Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 275 of 356
Found at i:90071070 original size:212 final size:214
Alignment explanation
Indices: 90070777--90071775 Score: 1163
Period size: 212 Copynumber: 4.7 Consensus size: 214
90070767 TGCCTCGGAT
* * * * * * * * *
90070777 GTGCGGGAGCCTCAGACCCCATCGGTAAACTAGGCCATTGGTTGTGCCAGAGCCTC-GAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGACTCGGA-CACCA
* *
90070841 TCGGCAACCTAGGCCCTTGGTCGTG-GAGGAGCCTCGGGCACCATCTGCAACCTAGGCCCCTGGT
65 TCGGC-ACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
* *
90070905 CGTGCGGGAGCCTCAGGCACCATCGGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
128 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
90070970 TCGG-GACCTAGGCCCTTGGTC
193 TCGGCAACCTAGGCCCTTGGTC
* * * *
90070991 GTGTGGGAGCCTCGGGCACCA-CGGC-ATCTAGGCCCTTGGTCGCGCGGGAGACTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGACTCGGACACCAT
* * * *
90071054 CGGCAACCTAGGCCCTTGGTCGTGCGGGATCCTCGGACACTATCGG-GACCTAGGCCCTTGGTCG
66 CGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
** * * * *
90071118 TGCGGGAGCCTCTAGCACCATCGGCAACCTATGCCCTTGGTCGTGCAGGAGACTCGAGCACCATC
130 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
90071183 GACAACCTAGGCCCTTGGTC
195 GGCAACCTAGGCCCTTGGTC
* * * *
90071203 GTGGGGGAGCCTCGGGCACCATCGTCAACCTAGGCCCCTGGTCGTGCGAGA-ACCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGA-CTCGGACACCA
* * ** *
90071267 -CAGCACCTAGGCCCTTGGTCATGCGGGAGCCTCTAGCACCATCGGTAACCTAGGCCCTTGGTCG
65 TCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* *
90071331 TGCGGGAGACTCGGGCACCATCGGCAACCTAGGCCCTTTGTCGTG-GGGAGCCTCGGGCACCATC
130 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
90071395 GGCAACCTAGGCCCTTGGTC
195 GGCAACCTAGGCCCTTGGTC
* *
90071415 GTGCGGGAGACTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGACTCGGA-CACCA
* * * * *
90071479 TTGGCGCCTAGGCCCTTGGTCGCGC-GGAGCCTCGGGCACCATCGGC-ACTTAGTG--CTTAGAT
65 TCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTT-GGT
* * *
90071540 C-TGCGGGAGCCTCGGGCACCATCGACAACCTAGGTCCC-TGGTCTTGTGGGAGCCTCGGGCACC
128 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
90071603 ATTGGCAACCTAGG-CCTCTGGTC
192 ATCGGCAACCTAGGCCCT-TGGTC
* * * * *
90071626 GTGCGAGAGCCTCGGG-ACCATCGGCAACATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGACTCGGACACCAT
* ** * * * * *
90071690 CGGCACCTTGGTTCTTGGAT-GTGCGAGAGCCTCAGGCACCATCGGTAACTTAGGCCCCTGGTCG
66 CGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * *
90071754 TGTGGAAGCCTCGGGTACCATC
130 TGCGGGAGCCTCGGGCACCATC
90071776 AGTAACCTTG
Statistics
Matches: 672, Mismatches: 91, Indels: 45
0.83 0.11 0.06
Matches are distributed among these distances:
210 102 0.15
211 156 0.23
212 257 0.38
213 110 0.16
214 47 0.07
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (214 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGACTCGGACACCAT
CGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
GCAACCTAGGCCCTTGGTC
Found at i:90071137 original size:85 final size:85
Alignment explanation
Indices: 90070777--90071775 Score: 1153
Period size: 85 Copynumber: 11.8 Consensus size: 85
90070767 TGCCTCGGAT
* * * * * * * ** *
90070777 GTGCGGGAGCCTCAGACCCCATCGGTAAACTAGGCCATTGGTTGTGCCAGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
90070842 CGGCAACCTAGGCCCTTGGTC
66 CGG-AACCTAGGCCCTTGGTC
* * *
90070863 GTG-GAGGAGCCTCGGGCACCATCTGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACCA
1 GTGCG-GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
90070927 TCGGGAACCTAGGCCCTTGGTC
65 TC-GGAACCTAGGCCCTTGGTC
* *
90070949 GTGCGGGAGCCTCGGGCACCATCGG-GACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCA-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
90071012 CGGCATCTAGGCCCTTGGTC
66 CGGAACCTAGGCCCTTGGTC
* * * * * *
90071032 GCGCGGGAGACTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGATCCTCGGACACTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
90071097 CGGGACCTAGGCCCTTGGTC
66 CGGAACCTAGGCCCTTGGTC
** * * * *
90071117 GTGCGGGAGCCTCTAGCACCATCGGCAACCTATGCCCTTGGTCGTGCAGGAGACTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
90071182 CGACAACCTAGGCCCTTGGTC
66 CG-GAACCTAGGCCCTTGGTC
* * * * *
90071203 GTGGGGGAGCCTCGGGCACCATCGTCAACCTAGGCCCCTGGTCGTGCGAGAACCTCGGGCACCA-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
90071267 CAGCACCTAGGCCCTTGGTC
66 CGGAACCTAGGCCCTTGGTC
* ** * *
90071287 ATGCGGGAGCCTCTAGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGACTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
90071352 CGGCAACCTAGGCCCTTTGTC
66 CGG-AACCTAGGCCCTTGGTC
*
90071373 GTG-GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGACTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
90071437 CGGCAACCTAGGCCCTTGGTC
66 CGG-AACCTAGGCCCTTGGTC
* * * * *
90071458 GTGCGAGAGCCTCGAGCACCATTGGC-GCCTAGGCCCTTGGTCGCGC-GGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
90071521 CGGCACTTAGTG--CTTAGATC
66 CGGAACCTAG-GCCCTT-GGTC
* * *
90071541 -TGCGGGAGCCTCGGGCACCATCGACAACCTAGGTCCC-TGGTCTTGTGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
90071604 TTGGCAACCTAGG-CCTCTGGTC
65 TCGG-AACCTAGGCCCT-TGGTC
* *
90071626 GTGCGAGAGCCTCGGG-ACCATCGGCAACATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * **
90071690 CGGCACCTTGGTTCTTGGAT-
66 CGGAACCTAGGCCCTTGG-TC
* * * * * * * *
90071710 GTGCGAGAGCCTCAGGCACCATCGGTAACTTAGGCCCCTGGTCGTGTGGAAGCCTCGGGTACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
90071775 C
66 C
90071776 AGTAACCTTG
Statistics
Matches: 778, Mismatches: 113, Indels: 45
0.83 0.12 0.05
Matches are distributed among these distances:
82 24 0.03
83 59 0.08
84 174 0.22
85 308 0.40
86 210 0.27
87 3 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGAACCTAGGCCCTTGGTC
Found at i:90072125 original size:35 final size:35
Alignment explanation
Indices: 90072086--90072157 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
90072076 CATCTCCAGA
*
90072086 GCTTGGCAAATATAGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATAGAAAGGAATCTTCAAAGATAT
* * *
90072121 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATAGAAAGGAATCTTCAAAGATAT
90072156 GC
1 GC
90072158 GATCCTAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATAGAAAGGAATCTTCAAAGATAT
Found at i:90076137 original size:35 final size:35
Alignment explanation
Indices: 90076098--90076169 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
90076088 CATCTCTAGA
* *
90076098 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
90076133 GCTTGGAAAATATGGAAGGGGATCTTTAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
90076168 GC
1 GC
90076170 GATCCTAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.28
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:90079244 original size:5 final size:5
Alignment explanation
Indices: 90079236--90079269 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
90079226 TACCGTACCG
90079236 TGCCA TGCCA TGCCA TGCCA TGCCA T--CA TGCCA T
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA T
90079270 ACTTCATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.11
5 24 0.89
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.24
Consensus pattern (5 bp):
TGCCA
Found at i:90091272 original size:42 final size:43
Alignment explanation
Indices: 90091219--90091311 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 43
90091209 GGTGGTGTGA
* * *
90091219 GAGCCTCGAGCAGCATCGGCGCCTTGGTG-CTCGGATGTGCAT
1 GAGCCTCGAGCAGCATAGACACCTTGGTGCCTCGGATGTGCAT
* **
90091261 GAGCCTTGAGCAGCATAGACACCTTGGTGCCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATAGACACCTTGGTGCCTCGGATGTGCAT
90091304 GAGCCTCG
1 GAGCCTCG
90091312 GACACCATCG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
GAGCCTCGAGCAGCATAGACACCTTGGTGCCTCGGATGTGCAT
Found at i:90091344 original size:43 final size:43
Alignment explanation
Indices: 90091298--90093605 Score: 2281
Period size: 43 Copynumber: 54.6 Consensus size: 43
90091288 TGCCTCGGAT
* * * * *
90091298 GTGCGGGAGCCTCGGACACCATCGGAAAACTAGGCCATTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90091341 GTGCCGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
90091384 GTGGGGGAACCTCGGGCACCATCGACAGCCTAGACCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90091427 GTGCGGGAGCCTCAGGCACCATCAGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90091470 GTGCGAGAGCCTCGGG-ACCATCGACAACATAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** *
90091512 TTGCGAAAGCCTC-GG-AGCCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * * *
90091554 ATACGGGAGCCTCGGGCACCATCGG-GACCTAGACCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
90091596 TTGCGGGAACTTCGAGTACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
90091639 GTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
90091682 GTGCGGGAGCCACGGGCAACATCGG-GGCCTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90091724 ATGTGGGAGACTCGGGCACCATCGGC-ACCTTAGTG--CTTGGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TC
* * *
90091767 -TGCGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90091809 TTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90091852 GTGCGAGAGCCTCGGG-ACCATCGTCAACCTAGCCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
90091894 GTGCAGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * *
90091936 GTGCGGGAGCCTCGGGCACCATTGGCTACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90091979 GTGCGGGAGCCTCGGGCACCATTGGTAACCTAGTCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90092022 GTGCGGGAGCCTCAGGCACCATCGGCAATCTAGGCGCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
90092065 GTGCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
90092106 GTGCGGGAGCTTCGGGCCCCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * **
90092148 GTCCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCAAGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
90092191 GTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
90092234 GTGCGGGAGCCTCGGGAATCATCGG-GGCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90092276 GTGCGAGAGCCTCGAGCACCATCGGCAACCTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90092319 ATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTCGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
90092362 GTACGGGAGCCTCGAGCATCATCAGC-GCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
90092404 GTGCTGGAGCCTCGGGCACCATCGAC-ACCTTA-GTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGG-TC
* * * * * *
90092446 TTGCGGGAGCCTCGGGCACTATCAGCAATCTAGGCCCCTGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90092489 TTGCGGGAGCCTCGGGCACCATTGGCAACCTATGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90092532 GTACGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
90092574 GTACGGGAGCCTCGGGCACCACCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
90092616 GTGTGGGAGCCTCGGGCACCATCGGTAACCTAGCCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90092659 GTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCGCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90092702 GTGCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
90092743 GTGTGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * * **
90092785 GTGCGGGAGCCTTAGGCACCATCGG-TACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
90092827 GTGCGAGAGCCTCAGACACCATCGGCAACCTAGGCCCATGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90092870 GTGCGAGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90092913 GTGTGGGAGCCTCGGGCACCATCGG-GACCTAGGCCCTTGGTG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90092955 GTACGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
90092998 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
90093041 GTGCGGGAACCTCGAGCACCATCAGC-GCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
**
90093083 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTA-GTACTTGGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGG-TC
* *
90093126 -TGCGGGAGCCTCGGGCACCACCGACAACCTAGG-CC-----C
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90093162 AT----G-GCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
***** * * *
90093200 GTATAAAAGCCTCGAG-ACTATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** ** *
90093242 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTTTGTGCTTGAAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTC
* * * * *
90093284 GTGCGGGAGCCTTGGGCAGCATCGGTAACCTAGGCCCCTGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
90093327 GTGCGGGAGCCTTGGGCACCATCGGTAACCTAGTCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
90093370 GTGCGGGAGCCTCGGGCACCATAGGCAACCTAGACGCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
90093413 GTGCGAGAGCCACGGG-ACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
90093454 GTGCGGGAGCTTCAGGCACCACCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * * *
90093496 GTGGGGGAGCCTCAGGCACCATCAGCAACCCACGCCTTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * * *
90093539 ATGCGGGAGCCTCGGATACCATCGGTAACCTAGGCCCCTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
90093582 GTGCGAGAGCCTCGGGCACCATCG
1 GTGCGGGAGCCTCGGGCACCATCG
90093606 ACACCTTGGT
Statistics
Matches: 1857, Mismatches: 348, Indels: 120
0.80 0.15 0.05
Matches are distributed among these distances:
32 23 0.01
33 3 0.00
36 1 0.00
37 1 0.00
38 2 0.00
41 86 0.05
42 765 0.41
43 974 0.52
44 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:90091637 original size:85 final size:85
Alignment explanation
Indices: 90091298--90093605 Score: 2100
Period size: 85 Copynumber: 27.3 Consensus size: 85
90091288 TGCCTCGGAT
* * * * *
90091298 GTGCGGGAGCCTCGGACACCATCGGAAAACTAGGCCATTGGTTGTGCCGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
90091363 CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
90091384 GTGGGGGAACCTCGGGCACCATC-GACAGCCTAGACCCCTGGTCGTGCGGGAGCCTC-AGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGA-A-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACC
*
90091447 ATCAGCAACCTAGGCCCTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * * **
90091470 GTGCGAGAGCCTCGGG-ACCATCGACAACATAGGCCTTTGGTCTTGCGAAAGCCTCG-G-AGCCA
1 GTGCGGGAGCCTCGGGCACCATCG-GAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA-CCA
*
90091532 TCGGTAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * * * * * *
90091554 ATACGGGAGCCTCGGGCACCATCGGGACCTAGACCCTTGGTCTTGCGGGAACTTCGAGTACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
90091619 GGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * *
90091639 GTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCACGGGCAACAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
** *
90091704 CGG-GGCCTAGGCCTTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
90091724 ATGTGGGAGACTCGGGCACCATCGGCACCTTAGTG--CTTGGATC-TGCGGGAGCCTCGAGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGAGCACC
* *
90091786 ATCGGTAACCTAGGCCCCTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * *
90091809 TTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCG-GGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * *
90091873 CGTCAACCTAGCCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * ** * *
90091894 GTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTAGAT-GTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGAGCACCAT
* * * *
90091958 TGGCTACCTAGGCCCCTAGTC
65 CGGCAACCTAGGCCCTTGGTC
* * *
90091979 GTGCGGGAGCCTCGGGCACCATTGGTAACCTAGTCCCCTGGTCGTGCGGGAGCCTC-AGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCA
* *
90092043 TCGGCAATCTAGGCGCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * * *
90092065 GTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCTTCGGGCCCCATC
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
* **
90092129 GGC-ACCTTGGTGCTTGGAT-
66 GGCAACCTAGGCCCTTGG-TC
* * * ** * *
90092148 GTCCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCAAGGTCGTGCGGGAGCCTCGGGTACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
90092213 CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * ** *
90092234 GTGCGGGAGCCTCGGGAATCATCGGGGCCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
*
90092299 GGCAACCTAGGCCATTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * *
90092319 ATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTCGTCGTACGGGAGCCTCGAGCATCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* *
90092384 CAGC-GCCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* ** * * *
90092404 GTGCTGGAGCCTCGGGCACCATC-GACACCTTA-GTACTTGGAT-TTGCGGGAGCCTCGGGCACT
1 GTGCGGGAGCCTCGGGCACCATCGGA-ACC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACC
* * * *
90092466 ATCAGCAATCTAGGCCCCTGGCC
63 ATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
90092489 TTGCGGGAGCCTCGGGCACCATTGGCAACCTATGCCCCTGGTCGTACGAGAGCCTCG-GGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* *
90092553 CGGCAACCTAGGCCCCTAGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * ** * *
90092574 GTACGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCAT
* * * *
90092638 CGGTAACCTAGCCCCCTAGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
90092659 GTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCGCTTGGTCGTGCGAGAGCCTCG-GGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
*
90092723 CGGC-ACCTAGGCCCTTGGTT
65 CGGCAACCTAGGCCCTTGGTC
* * *
90092743 GTGTGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCT-TAGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCAT
* * **
90092807 CGG-TACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* * * * * * *
90092827 GTGCGAGAGCCTCAGACACCATCGGCAACCTAGGCCCATGGTCGTGCGAGAGCCTCGGGTACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
90092892 CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * *
90092913 GTGTGGGAGCCTCGGGCACCATCGGGACCTAGGCCCTTGGTGGTACGGGAGCCTCGAGCACCATT
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
90092978 GGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* *
90092998 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCG-GAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* *
90093063 CAGC-GCCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* ** *
90093083 GTGCGGGAGCCTCGGGCACCATCGGCACCTTA-GTACTTGGATC-TGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGAACC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCA
* *
90093146 CCGACAACCTAGG-CC-----C
64 TCGGCAACCTAGGCCCTTGGTC
* * * ***** *
90093162 AT----G-GCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTATAAAAGCCTCGAG-ACTAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
*
90093221 CGGCAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * ** ** * * * *
90093242 GTGCGAGAGCCTCGGGCACCATCGGCACCTTTGTGCTTGAAT-GTGCGGGAGCCTTGGGCAGCAT
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGAGCACCAT
* * *
90093306 CGGTAACCTAGGCCCCTGGCC
65 CGGCAACCTAGGCCCTTGGTC
* * * * *
90093327 GTGCGGGAGCCTTGGGCACCATCGGTAACCTAGTCCCCTAGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * *
90093392 AGGCAACCTAGACGCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * *
90093413 GTGCGAGAGCCACGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCTTC-AGGCACCAC
1 GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCAT
* **
90093476 CGGC-ACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* * * * * * * * *
90093496 GTGGGGGAGCCTCAGGCACCATCAGCAACCCACGCCTTTAGTCATGCGGGAGCCTCG-GATACCA
1 GTGCGGGAGCCTCGGGCACCATC-GGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCA
* * *
90093560 TCGGTAACCTAGGCCCCTGGTT
64 TCGGCAACCTAGGCCCTTGGTC
*
90093582 GTGCGAGAGCCTCGGGCACCATCG
1 GTGCGGGAGCCTCGGGCACCATCG
90093606 ACACCTTGGT
Statistics
Matches: 1782, Mismatches: 359, Indels: 163
0.77 0.16 0.07
Matches are distributed among these distances:
74 34 0.02
75 20 0.01
79 2 0.00
80 2 0.00
83 74 0.04
84 374 0.21
85 816 0.46
86 458 0.26
87 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:90093170 original size:32 final size:32
Alignment explanation
Indices: 90093133--90093193 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
90093123 ATCTGCGGGA
90093133 GCCTCGGGCACCACCGACAACCTAGGCCCATG
1 GCCTCGGGCACCACCGACAACCTAGGCCCATG
** *
90093165 GCCTCGGGCACCATTGGCAACCTAGGCCC
1 GCCTCGGGCACCACCGACAACCTAGGCCC
90093194 CTGGTCGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.20, C:0.43, G:0.26, T:0.11
Consensus pattern (32 bp):
GCCTCGGGCACCACCGACAACCTAGGCCCATG
Found at i:90093295 original size:159 final size:159
Alignment explanation
Indices: 90093006--90093326 Score: 412
Period size: 159 Copynumber: 2.0 Consensus size: 159
90092996 TCGTGCGGGA
* * ** *
90093006 GCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCATCAGCGCCT
1 GCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGAGAAAACCTCGAGCACCATCAGCACCT
* * *
90093071 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTACTTGGATCTGCGGGAGCC
66 AGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTACTTGAATCTGCGGGAGCC
90093136 TCGGGCACCACCGACAACCTAGGCCCATG
131 TCGGGCACCACCGACAACCTAGGCCCATG
* * * * *
90093165 GCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGT-ATAAAAGCCTCGAG-ACTATCGGCAAC
1 GCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGAGAAAA-CCTCGAGCACCATCAGC-AC
* * *
90093228 CTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTTGTGCTTGAATGTGCGGGAG
64 CTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTACTTGAATCTGCGGGAG
* * * ** *
90093293 CCTTGGGCAGCATCGGTAACCTAGGCCCCTG
129 CCTCGGGCACCACCGACAACCTAGGCCCATG
90093324 GCC
1 GCC
90093327 GTGCGGGAGC
Statistics
Matches: 138, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
158 9 0.07
159 129 0.93
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (159 bp):
GCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGAGAAAACCTCGAGCACCATCAGCACCT
AGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTACTTGAATCTGCGGGAGCC
TCGGGCACCACCGACAACCTAGGCCCATG
Found at i:90093517 original size:84 final size:85
Alignment explanation
Indices: 90093326--90093605 Score: 201
Period size: 84 Copynumber: 3.3 Consensus size: 85
90093316 GGCCCCTGGC
* * *
90093326 CGTGCGGGAGCCTTGGGCACCATCGGTAACCTAGTCCCCTAGTCGTGCGGGAGCCTCGGGCACCA
1 CGTGCGGGAGCC-TCGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCA
*
90093391 TAGGCAACCTAGACGCTTGGT
65 CAGGCAACCTAGACGCTTGGT
* * * * * * *
90093412 CGTGCGAGAGCCACGGGACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCTTCAGGCACCAC
1 CGTGCGGGAGCCTCGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCAC
* * **
90093476 CGGC-ACCTTGGTGCTTGGAT
66 AGGCAACCTAGACGCTTGG-T
* * * * * ** * *
90093496 -GTGGGGGAGCCTCAGGCACCATCAGCAACCCACGCCTTTAGTCATGCGGGAGCCTC-GGATACC
1 CGTGCGGGAGCCTC-GGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGG-CACC
* * * *
90093559 ATC-GGTAACCTAGGCCCCTGGT
64 A-CAGGCAACCTAGACGCTTGGT
* *
90093581 TGTGCGAGAGCCTCGGGCACCATCG
1 CGTGCGGGAGCCTC-GGCACCATCG
90093606 ACACCTTGGT
Statistics
Matches: 150, Mismatches: 37, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
83 21 0.14
84 47 0.31
85 40 0.27
86 42 0.28
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (85 bp):
CGTGCGGGAGCCTCGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCAC
AGGCAACCTAGACGCTTGGT
Found at i:90098479 original size:46 final size:46
Alignment explanation
Indices: 90098307--90098476 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
90098297 TGTAACCCGC
* * ** * *
90098307 CCATAAGTGAAATCAGACTCAACTCAATAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
90098353 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA-
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* * *
90098402 CC-T--CTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
90098446 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
90098477 TTCAGATGCC
Statistics
Matches: 101, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 1 0.01
46 55 0.54
47 28 0.28
48 1 0.01
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:90098501 original size:46 final size:46
Alignment explanation
Indices: 90098349--90098501 Score: 116
Period size: 46 Copynumber: 3.3 Consensus size: 46
90098339 TCGGGCGTTC
* * * *
90098349 ACATCCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT
1 ACATCC-T-AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCA--T
* * * *
90098399 ACA-CCT-CTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 ACATCCTAGT-GAACTCGGACTCAACTCAACGAGTTC--AGATGCCCAT
* * *
90098446 CCAT--AAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAA
1 ACATCCTAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAT
90098490 ACATCCTAGTGA
1 ACATCCTAGTGA
90098502 CATGCCACTT
Statistics
Matches: 79, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
44 9 0.11
46 32 0.41
47 28 0.35
48 1 0.01
49 6 0.08
50 3 0.04
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
ACATCCTAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAT
Found at i:90103788 original size:15 final size:15
Alignment explanation
Indices: 90103770--90103808 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
90103760 ATTATTTTAA
*
90103770 TTAATTATATT-ATAT
1 TTAATTA-ATTAATAG
90103785 TTAATTAATTAATAG
1 TTAATTAATTAATAG
90103800 TTAATTAAT
1 TTAATTAAT
90103809 ATCATTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TTAATTAATTAATAG
Found at i:90103808 original size:19 final size:19
Alignment explanation
Indices: 90103759--90103795 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
90103749 TTGCGTATTT
90103759 TATTAT-TTTAATTAATTA
1 TATTATATTTAATTAATTA
90103777 TATTATATTTAATTAATTA
1 TATTATATTTAATTAATTA
90103796 ATAGTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTATATTTAATTAATTA
Found at i:90103991 original size:23 final size:25
Alignment explanation
Indices: 90103943--90104000 Score: 77
Period size: 23 Copynumber: 2.4 Consensus size: 25
90103933 AATTTAAAAA
90103943 TTAAA-TATAAAGATATAAAGTAAAT
1 TTAAACTA-AAAGATATAAAGTAAAT
*
90103968 TTAAACTAAAAGATA-AAA-TGAAT
1 TTAAACTAAAAGATATAAAGTAAAT
90103991 TTAAACTAAA
1 TTAAACTAAA
90104001 CTGATACAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 14 0.45
24 3 0.10
25 12 0.39
26 2 0.06
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.29
Consensus pattern (25 bp):
TTAAACTAAAAGATATAAAGTAAAT
Found at i:90105228 original size:58 final size:59
Alignment explanation
Indices: 90105137--90105257 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
90105127 ACCTCCCCAA
* * * * *
90105137 TCCCAAAAGGTAGAATTCGGGTACCGTTGCATGTTCGGTACCCAATAATTAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTGCATGTCCAGTACCCAACAATGAATGAATCG
*
90105196 TCCC-AAAGGTAGAATTCGGATACCGTTGCATGTCCAGTACCCAACAATGGATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTGCATGTCCAGTACCCAACAATGAATGAATCG
90105254 TCCC
1 TCCC
90105258 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTGCATGTCCAGTACCCAACAATGAATGAATCG
Found at i:90105664 original size:24 final size:24
Alignment explanation
Indices: 90105625--90105689 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
90105615 GCCGGTTAGG
* * *
90105625 TTCCCGGCGGTTCTCCGGTGATCT
1 TTCCCGGCGGTGCTCCGGCGAGCT
*
90105649 ATT-CCGGAGGTGCTCCGGCGAGCT
1 -TTCCCGGCGGTGCTCCGGCGAGCT
90105673 TTCCCGGCGGTGCTCCG
1 TTCCCGGCGGTGCTCCG
90105690 ATGAGTCATC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 2 0.06
24 30 0.88
25 2 0.06
ACGTcount: A:0.06, C:0.34, G:0.34, T:0.26
Consensus pattern (24 bp):
TTCCCGGCGGTGCTCCGGCGAGCT
Found at i:90105701 original size:24 final size:25
Alignment explanation
Indices: 90105626--90105701 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 25
90105616 CCGGTTAGGT
*
90105626 TCCCGGCGGTTCTCCGGTGA-TCTA
1 TCCCGGCGGTGCTCCGGTGAGTCTA
* * * *
90105650 TTCCGGAGGTGCTCCGGCGAG-CTT
1 TCCCGGCGGTGCTCCGGTGAGTCTA
*
90105674 TCCCGGCGGTGCTCCGATGAGTC-A
1 TCCCGGCGGTGCTCCGGTGAGTCTA
90105698 TCCC
1 TCCC
90105702 AGAATATAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
24 39 0.98
25 1 0.03
ACGTcount: A:0.09, C:0.34, G:0.32, T:0.25
Consensus pattern (25 bp):
TCCCGGCGGTGCTCCGGTGAGTCTA
Found at i:90105991 original size:43 final size:43
Alignment explanation
Indices: 90105948--90106938 Score: 930
Period size: 43 Copynumber: 23.6 Consensus size: 43
90105938 CTCGGATGTA
* * * * *
90105948 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCATTGGTTGTA
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
** * * *
90105991 CCAGAGCCT-GGAGCACCATCGGTAACCTAGGCCTTTCGTCGTG
1 CGGGAGCCTCGG-GCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90106034 -GGAGAACCTCGGGCATCATCGGCAACCTAGGGCCC-TGGTCATG
1 CGG-GAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTCGTG
*
90106077 CGGCAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90106120 CGAGAGCCTCGGG-ACCATCGGCAACTTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90106162 CAGGAGCCTCGGGCACCATCGG-GACCTAGGCCCTTTGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90106204 CGGGAGCCACGGGCACCA-CGG-TACCTAGGCTCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * * * *
90106245 CGAGAGCCTCGAGTACCATTGGCAATCTAGGCCCTTAGTCATG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
90106288 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * ** * * *
90106331 CGGGACCCTCGAGCACCATCGG-TGCCTAGACCCTTGGTAGTA
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *
90106373 CAGGAGCTTCGGGCACCACCGGC-GCCTTAGTG--CTTGGAT-TTG
1 CGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTG
* * * *
90106415 CGAGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCTTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
90106458 CTGGAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90106501 CGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
90106543 CGGGAGCCTCGGGCACTATCGGTAACCTA-GTCTTCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTG
* * *
90106586 CGGAAGCCTCAGGCACCATCGGCAACCTAGGCCTTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
90106629 CGAGAGCCTCGAG-ACCATCGGC-ACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *** *
90106670 TGGGAGCCTCGAGCACCACCGAC-ACCGT-GGTGGTTAGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTT-GGTCGTG
* **
90106712 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCAGTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
*
90106755 CGGGAGCCTCGGGCACCATCGGTAACCTAGG-CCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * **
90106797 CGAGAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
* *
90106839 CGGGAGCCTC-GG-----T----ATCCTAGGCCCTTGGTCGTC
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
90106872 CAGGAGCCTCGGGCACCATAGGTAACCTAGGCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
90106915 CGGGAGCCTCGGGCACCATCGGCA
1 CGGGAGCCTCGGGCACCATCGGCA
90106939 CCTTGGTGCC
Statistics
Matches: 771, Mismatches: 137, Indels: 80
0.78 0.14 0.08
Matches are distributed among these distances:
32 1 0.00
33 21 0.03
34 2 0.00
36 1 0.00
39 1 0.00
41 72 0.09
42 279 0.36
43 382 0.50
44 12 0.02
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (43 bp):
CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
Found at i:90106044 original size:86 final size:83
Alignment explanation
Indices: 90105948--90106817 Score: 578
Period size: 85 Copynumber: 10.3 Consensus size: 83
90105938 CTCGGATGTA
* * *
90105948 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCATTGGTTGTACCAGAGCCTGGAGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-TTGGTCGT-CCAGAGCCTGGAGCACCATCGG
* *
90106013 TAACCTAGGCCTTTCGTCGTG
64 CAACCTAGGCCCTT-GTCGTG
* * * * * *
90106034 -GGAGAACCTCGGGCATCATCGGCAACCTAGGGCCCTGGTCATGCGGCAGCCTCGG-GCACCATC
1 CGG-GAGCCTCGGGCACCATCGGCAACCTA-GGCCTTGGTCGTCCAG-AGCCT-GGAGCACCATC
90106097 GGCAACCTAGGCCCTTGGTCGTG
62 GGCAACCTAGGCCCTT-GTCGTG
* * *
90106120 CGAGAGCCTCGGG-ACCATCGGCAACTTAGGCCCTTGGTCGTGCAGGAGCCTCGG-GCACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTCCA-GAGCCT-GGAGCACCATCG
*
90106183 G-GACCTAGGCCCTTTGTCGTG
63 GCAACCTAGGCCC-TTGTCGTG
* * * * * *
90106204 CGGGAGCCACGGGCACCA-CGG-TACCTAGGCTCTTGGTCGTGCGAGAGCCTCGAGTACCATTGG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CTTGGTCGT-CCAGAGCCTGGAGCACCATCGG
* *
90106267 CAATCTAGGCCCTTAGTCATG
64 CAACCTAGGCCCTT-GTCGTG
** * *
90106288 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGACCCTCGAGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGT-CCAGAGCCTGGAGCACCATCGG
** * * *
90106353 -TGCCTAGACCCTTGGTAGTA
64 CAACCTAGGCCCTT-GTCGTG
* * * * * *
90106373 CAGGAGCTTCGGGCACCACCGGC-GCCTTAGTG-CTTGGAT-TTGCGAGAGCCTCGG-GCACCAT
1 CGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCTTGG-TCGT-CCAGAGCCT-GGAGCACCAT
* * *
90106434 CAGCAACCTAGGCCCCTGGTCTTG
61 CGGCAACCTAGG-CCCTTGTCGTG
* * * *
90106458 CTGGAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGG-G-ACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGT-CCAGAGCCT-GGAGCACCATCG
*
90106521 GCAACCTAGGCCCCTGGTCGTG
63 GCAACCTAGG-CCCTTGTCGTG
* * * * * * *
90106543 CGGGAGCCTCGGGCACTATCGGTAACCTAGTCTTCTGGTCGTGCGGAAGCCT-CAGGCACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCT-TGGTCGTCCAG-AGCCTGGA-GCACCATCG
*
90106607 GCAACCTAGGCCTTTGGTCGTG
63 GCAACCTAGGCCCTT-GTCGTG
* * *** * * *
90106629 CGAGAGCCTCGAG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCACCGA
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGT-CCAGAGCCTGGAGCACCATCGG
***
90106692 C-ACCGT-GGTGGTTAGAT-GTG
64 CAACC-TAGGCCCTT-G-TCGTG
* * **
90106712 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCAGTGGTCGTGCGGGAGCCTCGG-GCACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-TTGGTCGT-CCAGAGCCT-GGAGCACCATCG
*
90106776 GTAACCTAGG-CCTTGGTCGTG
63 GCAACCTAGGCCCTT-GTCGTG
*
90106797 CGAGAGCCTCGGGCACCATCG
1 CGGGAGCCTCGGGCACCATCG
90106818 ACACCTTGGT
Statistics
Matches: 626, Mismatches: 113, Indels: 91
0.75 0.14 0.11
Matches are distributed among these distances:
82 2 0.00
83 52 0.08
84 133 0.21
85 260 0.42
86 171 0.27
87 8 0.01
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (83 bp):
CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGTCGTCCAGAGCCTGGAGCACCATCGGCA
ACCTAGGCCCTTGTCGTG
Found at i:90106066 original size:19 final size:19
Alignment explanation
Indices: 90106038--90106107 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 19
90106028 GTCGTGGGAG
*
90106038 AACCTCGGGCATCATCGGC
1 AACCTAGGGCATCATCGGC
*
90106057 AACCTAGGGCCCTGGTCATGCGGC
1 AACCTAGGG--C--ATCAT-CGGC
* * *
90106081 AGCCTCGGGCACCATCGGC
1 AACCTAGGGCATCATCGGC
90106100 AACCTAGG
1 AACCTAGG
90106108 CCCTTGGTCG
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 18 0.47
20 3 0.08
21 1 0.03
22 1 0.03
23 4 0.11
24 11 0.29
ACGTcount: A:0.20, C:0.36, G:0.30, T:0.14
Consensus pattern (19 bp):
AACCTAGGGCATCATCGGC
Found at i:90106846 original size:169 final size:169
Alignment explanation
Indices: 90106040--90106849 Score: 519
Period size: 169 Copynumber: 4.8 Consensus size: 169
90106030 CGTGGGAGAA
* * * * *
90106040 CCTCGGGCATCATCGGCAACCTAGGGCC-CTGGTCATGCGGCAGCCTCGGGCACCATCGGCAACC
1 CCTCGGACACCATCGGCAACCTA-GGCCACTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACC
* * * * *
90106104 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGCAACTTAGGCCCTTGGTCGTGCAGGAGC
65 TAGGCCTTTGGTCGTGCGAGAGCCTCGAGACCATCGAC-ACCTAGGCCCTTGGTCGTGCGGGAGC
* * ** *** *
90106169 CTCGGGCACCATCGGGACC-TAGGCCCTTTG-TCGTGCGGGAG
129 CTCGAGCACCACCGACACCGT-GGTGGTTAGAT-GTGCGGGAG
* * * * * *
90106210 CCACGGGCACCA-CGG-TACCTAGGCTC-TTGGTCGTGC-GAGAGCCTC-GAGTACCATTGGCAA
1 CCTCGGACACCATCGGCAACCTAGGC-CACTGGTCGTGCGGA-AGCCTCAG-GCACCATCGGCAA
* * * * * * *
90106270 TCTAGGCCCTTAGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
63 CCTAGGCCTTTGGTCGTGCGAGAGCCTCGAG-ACCATCGAC-ACCTAGGCCCTTGGTCGTGCGGG
* * *** **** * * *
90106335 ACCCTCGAGCACCATCGGTGCC-TAGACCCTT-GGTAGTACAGGAG
126 AGCCTCGAGCACCACCGACACCGT-GGTGGTTAGAT-GTGCGGGAG
* * * * * * * *
90106379 CTTCGGGCACCACCGGC-GCCTTAGTG-C-TTGGAT-TTGC-GAGAGCCTCGGGCACCATCAGCA
1 CCTCGGACACCATCGGCAACC-TAG-GCCACTGG-TCGTGCGGA-AGCCTCAGGCACCATCGGCA
** * * * * *
90106439 ACCTAGGCCCCTGGTCTTGCTG-GAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTGCG
62 ACCTAGGCCTTTGGTCGTGC-GAGAGCCTCGAG-ACCATCGAC-ACCTAGGCCCTTGGTCGTGCG
* * * * **** *
90106503 AGAGCCTCG-GGACCATCGGCAACC-TAGGCCCCT-GGTCGTGCGGGAG
124 GGAGCCTCGAGCACCACCGAC-ACCGT-GGTGGTTAGAT-GTGCGGGAG
* * * * **
90106549 CCTCGGGCACTATCGGTAACCTAGTCTTCTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCACTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACCT
* *
90106614 AGGCCTTTGGTCGTGCGAGAGCCTCGAGACCATCGGCACCTAGGCCCTTGGTCGTGTGGGAGCCT
66 AGGCCTTTGGTCGTGCGAGAGCCTCGAGACCATCGACACCTAGGCCCTTGGTCGTGCGGGAGCCT
90106679 CGAGCACCACCGACACCGTGGTGGTTAGATGTGCGGGAG
131 CGAGCACCACCGACACCGTGGTGGTTAGATGTGCGGGAG
* * * *
90106718 CCTCGGACACCATCGGCAACCTAGGCCAGTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCACTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACCT
* * **
90106783 AGGCC-TTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGAT-GTGCGGGAGC
66 AGGCCTTTGGTCGTGCGAGAGCCTCGAG-ACCATCGACACCTAGGCCCTTGG-TCGTGCGGGAGC
90106846 CTCG
129 CTCG
90106850 GTATCCTAGG
Statistics
Matches: 528, Mismatches: 88, Indels: 49
0.79 0.13 0.07
Matches are distributed among these distances:
167 5 0.01
168 80 0.15
169 221 0.42
170 161 0.30
171 58 0.11
172 3 0.01
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (169 bp):
CCTCGGACACCATCGGCAACCTAGGCCACTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACCT
AGGCCTTTGGTCGTGCGAGAGCCTCGAGACCATCGACACCTAGGCCCTTGGTCGTGCGGGAGCCT
CGAGCACCACCGACACCGTGGTGGTTAGATGTGCGGGAG
Found at i:90106988 original size:43 final size:42
Alignment explanation
Indices: 90106913--90107018 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 42
90106903 CCCCTGGTCG
* *
90106913 TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATA
1 TGCGGGAGCCTCGAGCACCATCGGCACATTGGTG-CTCGGATA
* * * * *
90106956 TGCGGGAGCCTCGAGCAGCATTGGCGCATTGGTGCTTGGATG
1 TGCGGGAGCCTCGAGCACCATCGGCACATTGGTGCTCGGATA
* * *
90106998 TGCGTGAGCCCCGAACACCAT
1 TGCGGGAGCCTCGAGCACCAT
90107019 AGGAAACCTA
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 23 0.44
43 29 0.56
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (42 bp):
TGCGGGAGCCTCGAGCACCATCGGCACATTGGTGCTCGGATA
Found at i:90113709 original size:5 final size:5
Alignment explanation
Indices: 90113675--90113769 Score: 139
Period size: 5 Copynumber: 20.2 Consensus size: 5
90113665 TACCGTGCTG
*
90113675 TGCCG TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA T--CA TGCCA TGCCA
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA
90113723 TGCCA TGCCA TGCCA T--CA TGCCA TGCCA TGCCA TGCCA T--CA TGCCA
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA
90113769 T
1 T
90113770 ACTTCATTCG
Statistics
Matches: 83, Mismatches: 1, Indels: 12
0.86 0.01 0.12
Matches are distributed among these distances:
3 9 0.11
5 74 0.89
ACGTcount: A:0.20, C:0.39, G:0.19, T:0.22
Consensus pattern (5 bp):
TGCCA
Found at i:90113718 original size:23 final size:23
Alignment explanation
Indices: 90113693--90113769 Score: 122
Period size: 23 Copynumber: 3.3 Consensus size: 23
90113683 CATGCCATGC
90113693 CATGCCATGCCATGCCAT--CAT
1 CATGCCATGCCATGCCATGCCAT
90113714 GCCATGCCATGCCATGCCATGCCAT
1 --CATGCCATGCCATGCCATGCCAT
90113739 CATGCCATGCCATGCCATGCCAT
1 CATGCCATGCCATGCCATGCCAT
90113762 CATGCCAT
1 CATGCCAT
90113770 ACTTCATTCG
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
23 49 0.94
25 3 0.06
ACGTcount: A:0.22, C:0.39, G:0.17, T:0.22
Consensus pattern (23 bp):
CATGCCATGCCATGCCATGCCAT
Found at i:90113720 original size:28 final size:28
Alignment explanation
Indices: 90113683--90113761 Score: 158
Period size: 28 Copynumber: 2.8 Consensus size: 28
90113673 TGTGCCGTGC
90113683 CATGCCATGCCATGCCATGCCATGCCAT
1 CATGCCATGCCATGCCATGCCATGCCAT
90113711 CATGCCATGCCATGCCATGCCATGCCAT
1 CATGCCATGCCATGCCATGCCATGCCAT
90113739 CATGCCATGCCATGCCATGCCAT
1 CATGCCATGCCATGCCATGCCAT
90113762 CATGCCATAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.22, C:0.39, G:0.18, T:0.22
Consensus pattern (28 bp):
CATGCCATGCCATGCCATGCCATGCCAT
Found at i:90114546 original size:58 final size:58
Alignment explanation
Indices: 90114451--90114561 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 58
90114441 CCCAACCCTA
* *
90114451 AAAGATAGAATTCAGGTACCGTTACATGTTCGGTACCCAACAATGAATGAATCGCCCC
1 AAAGATAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCGCCCC
* * * *
90114509 AAAGGTAGAATTCAGATACCGTTGCATGTCCGGTACCCCACAATGGATGAATC
1 AAAGATAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
90114562 ATCCCTGTCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 47 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (58 bp):
AAAGATAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCGCCCC
Found at i:90119967 original size:25 final size:24
Alignment explanation
Indices: 90119939--90120004 Score: 105
Period size: 25 Copynumber: 2.7 Consensus size: 24
90119929 CTAATTCAAA
90119939 ACTCACCGTTTCAATTGTTCCCACC
1 ACTCACCGTTTCAATTGTTCCCA-C
*
90119964 ACTCACCGTTTCAATTGTTTCCAC
1 ACTCACCGTTTCAATTGTTCCCAC
*
90119988 ACGCACCGTTTCAATTG
1 ACTCACCGTTTCAATTG
90120005 ATTTCACAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 17 0.44
25 22 0.56
ACGTcount: A:0.21, C:0.35, G:0.11, T:0.33
Consensus pattern (24 bp):
ACTCACCGTTTCAATTGTTCCCAC
Found at i:90120012 original size:24 final size:23
Alignment explanation
Indices: 90119942--90120012 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 23
90119932 ATTCAAAACT
* *
90119942 CACCGTTTCAATTGTTCCCACCACT
1 CACCGTTTCAATTGTT-TCA-CACG
90119967 CACCGTTTCAATTGTTTCCACACG
1 CACCGTTTCAATTGTTT-CACACG
90119991 CACCGTTTCAATTGATTTCACA
1 CACCGTTTCAATTG-TTTCACA
90120013 GATATCCCGC
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
24 21 0.50
25 21 0.50
ACGTcount: A:0.23, C:0.34, G:0.10, T:0.34
Consensus pattern (23 bp):
CACCGTTTCAATTGTTTCACACG
Found at i:90123341 original size:6 final size:6
Alignment explanation
Indices: 90123308--90123386 Score: 56
Period size: 6 Copynumber: 13.3 Consensus size: 6
90123298 TGACCCCCTT
* * **
90123308 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATTAA AATTAA AAAGAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA
** *
90123353 AGATTAA AATTAAA AAGGAA GATTAA AATTAA AA
1 A-ATTAA AATT-AA AATTAA AATTAA AATTAA AA
90123387 CGAATGAGTC
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 40 0.71
7 8 0.14
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.24
Consensus pattern (6 bp):
AATTAA
Found at i:90123360 original size:19 final size:19
Alignment explanation
Indices: 90123336--90123386 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
90123326 TAACATTAAA
90123336 ATTAAAATTAAAAAGAAAG
1 ATTAAAATTAAAAAGAAAG
*
90123355 ATTAAAATTAAAAAGGAAG
1 ATTAAAATTAAAAAGAAAG
90123374 ATTAAAATTAAAA
1 ATTAAAATTAAAA
90123387 CGAATGAGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24
Consensus pattern (19 bp):
ATTAAAATTAAAAAGAAAG
Found at i:90130064 original size:101 final size:101
Alignment explanation
Indices: 90129840--90130057 Score: 301
Period size: 101 Copynumber: 2.1 Consensus size: 101
90129830 GTATATGGGG
* * *
90129840 CATCGACATGTGGATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATGTGTCATTCCTA
1 CATCGAAATGT-GATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGTCATTCCGA
* *
90129905 TATATGTGCGTGAGTAAGACCACGTTTAATACGTTGC
65 TATATGTGCGCGAGTAAGACCACGTTTAATACATTGC
* * * *
90129942 CATCGATATGTGATTCCGATATGTGATGTGCGAGTAAGACTATGGCATCTATATGTGATTCCGAT
1 CATCGAAATGTGATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGTCATTCCGAT
* * * *
90130007 ATATGTGTGCGAGTAAGTCCACGTTTTATACATTGG
66 ATATGTGCGCGAGTAAGACCACGTTTAATACATTGC
*
90130043 CGTCGAAATGTGATT
1 CATCGAAATGTGATT
90130058 TTGATATATG
Statistics
Matches: 102, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
101 92 0.90
102 10 0.10
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (101 bp):
CATCGAAATGTGATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGTCATTCCGAT
ATATGTGCGCGAGTAAGACCACGTTTAATACATTGC
Found at i:90130325 original size:27 final size:27
Alignment explanation
Indices: 90130287--90130341 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
90130277 AAGGTGAGTA
90130287 AGTTACTCAATATTTGTTGCAACTCAT
1 AGTTACTCAATATTTGTTGCAACTCAT
90130314 AGTTACTCAATATTTGTTGCAACTCAT
1 AGTTACTCAATATTTGTTGCAACTCAT
90130341 A
1 A
90130342 TTTGAAGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (27 bp):
AGTTACTCAATATTTGTTGCAACTCAT
Found at i:90130344 original size:16 final size:17
Alignment explanation
Indices: 90130291--90130345 Score: 54
Period size: 16 Copynumber: 3.7 Consensus size: 17
90130281 TGAGTAAGTT
90130291 ACTCAATATTTGTTGCA
1 ACTCAATATTTGTTGCA
90130308 ACTC-ATA---GTT---
1 ACTCAATATTTGTTGCA
90130318 ACTCAATATTTGTTGCA
1 ACTCAATATTTGTTGCA
90130335 ACTC-ATATTTG
1 ACTCAATATTTG
90130346 AAGCAAAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 15
0.67 0.00 0.33
Matches are distributed among these distances:
10 4 0.13
11 3 0.10
13 3 0.10
14 3 0.10
16 10 0.32
17 8 0.26
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (17 bp):
ACTCAATATTTGTTGCA
Found at i:90132531 original size:87 final size:87
Alignment explanation
Indices: 90132430--90132601 Score: 213
Period size: 87 Copynumber: 2.0 Consensus size: 87
90132420 TGACAGTATA
* * * * * * *
90132430 TTTTCTTCGATTTATCCGATGATGCACTGTGTGTGCCAGCATATTTTC-TTCAGTTTATTCGATG
1 TTTTCTTCGATTTATCCAATGATGCACTATATGTGCCAGCATA-TATCATTCAGTTTATCCAACG
* *
90132494 ATGCACTATGTGTGCTAGTATTT
65 ATGCACTATATATGCTAGTATTT
* *
90132517 TTTTCTTC-AGTTTATCCAATGATGCACTATATGTTCCAGCATATATCATTTAGTTTATCCAACG
1 TTTTCTTCGA-TTTATCCAATGATGCACTATATGTGCCAGCATATATCATTCAGTTTATCCAACG
90132581 ATGCACTATATATGCTAGTAT
65 ATGCACTATATATGCTAGTAT
90132602 AGATACTTTG
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
86 4 0.06
87 68 0.94
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (87 bp):
TTTTCTTCGATTTATCCAATGATGCACTATATGTGCCAGCATATATCATTCAGTTTATCCAACGA
TGCACTATATATGCTAGTATTT
Found at i:90132539 original size:44 final size:43
Alignment explanation
Indices: 90132417--90132589 Score: 179
Period size: 43 Copynumber: 4.0 Consensus size: 43
90132407 GGGTGTTACA
* * *
90132417 GTGTGACAGTATATTTTCTTC-GATTTATCCGATGATGCACTGT
1 GTGTGCCAGCATATTTTCTTCAG-TTTATCCGATGATGCACTAT
*
90132460 GTGTGCCAGCATATTTTCTTCAGTTTATTCGATGATGCACTAT
1 GTGTGCCAGCATATTTTCTTCAGTTTATCCGATGATGCACTAT
* * * *
90132503 GTGTGCTAGTATTTTTTTCTTCAGTTTATCCAATGATGCACTAT
1 GTGTGCCAGCA-TATTTTCTTCAGTTTATCCGATGATGCACTAT
* * * * * *
90132547 ATGTTCCAGCATA-TATCATTTAGTTTATCCAACGATGCACTAT
1 GTGTGCCAGCATATTTTC-TTCAGTTTATCCGATGATGCACTAT
90132590 ATATGCTAGT
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
42 3 0.03
43 70 0.64
44 37 0.34
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (43 bp):
GTGTGCCAGCATATTTTCTTCAGTTTATCCGATGATGCACTAT
Found at i:90132616 original size:43 final size:43
Alignment explanation
Indices: 90132525--90132669 Score: 157
Period size: 43 Copynumber: 3.4 Consensus size: 43
90132515 TTTTTTCTTC
* * * * *
90132525 AGTTTATCCAATGATGCACTATATGTTCCAGCATATAT-CATTT
1 AGTTTATCCAATGATGCACTATATATGCTAGTATAGATAC-TTT
*
90132568 AGTTTATCCAACGATGCACTATATATGCTAGTATAGATACTTT
1 AGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTT
* *** * *
90132611 GGTTTATTTGATGATGCACTGTATTTGCTAGTATAGATACTTT
1 AGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTT
*
90132654 AGTTTATCCGATGATG
1 AGTTTATCCAATGATG
90132670 AGATGCTTCA
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
43 84 0.99
44 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (43 bp):
AGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTT
Found at i:90132759 original size:43 final size:43
Alignment explanation
Indices: 90132670--90132782 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 43
90132660 TCCGATGATG
* * * * * *
90132670 AGATGCTTCAATTTATCCGATGATGAACTGTATGTGCCAGTAT
1 AGATACTTCAATTTATCTGATTATGCATTGTATGAGCCAGTAT
*
90132713 AGATATTTCAGA-TTAT-TCGATTATGCATTGTATGAGCCAGTAT
1 AGATACTTCA-ATTTATCT-GATTATGCATTGTATGAGCCAGTAT
90132756 AGATACTTCAATTTATCTGATTATGCA
1 AGATACTTCAATTTATCTGATTATGCA
90132783 CTATATGTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
42 1 0.02
43 55 0.95
44 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (43 bp):
AGATACTTCAATTTATCTGATTATGCATTGTATGAGCCAGTAT
Found at i:90136857 original size:47 final size:47
Alignment explanation
Indices: 90136785--90136915 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
90136775 TACAATTGAT
*
90136785 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTCA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCA
* * ** *
90136832 GAGTACCTAAACCATGGCCTGTAGCCAAATCAAGGTAACTCCTCTCA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCA
* * *
90136879 AAATACCTATATCATGGCCCATAGCCAAATCTAGGTA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
90136916 TTATTCGTAC
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCA
Found at i:90137909 original size:26 final size:26
Alignment explanation
Indices: 90137879--90137930 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
90137869 CAAATTAGCT
90137879 TTATTTAAAACCATTTAAAAACATTC
1 TTATTTAAAACCATTTAAAAACATTC
90137905 TTATTTAAAACCATTTAAAAACATTC
1 TTATTTAAAACCATTTAAAAACATTC
90137931 ATTTAATGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (26 bp):
TTATTTAAAACCATTTAAAAACATTC
Found at i:90153493 original size:15 final size:15
Alignment explanation
Indices: 90153468--90153503 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
90153458 TAAGGTCACA
90153468 CTGTAACACCCCTTAC
1 CTGT-ACACCCCTTAC
90153484 CTGTACACCCCTTAC
1 CTGTACACCCCTTAC
90153499 CTGTA
1 CTGTA
90153504 TCTGATGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.22, C:0.42, G:0.08, T:0.28
Consensus pattern (15 bp):
CTGTACACCCCTTAC
Found at i:90155261 original size:45 final size:45
Alignment explanation
Indices: 90155206--90155291 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
90155196 CCAAAACATG
* * *
90155206 TGTCATATATATCACGAGCTCAGACCACAACTCAATGAGTTCAAA
1 TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAAA
* *
90155251 TGTCACATATATCATGAATTCAAACCACAACTCAATGAGTT
1 TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTT
90155292 TAGATCACAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAAA
Found at i:90158908 original size:18 final size:18
Alignment explanation
Indices: 90158881--90158923 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
90158871 TGTTAATTCA
90158881 AACATATAATAAATTAAC
1 AACATATAATAAATTAAC
* *
90158899 AACATTTAATATATTAAC
1 AACATATAATAAATTAAC
*
90158917 TACATAT
1 AACATAT
90158924 TATTATCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (18 bp):
AACATATAATAAATTAAC
Found at i:90161695 original size:42 final size:42
Alignment explanation
Indices: 90161636--90161748 Score: 138
Period size: 43 Copynumber: 2.7 Consensus size: 42
90161626 CTAAGACAAT
* * **
90161636 GTGTAAGACCATATCTGGGTTATGGCCTCAATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATATGAGATCCC
* *
90161678 GTGTAAGACCATATCTGGGCTATTGGCATCGATATGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCAATATGAGATCCC
*
90161721 ATGTAA-ATCCATATCTGGGATATGGCAT
1 GTGTAAGA-CCATATCTGGGATATGGCAT
90161749 TGGTATGGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATATGAGATCCC
Found at i:90165580 original size:43 final size:43
Alignment explanation
Indices: 90165469--90165583 Score: 185
Period size: 43 Copynumber: 2.7 Consensus size: 43
90165459 AAAGCACCAT
*
90165469 TAAAGAACGTGACCTTTAGCAGCGCCTTTCACACAAATGCCGC
1 TAAAGAACGTGACCTTTAGCAGCGCTTTTCACACAAATGCCGC
* * * *
90165512 TAAAAAAGGTGACCTTTAGCAGCGCTTTTCATACAAATGTCGC
1 TAAAGAACGTGACCTTTAGCAGCGCTTTTCACACAAATGCCGC
90165555 TAAAGAACGTGACCTTTAGCAGCGCTTTT
1 TAAAGAACGTGACCTTTAGCAGCGCTTTT
90165584 ACATGAACGT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
TAAAGAACGTGACCTTTAGCAGCGCTTTTCACACAAATGCCGC
Found at i:90172076 original size:40 final size:40
Alignment explanation
Indices: 90171999--90172216 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
90171989 AACCCGAGTA
* *
90171999 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
90172038 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
90172078 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
90172118 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
90172158 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
90172198 CCTTCTAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
90172217 TTATCATCCG
Statistics
Matches: 167, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:90177814 original size:13 final size:14
Alignment explanation
Indices: 90177788--90177816 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
90177778 ACTAACGACG
90177788 AATTAAACCATTAT
1 AATTAAACCATTAT
90177802 AATTAAA-CATTAT
1 AATTAAACCATTAT
90177815 AA
1 AA
90177817 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:90181864 original size:23 final size:23
Alignment explanation
Indices: 90181837--90181884 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
90181827 AGAATCCGCA
90181837 GGATGCCTTAATAATCCATCATC
1 GGATGCCTTAATAATCCATCATC
90181860 GGATGCCTTAATAATCCATCATC
1 GGATGCCTTAATAATCCATCATC
90181883 GG
1 GG
90181885 TTCGTTGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (23 bp):
GGATGCCTTAATAATCCATCATC
Found at i:90182915 original size:9 final size:9
Alignment explanation
Indices: 90182901--90183011 Score: 84
Period size: 9 Copynumber: 12.0 Consensus size: 9
90182891 TAAGTATAAT
90182901 TAAGTTATG
1 TAAGTTATG
90182910 TAAGTTATG
1 TAAGTTATG
* * *
90182919 ATATGATATA
1 -TAAGTTATG
*
90182929 TATATTTATG
1 TA-AGTTATG
90182939 T-A-TTATG
1 TAAGTTATG
90182946 TAAGTTATG
1 TAAGTTATG
* *
90182955 ATATGATATATA
1 -TAAG-T-TATG
90182967 TAAGTTAT-
1 TAAGTTATG
90182975 TAAGTTATG
1 TAAGTTATG
90182984 TAAGTTATG
1 TAAGTTATG
90182993 TAAGTTATG
1 TAAGTTATG
*
90183002 ATATGTTATG
1 -TAAGTTATG
90183012 ATATATACAG
Statistics
Matches: 82, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
7 6 0.07
8 10 0.12
9 37 0.45
10 22 0.27
11 4 0.05
12 3 0.04
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:90182947 original size:36 final size:38
Alignment explanation
Indices: 90182899--90182992 Score: 149
Period size: 36 Copynumber: 2.5 Consensus size: 38
90182889 TGTAAGTATA
*
90182899 ATTAAGTTATGTAAGTTATGATATGATATATAT-ATTT
1 ATTAAGTTATGTAAGTTATGATATGATATATATAAGTT
90182936 ATGT-A-TTATGTAAGTTATGATATGATATATATAAGTT
1 AT-TAAGTTATGTAAGTTATGATATGATATATATAAGTT
90182973 ATTAAGTTATGTAAGTTATG
1 ATTAAGTTATGTAAGTTATG
90182993 TAAGTTATGA
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
36 28 0.54
37 9 0.17
38 15 0.29
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (38 bp):
ATTAAGTTATGTAAGTTATGATATGATATATATAAGTT
Found at i:90187995 original size:39 final size:39
Alignment explanation
Indices: 90187945--90188241 Score: 389
Period size: 39 Copynumber: 7.6 Consensus size: 39
90187935 ATAATGGTGA
* *
90187945 ATTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
90187984 GTTATATCCGGGCTAAGTCCCAAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* ** *
90188023 TTTATATCCGGGCTAAGTCCCGAAGAAATTCATGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
90188062 ATTATATCCGGGCTAAGTCCTGAAGGAATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
90188101 ATTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
90188140 GTTATATCCGGGCTAAGTCCCGAAAGCATTCGTGCTGAT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
90188179 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
90188218 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
90188242 CATGCTTTGT
Statistics
Matches: 229, Mismatches: 27, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
39 208 0.91
40 21 0.09
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:90190481 original size:43 final size:43
Alignment explanation
Indices: 90190429--90190530 Score: 159
Period size: 43 Copynumber: 2.4 Consensus size: 43
90190419 AGTTTAATCT
* *
90190429 ATTGGCACTAAGTTTGCGATACAATCATATCTTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATCATAGCTTCGGCTAATTA
* *
90190472 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGTTAATTA
1 ATTGGCACTAAGTGTGCGATACAATCATAGCTTCGGCTAATTA
*
90190515 ATTAGCACTAAGTGTG
1 ATTGGCACTAAGTGTG
90190531 TGAGTTTATT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATCATAGCTTCGGCTAATTA
Found at i:90192511 original size:18 final size:17
Alignment explanation
Indices: 90192459--90192509 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
90192449 AACAGATGGG
90192459 TTTGATTTGGGGAAAAT
1 TTTGATTTGGGGAAAAT
90192476 TTAATG-TTTAGGGG-AAAT
1 TT--TGATTT-GGGGAAAAT
90192494 TTTGATTTGGGGAAAA
1 TTTGATTTGGGGAAAA
90192510 ATAAGGGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 6 0.21
17 8 0.28
18 9 0.31
19 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.39
Consensus pattern (17 bp):
TTTGATTTGGGGAAAAT
Found at i:90192782 original size:40 final size:41
Alignment explanation
Indices: 90192658--90192782 Score: 180
Period size: 41 Copynumber: 3.1 Consensus size: 41
90192648 GCACCGCTAG
* * * *
90192658 TTCTCGATCTTTAGCGGCACTTTTCAAAAAAGCGACGCTAG
1 TTCTCGATCTTTAGCGGCATTTTTCAAAAAAGCGCCACTAA
* *
90192699 TTCTCGATCTTTAGCAGCGTTTTTCAAAAAAGCGCCACTAA
1 TTCTCGATCTTTAGCGGCATTTTTCAAAAAAGCGCCACTAA
*
90192740 TTCTCGATCTTTAGCGGCATTTTTC-AGAAAGCGCCACTAA
1 TTCTCGATCTTTAGCGGCATTTTTCAAAAAAGCGCCACTAA
90192780 TTC
1 TTC
90192783 CACTAGAGAC
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 17 0.23
41 58 0.77
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (41 bp):
TTCTCGATCTTTAGCGGCATTTTTCAAAAAAGCGCCACTAA
Found at i:90193171 original size:22 final size:21
Alignment explanation
Indices: 90193125--90193193 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
90193115 TTTTGTCATG
* *
90193125 TAACCCTTAAACCTTAATACCC
1 TAACCCTTAAACCATAA-ACAC
90193147 TAACCCTTAAAACCATAAACAC
1 TAACCCTT-AAACCATAAACAC
*
90193169 TAAGACCC-TAAACCCTAAACAC
1 T-A-ACCCTTAAACCATAAACAC
90193191 TAA
1 TAA
90193194 ATCTCAAACC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 25 0.61
23 10 0.24
24 4 0.10
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.20
Consensus pattern (21 bp):
TAACCCTTAAACCATAAACAC
Found at i:90193179 original size:8 final size:7
Alignment explanation
Indices: 90193126--90193194 Score: 50
Period size: 7 Copynumber: 9.3 Consensus size: 7
90193116 TTTGTCATGT
90193126 AACCCTTA
1 AACCC-TA
*
90193134 AACCTTA
1 AACCCTA
90193141 ATACCCT-
1 A-ACCCTA
90193148 AACCCTTAA
1 AACCC-T-A
*
90193157 AACCATA
1 AACCCTA
*
90193164 AACACTA
1 AACCCTA
90193171 AGACCCTA
1 A-ACCCTA
90193179 AACCCTA
1 AACCCTA
*
90193186 AACACTA
1 AACCCTA
90193193 AA
1 AA
90193195 TCTCAAACCC
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
6 4 0.08
7 26 0.53
8 15 0.31
9 4 0.08
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.19
Consensus pattern (7 bp):
AACCCTA
Found at i:90193186 original size:15 final size:15
Alignment explanation
Indices: 90193126--90193187 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
90193116 TTTGTCATGT
*
90193126 AACCCTTAAACCTTAA
1 AACCC-TAAACCCTAA
*
90193142 TACCCT-AACCCTTAA
1 AACCCTAAACCC-TAA
* *
90193157 AACCATAAACACTAA
1 AACCCTAAACCCTAA
*
90193172 GACCCTAAACCCTAA
1 AACCCTAAACCCTAA
90193187 A
1 A
90193188 CACTAAATCT
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
14 4 0.11
15 23 0.66
16 8 0.23
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.19
Consensus pattern (15 bp):
AACCCTAAACCCTAA
Found at i:90193684 original size:18 final size:17
Alignment explanation
Indices: 90193661--90193695 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
90193651 AAAGTCAGTT
*
90193661 TCAAATATCAAAATAAAA
1 TCAAAT-TCAAAACAAAA
90193679 TCAAATTCAAAACAAAA
1 TCAAATTCAAAACAAAA
90193696 GTAAGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (17 bp):
TCAAATTCAAAACAAAA
Found at i:90193921 original size:41 final size:41
Alignment explanation
Indices: 90193866--90194013 Score: 154
Period size: 41 Copynumber: 3.6 Consensus size: 41
90193856 TGTTTGTACG
* * * * * * *
90193866 AAAAATGCCACTATTGTTTAGTTTTTTGTGGTGTTTGGACC
1 AAAAACGCCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
*
90193907 AAAAACGTCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
1 AAAAACGCCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
* * *
90193948 AAAAATGCCGCTATTGCTCAGTTTTTAGCGGCGTTT-AAAC
1 AAAAACGCCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
** *
90193988 AAAAAATACCGTTATTGCTCAGTTTT
1 -AAAAACGCCGCTATTGCTCAGTTTT
90194014 AGTGGCATTT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 3 0.03
41 89 0.97
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (41 bp):
AAAAACGCCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
Found at i:90195476 original size:42 final size:43
Alignment explanation
Indices: 90195399--90195479 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
90195389 TTACATGTAA
*
90195399 TCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACAAAG
1 TCAAATATCGATGCCACTGTCCCAGACAGGATCTTACACAAAG
* *
90195442 TCAAATA-CGATGCCGA-TGTCCCAGATATGATCTTACAC
1 TCAAATATCGATGCC-ACTGTCCCAGACAGGATCTTACAC
90195480 GTAAATCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 26 0.76
43 8 0.24
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
TCAAATATCGATGCCACTGTCCCAGACAGGATCTTACACAAAG
Found at i:90200254 original size:65 final size:65
Alignment explanation
Indices: 90200180--90200308 Score: 258
Period size: 65 Copynumber: 2.0 Consensus size: 65
90200170 TAAATTATAA
90200180 AAACATAAAATAAAAGTAGAGTTTATATTTTATGATATGATCAATAAATGAAATAGAGATGTGAT
1 AAACATAAAATAAAAGTAGAGTTTATATTTTATGATATGATCAATAAATGAAATAGAGATGTGAT
90200245 AAACATAAAATAAAAGTAGAGTTTATATTTTATGATATGATCAATAAATGAAATAGAGATGTGA
1 AAACATAAAATAAAAGTAGAGTTTATATTTTATGATATGATCAATAAATGAAATAGAGATGTGA
90200309 ATCTAATCAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.32
Consensus pattern (65 bp):
AAACATAAAATAAAAGTAGAGTTTATATTTTATGATATGATCAATAAATGAAATAGAGATGTGAT
Found at i:90201022 original size:16 final size:15
Alignment explanation
Indices: 90200979--90201021 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
90200969 AAGAAAATTG
*
90200979 AAAAGATGTAAAATTA
1 AAAAGATG-AAAATCA
* *
90200995 AAAGGAAGAAAATCA
1 AAAAGATGAAAATCA
90201010 AAAAGATGAAAA
1 AAAAGATGAAAA
90201022 AAATCATTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.67, C:0.02, G:0.16, T:0.14
Consensus pattern (15 bp):
AAAAGATGAAAATCA
Found at i:90202860 original size:23 final size:23
Alignment explanation
Indices: 90202833--90202885 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
90202823 TAATATCACC
90202833 TTTCATATTGCCATTACATTTCA
1 TTTCATATTGCCATTACATTTCA
90202856 TTTCATATTGCCATTACATTTCA
1 TTTCATATTGCCATTACATTTCA
90202879 TTTCATA
1 TTTCATA
90202886 ACCAAACGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.04, T:0.49
Consensus pattern (23 bp):
TTTCATATTGCCATTACATTTCA
Found at i:90203901 original size:23 final size:23
Alignment explanation
Indices: 90203875--90203918 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
90203865 AGATATTTTA
*
90203875 CAGTCAAGATGCTAGAATATATG
1 CAGTCAAGATGCCAGAATATATG
*
90203898 CAGTCAAGCTGCCAGAATATA
1 CAGTCAAGATGCCAGAATATA
90203919 GGTGATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (23 bp):
CAGTCAAGATGCCAGAATATATG
Found at i:90212128 original size:18 final size:18
Alignment explanation
Indices: 90212105--90212142 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
90212095 AATATATATT
90212105 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
90212123 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
90212141 AA
1 AA
90212143 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:90212135 original size:13 final size:13
Alignment explanation
Indices: 90212119--90212143 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90212109 CAAGTACCCA
90212119 ACCCAACCCAATT
1 ACCCAACCCAATT
90212132 ACCCAACCCAAT
1 ACCCAACCCAAT
90212144 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:90212179 original size:6 final size:6
Alignment explanation
Indices: 90212179--90212219 Score: 73
Period size: 6 Copynumber: 6.7 Consensus size: 6
90212169 AATAAAAATA
90212179 AAAATCT AAAACT AAAACT AAAACT AAAACT AAAACT AAAA
1 AAAA-CT AAAACT AAAACT AAAACT AAAACT AAAACT AAAA
90212220 AATATATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 30 0.88
7 4 0.12
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAACT
Found at i:90212183 original size:12 final size:12
Alignment explanation
Indices: 90212168--90212220 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
90212158 ATAATTTAAT
*
90212168 AAATAAAAATAA
1 AAATAAAACTAA
90212180 AAATCTAAAACTAA
1 AAA--TAAAACTAA
*
90212194 AACTAAAACTAA
1 AAATAAAACTAA
*
90212206 AACTAAAACTAA
1 AAATAAAACTAA
90212218 AAA
1 AAA
90212221 ATATATAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
12 26 0.72
14 10 0.28
ACGTcount: A:0.72, C:0.11, G:0.00, T:0.17
Consensus pattern (12 bp):
AAATAAAACTAA
Found at i:90212258 original size:9 final size:9
Alignment explanation
Indices: 90212240--90212343 Score: 113
Period size: 9 Copynumber: 11.6 Consensus size: 9
90212230 TTTATACAAA
*
90212240 TAATTTGGT
1 TAATTCGGT
90212249 TAATTCGGT
1 TAATTCGGT
90212258 TAATTCGAG-
1 TAATTCG-GT
*
90212267 TAGTTCGGT
1 TAATTCGGT
90212276 TAATTCGAG-
1 TAATTCG-GT
*
90212285 TAGTTCGGT
1 TAATTCGGT
*
90212294 TAATTCGGG
1 TAATTCGGT
*
90212303 TAATTCAGT
1 TAATTCGGT
*
90212312 TAATTCGAT
1 TAATTCGGT
*
90212321 TAATTCAGT
1 TAATTCGGT
90212330 TAATTCGGT
1 TAATTCGGT
90212339 TAATT
1 TAATT
90212344 TTATACTTAT
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
8 2 0.03
9 74 0.95
10 2 0.03
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (9 bp):
TAATTCGGT
Found at i:90212337 original size:36 final size:36
Alignment explanation
Indices: 90212248--90212343 Score: 129
Period size: 36 Copynumber: 2.7 Consensus size: 36
90212238 AATAATTTGG
* * *
90212248 TTAATTCGGTTAATTCGAGTAGTTCGGTTAATTCGA
1 TTAATTCGGTTAATTCGGGTAATTCAGTTAATTCGA
* *
90212284 GTAGTTCGGTTAATTCGGGTAATTCAGTTAATTCGA
1 TTAATTCGGTTAATTCGGGTAATTCAGTTAATTCGA
* *
90212320 TTAATTCAGTTAATTCGGTTAATT
1 TTAATTCGGTTAATTCGGGTAATT
90212344 TTATACTTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (36 bp):
TTAATTCGGTTAATTCGGGTAATTCAGTTAATTCGA
Found at i:90221199 original size:40 final size:40
Alignment explanation
Indices: 90221136--90221216 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
90221126 TGCGGTACCT
* *
90221136 TATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
1 TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
* * * *
90221176 TATGGTGTGCGGGGATGGGTGGGTCGATTTTATCCCGATA
1 TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
90221216 T
1 T
90221217 GGTGTGATGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.12, G:0.36, T:0.35
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
Found at i:90225297 original size:16 final size:16
Alignment explanation
Indices: 90225266--90225305 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
90225256 TATATATGCA
90225266 AATAAA-AAAAAAGTG
1 AATAAATAAAAAAGTG
*
90225281 AATAAATAAATAAGTG
1 AATAAATAAAAAAGTG
*
90225297 AACAAATAA
1 AATAAATAA
90225306 GTGAAGAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.70, C:0.03, G:0.10, T:0.17
Consensus pattern (16 bp):
AATAAATAAAAAAGTG
Found at i:90228817 original size:25 final size:25
Alignment explanation
Indices: 90228770--90228818 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
90228760 TTATTTTTGA
* *
90228770 TAGTATATCCTGAAAGTAATATAGG
1 TAGTATATACTGAAACTAATATAGG
* *
90228795 TAGTATATACTGAGACTACTATAG
1 TAGTATATACTGAAACTAATATAG
90228819 ATAGACTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (25 bp):
TAGTATATACTGAAACTAATATAGG
Found at i:90234226 original size:48 final size:48
Alignment explanation
Indices: 90234170--90234352 Score: 224
Period size: 48 Copynumber: 3.8 Consensus size: 48
90234160 TGAGTATTGG
* * * *
90234170 GATCCTGTGTATGACCATGTCTGGGATATGGCATCGGCATTAATAAGA
1 GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGT
* * *
90234218 GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGT
1 GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGT
* * * *
90234266 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATATGT
1 GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGT
* * *
90234314 GA-GCTAGTGTAAGACCATGCCTGGGACATGGTATCGGCA
1 GATCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCA
90234353 CTGACATGAA
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
47 1 0.01
48 113 0.99
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGT
Found at i:90234306 original size:96 final size:96
Alignment explanation
Indices: 90234176--90234349 Score: 251
Period size: 96 Copynumber: 1.8 Consensus size: 96
90234166 TTGGGATCCT
* * * * *
90234176 GTGTATGACCATGTCTGGGATATGGCATCGGCATTAATAAGAGATCCT-GTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATAAGAGA-CCTAGTGTAAGACCATGCCT
90234240 GGGACATGGCATCGACGTTGATATGTGAGCCA
65 GGGACATGGCATCGACGTTGATATGTGAGCCA
* * *
90234272 GTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATATGTGAGCTAGTGTAAGACCATGCCTG
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATAAGAGACCTAGTGTAAGACCATGCCTG
*
90234337 GGACATGGTATCG
66 GGACATGGCATCG
90234350 GCACTGACAT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
95 2 0.03
96 66 0.97
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATAAGAGACCTAGTGTAAGACCATGCCTG
GGACATGGCATCGACGTTGATATGTGAGCCA
Found at i:90243285 original size:25 final size:25
Alignment explanation
Indices: 90243251--90243300 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
90243241 TACCACCTGA
90243251 ATTAGAGAAGATTCATGATGTGTTC
1 ATTAGAGAAGATTCATGATGTGTTC
90243276 ATTAGAGAAGATTCATGATGTGTTC
1 ATTAGAGAAGATTCATGATGTGTTC
90243301 TATGTATCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (25 bp):
ATTAGAGAAGATTCATGATGTGTTC
Found at i:90248989 original size:17 final size:18
Alignment explanation
Indices: 90248967--90249000 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
90248957 CATTTTCGGT
90248967 CGTGTGGG-CCATATGGA
1 CGTGTGGGTCCATATGGA
90248984 CGTGTGGGTCCATATGG
1 CGTGTGGGTCCATATGG
90249001 GTTGACAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.15, C:0.18, G:0.41, T:0.26
Consensus pattern (18 bp):
CGTGTGGGTCCATATGGA
Found at i:90251982 original size:41 final size:41
Alignment explanation
Indices: 90251923--90252078 Score: 160
Period size: 41 Copynumber: 3.9 Consensus size: 41
90251913 AGAATATTTT
* *
90251923 TGAATTGCACATACGTGCCTCTTTTTGTACTTCAGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
* * *
90251964 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGGTACCCA
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
* * * * * * *
90252005 TTAATAGCACATGCATG-CCCTGTTTATA--TGA-TACTCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
90252042 TGAATTGCACATACGTGCCCCTGTTTAG-ACTTCAGTA
1 TGAATTGCACATACGTGCCCCTGTTT-GTACTTCAGTA
90252079 ATTCTGAATC
Statistics
Matches: 89, Mismatches: 21, Indels: 10
0.74 0.17 0.08
Matches are distributed among these distances:
37 17 0.19
38 10 0.11
40 12 0.13
41 50 0.56
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
Found at i:90252547 original size:13 final size:13
Alignment explanation
Indices: 90252508--90252548 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
90252498 ATTTTTAAAT
90252508 TTTAGTGATAATA
1 TTTAGTGATAATA
*
90252521 TTT-CTGAT--TA
1 TTTAGTGATAATA
90252531 TTTAGTGATAATA
1 TTTAGTGATAATA
90252544 TTTAG
1 TTTAG
90252549 GAAAAATCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
10 5 0.22
11 4 0.17
12 4 0.17
13 10 0.43
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (13 bp):
TTTAGTGATAATA
Found at i:90253816 original size:41 final size:41
Alignment explanation
Indices: 90253756--90253915 Score: 212
Period size: 41 Copynumber: 3.9 Consensus size: 41
90253746 CCTTGAGTCC
* * *
90253756 AGCAGGCTTTATGCTGGTGTATTTTATCAGGCTTTGTGCCT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* *
90253797 GGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGTCT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* * * * * * *
90253838 AGCAAGCTTCGTGCTGATGTAAATTATCAGGCTTTGTACCA
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
90253879 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGT
90253916 TGTCGGTGTA
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 100 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (41 bp):
AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
Found at i:90253928 original size:26 final size:25
Alignment explanation
Indices: 90253881--90253944 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 25
90253871 TTGTACCAAG
90253881 CAGGCTTTGTGCCGGTGTATATTAT
1 CAGGCTTTGTGCCGGTGTATATTAT
*
90253906 CAGGCTTTGTTGTCGGTGTATATTAT
1 CAGGCTTTG-TGCCGGTGTATATTAT
*
90253932 CAGGCTTTCTGCC
1 CAGGCTTTGTGCC
90253945 TAGCAGGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
25 12 0.34
26 23 0.66
ACGTcount: A:0.14, C:0.19, G:0.27, T:0.41
Consensus pattern (25 bp):
CAGGCTTTGTGCCGGTGTATATTAT
Found at i:90253939 original size:67 final size:67
Alignment explanation
Indices: 90253855--90254048 Score: 307
Period size: 67 Copynumber: 2.9 Consensus size: 67
90253845 TTCGTGCTGA
* * * * *
90253855 TGTAAATTATCAGGCTTTGTACCAAGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
1 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
90253920 GG
66 GG
90253922 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
1 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
90253987 GG
66 GG
* * * *
90253989 TGTATATTATCAAGCTTTCTGCCTAGCAGGATTTGTGTCAGTGTATATTATCAGACTTTG
1 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTG
90254049 CGCCTAACAG
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 118 1.00
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.40
Consensus pattern (67 bp):
TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
GG
Found at i:90253982 original size:25 final size:25
Alignment explanation
Indices: 90253948--90254011 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
90253938 TTCTGCCTAG
*
90253948 CAGGATTTGTGCCGGTGTATATTAT
1 CAGGCTTTGTGCCGGTGTATATTAT
*
90253973 CAGGCTTTGTTGTCGGTGTATATTAT
1 CAGGCTTTG-TGCCGGTGTATATTAT
* *
90253999 CAAGCTTTCTGCC
1 CAGGCTTTGTGCC
90254012 TAGCAGGATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
25 11 0.33
26 22 0.67
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.41
Consensus pattern (25 bp):
CAGGCTTTGTGCCGGTGTATATTAT
Found at i:90254054 original size:41 final size:42
Alignment explanation
Indices: 90253973--90254059 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 42
90253963 TGTATATTAT
* * *
90253973 CAGGCTTTGTTGTCGGTGTATATTATCAAGCTTTCTGCCTAG
1 CAGGATTTGTTGTCAGTGTATATTATCAAGCTTTCTGCCTAA
90254015 CAGGATTTG-TGTCAGTGTATATTATC-AGACTTTGC-GCCTAA
1 CAGGATTTGTTGTCAGTGTATATTATCAAG-CTTT-CTGCCTAA
90254056 CAGG
1 CAGG
90254060 CTTCTTGCTG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
40 2 0.05
41 29 0.73
42 9 0.22
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (42 bp):
CAGGATTTGTTGTCAGTGTATATTATCAAGCTTTCTGCCTAA
Found at i:90267441 original size:43 final size:43
Alignment explanation
Indices: 90267393--90267539 Score: 195
Period size: 43 Copynumber: 3.4 Consensus size: 43
90267383 GAACTCGCAT
* *
90267393 ACTTAGTGCCAATTAATTAGTTGAAGCTATAACTGTATCACAC
1 ACTTAGTGCCAATTAATTAGTCGAAGCTATAATTGTATCACAC
* * *
90267436 ACTTAGTGCTAATTAATTAGTCGACGCTATAATTGTATCAGAC
1 ACTTAGTGCCAATTAATTAGTCGAAGCTATAATTGTATCACAC
* ** * *
90267479 ACTTAGCGCCAATTAATTAAACGATGCTATAATTGTATCTCAC
1 ACTTAGTGCCAATTAATTAGTCGAAGCTATAATTGTATCACAC
*
90267522 ACTTAGTCCCAATTAATT
1 ACTTAGTGCCAATTAATT
90267540 CAACTGAACT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (43 bp):
ACTTAGTGCCAATTAATTAGTCGAAGCTATAATTGTATCACAC
Found at i:90276565 original size:17 final size:17
Alignment explanation
Indices: 90276543--90276580 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
90276533 GACGATCAAT
90276543 TTGCGGTAGCAATG-AGC
1 TTGCGGTAGC-ATGAAGC
90276560 TTGCGGTAGCATGAAGC
1 TTGCGGTAGCATGAAGC
90276577 TTGC
1 TTGC
90276581 TACTGCGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.21, C:0.18, G:0.34, T:0.26
Consensus pattern (17 bp):
TTGCGGTAGCATGAAGC
Found at i:90277068 original size:6 final size:6
Alignment explanation
Indices: 90277035--90277099 Score: 73
Period size: 6 Copynumber: 11.2 Consensus size: 6
90277025 TGATCCCCTT
* * *
90277035 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATTAA AAATAA AGATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA A-ATTAA
90277081 AATTAA AATTAA AATTAA A
1 AATTAA AATTAA AATTAA A
90277100 GAAAATATAA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
4 4 0.08
5 4 0.08
6 38 0.75
7 5 0.10
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.28
Consensus pattern (6 bp):
AATTAA
Found at i:90277085 original size:25 final size:25
Alignment explanation
Indices: 90277044--90277101 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
90277034 TAATTAAAAT
*
90277044 AAATAAA-ACTAACATTAAAATTAA
1 AAATAAAGACTAAAATTAAAATTAA
*
90277068 AAATAAAGATTAAAATTAAAATTAA
1 AAATAAAGACTAAAATTAAAATTAA
*
90277093 AATTAAAGA
1 AAATAAAGA
90277102 AAATATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 7 0.23
25 23 0.77
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (25 bp):
AAATAAAGACTAAAATTAAAATTAA
Found at i:90277128 original size:6 final size:6
Alignment explanation
Indices: 90277044--90277130 Score: 50
Period size: 6 Copynumber: 14.3 Consensus size: 6
90277034 TAATTAAAAT
* * * * * * *
90277044 AAATAA AACTAA CATTAA AATTAA AAATAA AGATTAA AATTAA AATTAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA A-AATAA AAATAA AAATAA
* * * *
90277093 AATTAA AGA-AA ATATAA AAATGAG AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAAT-AA AAATAA AAATAA AA
90277131 CTAAGAAAAG
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
5 4 0.06
6 52 0.79
7 10 0.15
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (6 bp):
AAATAA
Found at i:90277137 original size:19 final size:20
Alignment explanation
Indices: 90277101--90277138 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
90277091 AAAATTAAAG
*
90277101 AAAATATAAAAATGAGAAAT
1 AAAATATAAAAATAAGAAAT
*
90277121 AAAA-ATAAAACTAAGAAA
1 AAAATATAAAAATAAGAAA
90277139 AGCTTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAATATAAAAATAAGAAAT
Found at i:90278725 original size:12 final size:12
Alignment explanation
Indices: 90278700--90278732 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
90278690 TAAAAGTGCT
90278700 AATGAAACAAGAA
1 AATGAAA-AAGAA
90278713 AATGAAAAAGAA
1 AATGAAAAAGAA
90278725 AA-GAAAAA
1 AATGAAAAA
90278733 AAGAATAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.30
12 7 0.35
13 7 0.35
ACGTcount: A:0.76, C:0.03, G:0.15, T:0.06
Consensus pattern (12 bp):
AATGAAAAAGAA
Found at i:90284956 original size:13 final size:13
Alignment explanation
Indices: 90284938--90284964 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
90284928 CACCATGTTC
90284938 ATTCATCTCAATA
1 ATTCATCTCAATA
90284951 ATTCATCTCAATA
1 ATTCATCTCAATA
90284964 A
1 A
90284965 CATTAGATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTCATCTCAATA
Found at i:90286722 original size:28 final size:28
Alignment explanation
Indices: 90286657--90286810 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
90286647 ATATTAAGTC
* *
90286657 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
90286684 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
90286712 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
90286740 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
90286768 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
90286796 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90286811 GTACAATTTA
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 21 0.17
28 101 0.83
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:90298897 original size:17 final size:17
Alignment explanation
Indices: 90298875--90298910 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
90298865 CGATTGCATG
*
90298875 TTTCTATTGCTATTTAT
1 TTTCTATTACTATTTAT
*
90298892 TTTCTATTACTGTTTAT
1 TTTCTATTACTATTTAT
90298909 TT
1 TT
90298911 CCCTTGAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTCTATTACTATTTAT
Found at i:90299664 original size:23 final size:23
Alignment explanation
Indices: 90299638--90299687 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
90299628 ATTTTTTGAT
90299638 ATTGTTCTTGATTTGT-T-CTGGAA
1 ATTGTT-TTGA-TTGTCTGCTGGAA
90299661 ATTGTTTTGATTGTCTGCTGGAA
1 ATTGTTTTGATTGTCTGCTGGAA
90299684 ATTG
1 ATTG
90299688 AATTTGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.16
22 5 0.20
23 16 0.64
ACGTcount: A:0.18, C:0.08, G:0.24, T:0.50
Consensus pattern (23 bp):
ATTGTTTTGATTGTCTGCTGGAA
Found at i:90301012 original size:48 final size:48
Alignment explanation
Indices: 90300858--90301038 Score: 312
Period size: 47 Copynumber: 3.8 Consensus size: 48
90300848 AAATAATTAC
*
90300858 ATCAATAATTAAAATAAGGAC-TTAATATTTCATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
*
90300905 ATCAATAATTAAAATAAGGACTTTAATATTTTATT-AAATAAGGAATA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
*
90300952 ATCAATAATTAAATTAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
*
90301000 ATCAATATTTAAAATAAGGACTTTAATATTTTATTAAAA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAA
90301039 ATCAAGAAAT
Statistics
Matches: 126, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
47 66 0.52
48 60 0.48
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.36
Consensus pattern (48 bp):
ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
Found at i:90301016 original size:95 final size:94
Alignment explanation
Indices: 90300858--90301037 Score: 324
Period size: 95 Copynumber: 1.9 Consensus size: 94
90300848 AAATAATTAC
90300858 ATCAATAATTAAAATAAGGACTTAATATTTCATTAAAATAAGGACTAATCAATAATTAAAATAAG
1 ATCAATAATTAAAATAAGGACTTAATATTTCATTAAAATAAGGACTAATCAATAATTAAAATAAG
90300923 GACTTTAATATTTTATTAAATAAGGAATA
66 GACTTTAATATTTTATTAAATAAGGAATA
* * *
90300952 ATCAATAATTAAATTAAGGACTTTAATATTTTATTAAAATAAGGACTAATCAATATTTAAAATAA
1 ATCAATAATTAAAATAAGGAC-TTAATATTTCATTAAAATAAGGACTAATCAATAATTAAAATAA
90301017 GGACTTTAATATTTTATTAAA
65 GGACTTTAATATTTTATTAAA
90301038 AATCAAGAAA
Statistics
Matches: 82, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
94 20 0.24
95 62 0.76
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.37
Consensus pattern (94 bp):
ATCAATAATTAAAATAAGGACTTAATATTTCATTAAAATAAGGACTAATCAATAATTAAAATAAG
GACTTTAATATTTTATTAAATAAGGAATA
Found at i:90304943 original size:26 final size:25
Alignment explanation
Indices: 90304897--90304953 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
90304887 TAATTAAATT
* *
90304897 ATTATAAAATATTAAACAAAATCATA
1 ATTATAAAAAATCAAACAAAAT-ATA
90304923 ATTATAATAAAATCAAA-AAAATATA
1 ATTATAA-AAAATCAAACAAAATATA
90304948 A-TATAA
1 ATTATAA
90304954 GATTAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 5 0.18
25 4 0.14
26 12 0.43
27 7 0.25
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (25 bp):
ATTATAAAAAATCAAACAAAATATA
Found at i:90305093 original size:16 final size:18
Alignment explanation
Indices: 90305042--90305103 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
90305032 AAAAAAAAAA
* *
90305042 ATTAAATTATATATTTA-
1 ATTAAATAATATAATTAT
90305059 ATATAAATAATATAATTAT
1 AT-TAAATAATATAATTAT
*
90305078 GTTAAA-AATA-AATTAT
1 ATTAAATAATATAATTAT
90305094 ATTAATATAA
1 ATTAA-ATAA
90305104 AATCTATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
16 10 0.27
17 7 0.19
18 19 0.51
19 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
ATTAAATAATATAATTAT
Found at i:90305188 original size:18 final size:17
Alignment explanation
Indices: 90305160--90305194 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
90305150 TGCTTTAAGA
*
90305160 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
90305177 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
90305195 TAATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:90305384 original size:39 final size:40
Alignment explanation
Indices: 90305341--90305445 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
90305331 TTCCATTATG
90305341 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
90305380 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
90305425 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
90305446 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:90305439 original size:45 final size:44
Alignment explanation
Indices: 90305339--90305448 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
90305329 TTTTCCATTA
90305339 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
90305378 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
90305423 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
90305449 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:90305448 original size:16 final size:16
Alignment explanation
Indices: 90305427--90305464 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
90305417 TTGATTTGCT
*
90305427 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
90305443 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
90305459 AATACA
1 ATTACA
90305465 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:90310457 original size:68 final size:67
Alignment explanation
Indices: 90310370--90310536 Score: 309
Period size: 68 Copynumber: 2.5 Consensus size: 67
90310360 ATTATGTCTA
*
90310370 TTTTTTATTGAATTTTCATTCTTGTATCAACTTAAATTATTTACATATATTTGCATTATGTTTCT
1 TTTTTTATTGAATTTTCATTCTTGTATCAACTTAAATTATTTACATATATGTGCATTATGTTTCT
90310435 ATT
66 -TT
90310438 TTTTTTATTGAATTTTCATTCTTGTATCAACTTAAATTATTTACATATATGTGCATTATGTTTCT
1 TTTTTTATTGAATTTTCATTCTTGTATCAACTTAAATTATTTACATATATGTGCATTATGTTTCT
90310503 TT
66 TT
90310505 TTTTTTATTGAATTTTCATTCTT-TATCAACTT
1 TTTTTTATTGAATTTTCATTCTTGTATCAACTT
90310537 CTTAGATGAA
Statistics
Matches: 98, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
66 9 0.09
67 25 0.26
68 64 0.65
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (67 bp):
TTTTTTATTGAATTTTCATTCTTGTATCAACTTAAATTATTTACATATATGTGCATTATGTTTCT
TT
Found at i:90310478 original size:32 final size:32
Alignment explanation
Indices: 90310374--90310478 Score: 86
Period size: 32 Copynumber: 3.2 Consensus size: 32
90310364 TGTCTATTTT
90310374 TTATTGAATTTTCATTCTTGTATCAACTTAAA
1 TTATTGAATTTTCATTCTTGTATCAACTTAAA
* * * * * ***
90310406 TTATTTACATATATTTGCATT-ATGTTTCTATTTTTT
1 TTA-TT-GA-AT-TTT-CATTCTTGTATCAACTTAAA
90310442 TTATTGAATTTTCATTCTTGTATCAACTTAAA
1 TTATTGAATTTTCATTCTTGTATCAACTTAAA
90310474 TTATT
1 TTATT
90310479 TACATATATG
Statistics
Matches: 51, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
31 4 0.08
32 19 0.37
33 4 0.08
34 2 0.04
35 4 0.08
36 14 0.27
37 4 0.08
ACGTcount: A:0.28, C:0.10, G:0.06, T:0.56
Consensus pattern (32 bp):
TTATTGAATTTTCATTCTTGTATCAACTTAAA
Found at i:90312936 original size:19 final size:19
Alignment explanation
Indices: 90312912--90312952 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
90312902 AAAATAAAAG
90312912 ATACTAACTTCTTAATAAA
1 ATACTAACTTCTTAATAAA
90312931 ATACTAACTTCTTAATAAA
1 ATACTAACTTCTTAATAAA
90312950 ATA
1 ATA
90312953 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.37
Consensus pattern (19 bp):
ATACTAACTTCTTAATAAA
Found at i:90331112 original size:27 final size:27
Alignment explanation
Indices: 90331082--90331249 Score: 228
Period size: 27 Copynumber: 6.2 Consensus size: 27
90331072 TTAGTTTACC
*
90331082 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
90331109 AAATTACTAAAATACCCTTGGCTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
90331136 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
90331163 AAATTACCAAAATACCCCCGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
90331190 AAATTATCAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
90331217 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
90331244 AAATTA
1 AAATTA
90331250 TTGAAATACC
Statistics
Matches: 122, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:90331219 original size:81 final size:81
Alignment explanation
Indices: 90331082--90331330 Score: 277
Period size: 81 Copynumber: 3.1 Consensus size: 81
90331072 TTAGTTTACC
* ** *
90331082 AAATTATCAAAATACCCCTGGTTTGTAAAATTA-CTAAAATACCCTTGGCTTATAAAATTACCAA
1 AAATTATCAAAATACCCCCGGTTTGTAAAATTATC-AAAATACCCTCAGCTTGTAAAATTACCAA
90331146 AATACCCCT-AGTTTGTA
65 AATACCCCTGA-TTTGTA
* * *
90331163 AAATTACCAAAATACCCCCGGTTTGTAAAATTATCAAAATACCCCCAGTTTGTAAAATTACCAAA
1 AAATTATCAAAATACCCCCGGTTTGTAAAATTATCAAAATACCCTCAGCTTGTAAAATTACCAAA
*
90331228 ATACCCCTGATTTGTG
66 ATACCCCTGATTTGTA
** * *** * * *
90331244 AAATTATTGAAATACCCTCGACCTGTAAAATTATTAAAATACTCTCAACTTGTAAAATTACCAAA
1 AAATTATCAAAATACCCCCGGTTTGTAAAATTATCAAAATACCCTCAGCTTGTAAAATTACCAAA
* * *
90331309 GTACCCCCGATTTATA
66 ATACCCCTGATTTGTA
*
90331325 GAATTA
1 AAATTA
90331331 CCATTTTACC
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
81 139 0.99
82 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTATCAAAATACCCCCGGTTTGTAAAATTATCAAAATACCCTCAGCTTGTAAAATTACCAAA
ATACCCCTGATTTGTA
Found at i:90331256 original size:27 final size:27
Alignment explanation
Indices: 90331082--90331333 Score: 206
Period size: 27 Copynumber: 9.3 Consensus size: 27
90331072 TTAGTTTACC
* *
90331082 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * ** *
90331109 AAATTACTAAAATACCCTTGGCTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
90331136 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* *
90331163 AAATTACCAAAATACCCCCGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
90331190 AAATTATCAAAATACCCC-CAGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
90331217 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*** **
90331244 AAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
** * * *
90331271 AAATTATTAAAATA-CTCTCAACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
90331298 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
90331325 GAATTACCA
1 AAATTACCA
90331334 TTTTACCCTC
Statistics
Matches: 182, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.02
27 175 0.96
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:90331345 original size:54 final size:54
Alignment explanation
Indices: 90331287--90331397 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 54
90331277 TTAAAATACT
* * *
90331287 CTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATAGAATTACCATTTTACC
1 CTCAACTTATAAAATTACCAAAGTACCCCCGATTTACAAAATTACCATTTTACC
* *** * *
90331341 CTCAATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACC
1 CTCAACTTATAAAATTACCAAAGTACCCCCGATTTACAAAATTACCATTTTACC
90331395 CTC
1 CTC
90331398 GATTTACAGA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.35
Consensus pattern (54 bp):
CTCAACTTATAAAATTACCAAAGTACCCCCGATTTACAAAATTACCATTTTACC
Found at i:90331382 original size:81 final size:81
Alignment explanation
Indices: 90331297--90331466 Score: 232
Period size: 81 Copynumber: 2.1 Consensus size: 81
90331287 CTCAACTTGT
*
90331297 AAAATTACCAAAGTACCCCCGATTTATAGAATTACCATTTTACCCTCAATTTATAAAATTACCAT
1 AAAATTACCAAAGTACCCCCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCAT
90331362 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
**** * * * ** * *
90331378 AAAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTATAGAATTACCGT
1 AAAATTACCAAAGTACCCCCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCAT
90331443 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
90331459 AAAATTAC
1 AAAATTAC
90331467 TGAAATACCC
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (81 bp):
AAAATTACCAAAGTACCCCCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCAT
TTTACCCTCGATTTAC
Found at i:90331476 original size:27 final size:27
Alignment explanation
Indices: 90331310--90331466 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
90331300 ATTACCAAAG
* * * *
90331310 TACCCCCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
90331337 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
90331364 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
90331391 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
90331418 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
90331445 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
90331467 TGAAATACCC
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:90331488 original size:54 final size:54
Alignment explanation
Indices: 90331380--90331495 Score: 137
Period size: 54 Copynumber: 2.1 Consensus size: 54
90331370 CGATTTACAA
* *** * **
90331380 AATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAAAATTATCGAAATACCCATGATAGATAG
90331434 AATTACCGTTTTACCCTCGATTTACAAAATTA-CTGAAATACCCATG-TAAGATAG
1 AATTACCGTTTTACCCTCGATTTACAAAATTATC-GAAATACCCATGAT-AGATAG
90331488 AATTACCG
1 AATTACCG
90331496 AAATACCCAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 2 0.04
54 51 0.96
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTACAAAATTATCGAAATACCCATGATAGATAG
Found at i:90331490 original size:81 final size:81
Alignment explanation
Indices: 90331297--90331494 Score: 204
Period size: 81 Copynumber: 2.4 Consensus size: 81
90331287 CTCAACTTGT
* **
90331297 AAAATTACC-AAAGTACCCCCGATTTATAGAATTACCATTTTACCCTCAATTTATAAAATTACCA
1 AAAATTACCGAAA-TACCCTCGATAGATAGAATTACCATTTTACCCTCAATTTATAAAATTACCA
90331361 TTTTACCCTCGATTTAC
65 TTTTACCCTCGATTTAC
*** ** * * * ** * *
90331378 AAAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTATAGAATTACCGT
1 AAAATTACCGAAATACCCTCGATAGATAGAATTACCATTTTACCCTCAATTTATAAAATTACCAT
90331443 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
*
90331459 AAAATTACTGAAATACCCAT-G-TAAGATAGAATTACC
1 AAAATTACCGAAATACCC-TCGAT-AGATAGAATTACC
90331495 GAAATACCCA
Statistics
Matches: 95, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
80 1 0.01
81 93 0.98
82 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.35
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTCGATAGATAGAATTACCATTTTACCCTCAATTTATAAAATTACCAT
TTTACCCTCGATTTAC
Found at i:90331491 original size:27 final size:27
Alignment explanation
Indices: 90331461--90331660 Score: 217
Period size: 27 Copynumber: 7.5 Consensus size: 27
90331451 CGATTTACAA
* * *
90331461 AATTACTGAAATACCCATGTAAGATAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
90331488 AATTACCGAAATACCCATATGAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
90331515 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
90331542 AGTTATCG-AATA-CCCTGT-AGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
90331566 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
90331593 AATTACCGAAATACGCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
90331620 AATTACTAAAATACCCCTGTAAGGTGG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
90331647 AATTACCGAGATAC
1 AATTACCGAAATAC
90331661 TTTGTGGAGT
Statistics
Matches: 143, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
24 11 0.08
25 10 0.07
26 10 0.07
27 112 0.78
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:90332378 original size:26 final size:26
Alignment explanation
Indices: 90332327--90332399 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
90332317 ATTCTGTTAA
* * *
90332327 GTGGCTTTGCCACATTATCTATTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
90332353 GTGGCTCTG-CACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
90332379 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
90332400 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
25 10 0.24
26 20 0.49
27 11 0.27
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:90332574 original size:6 final size:6
Alignment explanation
Indices: 90332536--90332618 Score: 55
Period size: 6 Copynumber: 13.3 Consensus size: 6
90332526 TTGTATTCAC
* * * *
90332536 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
90332587 ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
90332619 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
5 4 0.07
6 43 0.72
7 11 0.18
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:90332577 original size:25 final size:25
Alignment explanation
Indices: 90332547--90332604 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
90332537 TTCTGATTTT
* *
90332547 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTCACCTAATACTGATTC
*
90332572 TGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGTCACCTAATACTGATTC
90332597 TGATTCTG
1 TGATTCTG
90332605 ATTCTAGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.45
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTGATTC
Found at i:90334630 original size:27 final size:27
Alignment explanation
Indices: 90334564--90334727 Score: 192
Period size: 27 Copynumber: 6.2 Consensus size: 27
90334554 TTAGTTTACC
*
90334564 AAATTATCAAAATACCCCTGG-TTGT-
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
90334589 AAATTA-C-TAATACCCTTGGCTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
90334614 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
90334641 AAATTACCAAAATACCCCCGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
90334668 AAATTATCAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
90334695 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
90334722 AAATTA
1 AAATTA
90334728 TTGAAATACC
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
23 10 0.08
24 4 0.03
25 12 0.10
26 1 0.01
27 91 0.77
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Done.