Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 278 of 356
Found at i:90929385 original size:50 final size:49
Alignment explanation
Indices: 90929224--90929455 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
90929214 CTGGTACGCA
* *
90929224 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* *
90929273 TAGTATCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* ** * *
90929322 TAGTAGCCTGCACTTAGTACTACACATGTAACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * * * *
90929372 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAATTATCCGGTACACG
*
90929423 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
90929456 TCACAATAGA
Statistics
Matches: 157, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
49 76 0.48
50 42 0.27
51 38 0.24
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:90929398 original size:99 final size:100
Alignment explanation
Indices: 90929211--90929451 Score: 324
Period size: 99 Copynumber: 2.4 Consensus size: 100
90929201 CAGCCAAAGC
* * * * ** *
90929211 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAACCATCCGATACACGTAG
*
90929276 TATCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * *
90929309 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTAACCTAACCATCTGATACACGTA
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC-AACCATCCGATACACGTA
*
90929374 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* *
90929410 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGC
90929452 GACCTCACAA
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 40 0.33
99 42 0.34
100 1 0.01
101 40 0.33
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (100 bp):
TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:90934139 original size:10 final size:9
Alignment explanation
Indices: 90934112--90934170 Score: 64
Period size: 9 Copynumber: 5.9 Consensus size: 9
90934102 GCCAAGCCAC
90934112 TATACTTAT
1 TATACTTAT
90934121 TATACTTAT
1 TATACTTAT
90934130 TATAACTTAT
1 TAT-ACTTAT
90934140 CATATCACATTAT
1 --TAT-AC-TTAT
90934153 TATACTTAT
1 TATACTTAT
90934162 TATAACTTA
1 TAT-ACTTA
90934171 CTTAGCATGC
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
9 19 0.43
10 13 0.30
11 3 0.07
12 5 0.11
13 4 0.09
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (9 bp):
TATACTTAT
Found at i:90935738 original size:22 final size:22
Alignment explanation
Indices: 90935703--90935746 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
90935693 TTTCTAAACC
90935703 TTAATTTTTAATTCTAATTATT
1 TTAATTTTTAATTCTAATTATT
*
90935725 TTAATATTTT-ATTCTATTTATT
1 TTAAT-TTTTAATTCTAATTATT
90935747 CCTATTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TTAATTTTTAATTCTAATTATT
Found at i:90942563 original size:14 final size:15
Alignment explanation
Indices: 90942546--90942586 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
90942536 TGTGACCATG
*
90942546 TACAAGGTATGAT-A
1 TACAAGATATGATGA
90942560 TACAA-ATATGAATGA
1 TACAAGATATG-ATGA
90942575 TACAAGATATGA
1 TACAAGATATGA
90942587 AAATGTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 4 0.17
14 7 0.30
15 7 0.30
16 5 0.22
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (15 bp):
TACAAGATATGATGA
Found at i:90944866 original size:45 final size:46
Alignment explanation
Indices: 90944760--90944876 Score: 130
Period size: 45 Copynumber: 2.6 Consensus size: 46
90944750 TGATATGTGT
* *
90944760 GCTAGTGCAAGACATGTCTGGGACATGCATCGGACATAATATGAGA
1 GCTAGTGCAAGACATGTCTGGGACATGCATCGGACATAAGACGAGA
* * ** *
90944806 GCCAGTGTAAGACATGTCTGGGACATGTGTC-G-CATTGAGACGAGA
1 GCTAGTGCAAGACATGTCTGGGACATGCATCGGACA-TAAGACGAGA
* *
90944851 GCTAGTGGAAGACATGCCTGGGACAT
1 GCTAGTGCAAGACATGTCTGGGACAT
90944877 ACTTCGGCCT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 2 0.03
45 31 0.52
46 27 0.45
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.21
Consensus pattern (46 bp):
GCTAGTGCAAGACATGTCTGGGACATGCATCGGACATAAGACGAGA
Found at i:90947744 original size:14 final size:14
Alignment explanation
Indices: 90947725--90947751 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90947715 GGGTAGTGGT
90947725 GCTAGCAGTAGAGG
1 GCTAGCAGTAGAGG
90947739 GCTAGCAGTAGAG
1 GCTAGCAGTAGAG
90947752 CACCTGCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.41, T:0.15
Consensus pattern (14 bp):
GCTAGCAGTAGAGG
Found at i:90954743 original size:31 final size:30
Alignment explanation
Indices: 90954705--90954780 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 30
90954695 TTTTCTGCAT
90954705 GTTTTTGAATAACATAAAGAATT-A-ACTATG
1 GTTTTTGAATAACAT-AA-AATTAAGACTATG
90954735 AGTTTTTGAATAACATAAAATTAAGGACTATG
1 -GTTTTTGAATAACATAAAATTAA-GACTATG
90954767 GTTTTTGAATAACA
1 GTTTTTGAATAACA
90954781 ACGGACTATG
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
29 4 0.10
30 3 0.07
31 29 0.69
32 6 0.14
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (30 bp):
GTTTTTGAATAACATAAAATTAAGACTATG
Found at i:90955151 original size:14 final size:14
Alignment explanation
Indices: 90955132--90955171 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
90955122 ATATTTTTAA
90955132 TAATAATTTTATAT
1 TAATAATTTTATAT
90955146 TAATAATTTTATAT
1 TAATAATTTTATAT
90955160 TAA-AATTATTAT
1 TAATAATT-TTAT
90955172 TAAATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TAATAATTTTATAT
Found at i:90955174 original size:12 final size:13
Alignment explanation
Indices: 90955132--90955196 Score: 59
Period size: 14 Copynumber: 5.2 Consensus size: 13
90955122 ATATTTTTAA
*
90955132 TAATAATTTTATAT
1 TAATAATTAT-TAT
*
90955146 TAATAATTTTATAT
1 TAATAATTAT-TAT
90955160 TAA-AATTATTAT
1 TAATAATTATTAT
90955172 T-A-AA-TATTAT
1 TAATAATTATTAT
90955182 TAATAATTA-TAT
1 TAATAATTATTAT
90955194 TAA
1 TAA
90955197 GAATGTTATT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
10 7 0.15
11 4 0.09
12 12 0.26
13 7 0.15
14 17 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAATAATTATTAT
Found at i:90955180 original size:13 final size:12
Alignment explanation
Indices: 90955143--90955219 Score: 56
Period size: 12 Copynumber: 6.4 Consensus size: 12
90955133 AATAATTTTA
*
90955143 TATTAATAATTTT
1 TATTAA-AATTAT
90955156 ATATTAAAATTAT
1 -TATTAAAATTAT
90955169 TATT-AAA-TAT
1 TATTAAAATTAT
90955179 TATTAATAATTA-
1 TATTAA-AATTAT
*
90955191 TATTAAGAA-TGT
1 TATTAA-AATTAT
90955203 TATT-AAATTAT
1 TATTAAAATTAT
90955214 ATATTA
1 -TATTA
90955220 TTTTATTAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
10 9 0.17
11 8 0.15
12 22 0.42
13 7 0.13
14 6 0.12
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:90955184 original size:22 final size:23
Alignment explanation
Indices: 90955157--90955219 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
90955147 AATAATTTTA
90955157 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
90955179 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
90955203 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
90955220 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:90955192 original size:34 final size:37
Alignment explanation
Indices: 90955136--90955219 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 37
90955126 TTTTAATAAT
*
90955136 AATTTTATATTAATAATTTTATATTAA-AATTATTATTA
1 AATTATATATTAATAA-TTTATATTAAGAA-TATTATTA
*
90955174 AA-TAT-TATTAATAA-TTATATTAAGAATGTTATTA
1 AATTATATATTAATAATTTATATTAAGAATATTATTA
90955208 AATTATATATTA
1 AATTATATATTA
90955220 TTTTATTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
34 18 0.44
35 5 0.12
36 14 0.34
37 2 0.05
38 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (37 bp):
AATTATATATTAATAATTTATATTAAGAATATTATTA
Found at i:90955332 original size:25 final size:26
Alignment explanation
Indices: 90955284--90955333 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
90955274 TTTTTATTTA
*
90955284 TATTAAAATATATTGAACAATAATCT
1 TATTAAAATATAATGAACAATAATCT
*
90955310 TATTAAAATTTAAT-AACAATAATC
1 TATTAAAATATAATGAACAATAATC
90955334 ATCTATCTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (26 bp):
TATTAAAATATAATGAACAATAATCT
Found at i:90955501 original size:16 final size:16
Alignment explanation
Indices: 90955480--90955534 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
90955470 TGAATTACTG
90955480 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTTC
*
90955496 ATTACAACTCTA-TTC
1 ATTACAGCTCTATTTC
*
90955511 AATTACAGC-CTTATTCC
1 -ATTACAGCTC-TATTTC
90955528 ATTACAG
1 ATTACAG
90955535 TGAACCAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
15 4 0.12
16 27 0.82
17 2 0.06
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTTC
Found at i:90957554 original size:11 final size:11
Alignment explanation
Indices: 90957522--90957564 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
90957512 GCTACATTAA
90957522 TACATTAATA-
1 TACATTAATAT
* *
90957532 TATATTATTAT
1 TACATTAATAT
90957543 TACATTAATAT
1 TACATTAATAT
90957554 TACATTAATAT
1 TACATTAATAT
90957565 ACAGGCACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 8 0.29
11 20 0.71
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (11 bp):
TACATTAATAT
Found at i:90957567 original size:21 final size:20
Alignment explanation
Indices: 90957521--90957567 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
90957511 AGCTACATTA
* *
90957521 ATACATTAATATATATTATT
1 ATACATTAATATACATTAAT
90957541 ATTACATTAATATTACATTAAT
1 A-TACATTAATA-TACATTAAT
90957563 ATACA
1 ATACA
90957568 GGCACATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 14 0.61
22 8 0.35
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45
Consensus pattern (20 bp):
ATACATTAATATACATTAAT
Found at i:90958102 original size:43 final size:43
Alignment explanation
Indices: 90958052--90958206 Score: 220
Period size: 43 Copynumber: 3.6 Consensus size: 43
90958042 AATGGTGCTT
* * *
90958052 GAGGCTCTCGCACGACCAAGGGCCTAGGTTACCAATGGTTCCC
1 GAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCC
* * *
90958095 GAGGCTCTCGTACGACCAAAGGCCTAGGTTGCCGATGGTACAC
1 GAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCC
* *
90958138 GAGGCTCTCGCATGACCAAGGGCCTAGGTTGCCGATGGTGCCC
1 GAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCC
* *
90958181 GATGCTCTGGCACGACCAAGGGCCTA
1 GAGGCTCTCGCACGACCAAGGGCCTA
90958207 AGGTGTCGGA
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 98 1.00
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (43 bp):
GAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCC
Found at i:90965485 original size:27 final size:27
Alignment explanation
Indices: 90965447--90965505 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
90965437 ACGCCTGCTA
90965447 GGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
90965474 GGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
*
90965501 AGCAC
1 GGCAC
90965506 AAAGCCTGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.37, G:0.22, T:0.07
Consensus pattern (27 bp):
GGCACGAAGGCCCGAATACACATCACC
Found at i:90965583 original size:38 final size:38
Alignment explanation
Indices: 90965529--90965634 Score: 158
Period size: 38 Copynumber: 2.8 Consensus size: 38
90965519 CACGAAGGGT
* * *
90965529 CGAATATAATACCAGCACTAGGCCTGCGGGATTTATCC
1 CGAATATAATACCAGCACGAAGCCTGCGGGATTTAACC
*
90965567 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
1 CGAATATAATACCAGCACGAAGCCTGCGGGATTTAACC
**
90965605 CGAATATTTTACCAGCACGAAGCCTGCGGG
1 CGAATATAATACCAGCACGAAGCCTGCGGG
90965635 TCTTTAAGCC
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (38 bp):
CGAATATAATACCAGCACGAAGCCTGCGGGATTTAACC
Found at i:90968946 original size:43 final size:42
Alignment explanation
Indices: 90968876--90969138 Score: 226
Period size: 43 Copynumber: 6.2 Consensus size: 42
90968866 CCAAGGTACT
* * *
90968876 GATGGTGCCCGAGGCTGGCGCATGACCAAGGGCCTAGGTTATC
1 GATGGTGCCCGAGGCT-CCGCACGACCAAGGGCCTAGGTTACC
* * *
90968919 GATGGTGCCCGAAGCTACCGCACGACCAAGGGCTTAGGGTACC
1 GATGGTGCCCGAGGCT-CCGCACGACCAAGGGCCTAGGTTACC
* * * * *
90968962 GATGGTGCCCGAGGCTCTCACACGACCAAGGGCCGAGATTGCT
1 GATGGTGCCCGAGGCTC-CGCACGACCAAGGGCCTAGGTTACC
* ** * *
90969005 GATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGTTGCC
1 GATGGTGCCCGAGGCT-CCGCACGA-CCAAGGGCCTAGGTTACC
* * * * *
90969047 AATGGTG-TCAAGGCTTTCGCACGACCAGGGGCCTAGGTTACC
1 GATGGTGCCCGAGGC-TCCGCACGACCAAGGGCCTAGGTTACC
* *
90969089 GATGGTGCCCTAGGCTCCTGCACGATCAAGGGCCTAGGTTACC
1 GATGGTGCCCGAGGCTCC-GCACGACCAAGGGCCTAGGTTACC
*
90969132 AATGGTG
1 GATGGTG
90969139 TCCAAGGTTA
Statistics
Matches: 174, Mismatches: 38, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
41 16 0.09
42 29 0.17
43 128 0.74
44 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.18
Consensus pattern (42 bp):
GATGGTGCCCGAGGCTCCGCACGACCAAGGGCCTAGGTTACC
Found at i:90969148 original size:19 final size:19
Alignment explanation
Indices: 90969124--90969164 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
90969114 TCAAGGGCCT
90969124 AGGTTACCAATGGTGTCCA
1 AGGTTACCAATGGTGTCCA
* *
90969143 AGGTTATCGATGGTGTCCA
1 AGGTTACCAATGGTGTCCA
90969162 AGG
1 AGG
90969165 CTCCAGCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (19 bp):
AGGTTACCAATGGTGTCCA
Found at i:90970435 original size:43 final size:43
Alignment explanation
Indices: 90970328--90971130 Score: 777
Period size: 43 Copynumber: 18.6 Consensus size: 43
90970318 GGCACCAAGG
* * *
90970328 TGCCGATGGTGCCCGAGGCTCCCACAC-ATCC-AGGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGT
* * * *
90970370 TGTCGATGGTGTCCGAGGCTCCCACACTACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
90970413 TGCCAATGGTGCCTGAGGCTCCCACACGACCAAGGGCCTTGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
90970455 -GCACAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGC-C-GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
90970499 TGCCGATGGTGCCCGAGGCTCCCGCATGACCAATGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
90970542 TACCGATGGTGTCTGAGGCTCCCGCACATCCAAACACCAAGGTACCGATGG-
1 TGCCGATGGTGCCCGAGGCTCCCG--CA--C---GACCAAGG-GCCTA-GGT
* * *
90970593 TGCCAATGGTG-CCGAGGCTCTCGCACGACCAAGGACCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
90970635 TACCGATGGTGCCCGAGGCTCCCGCACAATCAAGGGCCTAAGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
90970678 TGCCGATGGTGCCCGAGGCTCCTGCAAGACTAAGGGCCGAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** * ** *
90970721 TACCGATGGTGTTCGAGGCTCCTGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
*
90970763 TGCCGATGGTG-CCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * * *
90970805 TGTCGATGGGGCCAGACGCTCCCG-ATGATCAAGGGCTTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
90970847 TGTCGATGGTGCCTGAGGCTCCCGCACGATCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
90970890 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGACTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
90970933 TACCGATGGTGCTTGAGGCTCCCGCACGACTAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
90970976 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
90971019 TGCCGATGGTGTCGGAGGCTCCCGCAC-ATCCAAGTACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * *
90971061 TGCCGATAGTGCCCGAGGCTCCTGCACAACCAAGGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
90971104 TACCGATGGTGTCCGAGGCTCCCGCAC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC
90971131 ATCCAAAGCC
Statistics
Matches: 630, Mismatches: 105, Indels: 51
0.80 0.13 0.06
Matches are distributed among these distances:
41 26 0.04
42 136 0.22
43 430 0.68
44 1 0.00
45 4 0.01
46 1 0.00
48 2 0.00
50 16 0.03
51 12 0.02
52 2 0.00
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:90970610 original size:50 final size:52
Alignment explanation
Indices: 90970547--90970647 Score: 127
Period size: 50 Copynumber: 2.0 Consensus size: 52
90970537 TAGGTTACCG
*
90970547 ATGGTGTCTGAGGCTCCCGCAC-ATCCAAACACCAAGG-TACCGATGGTGCCA
1 ATGGTGTCCGAGGCTCCCGCACGA-CCAAACACCAAGGTTACCGATGGTGCCA
* ** *
90970598 ATGGTG-CCGAGGCTCTCGCACGACCAAGGACCTAGGTTACCGATGGTGCC
1 ATGGTGTCCGAGGCTCCCGCACGACCAAACACCAAGGTTACCGATGGTGCC
90970648 CGAGGCTCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
50 23 0.53
51 20 0.47
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (52 bp):
ATGGTGTCCGAGGCTCCCGCACGACCAAACACCAAGGTTACCGATGGTGCCA
Found at i:90970651 original size:179 final size:178
Alignment explanation
Indices: 90970413--90971044 Score: 735
Period size: 179 Copynumber: 3.6 Consensus size: 178
90970403 GGGCCTAGGT
* * ** *
90970413 TGCCAATGGTGCCTGAGGCTCCCACACGACCAAGGGCCTTGGGCACAGATGGTGCCCGAGGCTCC
1 TGCCAATGGTGCC-GAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCC
* *
90970478 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAATGGCCTAGGTT
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTT
90970543 ACCGATGGTGTCTGAGGCTCCCGCACATCCAAACACCAAGGTACCGATGG
130 ACCGATGGTGTCTGAGGCTCCCGCACATCCAAACACC-AGGTACCGATGG
* *
90970593 TGCCAATGGTGCCGAGGCTCTCGCACGACCAAGGACCTAGGTTACCGATGGTGCCCGAGGCTCCC
1 TGCCAATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
* * * * * *
90970658 GCACAATCAAGGGCCTAAGTTGCCGATGGTGCCCGAGGCTCCTGCAAGACTAAGGGCCGAGGTTA
66 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTA
* *
90970723 CCGATGGTGT-TCGAGGCTCCTGCACATCCAAGCACC----A---A-GG
131 CCGATGGTGTCT-GAGGCTCCCGCACATCCAAACACCAGGTACCGATGG
* * ** * * *
90970763 TGCCGATGGTGCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGGGCCAGACGCTCCC
1 TGCCAATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
* * * * * * *
90970828 G-ATGATCAAGGGCTTAGGTTGTCGATGGTGCCTGAGGCTCCCGCACGATCAAGGGCCTAGGTTA
66 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTA
* * * *
90970892 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAAGGACTAGGTTACCGATGG
131 CCGATGGTGTCTGAGGCTCCCGCAC-ATCCAAA-CACCAGG-TACCGATGG
*
90970942 TG-C--T--T---GAGGCTCCCGCACGACTAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
1 TGCCAATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
* *
90970999 GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCGGAGGCTCCCGCA
66 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
90971045 CATCCAAGTA
Statistics
Matches: 384, Mismatches: 54, Indels: 36
0.81 0.11 0.08
Matches are distributed among these distances:
169 77 0.20
170 64 0.17
171 47 0.12
172 38 0.10
174 2 0.01
175 1 0.00
176 1 0.00
178 3 0.01
179 138 0.36
180 13 0.03
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (178 bp):
TGCCAATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTA
CCGATGGTGTCTGAGGCTCCCGCACATCCAAACACCAGGTACCGATGG
Found at i:90970970 original size:298 final size:300
Alignment explanation
Indices: 90970330--90971129 Score: 861
Period size: 298 Copynumber: 2.6 Consensus size: 300
90970320 CACCAAGGTG
* * * * ** *
90970330 CCGATGGTGCCCGAGGCTCCCACAC-ATCCA-GGCACCAAGGTGTCGATGGTGTCCGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACAATCAAGGGC-CTAAGTTACCGATGGTGCCCGAGGCTCCC
* ** * * * * * * ** **
90970393 ACACTACCAAGGGCCTAGGTTGCCAATGGTGCCTGAGGCTCCCACACGA-CCAAGGGCCTTGG-G
65 GCAAGACCAAGGGCCGAGGTTACCGATGGTGTCGGAGGCTCCCGCAC-ATCCAAGCACCAAGGTG
* * *
90970456 CACAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
129 C-C-GATGGTGCCCGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGGGCCAGACGCTCC
* *
90970521 CGCATGACCAATGGCCTAGGTTACCGATGGTGTCTGAGGCTCCCGCACATCCAAACACCAAGGTA
191 CGCATGACCAAGGGCCTAGGTTACCGATGGTGCCTGAGGCTCCCGCACATCCAAACACCAAGGTA
*
90970586 CCGATGGTGCCAATGGTGCCGAGGCTCTCGCACGACCAAGGACCTAGGTTA
256 CCGATGGTGCC------GCCGAGGCTCCCGCACGACCAAGGACCTAGGTTA
* *
90970637 CCGATGGTGCCCGAGGCTCCCGCACAATCAAGGGCCTAAGTTGCCGATGGTGCCCGAGGCTCCTG
1 CCGATGGTGCCCGAGGCTCCCGCACAATCAAGGGCCTAAGTTACCGATGGTGCCCGAGGCTCCCG
* *
90970702 CAAGACTAAGGGCCGAGGTTACCGATGGTGTTC-GAGGCTCCTGCACATCCAAGCACCAAGGTGC
66 CAAGACCAAGGGCCGAGGTTACCGATGGTG-TCGGAGGCTCCCGCACATCCAAGCACCAAGGTGC
*
90970766 CGATGGTG-CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGGGCCAGACGCTCCCG-
130 CGATGGTGCCCGAGGCTC-CGCACGACCAAGGGCCTAGGTTGCCGATGGGGCCAGACGCTCCCGC
* * ** *** *
90970829 ATGATCAAGGGCTTAGGTTGTCGATGGTGCCTGAGGCTCCCGCACGAT-CAAGGGCCTAGGTTAC
194 ATGACCAAGGGCCTAGGTTACCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAACACCAAGG-TAC
90970893 CGATGGTG-C-CCGAGGCTCCCGCACGACCAAAGGA-CTAGGTTA
257 CGATGGTGCCGCCGAGGCTCCCGCACGACC-AAGGACCTAGGTTA
** * *
90970935 CCGATGGTGCTTGAGGCTCCCGCACGA-CTAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACAATC-AAGGGCCTAAGTTACCGATGGTGCCCGAGGCTCCC
* * * *
90970999 GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCGGAGGCTCCCGCACATCCAAGTACCAAGGTGC
65 GCAAGACCAAGGGCCGAGGTTACCGATGGTGTCGGAGGCTCCCGCACATCCAAGCACCAAGGTGC
* * * * * *
90971064 CGATAGTGCCCGAGGCTCCTGCACAACCAAGGGCCTAGTTTACCGATGGTGTCC-GAGGCTCCCG
130 CGATGGTGCCCGAGGCTCC-GCACGACCAAGGGCCTAGGTTGCCGATGG-GGCCAGACGCTCCCG
90971128 CA
193 CA
90971130 CATCCAAAGC
Statistics
Matches: 423, Mismatches: 55, Indels: 37
0.82 0.11 0.07
Matches are distributed among these distances:
297 3 0.01
298 146 0.35
299 48 0.11
300 4 0.01
305 49 0.12
306 62 0.15
307 32 0.08
308 73 0.17
309 6 0.01
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (300 bp):
CCGATGGTGCCCGAGGCTCCCGCACAATCAAGGGCCTAAGTTACCGATGGTGCCCGAGGCTCCCG
CAAGACCAAGGGCCGAGGTTACCGATGGTGTCGGAGGCTCCCGCACATCCAAGCACCAAGGTGCC
GATGGTGCCCGAGGCTCCGCACGACCAAGGGCCTAGGTTGCCGATGGGGCCAGACGCTCCCGCAT
GACCAAGGGCCTAGGTTACCGATGGTGCCTGAGGCTCCCGCACATCCAAACACCAAGGTACCGAT
GGTGCCGCCGAGGCTCCCGCACGACCAAGGACCTAGGTTA
Found at i:90971165 original size:43 final size:42
Alignment explanation
Indices: 90971033--90971294 Score: 170
Period size: 42 Copynumber: 6.2 Consensus size: 42
90971023 GATGGTGTCG
* * * *
90971033 GAGGCTCCCGCACATCCAAGTACCAAGGTGCCGATAG-TGCCC
1 GAGGCTCCCGCACATCAAAGCACCAAGGTGCTGAT-GCTGCTC
* * * ** * * * * *
90971075 GAGGCTCCTGCACAACCAAGGGCCTAGTTTACCGATGGTG-TCC
1 GAGGCTCCCGCACATCAAAGCACCAAG-GTGCTGATGCTGCT-C
* *
90971118 GAGGCTCCCGCACATCCAAAGCCCCAAGGTGCTGATGCTGCTT
1 GAGGCTCCCGCACAT-CAAAGCACCAAGGTGCTGATGCTGCTC
* * * *
90971161 GAGGCTCCCGTACATTCGAGGCACCAAGGTGCCGATGCTGCTC
1 GAGGCTCCCGCACA-TCAAAGCACCAAGGTGCTGATGCTGCTC
** *
90971204 GAGGCTCCTC-CACATCTGAGCAGCAAGGTGCTGATGCTGCTC
1 GAGGCTCC-CGCACATCAAAGCACCAAGGTGCTGATGCTGCTC
** ** * * * *
90971246 GAGGCTCCTACACATCTGAGTACCAAGGTGCCGGTGCTACTC
1 GAGGCTCCCGCACATCAAAGCACCAAGGTGCTGATGCTGCTC
90971288 GAGGCTC
1 GAGGCTC
90971295 TCGTACCACT
Statistics
Matches: 175, Mismatches: 37, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
42 88 0.50
43 76 0.43
44 11 0.06
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (42 bp):
GAGGCTCCCGCACATCAAAGCACCAAGGTGCTGATGCTGCTC
Found at i:90971273 original size:477 final size:471
Alignment explanation
Indices: 90970370--90971252 Score: 1123
Period size: 477 Copynumber: 1.9 Consensus size: 471
90970360 GGCACCAAGG
* * *
90970370 TGTCGATGGTGTCCGAGGCTCCCACACTACCAAGGGCCTAGGTTGCCAATGGTGCCTGAGGCTCC
1 TGTCGATGGTGTCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCAATGGTGCCCGAGGCTCC
* * *
90970435 CACACGACCAAGGGCCTTGGGCACAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
66 CACACGACCAAAGGACTAGGGCACAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * *
90970500 GCCGATGGTGCCCGAGGCTCCCGCATGACCAATGGCCTAGGTTACCGATGGTGTCTGAGGCTCCC
131 ACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCGGAGGCTCCC
* *
90970565 GCACATCCAAACACCAAGGTACCGATGGTGCCAATGGTGCCGAGGCTCTCGCACGACCAAGGACC
196 GCACATCCAAACACCAAGGTACCGATAGTGCC------GCCGAGGCTCTCGCACAACCAAGGACC
* * * * *
90970630 TAGGTTACCGATGGTGCCCGAGGCTCCCGCACAATCAAGGGCCTAAGTTGCCGATGGTGCCCGAG
255 TAGGTTACCGATGGTGCCCGAGGCTCCCGCACAATCAAAGCCCCAAGGTGCCGATGCTGCCCGAG
* * * * * *
90970695 GCTCCTGCAAGACTAAGGGCCGAGGTTACCGATGGTGTTCGAGGCTCCTGCACATCCAAGCACCA
320 GCTCCCGCAAGACTAAGGACCAAGGTTACCGATGCTGCTCGAGGCTCCTCCACATCCAAGCACCA
* *
90970760 AGGTGCCGATGGTGCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGGGCCAGACGCT
385 AGGTGCCGATGCTGCCGAGGCTCTCACACGACCAAGGGCCTAGGTTGTCGATGGGGCCAGACGCT
90970825 CCCGATGATCAAGGGCTTAGGT
450 CCCGATGATCAAGGGCTTAGGT
* * *
90970847 TGTCGATGGTG-CCTGAGGCTCCCGCACGATCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTC
1 TGTCGATGGTGTCC-GAGGCTCCCACACGACCAAGGGCCTAGGTTACCAATGGTGCCCGAGGCTC
* ** * ** *
90970911 CCGCACGACCAAAGGACTAGGTTACCGATGGTGCTTGAGGCTCCCGCACGACTAAGGGCCTAGGT
65 CCACACGACCAAAGGACTAGGGCACAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
90970976 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCGGAGGCTCC
130 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCGGAGGCTCC
** * * *
90971041 CGCACATCCAAGTACCAAGGTGCCGATAGTG-C-CCGAGGCTC-CTGCACAACCAAGGGCCTAGT
195 CGCACATCCAAACACCAAGGTACCGATAGTGCCGCCGAGGCTCTC-GCACAACCAAGGACCTAGG
* * **
90971103 TTACCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAAGCCCCAAGGTGCTGATGCTGCTTGAGGCT
259 TTACCGATGGTGCCCGAGGCTCCCGCACAAT-CAAAGCCCCAAGGTGCCGATGCTGCCCGAGGCT
* * * * * ** *
90971167 CCCG-TACATTCGAGGCACCAAGG-TGCCGATGCTGCTCGAGGCTCCTCCACATCTGAGCAGCAA
323 CCCGCAAGACT-AAGG-ACCAAGGTTACCGATGCTGCTCGAGGCTCCTCCACATCCAAGCACCAA
*
90971230 GGTGCTGATGCTGCTCGAGGCTC
386 GGTGCCGATGCTGC-CGAGGCTC
90971253 CTACACATCT
Statistics
Matches: 347, Mismatches: 53, Indels: 19
0.83 0.13 0.05
Matches are distributed among these distances:
468 6 0.02
469 128 0.37
470 13 0.04
476 3 0.01
477 197 0.57
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (471 bp):
TGTCGATGGTGTCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCAATGGTGCCCGAGGCTCC
CACACGACCAAAGGACTAGGGCACAGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
ACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCGGAGGCTCCC
GCACATCCAAACACCAAGGTACCGATAGTGCCGCCGAGGCTCTCGCACAACCAAGGACCTAGGTT
ACCGATGGTGCCCGAGGCTCCCGCACAATCAAAGCCCCAAGGTGCCGATGCTGCCCGAGGCTCCC
GCAAGACTAAGGACCAAGGTTACCGATGCTGCTCGAGGCTCCTCCACATCCAAGCACCAAGGTGC
CGATGCTGCCGAGGCTCTCACACGACCAAGGGCCTAGGTTGTCGATGGGGCCAGACGCTCCCGAT
GATCAAGGGCTTAGGT
Found at i:90971289 original size:42 final size:42
Alignment explanation
Indices: 90971141--90971294 Score: 186
Period size: 42 Copynumber: 3.6 Consensus size: 42
90971131 ATCCAAAGCC
* * *
90971141 CCAAGGTGCTGATGCTGCTTGAGGCTCCCGTACA-TTC-GAGGCA
1 CCAAGGTGCCGATGCTGCTCGAGGCT-CC-TACACATCTGA-GCA
*
90971184 CCAAGGTGCCGATGCTGCTCGAGGCTCCTCCACATCTGAGCA
1 CCAAGGTGCCGATGCTGCTCGAGGCTCCTACACATCTGAGCA
* * *
90971226 GCAAGGTGCTGATGCTGCTCGAGGCTCCTACACATCTGAGTA
1 CCAAGGTGCCGATGCTGCTCGAGGCTCCTACACATCTGAGCA
* *
90971268 CCAAGGTGCCGGTGCTACTCGAGGCTC
1 CCAAGGTGCCGATGCTGCTCGAGGCTC
90971295 TCGTACCACT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
41 3 0.03
42 68 0.70
43 26 0.27
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (42 bp):
CCAAGGTGCCGATGCTGCTCGAGGCTCCTACACATCTGAGCA
Found at i:90982150 original size:39 final size:40
Alignment explanation
Indices: 90982049--90982240 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
90982039 TTGAATGATG
* * ** *
90982049 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
* *
90982088 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* *
90982129 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* *
90982168 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
90982207 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
90982241 AGCTATATCC
Statistics
Matches: 128, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.27
40 84 0.66
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:90982255 original size:79 final size:78
Alignment explanation
Indices: 90982050--90982266 Score: 226
Period size: 79 Copynumber: 2.7 Consensus size: 78
90982040 TGAATGATGT
* * * *
90982050 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAGCTATATCCGG-TTAAG-TCCGAAGGCATTT
*
90982114 GTACGAGATACTAATT
63 GTACGAGATACTAATA
*
90982130 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
* *
90982193 GTGCGAGTTACT-ATAA
63 GTACGAGATACTAAT-A
* ** *
90982209 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
90982267 TATGTGATTT
Statistics
Matches: 116, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 65 0.56
80 48 0.41
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTA
CGAGATACTAATA
Found at i:90991487 original size:43 final size:43
Alignment explanation
Indices: 90991440--90992151 Score: 469
Period size: 43 Copynumber: 16.5 Consensus size: 43
90991430 CCAAGGTACT
* *
90991440 GATGGTGCCCGAGGCTCCCGCACAACCAAGAGCTTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* * * * * *
90991483 GATGGTGCCCAAGGATCCCGCACATCC-AGGTACCAAGG-TACC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGG-GCCTAGGTTGCC
* ** ** * *
90991525 GATGGTTCTTGAGGCTCCCGCATGATCAAGGGCCTAGGTTACC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* ***
90991568 GATAGTGCCCGAGAGTGCCCGAGGCTCTCGCTTGACCAAGGGCCTAGGTTGCC
1 G--A-T------G-GTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* * * *
90991621 GATGGTGCCTGTAGG-TCCCGCACGACCAAGGGCCTCGGTTGCT
1 GATGGTGCCCG-AGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* * * * * *
90991664 GATGGTGTCCAAGGCTCCGGCACATCTAA-GCCCTAAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCT-AGGTTGCC
* * * *
90991706 GATGGTG-CTGAGGCTCTCACACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* * *
90991748 GGTGGTGCCCGAGGCTCTCGCA-AGACCAAGGGCCTAGGTTACC
1 GATGGTGCCCGAGGCTCCCGCACA-ACCAAGGGCCTAGGTTGCC
* * * * ** * *
90991791 GATCGTGCCTGAGGCTCTCGCACATCCAAGAACCAATG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* * * * *
90991833 GATGGT-ACCGAAGCTCTCGCACAACCAAGGACCTAGGTTGCT
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* ** * * **
90991875 GATGGTGCCCGAGGCTCCCACATGATCAAGGGCCTAAGTTATC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* *
90991918 AATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* * *
90991961 GATGGTGTCCGAGGCTCCCGCACGACCAAGAGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* * * * * * ** * **
90992004 AATGGTG-CCGTGGCTCTCACACATCTAAGCACCAAGG-TGTT
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* * * ** *
90992045 GATGGTGCCCGAGGCTCCAGCATATCCAAGCACCAAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
* *
90992087 -AGTGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGTTTGTC
1 GA-TGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
*
90992130 GATGGTGTCCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCA
90992152 TATCCAAAGC
Statistics
Matches: 516, Mismatches: 126, Indels: 54
0.74 0.18 0.08
Matches are distributed among these distances:
41 49 0.09
42 152 0.29
43 271 0.53
44 6 0.01
45 1 0.00
46 1 0.00
50 1 0.00
51 1 0.00
52 1 0.00
53 33 0.06
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (43 bp):
GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCC
Found at i:90991563 original size:85 final size:86
Alignment explanation
Indices: 90991414--90991577 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 86
90991404 TTTCTTTAGT
* *
90991414 CCGCACATCCGAGGCACCAAGGTACTGATGGTGCCCGAGGCTCCCGCACAACCAAGAGCTTAGGT
1 CCGCACATCCGAGGCACCAAGGTACCGATGGTGCCCGAGGCTCCCGCACAACCAAGAGCCTAGGT
* *
90991479 TGCCGATGGTGCCCAAGGATC
66 TACCGATAGTGCCCAAGGATC
* * ** ** * *
90991500 CCGCACATCC-AGGTACCAAGGTACCGATGGTTCTTGAGGCTCCCGCATGATCAAGGGCCTAGGT
1 CCGCACATCCGAGGCACCAAGGTACCGATGGTGCCCGAGGCTCCCGCACAACCAAGAGCCTAGGT
90991564 TACCGATAGTGCCC
66 TACCGATAGTGCCC
90991578 GAGAGTGCCC
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
85 56 0.85
86 10 0.15
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (86 bp):
CCGCACATCCGAGGCACCAAGGTACCGATGGTGCCCGAGGCTCCCGCACAACCAAGAGCCTAGGT
TACCGATAGTGCCCAAGGATC
Found at i:90991814 original size:127 final size:125
Alignment explanation
Indices: 90991586--90992151 Score: 477
Period size: 127 Copynumber: 4.5 Consensus size: 125
90991576 CCGAGAGTGC
** * *
90991586 CCGAGGCTCTCGCTTGACCAAGGGCCTAGGTTGCCGATGGTGCCTGTAGG-TCCCGCACGACCAA
1 CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG-AGGCTCCCGCAAGACCAA
* * * * * *
90991650 GGGCCTCGGTTGCTGATGGTGTCCAAGGCTCCGGCACATCTAAGCCCTAAGGTGCCGATGGTG
65 GGGCCTAGGTTACCGATGGTG-CCGAGGCTCC-GCACATCCAAGACCTAAGGTGCCGATGGTG
* * * *
90991713 CTGAGGCTCTCACACGACCAAGGGCCTAGGTTGCCGGTGGTGCCCGAGGCTCTCGCAAGACCAAG
1 CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAG
* * *
90991778 GGCCTAGGTTACCGATCGTGCCTGAGGCTCTCGCACATCCAAGAACC-AATGTGCCGATGGTA
66 GGCCTAGGTTACCGATGGTGCC-GAGGCTC-CGCACATCCAAG-ACCTAAGGTGCCGATGGTG
* * * * * * *
90991840 CCGAAGCTCTCGCACAACCAAGGACCTAGGTTGCTGATGGTGCCCGAGGCTCCCACATGATCAAG
1 CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAG
* * * *
90991905 GGCCTAAGTTATCAATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGTTGCCGATGGTG
66 GGCCTAGGTTACCGATGGTG-CCGAGGCT-CCGCAC-ATCCAA-GACCTAAGG-TGCCGATGGTG
* * * * * * * *
90991968 TCCGAGGCTCCCGCACGACCAAGAGCCTAGGTTGCCAATGGTG-CCGTGGCTCTCACACA-TCTA
1 -CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA-AGACCA
** * * *
90992031 AGCACCAAGGTGT--TGATGGTGCCCGAGGCTCCAGCATATCCAAGCACC-AAGGTGCC-AGTGG
64 AGGGCCTAGGT-TACCGATGGTG-CCGAGGCTCC-GCACATCCAAG-ACCTAAGGTGCCGA-TGG
90992092 TG
124 TG
* * * * *
90992094 CCCGAGGCTCCCGCACAACCAAGGGCCTAGTTTGTCGATGGTGTCCGAGGCTCCCGCA
1 -CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
90992152 TATCCAAAGC
Statistics
Matches: 355, Mismatches: 65, Indels: 38
0.78 0.14 0.08
Matches are distributed among these distances:
125 1 0.00
126 55 0.15
127 225 0.63
128 38 0.11
129 36 0.10
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (125 bp):
CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAG
GGCCTAGGTTACCGATGGTGCCGAGGCTCCGCACATCCAAGACCTAAGGTGCCGATGGTG
Found at i:90991891 original size:170 final size:167
Alignment explanation
Indices: 90991582--90992176 Score: 510
Period size: 170 Copynumber: 3.5 Consensus size: 167
90991572 GTGCCCGAGA
* **
90991582 GTGCCCGAGGCTCTCGCTTGACCAAGGGCCTAGGTTGCCGATGGTG-CCTGTAGG-TCCCGCACG
1 GTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTGCCGATGGTGTCC-G-AGGCTCCCGCAC-
** ** * * * * * *
90991645 A-CCAAGGGCCTCGGTTGCTGATGGTGTCC-AAGGCTC-CGGCACATCTAAGC-CCTAAGGTGCC
63 ATCCAAGAACCAAGG-TGCCGATGGT-ACCGAA-GCTCTC-ACACAACCAAGCACC-AAGGTGCT
* *
90991706 GATGGTG-CTGAGGCTCTCACACGACCAAGGGCCTAGGTTGCCGGTG
123 GATGGTGCCCGAGGCTC-CACA-GACCAAGGGCCTAGGTTGCCAGTG
* * * *
90991752 GTGCCCGAGGCTCTCGCAAGACCAAGGGCCTAGGTTACCGATCGTG-CCTGAGGCTCTCGCACAT
1 GTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACAT
* * * *
90991816 CCAAGAACCAATGTGCCGATGGTACCGAAGCTCTCGCACAACCAAGGACCTAGGTTGCTGATGGT
65 CCAAGAACCAAGGTGCCGATGGTACCGAAGCTCTCACACAACCAAGCACCAAGG-TGCTGATGGT
* * ** *
90991881 GCCCGAGGCTCCCACATGATCAAGGGCCTAAGTTATCAATG
129 GCCCGAGGCT-CCACA-GACCAAGGGCCTAGGTTGCCAGTG
*
90991922 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-
1 GTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-AT
* * * * ** * * *
90991986 CCAAGAGCCTAGGTTGCCAATGGTGCCGTGGCTCTCACACATCTAAGCACCAAGGTGTTGATGGT
65 CCAAGAACCAAGG-TGCCGATGGTACCGAAGCTCTCACACAACCAAGCACCAAGGTGCTGATGGT
* ** *
90992051 GCCCGAGGCTCCAGCATATCCAAGCACCAAGG-TGCCAGTG
129 GCCCGAGGCTCCA-CAGA-CCAAGGGCCTAGGTTGCCAGTG
* * *
90992091 GTGCCCGAGGCTCCCGCACA-ACCAAGGGCCTAGTTTGTCGATGGTGTCCGAGGCTCCCGCATAT
1 GTGCCCGAGGCTCCCGCA-AGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAT
* *
90992155 CCAAAGCACCAAGGTACCGATG
65 CC-AAGAACCAAGGTGCCGATG
90992177 CTACTCGAGG
Statistics
Matches: 348, Mismatches: 61, Indels: 33
0.79 0.14 0.07
Matches are distributed among these distances:
168 19 0.05
169 102 0.29
170 191 0.55
171 36 0.10
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (167 bp):
GTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATC
CAAGAACCAAGGTGCCGATGGTACCGAAGCTCTCACACAACCAAGCACCAAGGTGCTGATGGTGC
CCGAGGCTCCACAGACCAAGGGCCTAGGTTGCCAGTG
Found at i:90992269 original size:85 final size:84
Alignment explanation
Indices: 90992162--90992316 Score: 231
Period size: 85 Copynumber: 1.8 Consensus size: 84
90992152 TATCCAAAGC
* *
90992162 ACCAAGGTACCGATGCTACTCGAGGGTCCCACACATCTGAGGCACCAAGGTGCC-GATGCTGCTC
1 ACCAAGGTACCGATGCTACTCGAGGCTCCCACACATCCGA-GCACCAAGGTGCCAG-TGCTGCTC
90992226 AAGGCTCCCCCACATCTAAGT
64 AAGGCTCCCCCACATCTAAGT
* * * *
90992247 ACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCAGTGCTGCTCGA
1 ACCAAGGTACCGATGCTACTCGAGGCTCCCACACATCCGAGCACCAAGGTGCCAGTGCTGCTCAA
90992312 GGCTC
66 GGCTC
90992317 TCGAACCATT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
84 27 0.43
85 36 0.57
ACGTcount: A:0.22, C:0.35, G:0.26, T:0.17
Consensus pattern (84 bp):
ACCAAGGTACCGATGCTACTCGAGGCTCCCACACATCCGAGCACCAAGGTGCCAGTGCTGCTCAA
GGCTCCCCCACATCTAAGT
Found at i:90992298 original size:42 final size:42
Alignment explanation
Indices: 90991801--90992316 Score: 278
Period size: 43 Copynumber: 12.2 Consensus size: 42
90991791 GATCGTGCCT
* * * * *
90991801 GAGGCTCTCGCACATCCAAGAACCAATGTGCCGATGGTAC-C
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC
* * * * * * * *
90991842 GAAGCTCTCGCACAACCAAGGACCTAGGTTGCTGATGGTGCCC
1 GAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGCTGCTC
* * ** * ** * * *
90991885 GAGGCTCCCACATGAT-CAAGGGCCTAAGTTATCAATGGTGCCC
1 GAGGCTCCCGCA-CATCCAAGCACC-AAGGTGCCGATGCTGCTC
** * *
90991928 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-TCC
1 GAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCT-C
* * *
90991971 GAGGCTCCCGCACGA-CCAAG-AGCCTAGGTTGCCAATGGTGC-C
1 GAGGCTCCCGCAC-ATCCAAGCA-CCAAGG-TGCCGATGCTGCTC
* * * * ** * *
90992013 GTGGCTCTCACACATCTAAGCACCAAGGTGTTGATGGTGCCC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC
* * * *
90992055 GAGGCTCCAGCATATCCAAGCACCAAGGTGCC-AGTGGTGCCC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA-TGCTGCTC
* ** * * * *
90992097 GAGGCTCCCGCACAACCAAGGGCCTAGTTTGTCGATGGTG-TCC
1 GAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGATGCTGCT-C
* * *
90992140 GAGGCTCCCGCATATCCAAAGCACCAAGGTACCGATGCTACTC
1 GAGGCTCCCGCACATCC-AAGCACCAAGGTGCCGATGCTGCTC
* * * *
90992183 GAGGGTCCCACACATCTGAGGCACCAAGGTGCCGATGCTGCTC
1 GAGGCTCCCGCACATC-CAAGCACCAAGGTGCCGATGCTGCTC
* * * *
90992226 AAGGCTCCCCCACATCTAAGTACCAAGGTGCCGATGCTGCTC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC
*
90992268 GAGGCTCCCGCACATCCGAGCACCAAGGTGCC-AGTGCTGCTC
1 GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA-TGCTGCTC
90992310 GAGGCTC
1 GAGGCTC
90992317 TCGAACCATT
Statistics
Matches: 372, Mismatches: 82, Indels: 41
0.75 0.17 0.08
Matches are distributed among these distances:
41 35 0.09
42 151 0.41
43 174 0.47
44 12 0.03
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (42 bp):
GAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTC
Found at i:90994827 original size:21 final size:21
Alignment explanation
Indices: 90994787--90994827 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
90994777 AGAAAAGGTG
*
90994787 ACTAGCCCGAGGGCCATTAAA
1 ACTAGCCCGAAGGCCATTAAA
* *
90994808 ACTAGCCCGAATGCCCTTAA
1 ACTAGCCCGAAGGCCATTAA
90994828 TCATATTAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.32, G:0.20, T:0.17
Consensus pattern (21 bp):
ACTAGCCCGAAGGCCATTAAA
Found at i:90999029 original size:58 final size:59
Alignment explanation
Indices: 90998939--90999059 Score: 154
Period size: 58 Copynumber: 2.1 Consensus size: 59
90998929 GGGAGGGACA
* * * *
90998939 GGGACAATTCATTCATTGGTGGGTACCGAACATGCAACGGTATCTGATTTCTACCTTT-
1 GGGACAATTCATTCATTAGTGGGTACCGAACATGCAACAGTATCCGAATTCTACCTTTC
* * * * *
90998997 GGGACGATTCATTCATTATTGGGTACTGAACATGTAATAGTATCCGAATTCTACCTTTC
1 GGGACAATTCATTCATTAGTGGGTACCGAACATGCAACAGTATCCGAATTCTACCTTTC
90999056 GGGA
1 GGGA
90999060 TTAGGGAGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
58 49 0.92
59 4 0.08
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (59 bp):
GGGACAATTCATTCATTAGTGGGTACCGAACATGCAACAGTATCCGAATTCTACCTTTC
Found at i:91003959 original size:190 final size:184
Alignment explanation
Indices: 91003626--91003994 Score: 499
Period size: 190 Copynumber: 2.0 Consensus size: 184
91003616 TAACTGAAAT
* * *
91003626 ATTTTTTTGTTGGCCCAAAAGAAATACAATAAGCTGAATGAAATATGGCATGATGGCCCGGCACG
1 ATTTTTTTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCATGATGGCCCGGCACG
* * *
91003691 GCAGAAAATTGAACAAGTGCCCAGACCACAAACAGTTGGGAGCTCACACCTGCACCACCACGGCC
66 GCAGAAAATTGAACAAGTGCCCAGACCACAAACAGCTGGGAGCTCACACCCGCACCACCACAGCC
* * *
91003756 CCCGTTGTGCCATGTTTCCCAATGGGGCAGCAC-AGCTAAGTGTTTAACTTAGAA
131 CCCGTTCTGCCATGTTTCCCAAGGGGGCAGCACGA-CCAAGTGTTTAACTTAGAA
*
91003810 ATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAGTATGGCATGATGGCATGGCAC
1 ATTTTTT-TGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCATGATGGC----C-C
* * **
91003875 GGCACGGCAGAAAATTGAACGAGTGCCCGGACCATC-AACAGCTGGGAGCTCGTACCCGCACCAC
60 GGCACGGCAGAAAATTGAACAAGTGCCCAGACCA-CAAACAGCTGGGAGCTCACACCCGCACCAC
* * *
91003939 CACAGCCTCCGTTCTGCCATGTTTCCCGAGGGGGCGGCACGACCAAGTGTTTAACT
124 CACAGCCCCCGTTCTGCCATGTTTCCCAAGGGGGCAGCACGACCAAGTGTTTAACT
91003995 AACTCTTTAC
Statistics
Matches: 160, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
184 7 0.04
185 46 0.29
189 1 0.01
190 104 0.65
191 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.20
Consensus pattern (184 bp):
ATTTTTTTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCATGATGGCCCGGCACG
GCAGAAAATTGAACAAGTGCCCAGACCACAAACAGCTGGGAGCTCACACCCGCACCACCACAGCC
CCCGTTCTGCCATGTTTCCCAAGGGGGCAGCACGACCAAGTGTTTAACTTAGAA
Found at i:91007880 original size:163 final size:163
Alignment explanation
Indices: 91007603--91007918 Score: 542
Period size: 163 Copynumber: 1.9 Consensus size: 163
91007593 ATGTCATCGA
*
91007603 GTGATCACGTGATTCGTAACAAGTAATAAATATTTATAATAAAGATCAAACCTAGACTAATTATT
1 GTGATCACGTGATTCGTAACAAGTAATAAATATTTATAATAAAGATCAAACCTAGACTAACTATT
* * *
91007668 ATCATGACGAAAAGGCAAGCGCACCTATCAAACAATTGTATAGTAATGGCAACATCGGGATATCG
66 ATCACGACGAAAAGGCAAGCGCACCTATCAAACAATAGTATAGTAATGGCAACACCGGGATATCG
91007733 TACCCAAGGGAACCAAAAGTACTTGATAAAGAC
131 TACCCAAGGGAACCAAAAGTACTTGATAAAGAC
* *
91007766 GTGATCGCGTGATTCGTAACAAGTAATAAATATTTATAATGAAGATCAAACCTAGACTAACTATT
1 GTGATCACGTGATTCGTAACAAGTAATAAATATTTATAATAAAGATCAAACCTAGACTAACTATT
* * * *
91007831 ATCACGATGAAAAGGCAAGCGCACCTATCGAACAATAGTATAGTAATGGCAAGACCGGGATATTG
66 ATCACGACGAAAAGGCAAGCGCACCTATCAAACAATAGTATAGTAATGGCAACACCGGGATATCG
91007896 TACCCAAGGGAACCAAAAGTACT
131 TACCCAAGGGAACCAAAAGTACT
91007919 AGTAATAACT
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
163 143 1.00
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.23
Consensus pattern (163 bp):
GTGATCACGTGATTCGTAACAAGTAATAAATATTTATAATAAAGATCAAACCTAGACTAACTATT
ATCACGACGAAAAGGCAAGCGCACCTATCAAACAATAGTATAGTAATGGCAACACCGGGATATCG
TACCCAAGGGAACCAAAAGTACTTGATAAAGAC
Found at i:91010886 original size:12 final size:11
Alignment explanation
Indices: 91010851--91010928 Score: 63
Period size: 12 Copynumber: 6.9 Consensus size: 11
91010841 TATGCCATTC
91010851 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
91010864 AAAATTGAAAT
1 AAAATAAAAAT
91010875 GAAAATAAAAAT
1 -AAAATAAAAAT
*
91010887 CAAAAGAAAAAT
1 -AAAATAAAAAT
91010899 -AAAT-AAAAT
1 AAAATAAAAAT
91010908 AAAATAAAGAAT
1 AAAATAAA-AAT
91010920 -AAATAAAAA
1 AAAATAAAAA
91010929 AAGAAATAGG
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
9 5 0.09
10 9 0.17
11 12 0.22
12 23 0.43
13 5 0.09
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:91010895 original size:17 final size:16
Alignment explanation
Indices: 91010861--91010922 Score: 54
Period size: 17 Copynumber: 3.8 Consensus size: 16
91010851 AAAATAAAAT
* *
91010861 AATAAAATTGAAATGAA
1 AATAAAAAT-AAAAGAA
91010878 AATAAAAATCAAAAGAA
1 AATAAAAAT-AAAAGAA
* *
91010895 AA-ATAAATAAAATAA
1 AATAAAAATAAAAGAA
91010910 AATAAAGAATAAA
1 AATAAA-AATAAA
91010923 TAAAAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
15 8 0.22
16 7 0.19
17 22 0.59
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.18
Consensus pattern (16 bp):
AATAAAAATAAAAGAA
Found at i:91010920 original size:21 final size:21
Alignment explanation
Indices: 91010877--91010927 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
91010867 ATTGAAATGA
91010877 AAATAAAAATCAAAAGAAAAAT
1 AAAT-AAAATCAAAAGAAAAAT
*
91010899 AAATAAAAT-AAAATAAAGAAT
1 AAATAAAATCAAAAGAAA-AAT
91010920 AAATAAAA
1 AAATAAAA
91010928 AAAGAAATAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 7 0.26
21 16 0.59
22 4 0.15
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (21 bp):
AAATAAAATCAAAAGAAAAAT
Found at i:91010925 original size:16 final size:15
Alignment explanation
Indices: 91010904--91010933 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
91010894 AAAATAAATA
91010904 AAATAAAATAAAGAAT
1 AAATAAAA-AAAGAAT
91010920 AAATAAAAAAAGAA
1 AAATAAAAAAAGAA
91010934 ATAGGAGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (15 bp):
AAATAAAAAAAGAAT
Found at i:91010929 original size:32 final size:35
Alignment explanation
Indices: 91010852--91010929 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 35
91010842 ATGCCATTCA
*
91010852 AAATAAAATAATAAAATTGAAATGAAAATAAAAATC
1 AAATAAAA-AATAAAATTAAAATGAAAATAAAAATC
91010888 AAA-AGAAAAAT-AAA-TAAAAT-AAAATAAAGAAT-
1 AAATA-AAAAATAAAATTAAAATGAAAATAAA-AATC
91010920 AAATAAAAAA
1 AAATAAAAAA
91010930 AGAAATAGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
32 16 0.42
33 9 0.24
34 3 0.08
35 4 0.11
36 6 0.16
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (35 bp):
AAATAAAAAATAAAATTAAAATGAAAATAAAAATC
Found at i:91010936 original size:33 final size:33
Alignment explanation
Indices: 91010871--91010936 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
91010861 AATAAAATTG
* *
91010871 AAATGAAAATAAAAATCAAAAGAAAAATAAATA
1 AAATGAAAATAAAAATCAAAAAAAAAAGAAATA
91010904 AAAT-AAAATAAAGAAT-AAATAAAAAAAGAAATA
1 AAATGAAAATAAA-AATCAAA-AAAAAAAGAAATA
91010937 GGAGGATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (33 bp):
AAATGAAAATAAAAATCAAAAAAAAAAGAAATA
Found at i:91017605 original size:190 final size:180
Alignment explanation
Indices: 91017278--91017653 Score: 497
Period size: 190 Copynumber: 2.0 Consensus size: 180
91017268 ACTTAGTATT
* *
91017278 TTTAAC-TAAAATTTTTTTCTGTTCGCCCAAAATAAATACAAGAAGCCGAATGAAATATGGCATG
1 TTTAACTTAAAATTTTTTTCTGTTCGCCAAAAACAAATACAAGAAGCCGAATGAAATATGGCATG
* * *
91017342 ATGGCACGGCAGAAAATTGAACAAATGCCTGGACCACCAACAGTTGGGACCTCACACCCGTACCA
66 ATGGCACGGCAGAAAATTGAACAAATGCCCGGACCACCAACAGTTGGGACATCACACCCGCACCA
* * *
91017407 CTATGGCCCCTGTTGTGCCATGTTTC-CTGAGGGGGCGGCACGACCAAGTG
131 CCATGGCCCCCGTTGTGCCATATTTCTC-GAGGGGGCGGCACGACCAAGTG
* *
91017457 TTTAACTTAGAAA-TTTTTTCTGTTGGCCAAAAACAAATACAAGAAGCCGAATGAAGTATGGCAT
1 TTTAACTTA-AAATTTTTTTCTGTTCGCCAAAAACAAATACAAGAAGCCGAATGAAATATGGC--
* * *
91017521 GATGGCATGGCACGGCACGGTAGAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGATCG
63 -AT-G-ATGGCACGG--C---AGAAAATTGAACAAATGCCCGGACCACCAACAGTTGGGACATCA
*
91017586 CACCCGCACCACCATGGCCCCCGTTGTGCCATATTTCTCGAGGGGGCGGCACGACCTAGTG
120 CACCCGCACCACCATGGCCCCCGTTGTGCCATATTTCTCGAGGGGGCGGCACGACCAAGTG
91017647 TTTAACT
1 TTTAACT
91017654 AACTCCTTAC
Statistics
Matches: 170, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
179 6 0.04
180 47 0.28
181 3 0.02
183 2 0.01
184 1 0.01
185 9 0.05
187 1 0.01
190 100 0.59
191 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (180 bp):
TTTAACTTAAAATTTTTTTCTGTTCGCCAAAAACAAATACAAGAAGCCGAATGAAATATGGCATG
ATGGCACGGCAGAAAATTGAACAAATGCCCGGACCACCAACAGTTGGGACATCACACCCGCACCA
CCATGGCCCCCGTTGTGCCATATTTCTCGAGGGGGCGGCACGACCAAGTG
Found at i:91022408 original size:50 final size:49
Alignment explanation
Indices: 91022287--91022473 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
91022277 TGAGGTCGCA
* ** * *
91022287 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTA-CC--AGACTGTAGGTCACG
* **
91022338 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGACT-GT-AGGTCACG
* * * *
91022388 TGTGTAGTATTAAGTGCAGGCTACTAAGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGACTGTAGGTCACG
* *
91022437 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGA
91022474 TAGCTTCGGC
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 39 0.34
50 41 0.36
51 30 0.26
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGACTGTAGGTCACG
Found at i:91029550 original size:29 final size:29
Alignment explanation
Indices: 91029484--91029608 Score: 111
Period size: 29 Copynumber: 4.4 Consensus size: 29
91029474 TACATACATG
* *
91029484 CATATGGCCCAT-TAGGCCCAA-TCTTATT
1 CATATGGCCCATCCA-GCCCAATTCATATT
*
91029512 TATATGGCCCATCC-GACCCAATTCATATT
1 CATATGGCCCATCCAG-CCCAATTCATATT
* **
91029541 CATATAGCCCATCCAGCCCAATTCACGTT
1 CATATGGCCCATCCAGCCCAATTCATATT
91029570 CATATGGCCCAT--AGGCCCAATCTCAT-TT
1 CATATGGCCCATCCA-GCCCAAT-TCATATT
91029598 -ATATGGCCCAT
1 CATATGGCCCAT
91029609 GTGGCCCAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
27 13 0.16
28 25 0.30
29 43 0.52
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATCCAGCCCAATTCATATT
Found at i:91029628 original size:28 final size:27
Alignment explanation
Indices: 91029485--91029625 Score: 88
Period size: 29 Copynumber: 5.0 Consensus size: 27
91029475 ACATACATGC
**
91029485 ATATGGCCCATTAGGCCCAATCTTATTT
1 ATATGGCCCA-TAGGCCCAATCGCATTT
* * *
91029513 ATATGGCCCATCCGACCCAAT-TCATATT
1 ATATGGCCCAT-AGGCCCAATCGCAT-TT
* * * *
91029541 CATATAGCCCATCCA-GCCCAATTCACGTTC
1 -ATATGGCCCAT--AGGCCCAA-TCGCATTT
*
91029571 ATATGGCCCATAGGCCCAATCTCATTT
1 ATATGGCCCATAGGCCCAATCGCATTT
*
91029598 ATATGGCCCATGTGGCCCAAATCGCATT
1 ATATGGCCCAT-AGGCCC-AATCGCATT
91029626 ATACCCATGC
Statistics
Matches: 89, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
27 21 0.24
28 30 0.34
29 33 0.37
30 3 0.03
31 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.28
Consensus pattern (27 bp):
ATATGGCCCATAGGCCCAATCGCATTT
Found at i:91038511 original size:56 final size:56
Alignment explanation
Indices: 91038451--91038570 Score: 177
Period size: 56 Copynumber: 2.1 Consensus size: 56
91038441 CCTAGACAGG
* *
91038451 GTCTTACTCACACACATATATCGGAGGCACATAGCGATACCAACGTATTAAACGTA
1 GTCTTACTCACACACATATATCGAACGCACATAGCGATACCAACGTATTAAACGTA
* ** * *
91038507 GTCTTACTCACACACATATATCGAACTCACATATTGATGCCAACGTATTAAACGTG
1 GTCTTACTCACACACATATATCGAACGCACATAGCGATACCAACGTATTAAACGTA
91038563 GTCTTACT
1 GTCTTACT
91038571 TGCACAGATA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (56 bp):
GTCTTACTCACACACATATATCGAACGCACATAGCGATACCAACGTATTAAACGTA
Found at i:91050546 original size:143 final size:143
Alignment explanation
Indices: 91050338--91050612 Score: 498
Period size: 143 Copynumber: 1.9 Consensus size: 143
91050328 ATTTGGTAAT
*
91050338 AATAATATAAAATAATAATATGTACAAAAAAATACATATATATATATATGCATATAATAAAAGTA
1 AATAATATAAAATAATAATATGTACAAAAAAATACA-ATATATATATAGGCATATAATAAAAGTA
91050403 TGTAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACAT
65 TGTAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACAT
91050468 AAAAAATTTACAAC
130 AAAAAATTTACAAC
*
91050482 AATAATATAAAATAATGATATGTACAAAAAATATAC-ATATATATATAGGCATATAATAAAAGTA
1 AATAATATAAAATAATAATATGTACAAAAAA-ATACAATATATATATAGGCATATAATAAAAGTA
*
91050546 TGTAATAATAATAATATCTACAATAAAAGAAAATATTAGGCAACGTACATAAAAAATATATACAT
65 TGTAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACAT
91050611 AA
130 AA
91050613 TATAAATATA
Statistics
Matches: 127, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
143 93 0.73
144 30 0.24
145 4 0.03
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (143 bp):
AATAATATAAAATAATAATATGTACAAAAAAATACAATATATATATAGGCATATAATAAAAGTAT
GTAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACATA
AAAAATTTACAAC
Found at i:91050611 original size:15 final size:17
Alignment explanation
Indices: 91050591--91050622 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
91050581 TTAGGCAACG
91050591 TACATAA-A-AAATATA
1 TACATAATATAAATATA
91050606 TACATAATATAAATATA
1 TACATAATATAAATATA
91050623 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:91052763 original size:72 final size:72
Alignment explanation
Indices: 91052555--91053636 Score: 949
Period size: 72 Copynumber: 14.4 Consensus size: 72
91052545 GTGATCTAAA
* * *
91052555 GCTCAACTCACCTCTTGCAAAATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC
*
91052620 ATGTGAACC-GAG
63 --GTG-TCCTGAG
* * * *
91052632 GCTCAACTCACCTCTCGCAATATAAGTTCACTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTCAGCG
*
91052697 TGTCTTGAG
64 TGTCCTGAG
** * *
91052706 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
91052771 TCCTGAG
66 TCCTGAG
*
91052778 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCATG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
91052843 TCCCGAG
66 TCCTGAG
* * *
91052850 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAGTGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
91052915 TCCCGAG
66 TCCTGAG
*
91052922 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGATATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
91052987 TCCCGAG
66 TCCTGAG
* * *
91052994 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATAAAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTG-AAAACAGAAATTGAAATTACCTCA
* *
91053059 GCATGTCTTGAG
61 GCGTGTCCTGAG
** * *
91053071 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
91053136 TCCTGAG
66 TCCTGAG
** *
91053143 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACAGAAATTG-AAATTACCTCAG
*
91053208 CGTGTACTGAG
62 CGTGTCCTGAG
* * * * ** *
91053219 GCTTAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAA--AGCAGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTG-AAAACAGAAATTGAAATTACCTCAG
** *
91053282 ATTGAAATTACCTCAACG
62 CGTG----T-CCT-GA-G
* * * * * * * **** * **
91053300 TGCCTTGAGGCTCAACTCAC-C--TCTCGCAATATGA--GTTGATTTTTGACAAACAGAAATTGA
1 -G-C-TCA-ACTCACCTCTCGCAATAT-G-AGT-TGATTTTTGA--AAACAGAAATTGAAAT---
91053360 AATTACCTCAGCGTGTGACCTGAG
54 ---TACCTCAGCGTGT--CCTGAG
* * *
91053384 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAAAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT-GAAAACAGAAATTGAAATTACCTCAG
* *
91053449 CATGTCTTGAG
62 CGTGTCCTGAG
* ** * *
91053460 GCACAACTCATTTCTCGCAATATGTGTTGAATTTTGAAAACA-AAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
91053524 TCCTGAG
66 TCCTGAG
**
91053531 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGTTAACAACAGAAATTGAAAATTACC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTG--AA-AACAGAAATTG-AAATTACC
91053596 TCAGCGTGTCCTGAG
58 TCAGCGTGTCCTGAG
*
91053611 GCTCAACTCACCTCTCGCAATGTGAG
1 GCTCAACTCACCTCTCGCAATATGAG
91053637 CAGAAATTGA
Statistics
Matches: 833, Mismatches: 117, Indels: 107
0.79 0.11 0.10
Matches are distributed among these distances:
71 54 0.06
72 337 0.40
73 10 0.01
74 43 0.05
75 15 0.02
76 110 0.13
77 112 0.13
78 19 0.02
79 9 0.01
80 61 0.07
81 14 0.02
82 5 0.01
83 5 0.01
84 15 0.02
85 14 0.02
86 5 0.01
89 5 0.01
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAG
Found at i:91052835 original size:144 final size:145
Alignment explanation
Indices: 91052555--91054106 Score: 1575
Period size: 144 Copynumber: 10.3 Consensus size: 145
91052545 GTGATCTAAA
* * *
91052555 GCTCAACTCACCTCTTGCAAAATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC
* * *
91052620 ATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTCACTTTTTTGAAAACAGAAATTGA
63 --GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGA
* *
91052684 AAATACCTCAACGTGTCTTGAG
124 AAATACCTCAGCGTGTCCTGAG
** * *
91052706 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
91052771 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAATTACC
66 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACC
* *
91052835 TCAGCATGTCCCGAG
131 TCAGCGTGTCCTGAG
* * *
91052850 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAGTGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
* * *
91052915 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGATATTGAAATTACC
66 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACC
*
91052979 TCAGCGTGTCCCGAG
131 TCAGCGTGTCCTGAG
* * *
91052994 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATAAAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTG-AAAACAGAAATTGAAATTACCTCA
* * ** * *
91053059 GCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAAAAATTGAAA
61 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
*
91053123 TTACCTCAGCGTGTCCTGAG
126 ATACCTCAGCGTGTCCTGAG
** *
91053143 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACAGAAATTG-AAATTACCTCAG
* *
91053208 CGTGTACTGAGGCTTAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
62 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-----TT------T-T---TTGA
* *
91053273 AAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAG
111 AAA-CAGAAATTGAAAATACCTCAGCGTGTCC-TGAG
91053309 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGT
* *
91053374 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAAAAATTGAA
65 GT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTT-GAAAACAGAAATTGAA
* *
91053439 AATACCTCAGCATGTCTTGAG
125 AATACCTCAGCGTGTCCTGAG
* ** * *
91053460 GCACAACTCATTTCTCGCAATATGTGTTGAATTTTGAAAACA-AAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
**
91053524 TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGTTAACAACAGAAATTGAA
66 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTG--AA-AACAGAAATTGAA
91053589 AATTACCTCAGCGTGTCCTGAG
125 AA-TACCTCAGCGTGTCCTGAG
* *
91053611 GCTCAACTCACCTCTCGC-A-AT--G-TGA-----G----CAGAAATTGAAAATACCTCAACGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
* * * *
91053662 TCTTGAGGCTTAACTCACCTCTTGCAATATGAGTTGA-TTTTTGAAAA-ATAAATTGAAAATACC
66 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACC
*
91053725 TCAGCGTGCCCTGAG
131 TCAGCGTGTCCTGAG
* *
91053740 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAATTACCTCAGTGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGT
*
91053805 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGATAGAAATTG
65 GT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAA-ACAGAAATTG
* * *
91053870 AAAATACCTTAACGTGTCTTGAG
123 AAAATACCTCAGCGTGTCCTGAG
* ** *
91053893 GCTCAACTCACCTCCCATAATATGAGTTGATTTTTTGAAACATAAATTAGAACACAAAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-----------A-AA-ACAGAAATTGAA
*
91053958 AATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGA
52 ATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGA
* * *
91054023 AAGACAGAAATTGAAAATACCTTAACGTGTCTTGAG
111 AA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAG
* ** *
91054059 GCTCAACTCACCTCCCATAATATGAGTTGATTTTTTG-AAACATAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATT
91054107 AGAACACAAA
Statistics
Matches: 1220, Mismatches: 106, Indels: 149
0.83 0.07 0.10
Matches are distributed among these distances:
129 36 0.03
130 12 0.01
131 4 0.00
132 2 0.00
133 1 0.00
134 9 0.01
137 2 0.00
138 52 0.04
139 1 0.00
141 1 0.00
144 225 0.18
145 2 0.00
146 72 0.06
147 51 0.04
148 79 0.06
149 160 0.13
150 20 0.02
151 126 0.10
152 14 0.01
153 55 0.05
154 7 0.01
155 1 0.00
161 5 0.00
162 1 0.00
163 17 0.01
164 18 0.01
165 46 0.04
166 201 0.16
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (145 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACC
TCAGCGTGTCCTGAG
Found at i:91053109 original size:149 final size:145
Alignment explanation
Indices: 91052555--91054197 Score: 1532
Period size: 166 Copynumber: 10.9 Consensus size: 145
91052545 GTGATCTAAA
* * * *
91052555 GCTCAACTCACCTCTTGCAAAATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAATTACCTCAGC
* * *
91052620 ATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTCACTTTTTTGAAAACAGAAATTGA
64 --GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGA
* * *
91052684 AAATACCTCAACGTGTCTTGAG
124 AATTACCTCAGCGTGTCCTGAG
** * *
91052706 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
91052770 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
* *
91052835 TCAGCATGTCCCGAG
131 TCAGCGTGTCCTGAG
* * *
91052850 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAATAGAAATTGAAATTACCTCAGTGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
* *
91052914 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGATATTGAAATTACC
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
*
91052979 TCAGCGTGTCCCGAG
131 TCAGCGTGTCCTGAG
* * *
91052994 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATAAAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAAACAGAAATTGAAATTACCTCA
* * ** * *
91053059 GCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAAT
62 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAT
91053124 TACCTCAGCGTGTCCTGAG
127 TACCTCAGCGTGTCCTGAG
** * *
91053143 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTG-AAATTACCTCAG
* *
91053208 CGTGTACTGAGGCTTAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
63 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A------T------T-T---TTGA
*
91053273 AAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAG
111 AAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAG
*
91053309 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
* *
91053374 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAAAAATTGAA
66 GT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT-GAAAACAGAAATTGAA
* * *
91053439 AATACCTCAGCATGTCTTGAG
125 ATTACCTCAGCGTGTCCTGAG
* ** * *
91053460 GCACAACTCATTTCTCGCAATATGTGTTGAATTTTG-AAAACA-AAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
**
91053523 GTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGTTAACAACAGAAATTGA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTG--AA-AACAGAAATTG-
91053588 AAATTACCTCAGCGTGTCCTGAG
123 AAATTACCTCAGCGTGTCCTGAG
* *
91053611 GCTCAACTCACCTCTCGC-A-AT--G-TGA-----G-----CAGAAATTGAAAATACCTCAACGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
* * * * *
91053661 GTCTTGAGGCTTAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAA-ATAAATTGAAAATACC
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
*
91053725 TCAGCGTGCCCTGAG
131 TCAGCGTGTCCTGAG
* * *
91053740 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAATTACCTCAGTGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
*
91053805 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGATAGAAATTG
66 GT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTGAAA-ACAGAAATTG
* * * *
91053870 AAAATACCTTAACGTGTCTTGAG
123 AAATTACCTCAGCGTGTCCTGAG
* ** *
91053893 GCTCAACTCACCTCCCATAATATGAGTTGATTTTTTGAAACATAAATTAGAACACAAAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG--------A--A-AA-ACAGAAATTGAA
*
91053958 AATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGA
53 ATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTGA
* * * *
91054023 AAGACAGAAATTGAAAATACCTTAACGTGTCTTGAG
111 AA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
* ** *
91054059 GCTCAACTCACCTCCCATAATATGAGTTGATTTTTTGAAACATAAATTAGAACACAAAAATTGAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG--------A--A-AA-ACAGAAATTGA-
* ** * *
91054124 AA-TACCTCAGTGTACCCTGAGGCTCAACTCACCTCTCGCAATATAAATTGATTTTTGAAAAACA
52 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACA
*
91054188 TAAATTGAAA
116 GAAATTGAAA
91054198 AATGGAAATC
Statistics
Matches: 1299, Mismatches: 118, Indels: 142
0.83 0.08 0.09
Matches are distributed among these distances:
129 39 0.03
130 8 0.01
131 4 0.00
132 2 0.00
133 1 0.00
134 9 0.01
137 2 0.00
138 52 0.04
139 1 0.00
141 1 0.00
144 225 0.17
145 2 0.00
146 70 0.05
147 53 0.04
148 81 0.06
149 157 0.12
150 16 0.01
151 128 0.10
152 6 0.00
153 53 0.04
154 7 0.01
155 1 0.00
159 18 0.01
160 3 0.00
161 5 0.00
162 2 0.00
163 17 0.01
164 52 0.04
165 44 0.03
166 238 0.18
167 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (145 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
TCAGCGTGTCCTGAG
Found at i:91053669 original size:58 final size:59
Alignment explanation
Indices: 91053578--91053694 Score: 182
Period size: 58 Copynumber: 2.0 Consensus size: 59
91053568 TTGTTAACAA
* *
91053578 CAGAAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAG
1 CAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
91053637 CAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTTAACTCACCTCTTGCAATATGAG
1 CAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
91053695 TTGATTTTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 40 0.75
59 13 0.25
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (59 bp):
CAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
Found at i:91053829 original size:75 final size:70
Alignment explanation
Indices: 91053280--91053940 Score: 501
Period size: 71 Copynumber: 9.1 Consensus size: 70
91053270 TGAAAAGCAG
* **
91053280 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGTGTGCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
91053345 ACAAACAG
65 A-AAA-AT
*
91053353 AAATTGAAATTACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCA--GTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---T
* *
91053418 TTTTAAAAAACAA
60 TTTT-GAAAA-AT
* * ** * *
91053431 AAATTGAAAATACCTCAGCATGT-CTTGAGGCACAACTCATTTCTCGCAATATGTGTTGAATTTT
1 AAATTGAAAATACCTCAG--TGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91053495 GAAAACA-
64 GAAAA-AT
* * **
91053502 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TT
*
91053567 TTTGTTAACAACAG
61 TTTG--AA-AA-AT
* * *
91053581 AAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAG--CA-----
1 AAATTGAAAA-TACCTCAGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91053639 G--AAAT
64 GAAAAAT
** * * *
91053644 ---TGAAAA-TACCTCAACGTGT-CTTGAGGCTTAACTCACCTCTTGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTC-A-GTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91053704 GAAAAAT
64 GAAAAAT
*
91053711 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
91053776 ACAAACAT
65 A-AAA-AT
*
91053784 AAATTGAAATTACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCA--GTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----
*
91053849 TTTTTTGAAAGATAG
59 -TTTTTGAAA-A-AT
* * * **
91053864 AAATTGAAAATACCTTAACGTGT-CTTGAGGCTCAACTCACCTCCCATAATATGAGTTGATTTTT
1 AAATTGAAAATACC-TCA-GTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*
91053928 TGAAACAT
63 TGAAAAAT
91053936 AAATT
1 AAATT
91053941 AGAACACAAA
Statistics
Matches: 488, Mismatches: 52, Indels: 97
0.77 0.08 0.15
Matches are distributed among these distances:
58 34 0.07
59 1 0.00
60 8 0.02
63 1 0.00
64 2 0.00
65 1 0.00
67 4 0.01
69 6 0.01
70 5 0.01
71 96 0.20
72 15 0.03
73 39 0.08
74 10 0.02
75 82 0.17
76 34 0.07
77 2 0.00
78 66 0.14
79 12 0.02
80 68 0.14
81 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (70 bp):
AAATTGAAAATACCTCAGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
AAAAT
Found at i:91054175 original size:86 final size:87
Alignment explanation
Indices: 91054055--91054269 Score: 228
Period size: 86 Copynumber: 2.5 Consensus size: 87
91054045 TAACGTGTCT
* **
91054055 TGAGGCTCAACTCACCTCCCATAATATGAGTTGATTTTTTG-AAACATAAATTAGAACACAA-AA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATT-GAA-A-AAGAA
* * *
91054118 ATTG-ACAATACCTCAGT-GT-A-CCC
63 ATCGTA-AATACCTC-GTCATGAGACC
* *
91054141 TGAGGCTCAACTCACCTCTCGCAATATAAATTGA-TTTTTGAAAAACATAAATTGAAAAATGGAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACATAAATTGAAAAA--GAA
91054205 ATCGTAAATACCTCGTCATGAGACC
63 ATCGTAAATACCTCGTCATGAGACC
*
91054230 TGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
91054270 TTGATGAACA
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
84 2 0.02
85 7 0.06
86 34 0.31
87 25 0.23
88 2 0.02
89 33 0.31
90 5 0.05
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.30
Consensus pattern (87 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAAAGAAATC
GTAAATACCTCGTCATGAGACC
Found at i:91063942 original size:144 final size:143
Alignment explanation
Indices: 91063738--91064012 Score: 507
Period size: 144 Copynumber: 1.9 Consensus size: 143
91063728 ATTTGGTAAT
*
91063738 AATAATATAAAATAATAATATGTACAAAAAAATACATATATATATGCATATAATAAAAGTATGTA
1 AATAATATAAAATAATAATATGTACAAAAAAATACATATATATAGGCATATAATAAAAGTATGTA
91063803 ATAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACATA
66 ATAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACATA
91063868 AAAAATTTACAAC
131 AAAAATTTACAAC
*
91063881 AATAATATAAAATAATGATATGTA-AGAAAAATATACATATATATAGGCATATAATAAAAGTATG
1 AATAATATAAAATAATAATATGTACA-AAAAA-ATACATATATATAGGCATATAATAAAAGTATG
91063945 TAATAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACA
64 TAATAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACA
91064010 TAA
129 TAA
91064013 TATAAATATA
Statistics
Matches: 128, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
142 1 0.01
143 28 0.22
144 99 0.77
ACGTcount: A:0.59, C:0.06, G:0.07, T:0.28
Consensus pattern (143 bp):
AATAATATAAAATAATAATATGTACAAAAAAATACATATATATAGGCATATAATAAAAGTATGTA
ATAATAATAATAATATCTACAATAAAAGAAAATATTAGGAAACGTACATAAAAAATATATACATA
AAAAATTTACAAC
Found at i:91064011 original size:15 final size:17
Alignment explanation
Indices: 91063991--91064022 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
91063981 TTAGGAAACG
91063991 TACATAA-A-AAATATA
1 TACATAATATAAATATA
91064006 TACATAATATAAATATA
1 TACATAATATAAATATA
91064023 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:91066882 original size:65 final size:67
Alignment explanation
Indices: 91066766--91066891 Score: 161
Period size: 65 Copynumber: 1.9 Consensus size: 67
91066756 ACACGGCATT
* *
91066766 AGACACGCCCGTGTGTCTAGGCCATGGTGAAATAGAGCATACATACTGACTTGTCCACATGGCCT
1 AGACACGCCCGTGTGTCTAGGCCATGGTGAAATAGAGCAGACATACTGACTTGGCCACATGGCCT
91066831 CA
66 CA
* * *
91066833 AGACACGCCCGTGTG-CTAGGCCGT-GTGAAAATTAG-GGAGGC-TACTGACTTGGCCACATG
1 AGACACGCCCGTGTGTCTAGGCCATGGTG-AAA-TAGAGCAGACATACTGACTTGGCCACATG
91066892 ACCGATCATG
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
65 20 0.38
66 14 0.27
67 18 0.35
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.21
Consensus pattern (67 bp):
AGACACGCCCGTGTGTCTAGGCCATGGTGAAATAGAGCAGACATACTGACTTGGCCACATGGCCT
CA
Found at i:91067917 original size:24 final size:24
Alignment explanation
Indices: 91067864--91068031 Score: 182
Period size: 25 Copynumber: 7.0 Consensus size: 24
91067854 GCTTTATCAT
*
91067864 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTC
* * *
91067888 AGTAACTAGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTC
*
91067913 ATAACTGGGGCATAAGCCATTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
*
91067938 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
*
91067963 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTC
*
91067986 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTC
*
91068009 ATAACCGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
91068032 GCACTTCCTC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
23 41 0.33
24 31 0.25
25 53 0.42
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:91067993 original size:23 final size:23
Alignment explanation
Indices: 91067885--91068030 Score: 175
Period size: 23 Copynumber: 6.1 Consensus size: 23
91067875 CCTAGCCTCT
* * *
91067885 TTTAGTAACTAGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
91067908 TTTTTATAACTGGGGCATAAGCCA
1 -TTTAATAACTGGGGCATAAGCCC
91067932 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
91067957 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
91067982 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
91068005 TTTGATAACCGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
91068028 TTT
1 TTT
91068031 TGCACTTCCT
Statistics
Matches: 107, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
23 47 0.44
24 18 0.17
25 41 0.38
27 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:91068105 original size:20 final size:20
Alignment explanation
Indices: 91068077--91068127 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
91068067 GCATTTATGA
*
91068077 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
91068097 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
91068117 ACATATCATGT
1 ACATATCATGT
91068128 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:91070215 original size:17 final size:18
Alignment explanation
Indices: 91070186--91070223 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
91070176 TTTTTGGGGG
91070186 GGGTTAGGGTTTTTTTTT
1 GGGTTAGGGTTTTTTTTT
91070204 GGGTTA-GGTTTTTTTTT
1 GGGTTAGGGTTTTTTTTT
91070221 GGG
1 GGG
91070224 GGGCTTAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.05, C:0.00, G:0.37, T:0.58
Consensus pattern (18 bp):
GGGTTAGGGTTTTTTTTT
Found at i:91073096 original size:24 final size:24
Alignment explanation
Indices: 91073043--91073210 Score: 191
Period size: 25 Copynumber: 7.0 Consensus size: 24
91073033 GCTTTATCAT
*
91073043 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTC
* * *
91073067 AGTAACTAGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTC
*
91073092 ATAACTGGGGCATAAGCCATTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
*
91073117 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
*
91073142 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTC
*
91073165 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTC
91073188 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
91073211 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
23 42 0.33
24 31 0.25
25 53 0.42
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:91073172 original size:23 final size:23
Alignment explanation
Indices: 91073064--91073209 Score: 184
Period size: 23 Copynumber: 6.1 Consensus size: 23
91073054 CCTAGCCTCT
* * *
91073064 TTTAGTAACTAGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
91073087 TTTTTATAACTGGGGCATAAGCCA
1 -TTTAATAACTGGGGCATAAGCCC
91073111 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
91073136 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
91073161 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
91073184 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
91073207 TTT
1 TTT
91073210 TGCACTTCCT
Statistics
Matches: 108, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
23 48 0.44
24 18 0.17
25 41 0.38
27 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:91073284 original size:20 final size:20
Alignment explanation
Indices: 91073256--91073306 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
91073246 GCATTTATGA
*
91073256 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
91073276 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
91073296 ACATATCATGT
1 ACATATCATGT
91073307 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:91073371 original size:25 final size:25
Alignment explanation
Indices: 91073343--91073390 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91073333 ATATATAAAC
* * *
91073343 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
91073368 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
91073391 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:91075428 original size:42 final size:40
Alignment explanation
Indices: 91075350--91075430 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
91075340 AGGGTTTCTT
* * ***
91075350 GGTTTTTTTTGGGGGGGGTTAGGGTTTTTTTTTTGGGTTA
1 GGTTTTTTTTGGGGGGGCTTAGGGCTTTTGAATTGGGTTA
91075390 GGTTTTTTTTGGGGGGGCTTAATGGGCTTTTGAATTGGGTT
1 GGTTTTTTTTGGGGGGGCTT-A-GGGCTTTTGAATTGGGTT
91075431 TAATATTTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 19 0.56
41 1 0.03
42 14 0.41
ACGTcount: A:0.07, C:0.02, G:0.40, T:0.51
Consensus pattern (40 bp):
GGTTTTTTTTGGGGGGGCTTAGGGCTTTTGAATTGGGTTA
Found at i:91078271 original size:24 final size:24
Alignment explanation
Indices: 91078218--91078385 Score: 191
Period size: 25 Copynumber: 7.0 Consensus size: 24
91078208 GCTTTATCAT
*
91078218 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTC
* * *
91078242 AGTAACTAGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTC
*
91078267 ATAACTGGGGCATAAGCCATTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
*
91078292 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
*
91078317 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTC
*
91078340 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTC
91078363 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
91078386 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
23 42 0.33
24 31 0.25
25 53 0.42
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:91078347 original size:23 final size:23
Alignment explanation
Indices: 91078239--91078384 Score: 184
Period size: 23 Copynumber: 6.1 Consensus size: 23
91078229 CCTAGCCTCT
* * *
91078239 TTTAGTAACTAGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
91078262 TTTTTATAACTGGGGCATAAGCCA
1 -TTTAATAACTGGGGCATAAGCCC
91078286 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
91078311 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
91078336 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
91078359 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
91078382 TTT
1 TTT
91078385 TGCACTTCCT
Statistics
Matches: 108, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
23 48 0.44
24 18 0.17
25 41 0.38
27 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:91078459 original size:20 final size:20
Alignment explanation
Indices: 91078431--91078481 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
91078421 GCATTTATGA
*
91078431 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
91078451 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
91078471 ACATATCATGT
1 ACATATCATGT
91078482 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:91078546 original size:25 final size:25
Alignment explanation
Indices: 91078518--91078565 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91078508 ATATATAAAC
* * *
91078518 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
91078543 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
91078566 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:91080571 original size:17 final size:18
Alignment explanation
Indices: 91080542--91080575 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
91080532 TTTTGGGGGG
91080542 GGGTTAGGGTTTTTTTTT
1 GGGTTAGGGTTTTTTTTT
91080560 GGGTTA-GGTTTTTTTT
1 GGGTTAGGGTTTTTTTT
91080576 GGGGGGGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.06, C:0.00, G:0.32, T:0.62
Consensus pattern (18 bp):
GGGTTAGGGTTTTTTTTT
Found at i:91082422 original size:64 final size:67
Alignment explanation
Indices: 91082300--91082424 Score: 168
Period size: 64 Copynumber: 1.9 Consensus size: 67
91082290 ACACGGCATT
* *
91082300 AGACACGCCCGTGTGTCTAGGCCATGGTGAAATAGAGCATACATACTGACTTGTCCACATGGCCT
1 AGACACGCCCGTGTGTCTAGGCCATGGTGAAATAGAGCAGACATACTGACTTGGCCACATGGCCT
91082365 CA
66 CA
* * *
91082367 AGACACGCCCGTGTG-CTAGGCCGT-GTGAAATTAG-GGAGGC-TACTGACTTGGCCACATG
1 AGACACGCCCGTGTGTCTAGGCCATGGTGAAA-TAGAGCAGACATACTGACTTGGCCACATG
91082425 ACCGATCATG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
64 17 0.33
65 9 0.17
66 11 0.21
67 15 0.29
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.22
Consensus pattern (67 bp):
AGACACGCCCGTGTGTCTAGGCCATGGTGAAATAGAGCAGACATACTGACTTGGCCACATGGCCT
CA
Found at i:91083453 original size:23 final size:23
Alignment explanation
Indices: 91083394--91083561 Score: 203
Period size: 23 Copynumber: 7.0 Consensus size: 23
91083384 TGCTTTATCA
*
91083394 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
* *
91083418 TAGTAACTAGGGCAAAAGCCCTTT
1 TA-TAACTGGGGCATAAGCCCTTT
*
91083442 TATAACTGGGGCATAAGCCATTT
1 TATAACTGGGGCATAAGCCCTTT
91083465 ATCATAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
*
91083492 CATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
91083515 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
91083538 GATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
91083561 T
1 T
91083562 GCACTTCCTC
Statistics
Matches: 127, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
23 63 0.50
24 12 0.09
25 51 0.40
27 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:91083504 original size:73 final size:71
Alignment explanation
Indices: 91083421--91083559 Score: 215
Period size: 73 Copynumber: 1.9 Consensus size: 71
91083411 CCTCTTTTAG
* *
91083421 TAACTAGGGCAAAAGCCCTTTTATAACTGGGGCATAAGCCATTTATCATAACTGGGGCATAAGCC
1 TAACTAGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC-CTT-TCATAACTGGGGCATAAGCC
91083486 CTTCATCA
64 CTTCATCA
* * *
91083494 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCT
1 TAACTAGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTCATAACTGGGGCATAAGCCCT
91083559 T
66 T
91083560 TTGCACTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
71 22 0.36
72 2 0.03
73 37 0.61
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
TAACTAGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTCATAACTGGGGCATAAGCCCT
TCATCA
Found at i:91083635 original size:20 final size:20
Alignment explanation
Indices: 91083607--91083657 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
91083597 GCATTTATGA
*
91083607 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
91083627 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
91083647 ACATATCATGT
1 ACATATCATGT
91083658 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:91083722 original size:25 final size:25
Alignment explanation
Indices: 91083694--91083741 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91083684 ATATATAAAC
* * *
91083694 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
91083719 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
91083742 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:91084964 original size:27 final size:27
Alignment explanation
Indices: 91084902--91084979 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
91084892 GGGCATATTC
91084902 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
91084929 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
** *
91084956 GTTTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
91084980 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.05
27 39 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:91085050 original size:27 final size:27
Alignment explanation
Indices: 91084998--91085235 Score: 189
Period size: 27 Copynumber: 8.7 Consensus size: 27
91084988 TTCATCCTAC
* * *
91084998 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
91085025 AAGGGTATTTCCGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
91085052 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
* *
91085080 CATGGGTATTTCT-GTAACTTTGTA-AATC-
1 -AAGGGTATTT-TGGTAA-TTT-TACAAACT
* *
91085108 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
91085135 GAGGGTATTTTGGTAATTTCACAAA-T
1 AAGGGTATTTTGGTAATTTTACAAACT
*
91085161 CAAGGGTATTTTGATAATTTTACAAACT
1 -AAGGGTATTTTGGTAATTTTACAAACT
*
91085189 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
91085216 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTGGTAATTTT
91085236 GTAAATTGAG
Statistics
Matches: 168, Mismatches: 34, Indels: 18
0.76 0.15 0.08
Matches are distributed among these distances:
25 2 0.01
26 7 0.04
27 131 0.78
28 8 0.05
29 18 0.11
30 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:91085257 original size:27 final size:27
Alignment explanation
Indices: 91085226--91085357 Score: 192
Period size: 27 Copynumber: 4.9 Consensus size: 27
91085216 AAGGGTATTT
* * *
91085226 TAGTAATTTTGTAAATTGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
* *
91085253 CAGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
*
91085280 TAGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
91085307 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
* *
91085334 TTGTAATTCTGTAAATCGAGGGTA
1 TAGTAATTCTATAAATCGAGGGTA
91085358 CTTTGGTAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (27 bp):
TAGTAATTCTATAAATCGAGGGTAAAA
Found at i:91085259 original size:54 final size:54
Alignment explanation
Indices: 91085201--91085457 Score: 153
Period size: 54 Copynumber: 4.7 Consensus size: 54
91085191 GGGTATTTTG
*
91085201 GTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAACA
1 GTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
* * *** * * * *
91085255 GTAATTCTATAAA-TCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTTTACAAACT-AAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
* * * ** * *****
91085309 GTAATTCTATAAA-TCGAGGGTAAAATT-GTAATTCTGTAAATCGAGGGTACTTTG
1 GTAATTTTACAAACT-AAGGGT-ATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
* * * ** ***
91085363 GTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAA-ACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
* **
91085417 GTATTTTTACAAACTAAGGGTATTTCGGTAATTTTAGTAAA
1 GTAATTTTACAAACTAAGGGTATTTTAGTAATTTT-GTAAA
91085458 CTAAAGTATT
Statistics
Matches: 158, Mismatches: 38, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
53 6 0.04
54 144 0.91
55 8 0.05
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:91085260 original size:81 final size:81
Alignment explanation
Indices: 91085110--91085461 Score: 239
Period size: 81 Copynumber: 4.3 Consensus size: 81
91085100 TGTAAATCAG
* * * * * ****
91085110 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAATCAAGGGT-ATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAG
*
91085174 ATAATTTTACAAACTAG
66 -TAATTTTACAAACTAA
** *
91085191 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAACAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAG
* *
91085256 TAATTCTATAAA-TCAA
66 TAATTTTACAAACT-AA
*** * * * *** * * **
91085272 GGGTAAAATAGTAATTCTATAAA-TCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATT
1 GGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACA
* *
91085336 GTAATTCTGTA-AATC-GA
65 GTAATT-T-TACAAACTAA
* * * * ***
91085353 GGGTACTTTGGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAA-ACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACA
*
91085417 GTATTTTTACAAACTAA
65 GTAATTTTACAAACTAA
* *
91085434 GGGTATTTCGGTAATTTTAGTAAACTAA
1 GGGTATTTTGGTAATTTTA-CAAACTAA
91085462 AGTATTCTAA
Statistics
Matches: 201, Mismatches: 59, Indels: 22
0.71 0.21 0.08
Matches are distributed among these distances:
79 2 0.01
80 6 0.03
81 183 0.91
82 8 0.04
83 2 0.01
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAG
TAATTTTACAAACTAA
Found at i:91085379 original size:27 final size:27
Alignment explanation
Indices: 91085346--91085452 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 27
91085336 GTAATTCTGT
*
91085346 AAATCGAGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
* *
91085373 AAGTCGAAGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
91085400 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
91085427 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
91085453 GTAAACTAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.06
27 65 0.94
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:91085466 original size:27 final size:27
Alignment explanation
Indices: 91085363--91085467 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
91085353 GGGTACTTTG
* *
91085363 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
91085390 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
91085417 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
91085444 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
91085468 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:91088201 original size:31 final size:31
Alignment explanation
Indices: 91088157--91088220 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
91088147 CCTTTTCATA
* * *
91088157 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCAAATATCATAACACTGGGCCGAAGCCT
**
91088188 TTTCAAATATCATATTACTGGGCCGAAGCCT
1 TTTCAAATATCATAACACTGGGCCGAAGCCT
91088219 TT
1 TT
91088221 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATATCATAACACTGGGCCGAAGCCT
Found at i:91088456 original size:25 final size:23
Alignment explanation
Indices: 91088413--91088581 Score: 214
Period size: 25 Copynumber: 7.0 Consensus size: 23
91088403 TGCTTTATCA
*
91088413 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
91088437 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
91088462 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
91088485 ATCATAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
*
91088512 CATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
91088535 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
91088558 GATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
91088581 T
1 T
91088582 GCACTTCTTC
Statistics
Matches: 131, Mismatches: 7, Indels: 15
0.86 0.05 0.10
Matches are distributed among these distances:
23 48 0.37
24 24 0.18
25 58 0.44
27 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:91088466 original size:49 final size:47
Alignment explanation
Indices: 91088413--91088581 Score: 216
Period size: 49 Copynumber: 3.5 Consensus size: 47
91088403 TGCTTTATCA
* *
91088413 TATAACTGGAGGCCT-AGCCTCTTTTAGTAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTA-TAACTGGGGCATAAGCCCTTTT
*
91088462 TATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTTT-T-ATAACTGGGGCATAAGCCCTT-TT
* *
91088512 CATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
*
91088558 GATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
91088582 GCACTTCTTC
Statistics
Matches: 108, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
46 23 0.21
47 1 0.01
48 27 0.25
49 33 0.31
50 24 0.22
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
Found at i:91088543 original size:23 final size:23
Alignment explanation
Indices: 91088435--91088580 Score: 202
Period size: 23 Copynumber: 6.1 Consensus size: 23
91088425 CCTAGCCTCT
* *
91088435 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
91088458 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
91088482 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
91088507 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
91088532 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
91088555 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
91088578 TTT
1 TTT
91088581 TGCACTTCTT
Statistics
Matches: 111, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
23 48 0.43
24 20 0.18
25 42 0.38
27 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:91088655 original size:20 final size:20
Alignment explanation
Indices: 91088627--91088677 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
91088617 GCATTTATGA
*
91088627 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
91088647 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
91088667 ACATATCATGT
1 ACATATCATGT
91088678 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:91089983 original size:27 final size:27
Alignment explanation
Indices: 91089921--91089998 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
91089911 GGGCATATTC
91089921 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
91089948 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
91089975 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
91089999 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:91090266 original size:27 final size:27
Alignment explanation
Indices: 91090044--91090475 Score: 209
Period size: 27 Copynumber: 15.9 Consensus size: 27
91090034 TCTACAAACT
* * *
91090044 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
91090071 AATGGTATTTCTA-TAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* * *
91090100 AAAGGTATTTCTA-TAACTTTGTAAATC
1 AAGGGTATTT-TAGTAATTTTATAAATC
* * * *
91090127 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTATAAATC
* * * * *
91090154 GAGGGTATTTCAGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
*
91090181 AAGGGTATTTT-GATAATTTTACAAA-C
1 AAGGGTATTTTAG-TAATTTTATAAATC
* * *
91090207 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTATAAATC
*
91090234 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTATAAATC
* **** * *
91090262 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*** *
91090289 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*** *
91090316 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
* * * *
91090343 GAGGGTAAAATTT--TAATTCTGTAAATC
1 AAGGGT--ATTTTAGTAATTTTATAAATC
* * * * *
91090370 GAGGGTACTTTGGTAATTTTACAAGTC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
91090397 GAA-GGTATTTCAGTAATTTTACAAATC
1 -AAGGGTATTTTAGTAATTTTATAAATC
* * *
91090424 GAGGGTATTTCAGT-ATTTTACAAA-C
1 AAGGGTATTTTAGTAATTTTATAAATC
**
91090449 TAAGGGTATTTCGGTAATTTTAGTAAA
1 -AAGGGTATTTTAGTAATTTTA-TAAA
91090476 CTAAAGTATT
Statistics
Matches: 330, Mismatches: 58, Indels: 33
0.78 0.14 0.08
Matches are distributed among these distances:
25 5 0.02
26 26 0.08
27 260 0.79
28 20 0.06
29 19 0.06
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:91090484 original size:27 final size:26
Alignment explanation
Indices: 91090401--91090485 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
91090391 CAAGTCGAAG
* *
91090401 GTATTTCAGTAATTTTACAAA-TCGAGG
1 GTATTTCAGT-ATTTTACAAACT-AAGA
*
91090428 GTATTTCAGTATTTTACAAACTAAGG
1 GTATTTCAGTATTTTACAAACTAAGA
* *
91090454 GTATTTCGGTAATTTTAGTAAACTAA-A
1 GTATTTCAGT-ATTTTA-CAAACTAAGA
91090481 GTATT
1 GTATT
91090486 CTAAACATGG
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
26 22 0.43
27 22 0.43
28 7 0.14
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.40
Consensus pattern (26 bp):
GTATTTCAGTATTTTACAAACTAAGA
Found at i:91092229 original size:72 final size:72
Alignment explanation
Indices: 91092112--91092261 Score: 264
Period size: 72 Copynumber: 2.1 Consensus size: 72
91092102 AAAAGTTACC
* * *
91092112 AAAATGATATTTGATAGTGTGGTGACAGTCCTCGACAATCCTCGAGCTTATAGCAGCTTTGATAT
1 AAAATGATATTTGATAGTGTGGTGACAATCCTCAACAATCCTCGAGCTTACAGCAGCTTTGATAT
91092177 CTATAAA
66 CTATAAA
91092184 AAAATGATATTTGATAGTGTGGTGACAATCCTCAACAATCCTCGAGCTTACAGCAGCTTTGATAT
1 AAAATGATATTTGATAGTGTGGTGACAATCCTCAACAATCCTCGAGCTTACAGCAGCTTTGATAT
91092249 CTATAAA
66 CTATAAA
*
91092256 ACAATG
1 AAAATG
91092262 CAAACACACA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (72 bp):
AAAATGATATTTGATAGTGTGGTGACAATCCTCAACAATCCTCGAGCTTACAGCAGCTTTGATAT
CTATAAA
Found at i:91102930 original size:6 final size:6
Alignment explanation
Indices: 91102921--91102962 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
91102911 TTACAACTAC
* *
91102921 TTTTTA TTTTTA TTTTTA -GTTTA TTTTATA ATTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT-TA TTTTTA TTTTTA
91102963 ATCATTTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 4 0.13
6 21 0.70
7 5 0.17
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:91105176 original size:14 final size:13
Alignment explanation
Indices: 91105156--91105187 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
91105146 AATATTTAAC
91105156 TTGTTCTTAATTA
1 TTGTTCTTAATTA
91105169 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
91105183 TTGTT
1 TTGTT
91105188 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:91108592 original size:56 final size:56
Alignment explanation
Indices: 91108532--91108664 Score: 198
Period size: 56 Copynumber: 2.4 Consensus size: 56
91108522 TCCTAGATAG
* *
91108532 GGTCTTACTCACACACATAT-GTCACAGTCACATATTGATGCCAACGTATTAAA-TGT
1 GGTCTTACTCGCACACATATAGTCA-AGTCACATATCGATGCCAACGTATTAAACT-T
* *
91108588 GGTCTTACTCGCACACATATATTGAAGTCACATATCGATGCCAACGTATTAAACTT
1 GGTCTTACTCGCACACATATAGTCAAGTCACATATCGATGCCAACGTATTAAACTT
91108644 GGTCTTACTCGCACACATATA
1 GGTCTTACTCGCACACATATA
91108665 CCGATGCCAT
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
56 68 0.96
57 3 0.04
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATAGTCAAGTCACATATCGATGCCAACGTATTAAACTT
Found at i:91115059 original size:18 final size:18
Alignment explanation
Indices: 91115020--91115056 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
91115010 CAATCATCCC
*
91115020 TCATCCCTCATCCTTCAT
1 TCATCCCTCATCATTCAT
91115038 TCATCCCTCACTCATTCAT
1 TCATCCCTCA-TCATTCAT
91115057 CATTCTCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.19, C:0.43, G:0.00, T:0.38
Consensus pattern (18 bp):
TCATCCCTCATCATTCAT
Found at i:91116707 original size:75 final size:75
Alignment explanation
Indices: 91116584--91116736 Score: 306
Period size: 75 Copynumber: 2.0 Consensus size: 75
91116574 CATCTCCACC
91116584 TTCAATTGTTTATGGAGGCGAGTGACTCATTCAAGATAGCCGGTGTGACTGAAGACGTACTGAGG
1 TTCAATTGTTTATGGAGGCGAGTGACTCATTCAAGATAGCCGGTGTGACTGAAGACGTACTGAGG
91116649 TTGAAGTTTT
66 TTGAAGTTTT
91116659 TTCAATTGTTTATGGAGGCGAGTGACTCATTCAAGATAGCCGGTGTGACTGAAGACGTACTGAGG
1 TTCAATTGTTTATGGAGGCGAGTGACTCATTCAAGATAGCCGGTGTGACTGAAGACGTACTGAGG
91116724 TTGAAGTTTT
66 TTGAAGTTTT
91116734 TTC
1 TTC
91116737 CGTACTCGTT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 78 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.33
Consensus pattern (75 bp):
TTCAATTGTTTATGGAGGCGAGTGACTCATTCAAGATAGCCGGTGTGACTGAAGACGTACTGAGG
TTGAAGTTTT
Found at i:91117818 original size:27 final size:28
Alignment explanation
Indices: 91117744--91117820 Score: 79
Period size: 27 Copynumber: 2.8 Consensus size: 28
91117734 TATCGAGGCA
*
91117744 GTGGCATAGCCACTAATATCA--AAATAC
1 GTGGCAAAGCCACTAATA-CAGTAAATAC
* * *
91117771 GTGGAAAAGCCACCAAAACAGTAAA-AC
1 GTGGCAAAGCCACTAATACAGTAAATAC
*
91117798 GTGGCAAAGCCACTAGTACAGTA
1 GTGGCAAAGCCACTAATACAGTA
91117821 CTTCCTCCGA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 2 0.05
27 35 0.88
28 3 0.08
ACGTcount: A:0.43, C:0.22, G:0.19, T:0.16
Consensus pattern (28 bp):
GTGGCAAAGCCACTAATACAGTAAATAC
Found at i:91123407 original size:40 final size:40
Alignment explanation
Indices: 91123352--91123536 Score: 133
Period size: 39 Copynumber: 4.7 Consensus size: 40
91123342 ATTTGATGTG
*
91123352 TATCCAGGCTTAAAGACCCGCAGGCTAT-ATGCTAGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCATGCTAGAATTA
* * *
91123392 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTAGAATTA
* ** * * * *
91123432 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTAGAATTA
* * ** * * * * * *
91123471 TATCCAGACTT-AAGGTCCGTAGGCTTCGTACTGGTACTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTAGAATTA
* *
91123510 TATCCGGGCTTAAAGTCCCGTAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTT
91123537 TGTGTTGGTG
Statistics
Matches: 126, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 69 0.55
40 57 0.45
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTAGAATTA
Found at i:91123463 original size:39 final size:39
Alignment explanation
Indices: 91123381--91123536 Score: 159
Period size: 39 Copynumber: 3.9 Consensus size: 39
91123371 GCAGGCTATA
* * * **
91123381 TGCTAGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCG
1 TGCTGGAACTATATCCGGACTT-AAGGTCCGCAGGCTTCG
* *
91123421 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
1 TGCTGGAACTATATCCGGACTTAAGGTCCGCAGGCTTCG
* * *
91123460 TGCTGGTACTATATCCAGACTTAAGGTCCGTAGGCTTCG
1 TGCTGGAACTATATCCGGACTTAAGGTCCGCAGGCTTCG
* * * * *
91123499 TACTGGTACTATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TGCTGGAACTATATCCGGACTTAAGGT-CCGCAGGCTT
91123537 TGTGTTGGTG
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 72 0.71
40 29 0.29
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (39 bp):
TGCTGGAACTATATCCGGACTTAAGGTCCGCAGGCTTCG
Found at i:91131618 original size:21 final size:21
Alignment explanation
Indices: 91131594--91131642 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
91131584 GGACAACAAT
**
91131594 ACACGGGAGTGGTAACCTAAC
1 ACACGGGAGCAGTAACCTAAC
*
91131615 ACACGGGTGCAGTAACCTAAC
1 ACACGGGAGCAGTAACCTAAC
91131636 ACACGGG
1 ACACGGG
91131643 CGTGAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.29, T:0.12
Consensus pattern (21 bp):
ACACGGGAGCAGTAACCTAAC
Found at i:91141528 original size:114 final size:113
Alignment explanation
Indices: 91141329--91141555 Score: 409
Period size: 114 Copynumber: 2.0 Consensus size: 113
91141319 TACACTTAAT
*
91141329 CAAACAAGTTAGTTACATAAATGTTCATATAAGCATCAAGCAAGTATAGATGAGCTCATCATACT
1 CAAACAAGTTAGTTACATAAATGTTCATATAAGCATCAAGCAAGCATAGATGAGCTCATCATACT
91141394 ATATTTTTTCAAGACATCATTCATTTCATCTCATATCATGTCAAGTAA
66 ATATTTTTTCAAGACATCATTCATTTCATCTCATATCATGTCAAGTAA
* * *
91141442 CAAACAAGTTAGTTACATAAATGTTCATAATAAGCATCAAGTAAGCATAGATGAGCTTATCGTAC
1 CAAACAAGTTAGTTACATAAATGTTCAT-ATAAGCATCAAGCAAGCATAGATGAGCTCATCATAC
91141507 TATATTTTTTCAAGACATCATTCATTTCATCTCATATCATGTCAAGTAA
65 TATATTTTTTCAAGACATCATTCATTTCATCTCATATCATGTCAAGTAA
91141556 TTTATCTGTT
Statistics
Matches: 109, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
113 28 0.26
114 81 0.74
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (113 bp):
CAAACAAGTTAGTTACATAAATGTTCATATAAGCATCAAGCAAGCATAGATGAGCTCATCATACT
ATATTTTTTCAAGACATCATTCATTTCATCTCATATCATGTCAAGTAA
Found at i:91141797 original size:57 final size:58
Alignment explanation
Indices: 91141703--91141838 Score: 161
Period size: 57 Copynumber: 2.4 Consensus size: 58
91141693 CATATAACAG
* ** *
91141703 GATTACCAGTCCAGGTTAAATCCTTTTTGTACTATATGCTCAGA-AGAGCTCA-ATTAA
1 GATTACCAGTCCAGGCTAAATCCTAATTGTACTATATGCT-AGAGAGAGATCATATTAA
* * *
91141760 GATTGCCAGTCCAGGCTAAATCCTAATTGTAAC-ATATGCTTGAGAGAGATTATATTAA
1 GATTACCAGTCCAGGCTAAATCCTAATTGT-ACTATATGCTAGAGAGAGATCATATTAA
*
91141818 GATTACCAGTCTAGGCTAAAT
1 GATTACCAGTCCAGGCTAAAT
91141839 GTAACACCCC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
56 2 0.03
57 39 0.58
58 26 0.39
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (58 bp):
GATTACCAGTCCAGGCTAAATCCTAATTGTACTATATGCTAGAGAGAGATCATATTAA
Found at i:91143235 original size:30 final size:30
Alignment explanation
Indices: 91143201--91143261 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
91143191 TTAATTTACG
* *
91143201 AGTTTTGGGGCAAAAGTGTAAATATGCAAA
1 AGTTTAGGGGCAAAACTGTAAATATGCAAA
* *
91143231 AGTTTAGGGGCAAAACTGTAATTTTGCAAA
1 AGTTTAGGGGCAAAACTGTAAATATGCAAA
91143261 A
1 A
91143262 ATATGATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
AGTTTAGGGGCAAAACTGTAAATATGCAAA
Found at i:91143735 original size:46 final size:46
Alignment explanation
Indices: 91143685--91143950 Score: 253
Period size: 46 Copynumber: 5.7 Consensus size: 46
91143675 TGGTTGAGCA
91143685 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
91143731 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
91143776 CATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
91143824 TCTGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
91143869 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91143917 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91143951 GTGGCGGGTT
Statistics
Matches: 178, Mismatches: 22, Indels: 40
0.74 0.09 0.17
Matches are distributed among these distances:
42 8 0.04
43 8 0.04
45 5 0.03
46 84 0.47
47 53 0.30
48 5 0.03
50 7 0.04
51 8 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91143802 original size:47 final size:47
Alignment explanation
Indices: 91143731--91143899 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 47
91143721 GATGCGAATG
91143731 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * * * *
91143778 TCCGAACTCGTTGAGTTGACTCCGAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA
* *
91143822 TGTCTGAACTCGTTGAGTTGAGTCCGAGTTTGTGAAATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
91143871 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
91143900 ACTTATGGAT
Statistics
Matches: 99, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 29 0.29
47 58 0.59
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:91143841 original size:93 final size:93
Alignment explanation
Indices: 91143682--91143945 Score: 465
Period size: 93 Copynumber: 2.8 Consensus size: 93
91143672 GGATGGTTGA
91143682 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
91143747 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
91143775 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
91143840 TGAGTCCGAGTTTGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
91143868 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
91143933 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
91143946 ACTTAGTGGC
Statistics
Matches: 161, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 161 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:91146945 original size:15 final size:15
Alignment explanation
Indices: 91146925--91146986 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
91146915 TCTTGGGTTT
91146925 CTTTATTCTGGATTC
1 CTTTATTCTGGATTC
*
91146940 CTTTATTCTGGATTT
1 CTTTATTCTGGATTC
* *
91146955 CTCTA-TCTTGGATTT
1 CTTTATTC-TGGATTC
*
91146970 CTTTATTC-GGTTTC
1 CTTTATTCTGGATTC
91146984 CTT
1 CTT
91146987 GTTATCTTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 9 0.22
15 29 0.73
16 2 0.05
ACGTcount: A:0.11, C:0.19, G:0.13, T:0.56
Consensus pattern (15 bp):
CTTTATTCTGGATTC
Found at i:91148938 original size:30 final size:30
Alignment explanation
Indices: 91148904--91148965 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
91148894 TTTAATTTAC
* *
91148904 AAGTTTTGGGGCAAAAGTGTAAATATGCAA
1 AAGTTTAGGGGCAAAACTGTAAATATGCAA
* *
91148934 AAGTTTAGGGGCAAAACTGTAATTTTGCAA
1 AAGTTTAGGGGCAAAACTGTAAATATGCAA
91148964 AA
1 AA
91148966 ATATGATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.27
Consensus pattern (30 bp):
AAGTTTAGGGGCAAAACTGTAAATATGCAA
Found at i:91149438 original size:46 final size:46
Alignment explanation
Indices: 91149388--91149653 Score: 233
Period size: 46 Copynumber: 5.7 Consensus size: 46
91149378 TGGTTGAGCA
91149388 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
91149434 TCCGAACTCGTTGAGTTGAGTACGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
91149479 CATCCGAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * * *
91149527 TCTGAACCCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
91149572 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
91149620 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91149654 GTGGCGGGTT
Statistics
Matches: 173, Mismatches: 29, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
45 6 0.03
46 86 0.50
47 52 0.30
48 6 0.03
50 7 0.04
51 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91149500 original size:47 final size:47
Alignment explanation
Indices: 91149434--91149602 Score: 179
Period size: 47 Copynumber: 3.6 Consensus size: 47
91149424 GATGCGAATG
91149434 TCCGAACTCGTTGAGTTGAGTAC-GAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGT-CTGAGTTCGTGAAATGTAACTAGGCA
* * * * *
91149481 TCCGAACTCGTTGAGTTGAGTCTAAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGAAATGTAACTAG-GCA
* *
91149525 TGTCTGAACCCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCA
*
91149574 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC
91149603 ACTTATGGAT
Statistics
Matches: 97, Mismatches: 15, Indels: 20
0.73 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 30 0.31
47 55 0.57
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCA
Found at i:91149544 original size:93 final size:92
Alignment explanation
Indices: 91149385--91149648 Score: 438
Period size: 93 Copynumber: 2.8 Consensus size: 92
91149375 GGATGGTTGA
91149385 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
91149450 TGAGTACGAGTTCGTGAAATGTAACTAG
66 TGAGT-CGAGTTCGTGAAATGTAACTAG
** * *
91149478 GCATCCGAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAATGTCTGAACCCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
91149543 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTC-GAGTTCGTGAAATGTAACTAG
* * *
91149571 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
91149636 TGAGTCCGAGTTC
66 TGAGT-CGAGTTC
91149649 ACTTAGTGGC
Statistics
Matches: 158, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
92 1 0.01
93 156 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAAATGTAACTAG
Found at i:91163001 original size:48 final size:49
Alignment explanation
Indices: 91162930--91163099 Score: 222
Period size: 49 Copynumber: 3.5 Consensus size: 49
91162920 CTGGTACGCA
*
91162930 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * *
91162979 TAGTATCCT-CACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* ** * *
91163027 TAGTAGCCTGCACTTAGTACTACACATG-TACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
91163076 TAGTAGCCTGCACTT-G-ACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
91163100 CGTACACAGT
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
47 8 0.07
48 48 0.44
49 52 0.48
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:91167749 original size:10 final size:9
Alignment explanation
Indices: 91167722--91167780 Score: 64
Period size: 9 Copynumber: 5.9 Consensus size: 9
91167712 GCCAAGCCAC
91167722 TATACTTAT
1 TATACTTAT
91167731 TATACTTAT
1 TATACTTAT
91167740 TATAACTTAT
1 TAT-ACTTAT
91167750 CATATCACATTAT
1 --TAT-AC-TTAT
91167763 TATACTTAT
1 TATACTTAT
91167772 TATAACTTA
1 TAT-ACTTA
91167781 CTTAGCATGC
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
9 19 0.43
10 13 0.30
11 3 0.07
12 5 0.11
13 4 0.09
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (9 bp):
TATACTTAT
Done.