TGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTTTGCTCGTGCAGGAGCCTCGGGCACCATTGG
125 CGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
* * * ** * * * * * * *
89975512 -TACATTGGTGCTTAGAT-GTGCGGGAGCCTCAGCCACCATCGGCAA-CTGAGGCCCCTAGTCGT
189 CAACCTAGGCCCCT-GGTCGTGCGGGAGCCTC-G-GACAATCGGTAACCT-AGGCCCTTGGTCGT
* * * *
89975574 GCGGGAGCCTCGAGTACCATCAGCAACCTAGGCCCCTGGTCGTA
250 GCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGT-GTA
* * ** * * * *
89975618 CAAGAGCCTC-GGGACCATCGGCAACCTAGGCCCTTGG-TCGTGTGGGAGCCTCGGACACTATCG
1 CGAGAGCCTCAGGGA-CATCGGC-ACCTTGGTGCTTGGAT-GTG-CGGAACCTCGGGCACCATCG
* * * * * *** *
89975681 GCACCTAGGCCCTTGGTCATGT--GGGAGCCTCGGGCACCACCAAC-ACCTCGATACTTGGAT-G
62 GCACCTAGGCCCTT-G--ATGTACGGGAGTCTCGGACACCATCAGCAACCTAGGCCCCTGG-TCG
** ** ** * * *
89975742 TGCGAGAGCCTCGGGCACCATCCACAACCAGGGCCCTTGG-TCATGCGGCAGCCTCGGGCACCAT
123 TGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCAT
* * ** * * * * *
89975806 CGGTAACGTAGGCCCCTAATCTTGCGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTTG
186 CGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GG-ACAATCGGTAACCTAGGCCCTTGGTCG
* * * * * * * *
89975871 TGTGAGAGCCTTGAG-ACCATCGACACCTAGGCCTTTGGTCATG
249 TGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGT-GTA
* * ** * *
89975914 CGGGAGCCTCAGGCAGCATCGGCATATTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGC
1 CGAGAGCCTCAGGGA-CATCGGCACCTTGGTGCTTGGATGTGC-GGAACCTCGGGCACCATCGGC
* * * * * * *
89975979 AACCTAAGCCCTTGATCATGCGGGAGCCTCAGG-CATCATCGGTAACCTAGGCCCCTGGTCGTGC
64 -ACCTAGGCCCTTGAT-GTACGGGAGTCTC-GGACACCATCAGCAACCTAGGCCCCTGGTCGTGC
* * * * *
89976043 GAGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTACGGGAGCTTCGGGCACTATCGGCA
126 GAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * * * * *
89976108 ACCTAGGCCCTTGGTCGTCCAGGAGCCTCGAGTAGTAAT-GGCAACCTAGGCCCCTGGTCGTGCG
191 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCG-G-A-CAATCGGTAACCTAGGCCCTTGGTCGTGCG
89976172 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTGGTA
253 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGT-GTA
* * ** **
89976213 CGAGAGCCTC-GGGATCATCAGTACCTAAGCCCTTGG-TCGTGCAGGAACCTCGGGCACCATCGG
1 CGAGAGCCTCAGGGA-CATCGGCACCTTGGTGCTTGGAT-GTGC-GGAACCTCGGGCACCATCGG
* ** * * * *
89976276 CACCTTGGTACTTGAATGTACGGGAGTCTCGGACACCATCAGCAACCTAGG-ACATCGGTGGTAC
63 CACCTAGGCCCTTG-ATGTACGGGAGTCTCGGACACCATCAGCAACCTAGGCCCCT-GGTCGTGC
** * * * * * *
89976340 GAGAGCCTCAAGTAGCATCGGCACCTTGGTGCTCGGATGTGTGGGAGCCTCGAGCAGCATCGG-T
126 GAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* ** * * * * *
89976404 ACCTTGGTACCTCGGAT-GTGTGGAAGCCTCGGACACCATCGGTAAACTAGGCCATTGGTTGTGC
191 ACCTAGGCCCCT-GG-TCGTGCGGGAGCCTCGGACA--ATCGGTAACCTAGGCCCTTGGTCGTGC
* * * * ** *
89976468 GGGAGCCTCAGGCACTATCAGCACCTTGGTGCTTGGATGTG
252 GGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTA
* * * * *
89976509 C-AGATGCCTCGGGGACCATCGGCACTTTGGTGCTTGGATGTGCGAGAGCCTC-GGCGCCATCGA
1 CGAGA-GCCTCAGGGA-CATCGGCACCTTGGTGCTTGGATGTGCG-GAACCTCGGGCACCATCGG
* * * * * ** *
89976572 AATCCTAGGCCCTTGGTTGTGCGGGAGTCGC-GAGCACCATCGGCAACCTAGGCCTTTGGTCTTG
63 CA-CCTAGGCCCTT-GATGTACGGGAGTCTCGGA-CACCATCAGCAACCTAGGCCCCTGGTCGTG
* ** * ** * *
89976636 CGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGG-TCATGCGGGAGCCT-TAGGCACCATC
125 CGAGAGCCTCGGGCACCATC-GGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGA-GCACCATC
* * * * *
89976699 AGCAACCTAGGCCCCTGGTCTTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGTCAT
187 GGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GG-ACAATCGGTAACCTAGGCCCTTGGTCGT
* * *
89976764 GCGAGAGTCTCGGG-ACCATTGGCACCTAGGCCCTTGGTCGTA
250 GCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGT-GTA
* * * * *
89976806 CGGGAGCCTCAGGCACATCGGCACCTTGGTGCTTGGATGTACGGAAGCCTTGGACACCATCGGCA
1 CGAGAGCCTCAGGGACATCGGCACCTTGGTGCTTGGATGTGCGGAA-CCTCGGGCACCATCGGC-
* * * * * *
89976871 ACCTAGGCCCTTGGTCGTACTGGAGCCTCGGGCACCATCAGTAACCTAGGCCCCTGGTCGTGCGG
64 ACCTAGGCCCTTGAT-GTACGGGAGTCTCGGACACCATCAGCAACCTAGGCCCCTGGTCGTGCGA
* * *
89976936 GAGCCTCGGGCACCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGTACCATTGGCAAC
128 GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCAAC
* * * ** ** *
89977001 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCATCAGTCGTATGAGA
193 CTAGGCCCCTGGTCGTGCGGGAGCCTC-GG-ACAATCGGTAACCTAGGCCCTTGGTCGTGCGGGA
* * * * * *
89977066 GCCTCGGG-ACTATCAGCAACCTAGGCCCCTAGTCTTG
256 GCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGT-GTA
* * * * ** * ** *
89977103 CGGGAGCCTC-GGGCACTATCGGTAACATAGGCCCTTGG-TCATGCGAGAGTCTCGGG-ACCATT
1 CGAGAGCCTCAGGG-AC-ATCGG-CACCTTGGTGCTTGGAT-GTGCG-GAACCTCGGGCACCATC
* * * * ** * *
89977165 GGCACCTAGGCCCTTGGTCGTACGGGAGCCTAAGG-CACCATCAGC-ACCTTGGTGCTTGGAT-A
61 GGCACCTAGGCCCTTGAT-GTACGGGAGTCT-CGGACACCATCAGCAACCTAGGCCCCTGG-TCG
* * ** * ** * * *
89977227 TACGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTCG-TCGTGCTGAAGCCTCG-GACACCA
123 TGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAG-CACCA
* * * * * * **
89977290 TCGGTAACCTAGGCCCCTGGTCGTGCGGAAGCTTCGGGCACCATCGG-CACCTTGGTGCTTGGAT
185 TCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GG-ACAATCGGTAACCTAGGCCCTTGG-T
* *
89977354 -GTGCGGGAGCCTCGGGCACCATCTGCAATCTAGGCCCTTGGTCGTA
247 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGT-GTA
* * * ** * * *
89977400 C-AGGAGCCTC-GAGTACCATTGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACCATC
1 CGA-GAGCCTCAG-GGA-CATCGGC-ACCTTGGTGCTTGGATGTGC-GGAACCTCGGGCACCATC
* * * * * *** *
89977463 GGCAACCTAGGCCCTT-AGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGATGCTTGGAT-
61 GGC-ACCTAGGCCCTTGA-T-GTACGGGAGTCTCGGACACCATCAGCAACCTAGGCCCCTGG-TC
* ** * * ** ** *
89977525 GTGCGGGAGCCTCGAACACCATCGGTAACCTAGGCCCTTGG-TCGTGTAGGAGACTC-AGGCACC
122 GTGCGAGAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGA-GCACC
* * * * * *
89977588 ATCAGCAACGTAGGCCCCTAGTCGTGCGGAAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGT
184 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GG-ACAATCGGTAACCTAGGCCCTTGGT
** * * ** *
89977652 CGTGCGAAAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTG
247 CGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TGTA
* * * * ** ** *
89977698 CGGGAGCCTC-GGACACCATCGACAACCTAGGCCCTTGG-TAGTGTAAGAGCCTCGGGCACCATC
1 CGAGAGCCTCAGG-GA-CATCGGC-ACCTTGGTGCTTGGAT-GTG-CGGAACCTCGGGCACCATC
* * * * * * * * *
89977761 GGTAATCTAGGCCCTTGCTCGTACGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCCTCAGAT
61 GG-CACCTAGGCCCTTGAT-GTACGGGAGTCTCGGA-CACCATCAGCAACC-TAG-GCCCCTGGT
* * * * * *
89977824 -GTGCGGGAGCCTCGAGCAGCATTGGCACCTTCGTGCTTGGATGTGCGGGAGCCTCG-GACACCG
121 CGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCA
*
89977887 TAGGCAACCTAGG
185 TCGGCAACCTAGG
89977900 ACGTTGGATG
Statistics
Matches: 1997, Mismatches: 465, Indels: 232
0.74 0.17 0.09
Matches are distributed among these distances:
294 13 0.01
295 155 0.08
296 443 0.22
297 729 0.37
298 393 0.20
299 252 0.13
300 12 0.01
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.20
Consensus pattern (291 bp):
CGAGAGCCTCAGGGACATCGGCACCTTGGTGCTTGGATGTGCGGAACCTCGGGCACCATCGGCAC
CTAGGCCCTTGATGTACGGGAGTCTCGGACACCATCAGCAACCTAGGCCCCTGGTCGTGCGAGAG
CCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCAACCTA
GGCCCCTGGTCGTGCGGGAGCCTCGGACAATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
GGGCACCATCGGCACCTAGGCCCTTGGTGTA
Found at i:89977283 original size:382 final size:380
Alignment explanation
Indices: 89976583--89977507 Score: 1339
Period size: 382 Copynumber: 2.4 Consensus size: 380
89976573 ATCCTAGGCC
* * * * * *
89976583 CTTGGTTGTGCGGGAGTCGCGAGCACCATCGGCAACCTAGGCCTTTGGTCTTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * * * *
89976648 GCACCATCAGTAACCTAGGCCCTTGGTCATGCGGGAGCCTTAGGCACCATCAGCAACCTAGGCCC
66 GCACCATCGGCAACCTAGG-CCTCGGTCGTGCGGGAGCC-TCGGGACCATCAGCAACCTAGGCCC
* * *
89976713 CTGGTCTTGCGGGAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGTCATGCGAGAGTCTCGGG
129 CTAGTCTTGCGGGAGCCTCGGGCACCATCGGTAACATAGGCCCTTGGTCATGCGAGAGTCTCGGG
* *
89976778 ACCATTGGCACCTAGGCCCTTGGTCGTACGGGAGCCTCAGGCACATCGGCACCTTGGTGCTTGGA
194 ACCATTGGCACCTAGGCCCTTGGTCGTACGGGAGCCTAAGGCACATCAGCACCTTGGTGCTTGGA
* * * * * *
89976843 TGTACGGAAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTACTGGAGCCTCGGGCACCA
259 TATACGGAAGCCTCGAACACCATCGGCAACCTAGGCCCTTCGTCGTACTGAAGCCTCGGACACCA
* *
89976908 TCAGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATTGGCACCTTGGTG
324 TCAGTAACCTAGGCCCCTGGTCGTGCGGAAGCCTCGGGCACCATCGGCACCTTGGTG
* *
89976965 CTTGGATGTGCGGGAGCCTCGAGTACCATTGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* ** * *
89977030 GCACCATCGGCAACCTAGGCCATCAGTCGTATGAGAGCCTCGGGACTATCAGCAACCTAGGCCCC
66 GCACCATCGGCAACCTAGGCC-TCGGTCGTGCGGGAGCCTCGGGACCATCAGCAACCTAGGCCCC
*
89977095 TAGTCTTGCGGGAGCCTCGGGCACTATCGGTAACATAGGCCCTTGGTCATGCGAGAGTCTCGGGA
130 TAGTCTTGCGGGAGCCTCGGGCACCATCGGTAACATAGGCCCTTGGTCATGCGAGAGTCTCGGGA
89977160 CCATTGGCACCTAGGCCCTTGGTCGTACGGGAGCCTAAGGCACCATCAGCACCTTGGTGCTTGGA
195 CCATTGGCACCTAGGCCCTTGGTCGTACGGGAGCCTAAGGCA-CATCAGCACCTTGGTGCTTGGA
* *
89977225 TATACGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTCGTCGTGCTGAAGCCTCGGACACCA
259 TATACGGAAGCCTCGAACACCATCGGCAACCTAGGCCCTTCGTCGTACTGAAGCCTCGGACACCA
* *
89977290 TCGGTAACCTAGGCCCCTGGTCGTGCGGAAGCTTCGGGCACCATCGGCACCTTGGTG
324 TCAGTAACCTAGGCCCCTGGTCGTGCGGAAGCCTCGGGCACCATCGGCACCTTGGTG
* * * *
89977347 CTTGGATGTGCGGGAGCCTCGGGCACCATCT-GCAATCTAGGCCCTTGGTCGTACAGGAGCCTCG
1 CTTGGATGTGCGGGAGCCTCGAGCACCAT-TGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * * *
89977411 AGTACCATTGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
65 GGCACCATCGGCAACCTAGGCCTC-GGTCGTGCGGGAGCCTCGGG-ACCATCAGCAACCTAGGCC
* *
89977476 CTTAGTCGTGCGGGAGCCTCGGGCACCATCGG
128 CCTAGTCTTGCGGGAGCCTCGGGCACCATCGG
89977508 CACCTTGATG
Statistics
Matches: 481, Mismatches: 57, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
381 128 0.27
382 306 0.64
383 47 0.10
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (380 bp):
CTTGGATGTGCGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCAACCTAGGCCTCGGTCGTGCGGGAGCCTCGGGACCATCAGCAACCTAGGCCCCT
AGTCTTGCGGGAGCCTCGGGCACCATCGGTAACATAGGCCCTTGGTCATGCGAGAGTCTCGGGAC
CATTGGCACCTAGGCCCTTGGTCGTACGGGAGCCTAAGGCACATCAGCACCTTGGTGCTTGGATA
TACGGAAGCCTCGAACACCATCGGCAACCTAGGCCCTTCGTCGTACTGAAGCCTCGGACACCATC
AGTAACCTAGGCCCCTGGTCGTGCGGAAGCCTCGGGCACCATCGGCACCTTGGTG
Found at i:89982114 original size:29 final size:29
Alignment explanation
Indices: 89982063--89982190 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
89982053 ATAGTAAGTC
*
89982063 CGCACAGTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* *
89982091 CGCACACTTAATGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
89982120 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* ** * *
89982148 TGCACACTTAGTGC-TATGCAATTTAAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
89982177 CGCACACTTAGTGC
1 CGCACACTTAGTGC
89982191 CAATCTCATG
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 42 0.48
29 45 0.52
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:89982138 original size:57 final size:57
Alignment explanation
Indices: 89982062--89982190 Score: 170
Period size: 57 Copynumber: 2.3 Consensus size: 57
89982052 TATAGTAAGT
* *
89982062 CCGCACAGTTAGTGTTATATAATCAAACTCGCACACTTAATGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAATGCTATACA-AATCAAAC
* * * * * *
89982119 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAATGCTATACAAATCAAAC
89982176 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
89982191 CAATCTCATG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 59 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAATGCTATACAAATCAAAC
Found at i:89988382 original size:17 final size:18
Alignment explanation
Indices: 89988356--89988394 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
89988346 CATAATGTGG
89988356 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
89988372 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
89988390 AAAAT
1 AAAAT
89988395 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:89988571 original size:15 final size:15
Alignment explanation
Indices: 89988551--89988581 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
89988541 AAAACAATAT
89988551 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
89988566 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
89988581 A
1 A
89988582 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:90003729 original size:5 final size:5
Alignment explanation
Indices: 90003705--90003738 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
90003695 TGCCGTGCTG
90003705 TGCCA TGCCA TGCCA TGCCA TGCCA T--CA TGCCA T
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA T
90003739 ACTTCATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.11
5 24 0.89
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.24
Consensus pattern (5 bp):
TGCCA
Found at i:90004495 original size:58 final size:58
Alignment explanation
Indices: 90004405--90004515 Score: 177
Period size: 58 Copynumber: 1.9 Consensus size: 58
90004395 CCTAATCCCA
** *
90004405 AAAGGTACAATTCGGGTACCGTTACATGTTCGGTACCCAATAATGAATGAATCGTCCT
1 AAAGGTACAATTCGAATACCGTTACATGTTCGGTACCCAACAATGAATGAATCGTCCT
* *
90004463 AAAGGTAGAATTCGAATACCGTTTCATGTTCGGTACCCAACAATGAATGAATC
1 AAAGGTACAATTCGAATACCGTTACATGTTCGGTACCCAACAATGAATGAATC
90004516 ATCCCTGTCC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (58 bp):
AAAGGTACAATTCGAATACCGTTACATGTTCGGTACCCAACAATGAATGAATCGTCCT
Found at i:90010092 original size:24 final size:24
Alignment explanation
Indices: 90010064--90010110 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
90010054 GCCGGTTAGG
*
90010064 TTCCCGGCGGTGCTCCGGTGAGCT
1 TTCCCAGCGGTGCTCCGGTGAGCT
90010088 TTCCCAGCGGTGCTCCGGTGAGC
1 TTCCCAGCGGTGCTCCGGTGAGC
90010111 CATCCTGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.06, C:0.34, G:0.36, T:0.23
Consensus pattern (24 bp):
TTCCCAGCGGTGCTCCGGTGAGCT
Found at i:90010443 original size:9 final size:9
Alignment explanation
Indices: 90010431--90010457 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
90010421 GGAGCCTCGG
90010431 GCACCATCA
1 GCACCATCA
90010440 GCACCATCA
1 GCACCATCA
90010449 GCACCATCA
1 GCACCATCA
90010458 ACACGATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.44, G:0.11, T:0.11
Consensus pattern (9 bp):
GCACCATCA
Found at i:90014080 original size:40 final size:40
Alignment explanation
Indices: 90014036--90014258 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 40
90014026 GCTCCTCGTT
*
90014036 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
90014076 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* *
90014116 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
*
90014156 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* * * * *
90014195 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
90014236 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
90014259 ACAGCATTCA
Statistics
Matches: 161, Mismatches: 12, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
38 3 0.02
39 44 0.27
40 105 0.65
41 8 0.05
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:90014220 original size:79 final size:80
Alignment explanation
Indices: 90014036--90014259 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 80
90014026 GCTCCTCGTT
* * *
90014036 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
90014100 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
*
90014116 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
90014180 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * *
90014195 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
90014256 CGGA
63 CGGA
90014260 CAGCATTCAA
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 12 0.09
79 60 0.47
80 55 0.43
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:90022055 original size:40 final size:40
Alignment explanation
Indices: 90022011--90022222 Score: 347
Period size: 40 Copynumber: 5.3 Consensus size: 40
90022001 GCTCCTCGTT
* * *
90022011 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
90022051 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
90022091 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
90022131 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
90022171 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
90022210 CAAATGCCTTCGG
1 CAAATGCCTTCGG
90022223 ATCTTAGTCT
Statistics
Matches: 165, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 35 0.21
40 128 0.78
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:90022268 original size:79 final size:80
Alignment explanation
Indices: 90022011--90022274 Score: 353
Period size: 80 Copynumber: 3.3 Consensus size: 80
90022001 GCTCCTCGTT
*
90022011 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
90022074 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
* *
90022091 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
90022156 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* ** *
90022171 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
90022234 GATATT-GTCACTTAGCA
65 GAT-TTAGTAAC-TCGCA
90022251 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
90022275 CAGCATTCAA
Statistics
Matches: 167, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
78 12 0.07
79 60 0.36
80 93 0.56
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:90031060 original size:58 final size:59
Alignment explanation
Indices: 90030968--90031089 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
90030958 AACGAACTCA
** * *
90030968 ATCCCAAAAGGTAGAATTCGGGTACTGTTACATGTTCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCGAATACTGTTACATGTCCGGTACCCAACAATGAATGAATC
* *
90031027 ATCCC-AAAGGTAGAATTCGAATACTGTTGCATGTCCGGTACCCAACAATGGATGAATC
1 ATCCCAAAAGGTAGAATTCGAATACTGTTACATGTCCGGTACCCAACAATGAATGAATC
*
90031085 GTCCC
1 ATCCC
90031090 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 51 0.91
59 5 0.09
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCGAATACTGTTACATGTCCGGTACCCAACAATGAATGAATC
Found at i:90033276 original size:24 final size:24
Alignment explanation
Indices: 90033213--90033276 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
90033203 AGGTTCCCGA
* *
90033213 CGGTGCTCCGGTGATCTATTCCGG
1 CGGTGCTCCGGTGAGCTATTCCAG
* *
90033237 CGGTGCTCTGGAGAGCT-TTCCCAG
1 CGGTGCTCCGGTGAGCTATT-CCAG
*
90033261 CGGTGCTCCAGTGAGC
1 CGGTGCTCCGGTGAGC
90033277 CATCCCGGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
23 2 0.06
24 30 0.94
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (24 bp):
CGGTGCTCCGGTGAGCTATTCCAG
Found at i:90033531 original size:43 final size:43
Alignment explanation
Indices: 90033483--90036296 Score: 2605
Period size: 43 Copynumber: 66.3 Consensus size: 43
90033473 GCCTTGGACG
* * * * *
90033483 CCATCGGCAACCTAGGACGTCGGTGGTGCGAGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * ** * * *
90033526 GCATCGAC-ACCTTGGTGCTCGGAT-GTGCGAGAGCCTAGAGCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCA
* * *
90033568 GCATCGGC-ACCTTGGTGCCC-CGGAT-GTGCGGGAGCCTC-AGACA
1 CCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGAG-CA
* * * * * * *
90033611 CCATCGACAAACTAGGCCATTGGTTGTGCCGGAGCCTTGAGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * * * *
90033654 CCATTGGCAACCTAGGCCCTTGATCGTGGGGGAGACTTGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * *
90033697 CCATCGACAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGA-CG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
*** * * * *
90033739 CCATCTAAAACTTAGGCCTTTGGTCATGTGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
*
90033782 CCATCGGCAACCTAGGCCCTTGGTCGTGGGGGAGCCTCG-GACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
* *
90033825 CCATCGGCAACCTAGGCCAC-TGGTCGTGCAGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCC-CTTGGTCGTGCGGGAGCCTCGAGCA
* * * *
90033868 CCATCGGCAACATAGGCCATTGGTCGTGCGAGAGCCTCG-GGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
*
90033910 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
*
90033953 CCATCGGC-ACCTAGACCCTTGGTCGTGCGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * *
90033995 CCA-CGGC-ACTTAGGCCATTGGCCGTGCGGGACCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * *
90034036 CCATCGGGAACCTAGGCCCTTGGTCGTGCGGGAGACACGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90034079 CCATCGGTAACCTAGGCCCTCGGTCGTGCGAGAGCCTCG-GACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
* * * *
90034122 CCATCGGC-GCCTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * ** *
90034164 CCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCA
* * * *
90034206 CCATTGGCAACCTAGGCCCTTGGTCGTACGAGAGCCTCG-GGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90034248 CCATCGGCAACCTAGGCCTTTGGTCGTGCGGCAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * * *
90034291 CCATTGGTAACCTAGGCCCATGGTCGTGCGAGAGCCTCG-GGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* *
90034333 CAATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-AGACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
* * * ** * *
90034376 CCATTGG-TACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCA
* * * *
90034418 CCATCGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTC-AGACC
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
* * * *
90034461 CCATCGGCAACCTAGTCCCCTGGTCGTACGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * *
90034504 CCATCGGCAACCTAGGCCTTTGGTCGTACGAGAGCCTCG-GGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * *
90034546 CCATTGGC-ACCTAGGCTCTTGGTTGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90034588 CCATCGGCAACCTAGGCCCTTAGTCGTGCGAGAGCCTCG-GGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* *
90034630 CCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
90034673 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
** * *
90034715 CCA-CAAC-AGCTAGGCCCTTGGTCATGCGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
** *
90034756 CCA-CAAC-AGCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * ** * *
90034797 CCATCGGCAACCTAGGCTCTTGGTCGTCCAAGAGCCACGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* *
90034840 CCATCGGCAACCTAGGCCTTTGGTCGTGTGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90034883 CCATCGGC-GCCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* ** *
90034925 CCATCGGC-ACCTTGGTGCTTGGAT-GTACGGGAGCCTC-AGCCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAG-CA
* * *
90034967 CCATCGGCATCCTAGGCCCTTAGTCTTGCGGGAGCCTTCG-GCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGAGCA
* * * * *
90035010 CCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCGT-TAGGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
*
90035052 CCATCGGCAATCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
* * * ** *
90035095 CCATTGG-TACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCA
* * * * * *
90035137 CCATTGGGAAGCTAGGCCCTTGGTCGTGTGGGAGCCTCGTGCC
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90035180 CCATCGGTAACCTAGTACCC-TGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAG-GCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90035223 CCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTCG-GGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90035265 CCATTGGC-ACCTAGGCCCTTGGTCGTGCGGGAGGCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* ** *
90035307 CCATCGGC-ACCTTGGTGCTTGGAT-GTGCAGGAGCCTCG-GACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAG-CA
* * * *
90035349 CCATCGGAAACCTAGGCCCGTGGTCGTGCGGGAGCCACGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90035392 CCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTTG-GATA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
** *
90035435 CCATCGG-TGCCTAGGCCCTTGGTCGTGCAGGAGCCTCG-GACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
* * *
90035477 CCATCGGTAACCTTGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * * *
90035520 CTATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * * *
90035563 CCATCGGCAACTTGGTGCCTTTGATC-TGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAG-GCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * *
90035606 CCATCGGC-GCCTAGGCTCTTGGTCGTGCAGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* ** **
90035648 CCATCGGC-ACCTGGGTGCTTGGAT-GTGTAGGAGCCTCG-GCCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAG-CA
* *
90035690 CCATCGGCAACCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * * *
90035733 CCATTGGCAACCTAGGCCCTTGGTCATACGAGAGCCTCG-GGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* **
90035775 CCATCGGCAACCTAGGCCCCTGGTAATGCGGGAGCCTCG-GACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
* * * ** * * *
90035818 CCATTGG-TACCTTGGTGCTTAGAT-GTGCGAGAACCTCGAGCA
1 CCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGAGCA
* *
90035860 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-AGGCC
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCA
* * * *
90035903 CCATCGGGAA-CTGAGTCCCCTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90035946 CCATCGGCAACCTAGGCCCTTGGCCGTGCGAGAGCCTCG-GGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90035988 CCATTGGC-ACCTAGGCTCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* *
90036030 CCATCGGC-ACCTTAGTG--CTTGGAT-GTGCGGGAGCCTCAAACA
1 CCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGAGCA
* * *
90036072 CCATCGGCAACCTGGGCCCTTGGTCGTGCGGGAGCCACGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * *
90036115 CCATCGGCAACCTCGGCCCTTGGTCGTGCGAGAGCCTCAAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
** * * **
90036158 CCATCGG-TGCATAGGCCCTTGGTCATGCAAGAGCCTCG-GACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CA
*
90036200 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
* * * * * *
90036243 CCATCGGTAAGCTAGGCCCCTAGTTGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
90036286 CCATCGGCAAC
1 CCATCGGCAAC
90036297 TTGGTGCCTC
Statistics
Matches: 2283, Mismatches: 402, Indels: 172
0.80 0.14 0.06
Matches are distributed among these distances:
41 204 0.09
42 867 0.38
43 1183 0.52
44 29 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
Found at i:90033560 original size:42 final size:43
Alignment explanation
Indices: 90033508--90033619 Score: 156
Period size: 42 Copynumber: 2.6 Consensus size: 43
90033498 GACGTCGGTG
*
90033508 GTGCGAGAGCCTCGAGCAGCATCGACACCTTGGTG-CTCGGAT
1 GTGCGAGAGCCTCGAGCAGCATCGACACCTTGGTGCCCCGGAT
* *
90033550 GTGCGAGAGCCTAGAGCAGCATCGGCACCTTGGTGCCCCGGAT
1 GTGCGAGAGCCTCGAGCAGCATCGACACCTTGGTGCCCCGGAT
* *
90033593 GTGCGGGAGCCTC-AGACACCATCGACA
1 GTGCGAGAGCCTCGAG-CAGCATCGACA
90033620 AACTAGGCCA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 35 0.57
43 26 0.43
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.16
Consensus pattern (43 bp):
GTGCGAGAGCCTCGAGCAGCATCGACACCTTGGTGCCCCGGAT
Found at i:90033793 original size:85 final size:86
Alignment explanation
Indices: 90033458--90036296 Score: 2769
Period size: 85 Copynumber: 33.4 Consensus size: 86
90033448 CACATTACTG
* * * * * * * * * *
90033458 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTCGGTGGTGCGAGAGCCTCGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* * * **
90033523 GCAGCATCGAC-ACCTTGGTG
66 GCACCATCGGCAACCTAGGCC
* * * * * * *
90033543 CTCGGAT-GTGCGAGAGCCTAGAGCAGCATCGGC-ACCTTGGTGCCC-CGGAT-GTGCGGGAGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCC
* *
90033604 TC-AGACACCATCGACAAACTAGGCC
62 TCGAG-CACCATCGGCAACCTAGGCC
* * * * * * * * * * * *
90033629 ATTGGTTGTGCCGGAGCCTTGAGTACCATTGGCAACCTAGGCCCTTGATCGTGGGGGAGACTTGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
*
90033694 GCACCATCGACAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * * * *** * * * *
90033715 CCTGGTCGTGCGAGAGCCTC-GACGCCATCTAAAACTTAGGCCTTTGGTCATGTGGGAGCCTCGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
90033779 GCACCATCGGCAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * *
90033800 CTTGGTCGTGGGGGAGCCTCGGACACCATCGGCAACCTAGGCCAC-TGGTCGTGCAGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-CTTGGTCGTGCGGGAGCCTCG
* *
90033864 GGCACCATCGGCAACATAGGCC
65 AGCACCATCGGCAACCTAGGCC
* * *
90033886 ATTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
*
90033950 GCACCATCGGC-ACCTAGACC
66 GCACCATCGGCAACCTAGGCC
* * * * *
90033970 CTTGGTCGTGCGGGAGCCTCGAGCACCA-CGGC-ACTTAGGCCATTGGCCGTGCGGGACCCTCGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
*
90034033 GCACCATCGGGAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * * * *
90034054 CTTGGTCGTGCGGGAGACACGGGCACCATCGGTAACCTAGGCCCTCGGTCGTGCGAGAGCCTCG-
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* *
90034118 GACACCATCGGC-GCCTAAGCC
66 G-CACCATCGGCAACCTAGGCC
* * * **
90034139 CTTGGTCGTGCAGGAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* *
90034202 GGCACCATTGGCAACCTAGGCC
65 AGCACCATCGGCAACCTAGGCC
* * * * *
90034224 CTTGGTCGTACGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCTTTGGTCGTGCGGCAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* *
90034288 GCACCATTGGTAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * * *
90034309 CATGGTCGTGCGAGAGCCTCGGG-ACAATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-A
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* * * **
90034372 GACACCATTGG-TACCTTGGTG
66 G-CACCATCGGCAACCTAGGCC
* * * *
90034393 CTTGGAT-GTGCGGGAGCCTCGGGTACCATCGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTC-
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
90034456 AGACCCCATCGGCAACCTAGTCC
65 AG-CACCATCGGCAACCTAGGCC
* * * * *
90034479 CCTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTTGGTCGTACGAGAGCCTCG-
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* * *
90034543 GGACCATTGGC-ACCTAGGCT
66 GCACCATCGGCAACCTAGGCC
* * *
90034563 CTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTCGTGCGAGAGCCTCG-
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* *
90034627 GGACCATCGACAACCTAGGCC
66 GCACCATCGGCAACCTAGGCC
90034648 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
** *
90034712 GCACCA-CAAC-AGCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * ** *
90034731 CTTGGTCATGCGGGAGCCTCGAGCACCA-CAAC-AGCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
*
90034794 GCACCATCGGCAACCTAGGCT
66 GCACCATCGGCAACCTAGGCC
* ** * * *
90034815 CTTGGTCGTCCAAGAGCCACGGGCACCATCGGCAACCTAGGCCTTTGGTCGTGTGGGAGCCTCGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
*
90034880 GCACCATCGGC-GCCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * ** *
90034900 CTTGGTCGTGCAGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTACGGGAGCCTC-
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
*
90034962 AGCCACCATCGGCATCCTAGGCC
65 AG-CACCATCGGCAACCTAGGCC
* * * * * *
90034985 CTTAGTCTTGCGGGAGCCTTC-GGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCGT-T
1 CTTGGTCGTGCGGGAGCC-TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
90035048 AGGACCATCGGCAATCTAGGCC
65 AGCACCATCGGCAACCTAGGCC
* * * * **
90035070 CTTGGTCGTGCGGGAGCCTCGGACACCATTGG-TACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* * * *
90035133 GGCACCATTGGGAAGCTAGGCC
65 AGCACCATCGGCAACCTAGGCC
* * * * *
90035155 CTTGGTCGTGTGGGAGCCTCGTGCCCCATCGGTAACCTAGTACCC-TGGTCGTGCGGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGGTCGTGCGGGAGCCTCG
*
90035219 GGCACCATCGGCAACCTAGGCC
65 AGCACCATCGGCAACCTAGGCC
* * * * *
90035241 CTTGGTCATGCGAGAGCCTCGGG-ACCATTGGC-ACCTAGGCCCTTGGTCGTGCGGGAGGCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* **
90035304 GCACCATCGGC-ACCTTGGTG
66 GCACCATCGGCAACCTAGGCC
* * * * *
90035324 CTTGGAT-GTGCAGGAGCCTCGGACACCATCGGAAACCTAGGCCCGTGGTCGTGCGGGAGCCACG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
*
90035388 GGCACCATCGGCAACCTAGGCC
65 AGCACCATCGGCAACCTAGGCC
* * ** ** *
90035410 CTTGGTCGTGCAGGAGCCTTGGATACCATCGG-TGCCTAGGCCCTTGGTCGTGCAGGAGCCTCG-
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* *
90035473 GACACCATCGGTAACCTTGGCC
66 G-CACCATCGGCAACCTAGGCC
* * * *
90035495 CTTGGTCGTGCGGGAGCCTCGGGCACTATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* * *
90035560 GTACCATCGGCAACTTGGTGCC
66 GCACCATCGGCAACCTAG-GCC
* * * * * *
90035582 TTTGATC-TGCGGGAGCCTCGGGCACCATCGGC-GCCTAGGCTCTTGGTCGTGCAGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* **
90035645 GCACCATCGGC-ACCTGGGTG
66 GCACCATCGGCAACCTAGGCC
** * *
90035665 CTTGGAT-GTGTAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCTTGCGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
90035729 GGCACCATTGGCAACCTAGGCC
65 AGCACCATCGGCAACCTAGGCC
* * * * **
90035751 CTTGGTCATACGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTAATGCGGGAGCCTCG-
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* * * **
90035814 GACACCATTGG-TACCTTGGTG
66 G-CACCATCGGCAACCTAGGCC
* * * * *
90035835 CTTAGAT-GTGCGAGAACCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-
1 CTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * *
90035898 AGGCCCCATCGGGAA-CTGAGTCC
65 A-GCACCATCGGCAACCT-AGGCC
* * *
90035921 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGCCGTGCGAGAGCCTCG-
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* * *
90035985 GGACCATTGGC-ACCTAGGCT
66 GCACCATCGGCAACCTAGGCC
90036005 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTAGTG--CTTGGAT-GTGCGGGAGCCT
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCT
* * *
90036066 CAAACACCATCGGCAACCTGGGCC
63 CGAGCACCATCGGCAACCTAGGCC
* * * *
90036090 CTTGGTCGTGCGGGAGCCACGGGCACCATCGGCAACCTCGGCCCTTGGTCGTGCGAGAGCCTCAA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
** *
90036155 GCACCATCGG-TGCATAGGCC
66 GCACCATCGGCAACCTAGGCC
* ** * *
90036175 CTTGGTCATGCAAGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
* *
90036240 GCACCATCGGTAAGCTAGGCC
66 GCACCATCGGCAACCTAGGCC
* * *
90036261 CCTAGTTGTGCGGGAGCCTCGGGCACCATCGGCAAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
90036297 TTGGTGCCTC
Statistics
Matches: 2272, Mismatches: 398, Indels: 167
0.80 0.14 0.06
Matches are distributed among these distances:
82 38 0.02
83 124 0.05
84 468 0.21
85 1024 0.45
86 604 0.27
87 14 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.19
Consensus pattern (86 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA
GCACCATCGGCAACCTAGGCC
Found at i:90036363 original size:128 final size:126
Alignment explanation
Indices: 90033593--90036324 Score: 2255
Period size: 128 Copynumber: 21.5 Consensus size: 126
90033583 TGCCCCGGAT
* * * * * * * *
90033593 GTGCGGGAGCCTCAGACACCATCGACAAAC-TAGGCCAT-TGGTTGTGCCGGAGCCTTGAGTACC
1 GTGCGGGAGCCTCGGGCACCATCGGC-AACTTGGGCC-TCTGGTCGTGCGGGAGCCTCG-GCACC
* * * * * * *
90033656 ATTGGCAACCTAGGCCCTTGATCGTGGGGGAGACTTGGGCACCATCGACAACCTAGGCCCCTGGT
63 ATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
90033721 C
126 C
* * * *** * * * *
90033722 GTGCGAGAGCCTC-GACGCCATCTAAAACTTAGGCCTTTGGTCATGTGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTCG-GCACCAT
* *
90033786 CGGCAACCTAGGCCCTTGGTCGTGGGGGAGCCTCGGACACCATCGGCAACCTAGGCCAC-TGGTC
65 CGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-CTTGGTC
* * * * *
90033850 GTGCAGGAGCCTCGGGCACCATCGGCAACATAGGCCAT-TGGTCGTGCGAGAGCCTCGGGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCC-TCTGGTCGTGCGGGAGCCTCGGCACCAT
*
90033914 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGACCCTTGGTC
65 CGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90033977 GTGCGGGAGCCTCGAGCACCA-CGGC-ACTTAGGCCAT-TGGCCGTGCGGGACCCTCGAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCC-TCTGGTCGTGCGGGAGCCTCG-GCACCA
* * * * *
90034039 TCGGGAACCTAGGCCCTTGGTCGTGCGGGAGACACGGGCACCATCGGTAACCTAGGCCCTCGGTC
64 TC-GGCACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** ** * *
90034104 GTGCGAGAGCCTCGGACACCATCGGCGCCTAAGCCCT-TGGTCGTGCAGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTC-GGCACCAT
* * ** *
90034168 CGACACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTC
65 CGGCACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
90034231 GTACGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCTTTGGTCGTGCGGCAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTC-GGCACCAT
* * * * * *
90034295 TGGTAACCTAGGCCCATGGTCGTGCGAGAGCCTCGGG-ACAATCGGCAACCTAGGCCCCTGGTC
65 CGG-CACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
90034358 GTGCGGGAGCCTCAGACACCATTGGTACCTTGGTG-CT-TGGAT-GTGCGGGAGCCTCGGGTACC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGG-GCCTCTGG-TCGTGCGGGAGCCTC-GGCACC
* * * * * * * *
90034420 ATCGGTAACCTAGGCCCCTGGTCATGCGGGAGCCTCAGACCCCATCGGCAACCTAGTCCCCTGGT
63 ATCGG-CACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
90034485 C
126 C
* * * * * * * *
90034486 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTTGGTCGTACGAGAGCCTCGGGACCATT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTCGGCACCATC
* *
90034551 GGCACCTAGGCTCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTAGTC
66 GGCACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90034613 GTGCGAGAGCCTCGGG-ACCATCGACAACCTAGGCC-CTTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTC-TGGTCGTGCGGGAGCCTC-GGCACCA
* ** *
90034676 TCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA-CAAC-AGCTAGGCCCTTGGTC
64 TCGGCACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * * *
90034738 ATGCGGGAGCCTCGAGCACCA-CAACAGCTAGGCCCT-TGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTCG-GCACCAT
* * ** * *
90034801 CGGCAACCTAGGCTCTTGGTCGTCCAAGAGCCACGGGCACCATCGGCAACCTAGGCCTTTGGTC
65 CGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * * *
90034865 GTGTGGGAGCCTCGAGCACCATCGGCGCCTAGGCCCT-TGGTCGTGCAGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTC-GGCACCAT
* ** * * * * *
90034929 CGGCACCTTGGTGCTTGGATGTACGGGAGCCTCAGCCACCATCGGCATCCTAGGCCCTTAGTC
65 CGGCACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
90034992 TTGCGGGAGCCTTC-GGCACCATTGGCAACCTAGGCC-CTTGGTCGTGCGAGAGCGTTAGG-ACC
1 GTGCGGGAGCC-TCGGGCACCATCGGCAACTTGGGCCTC-TGGTCGTGCGGGAGC-CTCGGCACC
* * * * * **
90035054 ATCGGCAATCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGG-TACCTTGGTGCTTGGA
63 ATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-
90035118 T-
125 TC
* * * * * *
90035119 GTGCGGGAGCCTCGGGCACCATTGGGAAGCTAGGCCCT-TGGTCGTGTGGGAGCCTCGTGCCCCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAA-CTTGGGCCTCTGGTCGTGCGGGAGCCTCG-GCACCA
* *
90035183 TCGGTAACCTAGTACCC-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
64 TCGG-CACCTAG-GCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
90035247 C
126 C
* * * * * * *
90035248 ATGCGAGAGCCTCGGG-ACCATTGGCACCTAGGCCCT-TGGTCGTGCGGGAGGCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTC-GGCACCAT
* ** * * * *
90035311 CGGCACCTTGGTGCTTGGATGTGCAGGAGCCTCGGACACCATCGGAAACCTAGGCCCGTGGTC
65 CGGCACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
90035374 GTGCGGGAGCCACGGGCACCATCGGCAACCTAGGCC-CTTGGTCGTGCAGGAGCCTTGGATACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTC-TGGTCGTGCGGGAGCCTCGG-CACCA
** * * * *
90035438 TCGGTGCCTAGGCCCTTGGTCGTGCAGGAGCCTCGGACACCATCGGTAACCTTGGCCCTTGGTC
64 TCGGCACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
90035502 GTGCGGGAGCCTCGGGCACTATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTC-GGCACCAT
* * * * * * *
90035567 CGGCAACTTGGTGCCTTTGATCTGCGGGAGCCTCGGGCACCATCGGC-GCCTAGGCTCTTGGTC
65 CGGC-ACCTAG-GCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
90035630 GTGCAGGAGCCTCGGGCACCATCGGC-ACCTGGGTGCT-TGGAT-GTGTAGGAGCCTCGGCCACC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGG-CCTCTGG-TCGTGCGGGAGCCTCGG-CACC
* *
90035692 ATCGGCAACCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGT
63 ATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
90035757 C
126 C
* * * * * * **
90035758 ATACGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTAATGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTCGG-CACCAT
* * * ** * * * *
90035822 TGGTACCTTGGTGCTTAGATGTGCGAGAACCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
65 CGGCACCTAGGCCCTT-GGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
90035885 GTGCGAGAGCCTCAGGCCCCATCGGGAAC-TGAGTCCCCTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTG-GGCCTCTGGTCGTGCGGGAGCCTC-GGCACCA
* * * *
90035949 TCGGCAACCTAGGCCCTTGGCCGTGCGAGAGCCTCGGG-ACCATTGGC-ACCTAGGCTCTTGGTC
64 TCGGC-ACCTAGGCCCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
90036012 GTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTG-CT-TGGAT-GTGCGGGAGCCTCAAACACC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTT-GGGCCTCTGG-TCGTGCGGGAGCCTC-GGCACC
* * *
90036074 ATCGGCAACCTGGGCCCTTGGTCGTGCGGGAGCCACGGGCACCATCGGCAACCTCGGCCCTTGGT
63 ATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
90036139 C
126 C
* ** * * * **
90036140 GTGCGAGAGCCTCAAGCACCATCGGTGC-A-TAGGCCCT-TGGTCATGCAAGAGCCTCGGACACC
1 GTGCGGGAGCCTCGGGCACCATC-G-GCAACTTGGGCCTCTGGTCGTGCGGGAGCCTCGG-CACC
* * * *
90036202 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAGCTAGGCCCCTAGT
63 ATCGGC-ACCTAGGCCCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
*
90036267 T
126 C
* *
90036268 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGTGCCTCAGATC-TGCGGGAGCCTCG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACTTGG-GCCTCTGGTCGTGCGGGAGCCTCG
90036325 AGCAGCATTG
Statistics
Matches: 2124, Mismatches: 386, Indels: 186
0.79 0.14 0.07
Matches are distributed among these distances:
123 1 0.00
124 29 0.01
125 93 0.04
126 238 0.11
127 747 0.35
128 837 0.39
129 166 0.08
130 13 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.19
Consensus pattern (126 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACTTGGGCCTCTGGTCGTGCGGGAGCCTCGGCACCATC
GGCACCTAGGCCCTTGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:90038602 original size:40 final size:40
Alignment explanation
Indices: 90038547--90038740 Score: 262
Period size: 40 Copynumber: 4.8 Consensus size: 40
90038537 GCATCTGCCG
*
90038547 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
* *
90038587 CGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
* *
90038627 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
* ** * * *
90038667 CGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
* * *
90038707 CGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
90038741 CGTGTATTCG
Statistics
Matches: 138, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
Found at i:90042372 original size:49 final size:47
Alignment explanation
Indices: 90042210--90042696 Score: 751
Period size: 47 Copynumber: 10.1 Consensus size: 47
90042200 TATGAAATGA
90042210 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATG
90042261 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
90042308 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
90042357 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
90042406 TGAT-AGCGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
90042453 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* * *
90042500 TGATAGGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
90042547 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATCTATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
90042594 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * *
90042643 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
90042690 TGATAAG
1 TGATAAG
90042697 TCCCGAAGGG
Statistics
Matches: 410, Mismatches: 20, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
47 236 0.58
48 4 0.01
49 131 0.32
51 39 0.10
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:90042394 original size:96 final size:96
Alignment explanation
Indices: 90042210--90042696 Score: 777
Period size: 96 Copynumber: 5.1 Consensus size: 96
90042200 TATGAAATGA
90042210 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAAT
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAAT
90042275 GGCCGATGTGATGAATGTGAAAGTGTATATATG
64 GGCCGATGTGATGAATGTGAAAGTGTATATATG
90042308 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
90042373 CCGATGTGATGAATGTGAAAGTGTATATATATG
66 CCGATGTGATGAATGTGAAAGTG--TATATATG
90042406 TGAT-AGCGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
1 TGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
90042468 GCCGATGTGATGAATGTGAAAGTGTATATATG
65 GCCGATGTGATGAATGTGAAAGTGTATATATG
* * *
90042500 TGATAGGGCCTAATGGCCAATGTGGTGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
*
90042563 CCGATGTGATGAATGTGAAAGTGTATCTATG
66 CCGATGTGATGAATGTGAAAGTGTATATATG
* * * * *
90042594 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
* * * *
90042659 CCAACGTGATGGATGTGAAAGTGTATAAATG
66 CCGATGTGATGAATGTGAAAGTGTATATATG
90042690 TGATAAG
1 TGATAAG
90042697 TCCCGAAGGG
Statistics
Matches: 366, Mismatches: 17, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
94 131 0.36
95 1 0.00
96 149 0.41
97 2 0.01
98 83 0.23
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:90042569 original size:22 final size:22
Alignment explanation
Indices: 90042544--90042619 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
90042534 AAGTGTATAT
90042544 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ** *
90042566 ATGTGATGAATGTGAAAGTGTATCT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
90042591 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
90042613 ATGTGAT
1 ATGTGAT
90042620 GAATGTGGAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:90044795 original size:43 final size:43
Alignment explanation
Indices: 90044747--90044935 Score: 369
Period size: 43 Copynumber: 4.4 Consensus size: 43
90044737 TTGGTTTTCA
90044747 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
90044790 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
90044833 GCACTAAGTGTGCGGGCAATAGGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
90044876 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
90044919 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
90044936 TTGAAATGCA
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 144 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:90044954 original size:29 final size:29
Alignment explanation
Indices: 90044919--90044990 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
90044909 TGTGAGATTG
* *
90044919 GCACTAAGTGTGCGGGCTTGAAA-TGCATA
1 GCACTAAGTGTGCGAG-TTGAAAGTACATA
* *
90044948 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGAGTTGAAAGTACATA
90044977 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
90044991 TGGTTGATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAGTACATA
Found at i:90045424 original size:40 final size:40
Alignment explanation
Indices: 90045301--90045576 Score: 272
Period size: 40 Copynumber: 6.9 Consensus size: 40
90045291 TCGAATGATG
** *
90045301 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
90045341 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
90045381 TCCGGGCTAAGACCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
90045421 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
90045461 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
90045501 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
90045541 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
90045577 CGTGTATTCG
Statistics
Matches: 201, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
40 182 0.91
41 19 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:90045517 original size:120 final size:120
Alignment explanation
Indices: 90045339--90045576 Score: 309
Period size: 120 Copynumber: 2.0 Consensus size: 120
90045329 TAAGTGACCA
* *
90045339 TATCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGACCCGAAGAGCA
1 TATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGCTAAGACCCGAAGAGCA
* * *
90045404 TTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATG
66 TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGATG
* * * * *
90045459 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATATCCGTGCTAA-ACCCCGAAGAG
1 TATCCGGACTAAGATCCGAAG-GCATTCGTGCGAGTGACTAAATCCGGGCTAAGA-CCCGAAGAG
* * * * *
90045522 CATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
64 CATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGA
90045577 CGTGTATTCG
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
119 1 0.01
120 87 0.86
121 13 0.13
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
TATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGCTAAGACCCGAAGAGCA
TTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGATG
Found at i:90049142 original size:47 final size:48
Alignment explanation
Indices: 90049045--90049342 Score: 424
Period size: 47 Copynumber: 6.1 Consensus size: 48
90049035 TATGAAATGA
90049045 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-----ATATATATG
90049098 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATG
90049145 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATG
90049194 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATG
90049240 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATG
* * * * * * * * *
90049289 TGACAGGGCCGAGTGGCCAACGTTATGGATGTGAAAGTG-TATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATG
90049336 TGATAAG
1 TGATAAG
90049343 TCCCGAAGGG
Statistics
Matches: 229, Mismatches: 11, Indels: 16
0.89 0.04 0.06
Matches are distributed among these distances:
46 12 0.05
47 93 0.41
48 34 0.15
49 51 0.22
53 39 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (48 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATG
Found at i:90049245 original size:95 final size:95
Alignment explanation
Indices: 90049045--90049342 Score: 470
Period size: 95 Copynumber: 3.1 Consensus size: 95
90049035 TATGAAATGA
90049045 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATATGTGATAAGGCCTA
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATATGTGAT-AGGCCTA
90049110 ATGGCCGATGTGATGAATGTGAAAGTGTATATATG
61 ATGGCCGATGTGATGAATGTGAAAGTGTATATATG
90049145 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGC
90049210 CGATGTGATGAATGTGAAAGTGTATATATG
66 CGATGTGATGAATGTGAAAGTGTATATATG
* * *
90049240 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAGTGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA-GGCCTAATGG
* * * * *
90049305 CCAACGTTATGGATGTGAAAGTGTATAAATG
65 CCGATGTGATGAATGTGAAAGTGTATATATG
90049336 TGATAAG
1 TGATAAG
90049343 TCCCGAAGGG
Statistics
Matches: 189, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
95 95 0.50
96 55 0.29
100 39 0.21
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (95 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATG
Found at i:90049337 original size:142 final size:141
Alignment explanation
Indices: 90049039--90049340 Score: 426
Period size: 142 Copynumber: 2.1 Consensus size: 141
90049029 TTCGAATATG
90049039 AAATGATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATATGTGATAA
1 AAATG-TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-----ATATATATGTGATAA
* * * *
90049104 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
59 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTG
90049169 ATGAATGTGAAAGTGTAT
124 ATGAATGTGAAAGTGTAT
90049187 ATATATGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCT
1 A-A-ATGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCT
* * *
90049251 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTTATG
64 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATGGCCAACGTGATG
*
90049316 GATGTGAAAGTGTAT
127 AATGTGAAAGTGTAT
90049331 AAATGTGATA
1 AAATGTGATA
90049341 AGTCCCGAAG
Statistics
Matches: 142, Mismatches: 8, Indels: 14
0.87 0.05 0.09
Matches are distributed among these distances:
142 55 0.39
143 1 0.01
144 43 0.30
148 35 0.25
149 5 0.04
150 3 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (141 bp):
AAATGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATG
TGAAAGTGTAT
Found at i:90051001 original size:85 final size:85
Alignment explanation
Indices: 90050892--90051499 Score: 570
Period size: 85 Copynumber: 7.1 Consensus size: 85
90050882 GGTGTTACAT
*
90050892 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTGCCTAGGCC
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCC
* *
90050957 CTTGCTCTTGCAGGAGCCTC
66 CTTGGTCGTGCAGGAGCCTC
* * *
90050977 GGACACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGC
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGT-ACCTAGGC
* *
90051042 CCCTAGTCGTGC-GAGAGCCTC
65 CCTTGGTCGTGCAG-GAGCCTC
* ** * * * * **
90051063 GGGCACCATCGGCAA-CTTGATTCCTCGGAT-TTGCGGGATCCTCGAGCACCATCGGCGCCTAGG
1 GGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTACCTAGG
90051126 CCCTTGGTCGTGCAGGAGCCTC
64 CCCTTGGTCGTGCAGGAGCCTC
* ** * * * * *
90051148 GGGCACCATCGGC-ACCTTGGTGCTTGGAT-ATACGGGAGCCTCGGGCACCATCGGCACCTTGGT
1 GGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTACCTAGGC
* *
90051211 GCTTGGAT-GT-CCGAGAGCCTC
65 CCTTGG-TCGTGCAG-GAGCCTC
* * * ** * * * * *
90051232 GGCCACTATCGGAAACCTAATCCCTTGGTCTTGCGAGAGGCTCGAGCACCATCGGCAACCTAGGC
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-TACCTAGGC
* *
90051297 CCCTGGTCGTGCGGGAGCCTC
65 CCTTGGTCGTGCAGGAGCCTC
** *
90051318 GGGCACCATCAACAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGC
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGT-ACCTAGGC
*
90051383 TCC-TGGTCGTGCGGGAGCCTC
65 -CCTTGGTCGTGCAGGAGCCTC
** * * * * * **
90051404 GGGCACCATCGG-TGCCTAAGCCCTTGGTCATGCCGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCC
*
90051468 CTTGGAT-GTACAGGAGCCTC
66 CTTGG-TCGTGCAGGAGCCTC
90051488 GGGCACCATCGG
1 GGGCACCATCGG
90051500 TGTGATAGTC
Statistics
Matches: 427, Mismatches: 79, Indels: 35
0.79 0.15 0.06
Matches are distributed among these distances:
83 3 0.01
84 92 0.22
85 167 0.39
86 160 0.37
87 5 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (85 bp):
GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCC
CTTGGTCGTGCAGGAGCCTC
Found at i:90051012 original size:43 final size:43
Alignment explanation
Indices: 90050892--90051500 Score: 537
Period size: 43 Copynumber: 14.3 Consensus size: 43
90050882 GGTGTTACAT
* *
90050892 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
* * *
90050935 GGGCACCATCGGT-GCCTAGGCCCTTGCTCTTGCAGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
*
90050977 GGACACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
* *
90051020 GGGCACCATCGGTAACCTAGGCCCCTAGTCGTGC-GAGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAG-GAGCCTC
* * ** * * * *
90051063 GGGCACCATCGGCAA-CTTGATTCCTCGGAT-TTGCGGGATCCTC
1 GGGCACCATCGGTAACCTAG-GCCCTTGG-TCGTGCAGGAGCCTC
* **
90051106 GAGCACCATCGG-CGCCTAGGCCCTTGGTCGTGCAGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
* * ** * * *
90051148 GGGCACCATCGG-CACCTTGGTGCTTGGAT-ATACGGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCAGGAGCCTC
* * ** *
90051190 GGGCACCATCGG-CACCTTGGTGCTTGGAT-GT-CCGAGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCAG-GAGCCTC
* * * ** * *
90051232 GGCCACTATCGGAAACCTAATCCCTTGGTCTTGC-GAGAGGCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAG-GAGCCTC
* * * *
90051275 GAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
***
90051318 GGGCACCATCAACAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
*
90051361 GGGCACCATCGGTAACCTAGGCTCC-TGGTCGTGCGGGAGCCTC
1 GGGCACCATCGGTAACCTAGGC-CCTTGGTCGTGCAGGAGCCTC
* * * *
90051404 GGGCACCATCGGT-GCCTAAGCCCTTGGTCATGCCGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
* * ** *
90051446 GGGCACCATCGG-CACCTTGGTGCTTGGAT-GTACAGGAGCCTC
1 GGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCAGGAGCCTC
90051488 GGGCACCATCGGT
1 GGGCACCATCGGT
90051501 GTGATAGTCC
Statistics
Matches: 467, Mismatches: 81, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
41 5 0.01
42 201 0.43
43 255 0.55
44 6 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (43 bp):
GGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
Found at i:90051124 original size:128 final size:129
Alignment explanation
Indices: 90050892--90051500 Score: 623
Period size: 128 Copynumber: 4.8 Consensus size: 129
90050882 GGTGTTACAT
** *
90050892 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTGCCTAGGCC
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGCC
* *
90050957 CTT-GCTCTTGCAGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
66 CTTGGATCGTGCAGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
* * * * * **
90051020 GGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATCGGCAACTTGATT
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTG-GC
* * * * **
90051085 CCTCGGAT-TTGCGGGATCCTC-GAGCACCATCGG-CGCCTAGGCCCTTGGTCGTGCAGGAGCCT
65 CCTTGGATCGTGCAGGAGCCTCGGA-CACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCT
90051147 C
129 C
* ** * * *
90051148 GGGCACCATCGGC-ACCTTGGTGCTTGGAT-ATACGGGAGCCTCGGGCACCATCGGCACCTTGGT
1 GGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGC
* * * * * ** * *
90051211 GCTTGGAT-GT-CCGAGAGCCTCGGCCACTATCGGAAACCTAATCCCTTGGTCTTGC-GAGAGGC
65 CCTTGGATCGTGCAG-GAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCAG-GAGCC
90051273 TC
128 TC
* * ** *
90051275 GAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCAACAACCTAGGC
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGC
* *
90051340 CCTTGG-TCGTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCTCC-TGGTCGTGCGGGAGCCT
65 CCTTGGATCGTGCAGGAGCCTCGGACACCATCGGTAACCTAGGC-CCTTGGTCGTGCAGGAGCCT
90051403 C
129 C
** * * * **
90051404 GGGCACCATCGG-TGCCTAAGCCCTTGGTCATGCCGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGCC
* *
90051468 CTTGGAT-GTACAGGAGCCTCGGGCACCATCGGT
66 CTTGGATCGTGCAGGAGCCTCGGACACCATCGGT
90051501 GTGATAGTCC
Statistics
Matches: 392, Mismatches: 73, Indels: 33
0.79 0.15 0.07
Matches are distributed among these distances:
125 2 0.01
126 23 0.06
127 109 0.28
128 166 0.42
129 85 0.22
130 7 0.02
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (129 bp):
GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGCC
CTTGGATCGTGCAGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
Found at i:90051429 original size:298 final size:298
Alignment explanation
Indices: 90050955--90051499 Score: 803
Period size: 298 Copynumber: 1.8 Consensus size: 298
90050945 GGTGCCTAGG
* *
90050955 CCCTTGCTCTTGCAGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTC
1 CCCTTGCTCTTGCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTC
*** * *
90051020 GGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATCGGCAACTTGATT
66 GGGCACCATCAACAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATCGGCAACTAGACT
* * * *
90051085 CCTCGGATTTGCGGGATCCTCGAGCACCATCGGCGCCTAGGCCCTTGGTCGTGCAGGAGCCTCGG
131 CCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCGCCTAAGCCCTTGGTCATGCAGGAGCCTCGG
*
90051150 GCACCATCGGCACCTTGGTGCTTGGATATACGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTT
196 GCACCATCGGCACCTTGGTGCTTGGATATACAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTT
90051215 GGATGTCCGAGAGCCTCGGCCACTATCGGAAACCTAAT
261 GGATGTCCGAGAGCCTCGGCCACTATCGGAAACCTAAT
* * *
90051253 CCCTTGGTCTTGC-GAGAGGCTC-GAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCC
1 CCCTTGCTCTTGCAG-GAGCCTCGGA-CACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCC
* * *
90051316 TCGGGCACCATCAACAACCTAGGCCCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGGTAACCTA
64 TCGGGCACCATCAACAACCTAGGCCCCTAGTCGTGCGA-GAGCCTCGGGCACCATCGGCAA-CTA
* * * *
90051380 GGCTCCT-GG-TCGTGCGGGAGCCTCGGGCACCATCGGTGCCTAAGCCCTTGGTCATGCCGGAGC
127 GACTCCTCGGAT-GTGCGGGAGCCTCGAGCACCATCGGCGCCTAAGCCCTTGGTCATGCAGGAGC
*
90051443 CTCGGGCACCATCGGCACCTTGGTGCTTGGATGTACAGGAGCCTCGGGCACCATCGG
191 CTCGGGCACCATCGGCACCTTGGTGCTTGGATATACAGGAGCCTCGGGCACCATCGG
90051500 TGTGATAGTC
Statistics
Matches: 219, Mismatches: 23, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
297 5 0.02
298 207 0.95
299 7 0.03
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (298 bp):
CCCTTGCTCTTGCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTC
GGGCACCATCAACAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATCGGCAACTAGACT
CCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCGCCTAAGCCCTTGGTCATGCAGGAGCCTCGG
GCACCATCGGCACCTTGGTGCTTGGATATACAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTT
GGATGTCCGAGAGCCTCGGCCACTATCGGAAACCTAAT
Found at i:90053021 original size:28 final size:28
Alignment explanation
Indices: 90052989--90053056 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
90052979 AATGAGATTG
*
90052989 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
90053017 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
90053045 GCACTAAGTGTG
1 GCACTAAGTGTG
90053057 TGGACTTACT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:90054678 original size:43 final size:43
Alignment explanation
Indices: 90054630--90056636 Score: 2012
Period size: 43 Copynumber: 47.6 Consensus size: 43
90054620 ATTGGATGTC
* * *
90054630 CGGGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGTCTTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90054673 CGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCCTGGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * **
90054716 CGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * *
90054758 CGGGAGCCTCGGACACCAACAGCAACCTAGGCCCGTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90054801 TGGGAGCCACGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90054844 CGGGAACCTCGGGCACCATCGGC-GCCTAGGCCTTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90054886 CAGGAGCCTCGGACACCATCGGCAACCTAGGCTCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
90054929 CTGGAGCCTCGGGCACCATCAGTAACCTAGGCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
** * * *
90054972 CGGGAGCCTC-AACACCATCGGCAA-CTTGGTGCCTCGGATC-TG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTG
* *
90055014 CGGGAGCCTCGGGTACCATCGGC-GCCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
** * ** *
90055056 TAGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTC
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * **
90055098 CGGGAGCCTCGGCCACCATCGACAACCTAGGCTCTTGGTATTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90055141 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCCTAGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90055184 CGGAAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
*
90055227 CGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *
90055270 TGAGAGCCTTGAG-ACCATCGGCAACCTAGGCCCTTGGTTGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
*
90055312 TGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
*
90055354 CGGGAGCCAT-AGGCACCA-CGGC-ACCTAGGCCCTTGGTCGTG
1 CGGGAGCC-TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
*
90055395 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
90055438 CGGAAGCCTCGGGCACCGTCAGTAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * **
90055481 TGGGAGCCTCGGGCACCATCAGC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
* *
90055523 TGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90055566 CGTGAGCCTCGGGCACCATCGGCAACCTAGGCTCC-TGGTC-TT
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTG
* * *
90055608 CTGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCTTGTTCGTG
1 C-GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90055652 CGAGAGCCTCGGG-ACCATCGGTAACCTAGGCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90055694 CGGGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *
90055737 TGAGAGCCTTGAG-ACCATCGGCAACTTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90055779 CGGGAGCCTCGGGCACCATCGGCAATCTAGTCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90055822 CGGGAGCCACAGGCACCA-CGGC-ACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90055863 CGGGAGCCTTGAGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
90055906 CGGAAGCCTCGGGCACCGTCAGTAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * **
90055949 CGGGAGCCTCGGGCACCATCAGC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * *
90055991 TGGGAGCCTTGGGCACCATCAGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
90056034 CGTGAGCCTCTGGCACCATCGGCAACCTAGGCTCC-TGGTCTTC
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTG
* * *
90056077 CGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCTTGTTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90056120 CGAGAGCCTCGGG-ACCATC-GTAACCTAGG-CCTCTAGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTG
* * ***
90056161 CGGGAGCCTCGGGTACCATCGAC-ACCTTA-GTTTTTGGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGG-TCGTG
90056203 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90056246 CGGGAGCCTCGGGCACCATCGGCAATCTAGTCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90056289 CGGGAGCTTCGGGCACCATCGGCAACCTAGG----AGAG-CCT-
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTCGTG
* * * * * * * *
90056327 CGAGA-CCATC-GGCACC-TAGGC--CCTTGGTCGTGCGGGAGCCT-
1 CGGGAGCC-TCGGGCACCATCGGCAACCTAGGCCCT--TGG-TCGTG
*
90056368 CGGGCA-CCATC-GGCACC-TTGG-----T--G--CTTGGAT-GTG
1 CGGG-AGCC-TCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
* *
90056401 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCATGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
*
90056444 CGGGAGCCTCGGGCACCATCGGTAACCTAGG-CCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * * ** *
90056486 CGAGAGCCTCAGGCACCATCGAC-GCCTTGGTACTTGCAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTCGTG
* * * *
90056528 CGAGAGCCTTGGACACCATCGGTAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *
90056571 CGGGAGCCTC-GGCACTATCGGTAACCTAGGCCCCTAGTCGTA
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
*
90056613 CAGGAGCCTCGGGCACCATCGGCA
1 CGGGAGCCTCGGGCACCATCGGCA
90056637 CCTTGGTGCC
Statistics
Matches: 1627, Mismatches: 265, Indels: 144
0.80 0.13 0.07
Matches are distributed among these distances:
32 4 0.00
33 14 0.01
34 8 0.00
35 1 0.00
36 4 0.00
37 8 0.00
38 6 0.00
39 6 0.00
40 6 0.00
41 113 0.07
42 539 0.33
43 911 0.56
44 7 0.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (43 bp):
CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
Found at i:90054783 original size:85 final size:85
Alignment explanation
Indices: 90054630--90056636 Score: 1945
Period size: 85 Copynumber: 23.8 Consensus size: 85
90054620 ATTGGATGTC
* * * * *
90054630 CGGGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGTCTTGCGGGAGCCTCGAGCACCATTGG
1 CGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
90054695 CAACCTAGGCCCCTGGAT-GTG
65 CAACCTAGGCCCTTGG-TCGTG
* * ** * * *
90054716 CGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAACAG
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
*
90054780 CAACCTAGGCCCGTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * *
90054801 TGGGAGCCACGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* *
90054866 C-GCCTAGGCCTTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * * *
90054886 CAGGAGCCTCGGACACCATCGGCAACCTAGGCTCTTGGTCGTGCTGGAGCCTCGGGCACCATCAG
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* *
90054951 TAACCTAGGCCCCTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
** * * * * *
90054972 CGGGAGCCTC-AACACCATCGGCAACTTGGTGCCTCGGATC-TGCGGGAGCCTCGGGTACCATCG
1 CGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG
*
90055035 GC-GCCTAGGCCCTTGGTCGTG
64 GCAACCTAGGCCCTTGGTCGTG
** * ** * * *
90055056 TAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTCCGGGAGCCTCGGCCACCATCGA
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
* **
90055120 CAACCTAGGCTCTTGGTATTG
65 CAACCTAGGCCCTTGGTCGTG
* * * * *
90055141 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGGAAGCCTCGGGCACCATCGA
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
90055206 CAACCTAGGCCCTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * * *
90055227 CGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTTGAG-ACCATCGG
1 CGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
90055291 CAACCTAGGCCCTTGGTTGTG
65 CAACCTAGGCCCTTGGTCGTG
* *
90055312 TGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCAT-AGGCACCA-CGG
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGGGCACCATCGG
90055375 C-ACCTAGGCCCTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * *
90055395 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCGTCAG
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
90055460 TAACCTAGGCCCTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * ** * *
90055481 TGGGAGCCTCGGGCACCATCAGCACCTTGGTGCTTGGAT-GTGTGGGAGCCTTGGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
90055545 CAACCTAGGCCCTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * *
90055566 CGTGAGCCTCGGGCACCATCGGCAACCTAGGCTCC-TGGTC-TTCTGGGAGCCTCGAGCACCATT
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-CCTTGGTCGTGC-GGGAGCCTCGGGCACCATC
*
90055629 GGCAACCTAGGCCCTTGTTCGTG
63 GGCAACCTAGGCCCTTGGTCGTG
* * * *
90055652 CGAGAGCCTCGGG-ACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
90055716 TAACCTAGGCCCTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * * *
90055737 TGAGAGCCTTGAG-ACCATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* *
90055801 CAATCTAGTCCCTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * *
90055822 CGGGAGCCACAGGCACCA-CGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTTGAGCACCATCGGC
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
90055886 AACCTAGGCCCTTGGTCGTG
66 AACCTAGGCCCTTGGTCGTG
* * ** *
90055906 CGGAAGCCTCGGGCACCGTCAGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAG
1 CGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* **
90055971 C-ACCTTGGTGCTTGGAT-GTG
65 CAACCTAGGCCCTTGG-TCGTG
* * * * *
90055991 TGGGAGCCTTGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGTGAGCCTCTGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* *
90056056 CAACCTAGGCTCC-TGGTCTTC
65 CAACCTAGGC-CCTTGGTCGTG
* * * *
90056077 CGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCTTGTTCGTGCGAGAGCCTCGGG-ACCATC-G
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* *
90056140 TAACCTAGG-CCTCTAGTCGTG
65 CAACCTAGGCCCT-TGGTCGTG
* * ***
90056161 CGGGAGCCTCGGGTACCATCGACACCTTA-GTTTTTGGAT-GTGCGGGAGCCTCGGGCACCATCG
1 CGGGAGCCTCGGGCACCATCGGCACC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG
90056224 GCAACCTAGGCCCTTGGTCGTG
64 GCAACCTAGGCCCTTGGTCGTG
* * * *
90056246 CGGGAGCCTCGGGCACCATCGGCAATCTAGTCCCCTGGTCGTGCGGGAGCTTCGGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* *
90056311 CAACCTAGG----AGAG-CCT-
65 CAACCTAGGCCCTTG-GTCGTG
* * * * * * * *
90056327 CGAGA-CCATC-GGCACC-TAGGC-CCTTGG-TCGTGCG-GGAGCCTCGG-G---C----ACCAT
1 CGGGAGCC-TCGGGCACCATCGGCACCTAGGCCCTTG-GTCGTG-C-GGGAGCCTCGGGCACCAT
* **
90056378 CGGC-ACCTTGGTGCTTGGAT-GTG
62 CGGCAACCTAGGCCCTTGG-TCGTG
* *
90056401 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
90056466 TAACCTAGG-CCTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * * * ** * * * *
90056486 CGAGAGCCTCAGGCACCATCGACGCCTTGGTACTTGCAT-GTGCGAGAGCCTTGGACACCATCGG
1 CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGG
*
90056550 TAACCTAGGCCCTTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTG
* * * * * *
90056571 CGGGAGCCTC-GGCACTATCGGTAACCTAGGCCCCTAGTCGTACAGGAGCCTCGGGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
90056635 CA
65 CA
90056637 CCTTGGTGCC
Statistics
Matches: 1567, Mismatches: 275, Indels: 159
0.78 0.14 0.08
Matches are distributed among these distances:
69 6 0.00
70 9 0.01
72 1 0.00
73 2 0.00
74 7 0.00
75 7 0.00
76 9 0.01
77 8 0.01
78 10 0.01
79 9 0.01
80 8 0.01
81 7 0.00
82 5 0.00
83 63 0.04
84 285 0.18
85 702 0.45
86 427 0.27
87 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (85 bp):
CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
AACCTAGGCCCTTGGTCGTG
Found at i:90055575 original size:468 final size:472
Alignment explanation
Indices: 90054633--90056634 Score: 2320
Period size: 468 Copynumber: 4.3 Consensus size: 472
90054623 GGATGTCCGG
* *
90054633 GAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGTCTTGCGGGAGCCTCGAGCACCATTGGCAA
1 GAGCCTCGG-CACCATCGGCAACCTAGGCTCTTGGTCTTGCGGGAGCCTCGAGCACCATTGGCAA
* * * **
90054698 CCTAGGCCCCTGGAT-GTGCGAGAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCG
65 CCTAGGCCCCTGGTTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCG
* * * * * * * *
90054760 GGAGCCTCGGACACCAACAGCAACCTAGGCCCGTGGTCGTGTGGGAGCCACGGGCACCATCGGCA
129 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCATCGGCA
* * * *
90054825 ACCTAGGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGC-GCCTAGGCCTTTGGTCGTGCAG
194 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * * * *
90054889 GAGCC-TCGGACACCATCGGCAACCTAGGCTCTTGGTCGTGCTGGAGCCTCGGGCACCATCAGTA
259 GAGCCATAGG-CACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCA
* * ** * * * * *
90054953 ACCTAGGCCCCTGGTCGTGCGGGAGCCTC-AACACCATCGGCAA-CTTGGTGCCTCGGATC-TGC
322 ACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCAGTAACCTAGG-CCCTTGGATCGTGC
* * * *
90055015 GGGAGCCTCGGGTACCATCGGCGCCTAGGCCCTTGGTCGTGTAGGAGCCTCGGGCACCATCGGC-
386 GGGAGCCTCGGGCACCATCAGCACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCA
* ** * *
90055079 ACCTTGGTGCTTGGAT-GTCCGG
451 ACCTAGGCCCTTGG-TCGTGCGT
* * *
90055101 GAGCCTCGGCCACCATCGACAACCTAGGCTCTTGGTATTGCGGGAGCCTCGAGCACCATCGGCAA
1 GAGCCTCGG-CACCATCGGCAACCTAGGCTCTTGGTCTTGCGGGAGCCTCGAGCACCATTGGCAA
* **
90055166 CCTAGGCCCCTAG-TCGTGCG-GAAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCG
65 CCTAGGCCCCTGGTTCGTGCGAG-AGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
*
90055229 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTTGAG-ACCATCGGCA
129 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCATCGGCA
* *
90055293 ACCTAGGCCCTTGGTTGTGTGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGG
194 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
90055357 GAGCCATAGGCACCA-CGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAAC
259 GAGCCATAGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAAC
* *
90055421 CTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCGTCAGTAACCTAGGCCCTTGG-TCGTGTGGG
324 CTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGATCGTGCGGG
* ** *
90055485 AGCCTCGGGCACCATCAGCACCTTGGTGCTTGGAT-GTGTGGGAGCCTTGGGCACCATCGGCAAC
389 AGCCTCGGGCACCATCAGCACCTAGGCCCTTGG-TCGTGTGGGAGCCTCGGGCACCATCGGCAAC
90055549 CTAGGCCCTTGGTCGTGCGT
453 CTAGGCCCTTGGTCGTGCGT
*
90055569 GAGCCTCGGGCACCATCGGCAACCTAGGCTCCTGGTCTT-CTGGGAGCCTCGAGCACCATTGGCA
1 GAGCCTC-GGCACCATCGGCAACCTAGGCTCTTGGTCTTGC-GGGAGCCTCGAGCACCATTGGCA
* *
90055633 ACCTAGG-CCCTTGTTCGTGCGAGAGCCTCGGG-ACCATCGGTAACCTAGGCCCCTGGTCGTGCG
64 ACCTAGGCCCCTGGTTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
* *
90055696 GGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTTGAG-ACCATCGGCA
129 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCATCGGCA
* * *
90055760 ACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAATCTAGTCCCTTGGTCGTGCGG
194 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
90055825 GAGCCACAGGCACCA-CGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTTGAGCACCATCGGCAAC
259 GAGCCATAGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAAC
*
90055889 CTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCGTCAGTAACCTAGGCCCTTGG-TCGTGCGGG
324 CTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGATCGTGCGGG
* ** * *
90055953 AGCCTCGGGCACCATCAGCACCTTGGTGCTTGGAT-GTGTGGGAGCCTTGGGCACCATCAGCAAC
389 AGCCTCGGGCACCATCAGCACCTAGGCCCTTGG-TCGTGTGGGAGCCTCGGGCACCATCGGCAAC
90056017 CTAGGCCCTTGGTCGTGCGT
453 CTAGGCCCTTGGTCGTGCGT
* *
90056037 GAGCCTCTGGCACCATCGGCAACCTAGGCTCCTGGTCTTCCGGGAGCCTCGAGCACCATTGGCAA
1 GAGCCTC-GGCACCATCGGCAACCTAGGCTCTTGGTCTTGCGGGAGCCTCGAGCACCATTGGCAA
* *
90056102 CCTAGG-CCCTTGTTCGTGCGAGAGCCTCGGG-ACCATC-GTAACCTAGG-CCTCTAGTCGTGCG
65 CCTAGGCCCCTGGTTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCT-TGGTCGTGCG
* *** * * *
90056163 GGAGCCTCGGGTACCATC-G-ACACCTTA-GTTTTTGGAT-GTGCGGGAGCCTCGGGCACCATCG
129 GGAGCCTCGGGCACCATCGGTA-ACC-TAGGCCCTTGG-TCGTGTGAGAGCCTCGAGCACCATCG
* * *
90056224 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAATCTAGTCCCCTGGTCGTG
191 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
90056289 CGGGAG-CTTCGGGCACCATCGGCA---A---CC----T--AG-GAGAGCCTCGAG-ACCATCGG
256 CGGGAGCCAT-AGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG
* ** * **
90056339 C-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTTGGTGCTTGGAT-GTG
320 CAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGATCGTG
* * * *
90056401 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCATGGTCGTGCGGGAGCCTCGGGCACCATCGG
385 CGGGAGCCTCGGGCACCATCAGC-ACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGG
* *
90056466 TAACCTAGG-CCTTGGTCGTGCGA
449 CAACCTAGGCCCTTGGTCGTGCGT
* * * * * *
90056489 GAGCCTCAGGCACCATCGAC-GCCTTGG-TACTT-G-CATGTGCGAGAGCCTTG-GACACCATCG
1 GAGCCTC-GGCACCATCGGCAACCTAGGCT-CTTGGTC-T-TGCGGGAGCCTCGAG-CACCATTG
* * * * * *
90056549 GTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GGCACTATCGGTAACCTAGGCCCCTAGTCGT
61 GCAACCTAGGCCCCTGGTTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGT
* *
90056612 ACAGGAGCCTCGGGCACCATCGG
126 GCGGGAGCCTCGGGCACCATCGG
90056635 CACCTTGGTG
Statistics
Matches: 1368, Mismatches: 130, Indels: 87
0.86 0.08 0.05
Matches are distributed among these distances:
449 1 0.00
450 6 0.00
451 52 0.04
452 107 0.08
453 81 0.06
454 9 0.01
455 10 0.01
456 1 0.00
458 1 0.00
462 2 0.00
465 2 0.00
466 91 0.07
467 334 0.24
468 603 0.44
469 68 0.05
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (472 bp):
GAGCCTCGGCACCATCGGCAACCTAGGCTCTTGGTCTTGCGGGAGCCTCGAGCACCATTGGCAAC
CTAGGCCCCTGGTTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGG
AGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCATCGGCAAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
GCCATAGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACCT
AGGCCCTTGGTCGTGCGGAAGCCTCGGGCACCATCAGTAACCTAGGCCCTTGGATCGTGCGGGAG
CCTCGGGCACCATCAGCACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTA
GGCCCTTGGTCGTGCGT
Found at i:90056354 original size:113 final size:114
Alignment explanation
Indices: 90056206--90056558 Score: 338
Period size: 127 Copynumber: 3.0 Consensus size: 114
90056196 GGATGTGCGG
*
90056206 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-
1 GAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * *
90056270 ATCTAGTCCCCTGG-TCGTGCGGGAGCTTCGGGCACCATCGGCAACCTAGGA
66 CT-TAGT-CCCTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGA
90056321 GAGCCTCGAG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * *
90056384 CTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCA
66 CTTAGTCCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG---A
* * * *
90056436 TGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-CCTTGGTCGTGCGAGAGCCTCAGGC
1 -----------GAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * * * * * * *
90056500 ACCATCGACGCCTTGGTACTTGCATGTGCGAGAGCCTTGGACACCATCGGTAACCTAGG
55 ACCATCGGCACCTTAGTCCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
90056559 CCCTTGGTCG
Statistics
Matches: 202, Mismatches: 18, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
112 36 0.18
113 47 0.23
114 10 0.05
115 10 0.05
126 9 0.04
127 83 0.41
128 7 0.03
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (114 bp):
GAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
CTTAGTCCCTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGA
Found at i:90056364 original size:70 final size:72
Alignment explanation
Indices: 90056249--90056382 Score: 209
Period size: 70 Copynumber: 1.9 Consensus size: 72
90056239 GGTCGTGCGG
* * * *
90056249 GAGCCTCGGGCACCATCGGCAATCTAGTCCCCTGGTCGTGCGGGAGCTTCGGGCACCATCGGCAA
1 GAGCCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
90056314 CCTAGGA
66 CCTAGGA
*
90056321 GAGCCTCGAG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GAGCCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
90056383 CCTTGGTGCT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 39 0.68
71 9 0.16
72 9 0.16
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (72 bp):
GAGCCTCGAGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
CCTAGGA
Found at i:90070045 original size:58 final size:59
Alignment explanation
Indices: 90069947--90070067 Score: 156
Period size: 58 Copynumber: 2.1 Consensus size: 59
90069937 CCCTCCCCAA
*** * *
90069947 TCCCAAAAGGTAGAATTCGGGTACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAAATACCGTTACATGCTCGGTACCCAACAATGAATGAATCG
* *
90070006 TCCC-AAAGGTAGAATTCAAATACCGTTGCATGC-CTGGTACCCAACAATGGATGAATCG
1 TCCCAAAAGGTAGAATTCAAATACCGTTACATGCTC-GGTACCCAACAATGAATGAATCG
90070064 TCCC
1 TCCC
90070068 TGTCCCTCCC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 1 0.02
58 49 0.91
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAAATACCGTTACATGCTCGGTACCCAACAATGAATGAATCG
Found at i:90070823 original size:43 final size:43
Alignment explanation
Indices: 90070777--90071775 Score: 1199
Period size: 43 Copynumber: 23.5 Consensus size: 43
90070767 TGCCTCGGAT
* * * * * * *
90070777 GTGCGGGAGCCTCAGACCCCATCGGTAAACTAGGCCATTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** *
90070820 GTGCCAGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90070863 GTG-GAGGAGCCTCGGGCACCATCTGCAACCTAGGCCCCTGGTC
1 GTGCG-GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90070906 GTGCGGGAGCCTCAGGCACCATCGGGAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
90070949 GTGCGGGAGCCTCGGGCACCATCGG-GACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90070991 GTGTGGGAGCCTCGGGCACCA-CGGC-ATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90071032 GCGCGGGAGACTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90071075 GTGCGGGATCCTCGGACACTATCGG-GACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** *
90071117 GTGCGGGAGCCTCTAGCACCATCGGCAACCTATGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90071160 GTGCAGGAGACTCGAGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90071203 GTGGGGGAGCCTCGGGCACCATCGTCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90071246 GTGCGAGAACCTCGGGCACCA-CAGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** *
90071287 ATGCGGGAGCCTCTAGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90071330 GTGCGGGAGACTCGGGCACCATCGGCAACCTAGGCCCTTTGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
90071373 GTG-GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
90071415 GTGCGGGAGACTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90071458 GTGCGAGAGCCTCGAGCACCATTGGC-GCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90071500 GCGC-GGAGCCTCGGGCACCATCGGC-ACTTAGTG--CTTAGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTT-GGTC
*
90071541 -TGCGGGAGCCTCGGGCACCATCGACAACCTAGGTCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
* * *
90071583 TTGTGGGAGCCTCGGGCACCATTGGCAACCTAGG-CCTCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTC
* *
90071626 GTGCGAGAGCCTCGGG-ACCATCGGCAACATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
90071668 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTTCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
90071710 GTGCGAGAGCCTCAGGCACCATCGGTAACTTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90071753 GTGTGGAAGCCTCGGGTACCATC
1 GTGCGGGAGCCTCGGGCACCATC
90071776 AGTAACCTTG
Statistics
Matches: 817, Mismatches: 115, Indels: 48
0.83 0.12 0.05
Matches are distributed among these distances:
40 5 0.01
41 114 0.14
42 216 0.26
43 480 0.59
44 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Done.