Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 279 of 356
Found at i:91169348 original size:22 final size:22
Alignment explanation
Indices: 91169313--91169356 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
91169303 TTTCTAAACC
91169313 TTAATTTTTAATTCTAATTATT
1 TTAATTTTTAATTCTAATTATT
*
91169335 TTAATATTTT-ATTCTATTTATT
1 TTAAT-TTTTAATTCTAATTATT
91169357 CCTATTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TTAATTTTTAATTCTAATTATT
Found at i:91176197 original size:14 final size:15
Alignment explanation
Indices: 91176180--91176220 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
91176170 TGTGACCATG
*
91176180 TACAAGGTATGAT-A
1 TACAAGATATGATGA
91176194 TACAA-ATATGAATGA
1 TACAAGATATG-ATGA
91176209 TACAAGATATGA
1 TACAAGATATGA
91176221 AAATGTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 4 0.17
14 7 0.30
15 7 0.30
16 5 0.22
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (15 bp):
TACAAGATATGATGA
Found at i:91178470 original size:46 final size:46
Alignment explanation
Indices: 91178412--91178526 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 46
91178402 TATGTGTGCT
* *
91178412 AGTGCAAGACATGTCTGGGACATGCATCGGACA-TAATATGAGAGCC
1 AGTGCAAGACATGTCTGGGACATGCATCGG-CATTAAGACGAGAGCC
* ** * *
91178458 AGTGTAAGACATGTCTGGGACATGTGTCGGCATTGAGACGAGAGCT
1 AGTGCAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCC
* *
91178504 AGTGGAAGACATGCCTGGGACAT
1 AGTGCAAGACATGTCTGGGACAT
91178527 ACTTCGGCCT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 2 0.03
46 57 0.97
ACGTcount: A:0.30, C:0.17, G:0.32, T:0.21
Consensus pattern (46 bp):
AGTGCAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCC
Found at i:91181398 original size:14 final size:14
Alignment explanation
Indices: 91181379--91181405 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91181369 GGGTAGTGGT
91181379 GCTAGCAGTAGAGG
1 GCTAGCAGTAGAGG
91181393 GCTAGCAGTAGAG
1 GCTAGCAGTAGAG
91181406 CACCTGCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.41, T:0.15
Consensus pattern (14 bp):
GCTAGCAGTAGAGG
Found at i:91188401 original size:31 final size:30
Alignment explanation
Indices: 91188363--91188438 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 30
91188353 TTTTCTGCAT
91188363 GTTTTTGAATAACATAAAGAATT-A-ACTATG
1 GTTTTTGAATAACAT-AA-AATTAAGACTATG
91188393 AGTTTTTGAATAACATAAAATTAAGGACTATG
1 -GTTTTTGAATAACATAAAATTAA-GACTATG
91188425 GTTTTTGAATAACA
1 GTTTTTGAATAACA
91188439 ACGGACTATG
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
29 4 0.10
30 3 0.07
31 29 0.69
32 6 0.14
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (30 bp):
GTTTTTGAATAACATAAAATTAAGACTATG
Found at i:91188810 original size:14 final size:14
Alignment explanation
Indices: 91188791--91188830 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
91188781 ATATTTTTAA
91188791 TAATAATTTTATAT
1 TAATAATTTTATAT
91188805 TAATAATTTTATAT
1 TAATAATTTTATAT
91188819 TAA-AATTATTAT
1 TAATAATT-TTAT
91188831 TAAATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TAATAATTTTATAT
Found at i:91188833 original size:12 final size:13
Alignment explanation
Indices: 91188791--91188855 Score: 59
Period size: 14 Copynumber: 5.2 Consensus size: 13
91188781 ATATTTTTAA
*
91188791 TAATAATTTTATAT
1 TAATAATTAT-TAT
*
91188805 TAATAATTTTATAT
1 TAATAATTAT-TAT
91188819 TAA-AATTATTAT
1 TAATAATTATTAT
91188831 T-A-AA-TATTAT
1 TAATAATTATTAT
91188841 TAATAATTA-TAT
1 TAATAATTATTAT
91188853 TAA
1 TAA
91188856 GAATGTTATT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
10 7 0.15
11 4 0.09
12 12 0.26
13 7 0.15
14 17 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAATAATTATTAT
Found at i:91188839 original size:13 final size:12
Alignment explanation
Indices: 91188802--91188878 Score: 56
Period size: 12 Copynumber: 6.4 Consensus size: 12
91188792 AATAATTTTA
*
91188802 TATTAATAATTTT
1 TATTAA-AATTAT
91188815 ATATTAAAATTAT
1 -TATTAAAATTAT
91188828 TATT-AAA-TAT
1 TATTAAAATTAT
91188838 TATTAATAATTA-
1 TATTAA-AATTAT
*
91188850 TATTAAGAA-TGT
1 TATTAA-AATTAT
91188862 TATT-AAATTAT
1 TATTAAAATTAT
91188873 ATATTA
1 -TATTA
91188879 TTTTATTAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
10 9 0.17
11 8 0.15
12 22 0.42
13 7 0.13
14 6 0.12
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:91188843 original size:22 final size:23
Alignment explanation
Indices: 91188816--91188878 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
91188806 AATAATTTTA
91188816 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
91188838 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
91188862 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
91188879 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:91188851 original size:34 final size:37
Alignment explanation
Indices: 91188795--91188878 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 37
91188785 TTTTAATAAT
*
91188795 AATTTTATATTAATAATTTTATATTAA-AATTATTATTA
1 AATTATATATTAATAA-TTTATATTAAGAA-TATTATTA
*
91188833 AA-TAT-TATTAATAA-TTATATTAAGAATGTTATTA
1 AATTATATATTAATAATTTATATTAAGAATATTATTA
91188867 AATTATATATTA
1 AATTATATATTA
91188879 TTTTATTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
34 18 0.44
35 5 0.12
36 14 0.34
37 2 0.05
38 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (37 bp):
AATTATATATTAATAATTTATATTAAGAATATTATTA
Found at i:91188971 original size:25 final size:25
Alignment explanation
Indices: 91188943--91188991 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
91188933 TTTTTATTTA
*
91188943 TATT-AAATATATTGAACAATAATCT
1 TATTAAAATATAAT-AACAATAATCT
*
91188968 TATTAAAATTTAATAACAATAATC
1 TATTAAAATATAATAACAATAATC
91188992 ATCTATCTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (25 bp):
TATTAAAATATAATAACAATAATCT
Found at i:91189159 original size:16 final size:16
Alignment explanation
Indices: 91189138--91189192 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
91189128 TGAATTACTG
91189138 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTTC
*
91189154 ATTACAACTCTA-TTC
1 ATTACAGCTCTATTTC
*
91189169 AATTACAGC-CTTATTCC
1 -ATTACAGCTC-TATTTC
91189186 ATTACAG
1 ATTACAG
91189193 TGAACCAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
15 4 0.12
16 27 0.82
17 2 0.06
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTTC
Found at i:91191207 original size:11 final size:11
Alignment explanation
Indices: 91191175--91191217 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
91191165 GCTACATTAA
91191175 TACATTAATA-
1 TACATTAATAT
* *
91191185 TATATTATTAT
1 TACATTAATAT
91191196 TACATTAATAT
1 TACATTAATAT
91191207 TACATTAATAT
1 TACATTAATAT
91191218 ACAGGCACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 8 0.29
11 20 0.71
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (11 bp):
TACATTAATAT
Found at i:91191220 original size:21 final size:20
Alignment explanation
Indices: 91191174--91191220 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
91191164 AGCTACATTA
* *
91191174 ATACATTAATATATATTATT
1 ATACATTAATATACATTAAT
91191194 ATTACATTAATATTACATTAAT
1 A-TACATTAATA-TACATTAAT
91191216 ATACA
1 ATACA
91191221 GGCACATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 14 0.61
22 8 0.35
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45
Consensus pattern (20 bp):
ATACATTAATATACATTAAT
Found at i:91191810 original size:41 final size:42
Alignment explanation
Indices: 91191696--91191847 Score: 147
Period size: 41 Copynumber: 3.7 Consensus size: 42
91191686 CAATGGTCTT
* * *
91191696 GAGGCTCTCGCACGACCAA-GGCCTAGGTTACCAAT-GTTC-C
1 GAGGCTCTCGCACGACCAAGGGCCTAGG-TGCCGATGGTACAC
*
91191736 GAGGC-CTCGTACGACCAA--GCCTAGGTTGCCGATGGTACAC
1 GAGGCTCTCGCACGACCAAGGGCCTAGG-TGCCGATGGTACAC
* * *
91191776 GAGGCTCTCGCATGA-CAAGGGCCTAGGTGCCGATGGTGCCC
1 GAGGCTCTCGCACGACCAAGGGCCTAGGTGCCGATGGTACAC
* *
91191817 GATGCTCTGGCACGACCAAGGGCCTAAGGTG
1 GAGGCTCTCGCACGACCAAGGGCCT-AGGTG
91191848 TCGGAGGATC
Statistics
Matches: 94, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
38 13 0.14
39 15 0.16
40 14 0.15
41 31 0.33
42 16 0.17
43 5 0.05
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.18
Consensus pattern (42 bp):
GAGGCTCTCGCACGACCAAGGGCCTAGGTGCCGATGGTACAC
Found at i:91212316 original size:18 final size:17
Alignment explanation
Indices: 91212136--91212655 Score: 252
Period size: 17 Copynumber: 29.8 Consensus size: 17
91212126 GAAAGTTTTT
* *
91212136 TTTTTAAAACAAGAGAA
1 TTTTTAAAACACGAAAA
*
91212153 TTTTT-AAACACGGAAA
1 TTTTTAAAACACGAAAA
**
91212169 TTTCAAAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
91212186 TTTTTAAAACACGACAT
1 TTTTTAAAACACGAAAA
* *
91212203 TTTTTGAAACACGAGAA
1 TTTTTAAAACACGAAAA
* * *
91212220 TTTTTAAAACAAGACAT
1 TTTTTAAAACACGAAAA
* **
91212237 TTTTTGAAACAC-AATT
1 TTTTTAAAACACGAAAA
**
91212253 TTTTTCTTAA-A--AAAA
1 TTTTT-AAAACACGAAAA
* *
91212268 --TTTAAAATACGAGAA
1 TTTTTAAAACACGAAAA
91212283 TTTTTAAAACACGAAAA
1 TTTTTAAAACACGAAAA
*
91212300 TTTTTAAAACACGGAAA
1 TTTTTAAAACACGAAAA
* *
91212317 TTTTTGAAACACGGAAAT
1 TTTTTAAAACAC-GAAAA
***
91212335 TTTTTAGAAA-ACGATTT
1 TTTTTA-AAACACGAAAA
* *
91212352 TTTTTAAAATCACCG-GAG
1 TTTTTAAAA-CA-CGAAAA
91212370 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* *
91212388 TCTTTGAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
*
91212405 TTTTTGAAAACACGAAGA
1 TTTTT-AAAACACGAAAA
*
91212423 TTTTTTAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
91212440 TTTTTTGAAAATACGAAGATT
1 -TTTTT-AAAACACGAA-A-A
** *
91212461 TTTTTTTAACACGGAAA
1 TTTTTAAAACACGAAAA
* ***
91212478 TTTTTGAAACACAGTCATTT
1 TTTTTAAAACAC-G--AAAA
91212498 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* **
91212516 TTTTTGAAAGACA-TAATT
1 TTTTT-AAA-ACACGAAAA
* *
91212534 TTTTTGAAAATACGGAAA
1 TTTTT-AAAACACGAAAA
*
91212552 TTTATAAAACACGAAAA
1 TTTTTAAAACACGAAAA
*
91212569 TTTTTTCTGAAAACAAGAAAA
1 --TTTT-T-AAAACACGAAAA
* * *
91212590 TTTTTGAAACACTAGAA
1 TTTTTAAAACACGAAAA
* *
91212607 TTTTGAAAACACGAAGA
1 TTTTTAAAACACGAAAA
* * *
91212624 TTTTTGAAACATGAGAA
1 TTTTTAAAACACGAAAA
91212641 TTTTTAAAAGCACGA
1 TTTTTAAAA-CACGA
91212656 GGATTATTGA
Statistics
Matches: 375, Mismatches: 96, Indels: 63
0.70 0.18 0.12
Matches are distributed among these distances:
12 2 0.01
13 4 0.01
15 5 0.01
16 22 0.06
17 204 0.54
18 75 0.20
19 33 0.09
20 13 0.03
21 17 0.05
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:91212501 original size:38 final size:37
Alignment explanation
Indices: 91212429--91212634 Score: 167
Period size: 38 Copynumber: 5.6 Consensus size: 37
91212419 AAGATTTTTT
*
91212429 AAACACGAAAATTTTTTGAAAATACGA-AGATTTTTTTT--
1 AAACACGAAAA-TTTTTG-AAACAC-ATA-ATTTTTTTTGA
* * *
91212467 TAACACGGAAATTTTTGAAACACAGTCATTTTTTTTGA
1 AAACACGAAAATTTTTGAAACACA-TAATTTTTTTTGA
*
91212505 AAACACGAAAATTTTTGAAAGACATAA-TTTTTTTGA
1 AAACACGAAAATTTTTGAAACACATAATTTTTTTTGA
* * * * * *
91212541 AAATACGGAAATTTATAAAACACGAAAATTTTTTCTGA
1 AAACACGAAAATTTTTGAAACAC-ATAATTTTTTTTGA
* *
91212579 AAACAAGAAAATTTTTGAAACAC-TAGA---ATTTTGA
1 AAACACGAAAATTTTTGAAACACATA-ATTTTTTTTGA
*
91212613 AAACACGAAGATTTTTGAAACA
1 AAACACGAAAATTTTTGAAACA
91212635 TGAGAATTTT
Statistics
Matches: 136, Mismatches: 25, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
34 25 0.18
35 1 0.01
36 42 0.31
37 12 0.09
38 56 0.41
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (37 bp):
AAACACGAAAATTTTTGAAACACATAATTTTTTTTGA
Found at i:91212612 original size:16 final size:16
Alignment explanation
Indices: 91212591--91212644 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
91212581 ACAAGAAAAT
91212591 TTTTGAAACACTAGAA
1 TTTTGAAACACTAGAA
* *
91212607 TTTTGAAAACACGAAGAT
1 TTTTG-AAACAC-TAGAA
91212625 TTTTGAAACA-TGAGAA
1 TTTTGAAACACT-AGAA
91212641 TTTT
1 TTTT
91212645 TAAAAGCACG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 12 0.39
17 11 0.35
18 8 0.26
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (16 bp):
TTTTGAAACACTAGAA
Found at i:91212841 original size:17 final size:16
Alignment explanation
Indices: 91212807--91212857 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
91212797 AAAATTATTT
91212807 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
* *
91212823 AAAATCAAATTAAATTA
1 AAAAT-AAAATAAAATA
91212840 AAAATATAAATATAAATA
1 AAAATA-AAATA-AAATA
91212858 TGCATAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 6 0.21
17 18 0.64
18 4 0.14
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:91213006 original size:17 final size:15
Alignment explanation
Indices: 91212984--91213043 Score: 77
Period size: 16 Copynumber: 3.9 Consensus size: 15
91212974 GAATTGAACC
91212984 TCTTTTTTCTTGTTTTT
1 TCTTTTTTC-T-TTTTT
*
91213001 TCTTTTTTCTTTTTC
1 TCTTTTTTCTTTTTT
91213016 TCTCTTTTTCTTTTTT
1 TCT-TTTTTCTTTTTT
91213032 TCTTTTTT-TTTT
1 TCTTTTTTCTTTT
91213044 GCTGGGCTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.10
15 12 0.30
16 15 0.38
17 9 0.22
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (15 bp):
TCTTTTTTCTTTTTT
Found at i:91213007 original size:8 final size:8
Alignment explanation
Indices: 91212986--91213040 Score: 67
Period size: 8 Copynumber: 6.8 Consensus size: 8
91212976 ATTGAACCTC
91212986 TTTTTTCT
1 TTTTTTCT
91212994 TGTTTTT-T
1 T-TTTTTCT
91213002 CTTTTTTCT
1 -TTTTTTCT
*
91213011 TTTTCTCT
1 TTTTTTCT
*
91213019 CTTTTTCT
1 TTTTTTCT
91213027 TTTTTTCT
1 TTTTTTCT
91213035 TTTTTT
1 TTTTTT
91213041 TTTGCTGGGC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 33 0.82
9 7 0.17
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.84
Consensus pattern (8 bp):
TTTTTTCT
Found at i:91213189 original size:23 final size:24
Alignment explanation
Indices: 91213160--91213213 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 24
91213150 CTGCATTTGG
91213160 GCTGCTTCTTTCTTCTTCTTTTTT
1 GCTGCTTCTTTCTTCTTCTTTTTT
91213184 -CTGCTTCTTTCTTCTTCTTTTTT
1 GCTGCTTCTTTCTTCTTCTTTTTT
91213207 GCTGCTT
1 GCTGCTT
91213214 TTTTTTGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.00, C:0.26, G:0.09, T:0.65
Consensus pattern (24 bp):
GCTGCTTCTTTCTTCTTCTTTTTT
Found at i:91213364 original size:24 final size:24
Alignment explanation
Indices: 91213344--91213403 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
91213334 CTTTTCTTTT
*
91213344 TCTTTT-TTCTTTCTTTCTTCTTCC
1 TCTTTTCTTC-TTCCTTCTTCTTCC
91213368 TCTTTTCTTCTTCCTTCTTCTTCC
1 TCTTTTCTTCTTCCTTCTTCTTCC
*
91213392 T-TCTTCTTCTTC
1 TCTTTTCTTCTTC
91213404 AAAGTCTAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 10 0.30
24 20 0.61
25 3 0.09
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (24 bp):
TCTTTTCTTCTTCCTTCTTCTTCC
Found at i:91213366 original size:3 final size:3
Alignment explanation
Indices: 91213332--91213403 Score: 62
Period size: 3 Copynumber: 24.0 Consensus size: 3
91213322 TTTTTATTAT
* *
91213332 TTC TT- TTC TTT TTC TT- TT- TTC TTTC TTTC TTC TTC CTC TT- TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC -TTC -TTC TTC TTC TTC TTC TTC
91213375 TTC TTCC TTC TTC TTCC TTC TTC TTC TTC
1 TTC TT-C TTC TTC TT-C TTC TTC TTC TTC
91213404 AAAGTCTAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
2 8 0.14
3 38 0.64
4 13 0.22
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:91213371 original size:13 final size:13
Alignment explanation
Indices: 91213355--91213403 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
91213345 CTTTTTTCTT
91213355 TCTTTCTTCTTCC
1 TCTTTCTTCTTCC
91213368 TCTTTTCTTCTT-C
1 TC-TTTCTTCTTCC
91213381 -C-TTCTTCTTCC
1 TCTTTCTTCTTCC
91213392 T-TCTTCTTCTTC
1 TCT-TTCTTCTTC
91213404 AAAGTCTAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
10 8 0.26
11 1 0.03
12 1 0.03
13 12 0.39
14 9 0.29
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TCTTTCTTCTTCC
Found at i:91213387 original size:10 final size:10
Alignment explanation
Indices: 91213372--91213400 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
91213362 TCTTCCTCTT
91213372 TTCTTCTTCC
1 TTCTTCTTCC
91213382 TTCTTCTTCC
1 TTCTTCTTCC
91213392 TTCTTCTTC
1 TTCTTCTTC
91213401 TTCAAAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TTCTTCTTCC
Found at i:91213499 original size:18 final size:19
Alignment explanation
Indices: 91213463--91213503 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
91213453 CGGTACTCTT
*
91213463 TCTTTTCTTCTCCTCTTTC
1 TCTTTTCCTCTCCTCTTTC
91213482 TCTTTTCCT-TCCT-TTT-
1 TCTTTTCCTCTCCTCTTTC
91213498 TCTTTT
1 TCTTTT
91213504 TTTCGAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 3 0.14
18 4 0.19
19 8 0.38
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (19 bp):
TCTTTTCCTCTCCTCTTTC
Found at i:91213505 original size:18 final size:16
Alignment explanation
Indices: 91213458--91213505 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
91213448 GACGCCGGTA
91213458 CTCTTTCTTTTCTTCTC
1 CTCTTTCTTTT-TTCTC
*
91213475 CTCTTTCTCTTTTCCTTC
1 CTCTTTCT-TTTTTC-TC
*
91213493 CTTTTTCTTTTTT
1 CTCTTTCTTTTTT
91213506 TCGAAACTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
CTCTTTCTTTTTTCTC
Found at i:91213966 original size:29 final size:29
Alignment explanation
Indices: 91213933--91214049 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
91213923 TGTAATTTTT
*
91213933 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
91213962 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
91213992 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
91214021 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
91214050 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 14 0.19
30 56 0.78
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:91213988 original size:30 final size:30
Alignment explanation
Indices: 91213948--91214049 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
91213938 ATTTAGGATT
*
91213948 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
91213978 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
91214008 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
91214038 AAAATGCAATTT
1 AAAATGAAATTT
91214050 TTATTTTTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.03
30 60 0.97
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:91214070 original size:14 final size:15
Alignment explanation
Indices: 91214045--91214079 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
91214035 GTCAAAATGC
*
91214045 AATTTTTATTTTTTA
1 AATTTTTATTTTTGA
91214060 AATTTTT-TTTTTGA
1 AATTTTTATTTTTGA
91214074 AATTTT
1 AATTTT
91214080 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
AATTTTTATTTTTGA
Found at i:91214505 original size:54 final size:54
Alignment explanation
Indices: 91214320--91214635 Score: 518
Period size: 54 Copynumber: 5.9 Consensus size: 54
91214310 CACGTGAGCC
* *
91214320 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AA
*
91214375 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAG--A--AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* *
91214425 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
91214479 AAGGCTCAACTCACCTCTCGCAATATG-GTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
91214532 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
91214586 AAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
91214636 CTGAAAAGTA
Statistics
Matches: 248, Mismatches: 7, Indels: 13
0.93 0.03 0.05
Matches are distributed among these distances:
50 48 0.19
52 1 0.00
53 51 0.21
54 104 0.42
55 38 0.15
56 6 0.02
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:91214558 original size:107 final size:106
Alignment explanation
Indices: 91214320--91214635 Score: 514
Period size: 107 Copynumber: 3.0 Consensus size: 106
91214310 CACGTGAGCC
* *
91214320 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAA
*
91214384 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAG--AAA
64 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAA
* *
91214425 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
91214490 CACCTCTCGCAATATG-GTTGATTTTTGAAAAACAGAAATTAA
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA--AA
91214532 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
*
91214597 CATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
91214636 CTGAAAAGTA
Statistics
Matches: 197, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
103 18 0.09
104 29 0.15
105 38 0.19
106 10 0.05
107 80 0.41
108 22 0.11
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (106 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAA
Found at i:91214753 original size:13 final size:14
Alignment explanation
Indices: 91214721--91214748 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
91214711 TTTTTGAAAC
91214721 ACAGAAATTAAAAA
1 ACAGAAATTAAAAA
91214735 ACAGAAATTAAAAA
1 ACAGAAATTAAAAA
91214749 TAGAATTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.14
Consensus pattern (14 bp):
ACAGAAATTAAAAA
Found at i:91215020 original size:72 final size:72
Alignment explanation
Indices: 91214836--91215207 Score: 601
Period size: 72 Copynumber: 5.2 Consensus size: 72
91214826 ATTAGTAAAG
* * *
91214836 CAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCATCTCTCGCAATATGAGTT-AAGT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-T
91214900 TTTG-AAA
65 TTTGAAAA
*
91214907 CAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
91214972 TTGAAAA
66 TTGAAAA
*
91214979 CA-AAGATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT
1 CAGAA-ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT
*
91215043 TTTGAGAAG
65 TTTGA-AAA
91215052 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
91215117 TTGAAAA
66 TTGAAAA
*
91215124 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
91215188 TTGAAAAA
66 TTG-AAAA
*
91215196 CAAAAATT-AAAA
1 CAGAAATTGAAAA
91215208 GGCTTAACTC
Statistics
Matches: 283, Mismatches: 12, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
71 72 0.25
72 142 0.50
73 67 0.24
74 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (72 bp):
CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
TTGAAAA
Found at i:91215110 original size:145 final size:143
Alignment explanation
Indices: 91214836--91215193 Score: 614
Period size: 145 Copynumber: 2.5 Consensus size: 143
91214826 ATTAGTAAAG
* * * *
91214836 CAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCATCTCTCGCAATATGAGTT-AAGT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-T
*
91214900 TTTGAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
65 TTTGAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
91214965 TTGAATTTTGAAAA
130 TTGAATTTTGAAAA
91214979 CA-AAGATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT
1 CAGAA-ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT
91215043 TTTGAGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
65 TTTGA-AA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
91215108 AGTTGAATTTTGAAAA
128 AGTTGAATTTTGAAAA
91215124 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
91215188 TTGAAA
66 TTGAAA
91215194 AACAAAAATT
Statistics
Matches: 205, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
142 2 0.01
143 61 0.30
144 11 0.05
145 129 0.63
146 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (143 bp):
CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
TTGAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
TGAATTTTGAAAA
Found at i:91215302 original size:122 final size:125
Alignment explanation
Indices: 91215082--91215325 Score: 361
Period size: 122 Copynumber: 2.0 Consensus size: 125
91215072 ACGTGTCTTG
** * * * *
91215082 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
91215147 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAAACAAAAATTAAA
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTAAA
* * *
91215207 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
*
91215269 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATT
91215326 GAAATTACCT
Statistics
Matches: 108, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
122 71 0.66
123 9 0.08
124 3 0.03
125 25 0.23
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (125 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAA
Found at i:91215312 original size:339 final size:344
Alignment explanation
Indices: 91214866--91215748 Score: 1402
Period size: 339 Copynumber: 2.5 Consensus size: 344
91214856 GCGTGCCTTG
* * * *
91214866 AGGCTCAACTCATCTCTCGCAATATGAGTTAAGTTTTGAAACAGAAATTGAAAATACCTCAATGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAA-TTTTAAAACA-AAATTGAAAATACCTCAATGT
91214931 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTAC
64 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTAC
91214995 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATT
128 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATT
91215060 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAC
193 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAC
91215125 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTT
258 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
*
91215189 TGAAAA-A-CAA-AAATTA-AA
323 TGAAAACAGAAATAAATTACAA
* *
91215207 AGGCTTAACTCACCTCTCGCAATATGAGTCAA-TTTAAAACATAAACTAAAAATACCTCAATGTG
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTAAAACA-AAATTGAAAATACCTCAATGTG
91215271 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
65 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
91215336 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGA
130 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGA
91215401 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAG
195 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAG
91215466 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
260 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
91215531 AAAACAGAAATTGAAATTACCTCAA
325 AAAACAGAAA-T-AAATTA---CAA
* * * *
91215556 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAGATTGAAATT
1 AG-G-CTT-A-ACTC-AC-C---TCTCGCAATATGAG-TCAATTTT-AAAACAAA-ATTGAAAAT
*
91215621 ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAA
54 ACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAA
*
91215686 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
118 TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
91215749 AAAACAAAAA
Statistics
Matches: 501, Mismatches: 16, Indels: 29
0.92 0.03 0.05
Matches are distributed among these distances:
339 278 0.55
340 12 0.02
341 30 0.06
342 2 0.00
345 6 0.01
349 3 0.01
350 1 0.00
351 3 0.01
352 1 0.00
353 3 0.01
354 2 0.00
355 1 0.00
358 14 0.03
359 3 0.01
360 5 0.01
361 69 0.14
362 68 0.14
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (344 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTAAAACAAAATTGAAAATACCTCAATGTGT
CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTC
AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAA
AATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGA
AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
AAACAGAAATAAATTACAA
Found at i:91215349 original size:72 final size:72
Alignment explanation
Indices: 91215207--91215760 Score: 927
Period size: 72 Copynumber: 7.7 Consensus size: 72
91215197 AAAAATTAAA
* ** * * * * * *
91215207 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91215269 TGTCTTG
66 TGTCTTG
91215276 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91215341 TGTCTTG
66 TGTCTTG
* *
91215348 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAAC
91215413 GTGTCTTG
65 GTGTCTTG
91215421 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91215486 TGTCTTG
66 TGTCTTG
91215493 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
91215558 TGTCTTG
66 TGTCTTG
91215565 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTACCTCAAC
91215629 GTGTCTTG
65 GTGTCTTG
*
91215637 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
91215702 GTGTCTTG
65 GTGTCTTG
*
91215710 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
91215761 AAAAGGCTTA
Statistics
Matches: 462, Mismatches: 15, Indels: 12
0.94 0.03 0.02
Matches are distributed among these distances:
69 25 0.05
70 3 0.01
71 5 0.01
72 282 0.61
73 141 0.31
74 6 0.01
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTG
Found at i:91215466 original size:145 final size:144
Alignment explanation
Indices: 91215207--91215760 Score: 936
Period size: 145 Copynumber: 3.8 Consensus size: 144
91215197 AAAAATTAAA
* ** * * * * * *
91215207 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAGCAGAAATTGAAAATACCTCAACG
91215269 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
91215334 CTCAACGTGTCTTG
131 CTCAACGTGTCTTG
91215348 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAGCAGAAATTGAAAATACCTCAAC
91215413 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
65 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
91215478 CCTCAACGTGTCTTG
130 CCTCAACGTGTCTTG
* *
91215493 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAGCAGAAATTGAAAATACCTCAACG
91215558 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTA
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTA
91215622 CCTCAACGTGTCTTG
130 CCTCAACGTGTCTTG
91215637 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAGCAGAAATTGAAAATACCTCAAC
*
91215702 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATT
65 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
91215761 AAAAGGCTTA
Statistics
Matches: 392, Mismatches: 13, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
141 25 0.06
142 3 0.01
143 5 0.01
144 139 0.35
145 209 0.53
146 9 0.02
147 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (144 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAGCAGAAATTGAAAATACCTCAACG
TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
CTCAACGTGTCTTG
Found at i:91215686 original size:217 final size:217
Alignment explanation
Indices: 91215207--91215760 Score: 938
Period size: 217 Copynumber: 2.6 Consensus size: 217
91215197 AAAAATTAAA
* ** * * * * *
91215207 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
91215269 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
*
91215334 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATT
131 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAACAGAAATT
91215399 GAAAATACCTCAACGTGTCTTG
196 GAAAATACCTCAACGTGTCTTG
*
91215421 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
91215486 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
91215551 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACA-AAGAT
131 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAACAGAA-AT
*
91215614 TGAAATTACCTCAACGTGTCTTG
195 TGAAAATACCTCAACGTGTCTTG
91215637 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACCTCAAC
*
91215702 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATT
65 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
91215761 AAAAGGCTTA
Statistics
Matches: 321, Mismatches: 13, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
214 25 0.08
215 5 0.02
216 73 0.23
217 207 0.64
218 11 0.03
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (217 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAACAGAAATT
GAAAATACCTCAACGTGTCTTG
Found at i:91215860 original size:123 final size:126
Alignment explanation
Indices: 91215637--91215882 Score: 374
Period size: 123 Copynumber: 2.0 Consensus size: 126
91215627 ACGTGTCTTG
** * * *
91215637 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAAGCAGAAACTAAAAATACCTCAAC
91215702 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAA
66 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTAAA
* * *
91215764 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAA-CATAAACTAAAAATACCTCAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAAGCAGAAACTAAAAATACCTCAAC
*
91215825 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
66 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATT
91215883 GAAATTACCT
Statistics
Matches: 110, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
122 11 0.10
123 64 0.58
124 4 0.04
125 3 0.03
126 3 0.03
127 25 0.23
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (126 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAAGCAGAAACTAAAAATACCTCAAC
GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAA
Found at i:91215990 original size:73 final size:73
Alignment explanation
Indices: 91215764--91216105 Score: 498
Period size: 73 Copynumber: 4.8 Consensus size: 73
91215754 AAAAATTAAA
* ** * * * * *
91215764 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT--AAAACATAAACTAAAAATACCTCAAT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAAATTACCTCAAC
91215825 GTGTCTTG
66 GTGTCTTG
* *
91215833 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAAATTACCTCAAC
91215897 GTGTCTTG
66 GTGTCTTG
*
91215905 AGGCTCAACTCATTTCTCGCAATATGAGTTCAATTTTGAAAAACAAAAATTAAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAAATTACCTCAAC
91215970 GTGTCTTG
66 GTGTCTTG
* * *
91215978 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAA-TATCTCAA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATT-AAAATTACCTCAA
91216042 CGTGTCTTG
65 CGTGTCTTG
*
91216051 AGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAAA
91216106 GGTTTAACTC
Statistics
Matches: 249, Mismatches: 19, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
69 25 0.10
70 3 0.01
71 3 0.01
72 70 0.28
73 144 0.58
74 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (73 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAAATTACCTCAAC
GTGTCTTG
Found at i:91216094 original size:146 final size:145
Alignment explanation
Indices: 91215764--91216105 Score: 548
Period size: 146 Copynumber: 2.4 Consensus size: 145
91215754 AAAAATTAAA
* ** * * *
91215764 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT--AAAACATAAACTAAAAATACCTCAAT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTCAATTTTGAAAAACAAAAATTAAAAATACCTCAAC
*
91215825 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
66 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATA
91215890 CCTCAACGTGTCTTG
131 CCTCAACGTGTCTTG
*
91215905 AGGCTCAACTCATTTCTCGCAATATGAGTTCAATTTTGAAAAACAAAAATTAAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTCAATTTTGAAAAACAAAAATTAAAAATACCTCAAC
91215970 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAAT
66 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAAT
*
91216035 ATCTCAACGTGTCTTG
130 ACCTCAACGTGTCTTG
* *
91216051 AGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTCAATTTTGAAAAACAAAAATTAAAA
91216106 GGTTTAACTC
Statistics
Matches: 185, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
141 25 0.14
142 4 0.02
143 3 0.02
145 72 0.39
146 81 0.44
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (145 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTCAATTTTGAAAAACAAAAATTAAAAATACCTCAAC
GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATA
CCTCAACGTGTCTTG
Found at i:91216098 original size:341 final size:341
Alignment explanation
Indices: 91215421--91216300 Score: 1573
Period size: 341 Copynumber: 2.6 Consensus size: 341
91215411 ACGTGTCTTG
* ** * * * * * *
91215421 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
91215486 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
63 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTAC
*
91215551 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAAAGATT
128 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATT
*
91215615 GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAG
193 AAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAG
91215680 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
258 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
91215745 TTGAAAAACAAAAATTAAA
323 TTGAAAAACAAAAATTAAA
91215764 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAATGTGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAATGTGT
91215829 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTC
66 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTC
*
91215894 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTCAATTTTGAAAAACAAAAATTAAA
131 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAA
91215959 ATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAG
196 ATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAG
* *
91216024 AAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTG
261 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
91216089 AAAAACAAAAATTAAA
326 AAAAACAAAAATTAAA
*
91216105 AGGTTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAATGTGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAATGTGT
*
91216170 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAACTACCTC
66 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTC
*
91216235 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAATTAAA
131 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAA
91216300 A
196 A
91216301 GGCTTAACTC
Statistics
Matches: 518, Mismatches: 18, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
340 138 0.27
341 352 0.68
342 3 0.01
343 25 0.05
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (341 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAATGTGT
CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTC
AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAA
ATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAG
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
AAAAACAAAAATTAAA
Found at i:91216211 original size:123 final size:126
Alignment explanation
Indices: 91215992--91216223 Score: 355
Period size: 123 Copynumber: 1.9 Consensus size: 126
91215982 TCAACTCATT
* * * *
91215992 TCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTCAATTTTGAAAAGCAGAAACTAAAAATACCTCAACGTGTCTTGAGGCTC
*
91216057 AACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAATTAAAAGGTTTAACTCACC
66 AACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTAAAAGGTTTAACTCACC
* *
91216119 TCTCGCAATATGAG-TCAA-TTT-AAAA-CATAAACTAAAAATACCTCAATGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTCAATTTTGAAAAGCAGAAACTAAAAATACCTCAACGTGTCTTGAGGCTC
*
91216180 AACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
66 AACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATT
91216224 GAAACTACCT
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
122 11 0.11
123 62 0.64
124 4 0.04
125 3 0.03
126 3 0.03
127 14 0.14
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (126 bp):
TCTCGCAATATGAGTTCAATTTTGAAAAGCAGAAACTAAAAATACCTCAACGTGTCTTGAGGCTC
AACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAAAGGTTTAACTCACC
Found at i:91216244 original size:72 final size:72
Alignment explanation
Indices: 91216119--91216300 Score: 262
Period size: 72 Copynumber: 2.6 Consensus size: 72
91216109 TTAACTCACC
* * * *
91216119 TCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCA
91216181 ACTCATT
66 ACTCATT
* * *
91216188 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCA
91216253 ACTCATT
66 ACTCATT
*
91216260 TCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAATTAAAA
1 TCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTAAAA
91216301 GGCTTAACTC
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
69 14 0.14
70 3 0.03
71 3 0.03
72 66 0.66
73 14 0.14
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (72 bp):
TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCA
ACTCATT
Found at i:91216294 original size:195 final size:196
Alignment explanation
Indices: 91215905--91216409 Score: 834
Period size: 195 Copynumber: 2.6 Consensus size: 196
91215895 ACGTGTCTTG
* ** * * *
91215905 AGGCTCAACTCATTTCTCGCAATATGAGTTCAATTTTGAAAAACAAAAATTAAAATTACCTCAAC
1 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT--AAAACATAAACTAAAAATACCTCAAC
91215970 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAAT
62 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAAT
*
91216035 ATCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAA
127 ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAA
91216100 TTAAA
192 TTAAA
* *
91216105 AGGTTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAATGTGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGT
*
91216170 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAACTACCT
66 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCT
91216234 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAATTAA
131 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAATTAA
91216299 A
196 A
* *
91216300 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGT
* *
91216365 CTCGAGGCTCAACTCACTTCTCGCAATATGAGTTG-ATTTTGAAAA
66 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA
91216410 AAGTAGAAAT
Statistics
Matches: 289, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
194 10 0.03
195 176 0.61
196 72 0.25
198 3 0.01
199 4 0.01
200 24 0.08
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (196 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGT
CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCT
CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACAAAAATTAA
A
Found at i:91216396 original size:123 final size:125
Alignment explanation
Indices: 91216174--91216542 Score: 361
Period size: 123 Copynumber: 2.9 Consensus size: 125
91216164 ATGTGTCTTG
* ** * * * *
91216174 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAACTACCTCAACG
1 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
* * *
91216239 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAAACA-A-AAATTAAA
65 TGCCTCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTGAAAAA-AGAGAAATTAAA
* *
91216300 AGGCTTAACTCACCTCTCGCAATATGAGTCAA-TTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTGAAAACAGAAACTAAAAATACCTCAACGT
91216363 GCCTCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAGTAGAAATTAAA
66 GCCTCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAG-AGAAATTAAA
* * * * * *
91216424 AGG-TTCAACCCACCTCTCGTAATATGAGTTGATTTTTGAAAACATAAATTGAACAGGAATTGAA
1 AGGCTT-AACTCACCTCTCGCAATATGAG-TCAATTTTGAAAAC----A--G---A--AACTAAA
* * *
91216488 AATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
53 AATACCTCAACGTGCCTCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
91216543 CTTGAAAATA
Statistics
Matches: 202, Mismatches: 23, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
121 1 0.00
122 10 0.05
123 61 0.30
124 34 0.17
125 5 0.02
126 28 0.14
127 5 0.02
131 1 0.00
136 1 0.00
138 56 0.28
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (125 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTGAAAACAGAAACTAAAAATACCTCAACGT
GCCTCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAGAGAAATTAAA
Found at i:91216729 original size:122 final size:126
Alignment explanation
Indices: 91216507--91216738 Score: 321
Period size: 122 Copynumber: 1.9 Consensus size: 126
91216497 ACGTGTCTTG
* * * * *
91216507 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAATAGAAATTAAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCA-TATCTTGAAAACAGAAACTAAAAATACCTCAG
*
91216572 CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTGAAAAACAAATATTAAA
65 CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTGAAAAACAAATATTAAA
* *
91216634 AGGCTTAACTCACCTCTCGCAATATGAG-TCA-AT-TT-AAAACATAAACTAAAAATACCTC-GA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCATATCTTGAAAACAGAAACTAAAAATACCTCAG-
* *
91216694 CGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
65 CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTT
91216739 TTTTTAAATT
Statistics
Matches: 94, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
121 1 0.01
122 61 0.65
123 2 0.02
124 1 0.01
126 2 0.02
127 27 0.29
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (126 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCATATCTTGAAAACAGAAACTAAAAATACCTCAGC
GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTGAAAAACAAATATTAAA
Found at i:91216753 original size:69 final size:69
Alignment explanation
Indices: 91216680--91216809 Score: 206
Period size: 69 Copynumber: 1.9 Consensus size: 69
91216670 AAACATAAAC
* *
91216680 TAAAAATACCTCGACGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTA
1 TAAAAATACCTCAACGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTTTTTA
91216745 AATT
66 AATT
* ** *
91216749 TAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTT
1 TAAAAATACCTCAACGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTT
91216810 GAAACAGAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 55 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (69 bp):
TAAAAATACCTCAACGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTTTTTA
AATT
Found at i:91225135 original size:97 final size:97
Alignment explanation
Indices: 91225017--91225204 Score: 247
Period size: 97 Copynumber: 1.9 Consensus size: 97
91225007 GGAAATTTCA
* * * *
91225017 AAAACACGAAAATTTTTAAAACACGACATTTTTTGAAACAC-GAGAATTTTTAAAACA-AGACAT
1 AAAACACGAAAATTTTTAAAACACGAAAATTTTTAAAACACGGA-AATTTTTAAAACACAGAAAT
91225080 TTTTT-GAAACACAATTTTTTTCTTAAAAAAATTT
65 TTTTTAGAAA-ACAATTTTTTT-TTAAAAAAATTT
* * * *
91225114 AAAATACGAGAATTTTTAAAACACGAAAATTTTTAAAACACGGAAATTTTTGAAACACGGAAATT
1 AAAACACGAAAATTTTTAAAACACGAAAATTTTTAAAACACGGAAATTTTTAAAACACAGAAATT
*
91225179 TTTTAGAAAACGATTTTTTTTTAAAA
66 TTTTAGAAAACAATTTTTTTTTAAAA
91225205 TCACCGGAGT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
97 54 0.68
98 21 0.27
99 4 0.05
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (97 bp):
AAAACACGAAAATTTTTAAAACACGAAAATTTTTAAAACACGGAAATTTTTAAAACACAGAAATT
TTTTAGAAAACAATTTTTTTTTAAAAAAATTT
Found at i:91225159 original size:18 final size:17
Alignment explanation
Indices: 91224979--91225499 Score: 254
Period size: 17 Copynumber: 29.8 Consensus size: 17
91224969 TAAAAGTTTT
*
91224979 TTTTTAAAACACGAGAA
1 TTTTTAAAACACGAAAA
*
91224996 TTTTT-AAACACGGAAA
1 TTTTTAAAACACGAAAA
**
91225012 TTTCAAAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
91225029 TTTTTAAAACACGACAT
1 TTTTTAAAACACGAAAA
* *
91225046 TTTTTGAAACACGAGAA
1 TTTTTAAAACACGAAAA
* * *
91225063 TTTTTAAAACAAGACAT
1 TTTTTAAAACACGAAAA
* **
91225080 TTTTTGAAACAC-AATT
1 TTTTTAAAACACGAAAA
**
91225096 TTTTTCTTAA-A--AAAA
1 TTTTT-AAAACACGAAAA
* *
91225111 --TTTAAAATACGAGAA
1 TTTTTAAAACACGAAAA
91225126 TTTTTAAAACACGAAAA
1 TTTTTAAAACACGAAAA
*
91225143 TTTTTAAAACACGGAAA
1 TTTTTAAAACACGAAAA
* *
91225160 TTTTTGAAACACGGAAAT
1 TTTTTAAAACAC-GAAAA
***
91225178 TTTTTAGAAA-ACGATTTT
1 TTTTTA-AAACACGA-AAA
* *
91225196 TTTTTAAAATCACCG-GAG
1 TTTTTAAAA-CA-CGAAAA
91225214 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* *
91225232 TCTTTGAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
*
91225249 TTTTTGAAAACACGAAGA
1 TTTTT-AAAACACGAAAA
*
91225267 TTTTTGAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
91225284 TTTTTTGAAAATACGAAGATT
1 -TTTTT-AAAACACGAA-A-A
** *
91225305 TTTTTTTAACACGGAAA
1 TTTTTAAAACACGAAAA
* ***
91225322 TTTTTGAAACACGGTCATTT
1 TTTTTAAAACAC-G--AAAA
91225342 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
* **
91225360 TTTTTGAAAGACATG-ATT
1 TTTTT-AAA-ACACGAAAA
* *
91225378 TTTTTGAAAATACGGAAA
1 TTTTT-AAAACACGAAAA
*
91225396 TTTATAAAACACGAAAA
1 TTTTTAAAACACGAAAA
*
91225413 TTTTTTCTGAAAACAAGAAAA
1 --TTTT-T-AAAACACGAAAA
* * *
91225434 TTTTTGAAACACTAGAA
1 TTTTTAAAACACGAAAA
* *
91225451 TTTTGAAAACACGAAGA
1 TTTTTAAAACACGAAAA
* * *
91225468 TTTTTGAAACATGAGAA
1 TTTTTAAAACACGAAAA
91225485 TTTTTAAAAGCACGA
1 TTTTTAAAA-CACGA
91225500 GGATTATTGA
Statistics
Matches: 377, Mismatches: 94, Indels: 65
0.70 0.18 0.12
Matches are distributed among these distances:
12 2 0.01
13 4 0.01
15 5 0.01
16 20 0.05
17 201 0.53
18 80 0.21
19 33 0.09
20 15 0.04
21 17 0.05
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.33
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:91225380 original size:36 final size:37
Alignment explanation
Indices: 91225126--91225478 Score: 206
Period size: 36 Copynumber: 9.8 Consensus size: 37
91225116 AATACGAGAA
* **
91225126 TTTTT-AAAACACGAAAATTTTTAAAACACG--GAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACGATGATT
*
91225160 TTTTTG-AAACACGGAAATTTTTTAGAAA-ACGAT--TT
1 TTTTTGAAAACAC-GAAAATTTTT-GAAACACGATGATT
* * * **
91225195 TTTTTTAAAATCACCG-GAGTTTTTGAAAACACGA--AAA
1 TTTTTGAAAA-CA-CGAAAATTTTTG-AAACACGATGATT
* *
91225232 TCTTTG-AAACACCG-AAATTTTTGAAAACACGAAGA--
1 TTTTTGAAAACA-CGAAAATTTTTG-AAACACGATGATT
* *
91225267 TTTTTG-AAACACGAAAATTTTTTGAAAATACGAAGATT
1 TTTTTGAAAACACGAAAA-TTTTTG-AAACACGATGATT
** * * *
91225305 TTTTT-TTAACACGGAAATTTTTGAAACACGGTCATTT
1 TTTTTGAAAACACGAAAATTTTTGAAACACGATGA-TT
*
91225342 TTTTTGAAAACACGAAAATTTTTGAAAGAC-ATGATT
1 TTTTTGAAAACACGAAAATTTTTGAAACACGATGATT
* * * * **
91225378 TTTTTGAAAATACGGAAATTTATAAAACACGAAAATT
1 TTTTTGAAAACACGAAAATTTTTGAAACACGATGATT
* *
91225415 TTTTCTGAAAACAAGAAAATTTTTGAAACACTA-GA--
1 TTTT-TGAAAACACGAAAATTTTTGAAACACGATGATT
* *
91225450 ATTTTGAAAACACGAAGATTTTTGAAACA
1 TTTTTGAAAACACGAAAATTTTTGAAACA
91225479 TGAGAATTTT
Statistics
Matches: 253, Mismatches: 44, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
34 36 0.14
35 55 0.22
36 69 0.27
37 36 0.14
38 57 0.23
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (37 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACGATGATT
Found at i:91225406 original size:74 final size:74
Alignment explanation
Indices: 91225238--91225442 Score: 204
Period size: 74 Copynumber: 2.8 Consensus size: 74
91225228 AAAATCTTTG
* * * *
91225238 AAACACCGAAATTTTTGAAAACACGAAGA---TTTTTG-AAACACGAAAATTTTTTGAAAATACG
1 AAACACGGAAATTTAT-AAAACACGAAAATTTTTTTTGAAAACACGAAAA-TTTTTG-AAAGACG
*
91225299 AAGATTTTTTTT
63 AAGATTTTTTTA
* * * *** *
91225311 TAACACGGAAATTTTTGAAACACGGTCATTTTTTTTGAAAACACGAAAATTTTTGAAAGAC-ATG
1 AAACACGGAAATTTATAAAACACGAAAATTTTTTTTGAAAACACGAAAATTTTTGAAAGACGAAG
91225375 ATTTTTTTGA
66 ATTTTTTT-A
* * *
91225385 AAATACGGAAATTTATAAAACACGAAAATTTTTTCTGAAAACAAGAAAATTTTTGAAA
1 AAACACGGAAATTTATAAAACACGAAAATTTTTTTTGAAAACACGAAAATTTTTGAAA
91225443 CACTAGAATT
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
72 8 0.07
73 24 0.22
74 54 0.50
75 12 0.11
76 11 0.10
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (74 bp):
AAACACGGAAATTTATAAAACACGAAAATTTTTTTTGAAAACACGAAAATTTTTGAAAGACGAAG
ATTTTTTTA
Found at i:91225456 original size:16 final size:16
Alignment explanation
Indices: 91225435--91225488 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
91225425 ACAAGAAAAT
91225435 TTTTGAAACACTAGAA
1 TTTTGAAACACTAGAA
* *
91225451 TTTTGAAAACACGAAGAT
1 TTTTG-AAACAC-TAGAA
91225469 TTTTGAAACA-TGAGAA
1 TTTTGAAACACT-AGAA
91225485 TTTT
1 TTTT
91225489 TAAAAGCACG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 12 0.39
17 11 0.35
18 8 0.26
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (16 bp):
TTTTGAAACACTAGAA
Found at i:91225661 original size:5 final size:5
Alignment explanation
Indices: 91225651--91225707 Score: 51
Period size: 6 Copynumber: 10.4 Consensus size: 5
91225641 TAAAATTATT
* *
91225651 TAAAA TAAAA TAAAA TAAAA TAAAAA TCAAAT TAAAT TAAAAA TATAAA
1 TAAAA TAAAA TAAAA TAAAA T-AAAA T-AAAA TAAAA T-AAAA TA-AAA
91225700 TATAAA TA
1 TA-AAA TA
91225708 TGCATAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
5 22 0.48
6 24 0.52
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (5 bp):
TAAAA
Found at i:91225682 original size:11 final size:10
Alignment explanation
Indices: 91225651--91225707 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 10
91225641 TAAAATTATT
91225651 TAAAATAAAA
1 TAAAATAAAA
91225661 TAAAATAAAA
1 TAAAATAAAA
*
91225671 TAAAAATCAAAT
1 T-AAAAT-AAAA
*
91225683 TAAATTAAAAA
1 TAAAAT-AAAA
91225694 TATAAATATAAA
1 TA-AAATA-AAA
91225706 TA
1 TA
91225708 TGCATAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
10 11 0.29
11 15 0.39
12 12 0.32
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:91225691 original size:17 final size:16
Alignment explanation
Indices: 91225651--91225707 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 16
91225641 TAAAATTATT
91225651 TAAAAT-AAAATAAAA
1 TAAAATAAAAATAAAA
*
91225666 TAAAATAAAAATCAAAT
1 TAAAATAAAAAT-AAAA
*
91225683 TAAATTAAAAATATAAA
1 TAAAATAAAAATA-AAA
91225700 TATAAATA
1 TA-AAATA
91225708 TGCATAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
15 6 0.18
16 6 0.18
17 18 0.53
18 4 0.12
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAATAAAAATAAAA
Found at i:91225851 original size:10 final size:9
Alignment explanation
Indices: 91225836--91225893 Score: 52
Period size: 10 Copynumber: 6.7 Consensus size: 9
91225826 ATTGAACCTC
91225836 TTTTTTCTT
1 TTTTTTCTT
91225845 GTTTTTTC--
1 -TTTTTTCTT
91225853 TTTTTTC-T
1 TTTTTTCTT
*
91225861 TTTTCTC-T
1 TTTTTTCTT
*
91225869 CTTTTTCTT
1 TTTTTTCTT
91225878 TTTTTCTCTT
1 TTTTT-TCTT
91225888 TTTTTT
1 TTTTTT
91225894 TGCTGGGCTG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
7 7 0.17
8 12 0.29
9 6 0.15
10 16 0.39
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:91225856 original size:17 final size:16
Alignment explanation
Indices: 91225834--91225891 Score: 73
Period size: 17 Copynumber: 3.5 Consensus size: 16
91225824 GAATTGAACC
91225834 TCTTTTTTCTTGTTTTT
1 TCTTTTTTCTT-TTTTT
*
91225851 TCTTTTTTC-TTTTTC
1 TCTTTTTTCTTTTTTT
91225866 TCTCTTTTTCTTTTTTT
1 TCT-TTTTTCTTTTTTT
91225883 CTCTTTTTT
1 -TCTTTTTT
91225892 TTTGCTGGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
15 7 0.19
16 7 0.19
17 19 0.53
18 3 0.08
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (16 bp):
TCTTTTTTCTTTTTTT
Found at i:91225873 original size:16 final size:15
Alignment explanation
Indices: 91225846--91225894 Score: 66
Period size: 16 Copynumber: 3.3 Consensus size: 15
91225836 TTTTTTCTTG
91225846 TTTTTTCT-TTTTTC
1 TTTTTTCTCTTTTTC
91225860 TTTTTCTCTCTTTTTC
1 TTTTT-TCTCTTTTTC
91225876 TTTTTTTCTCTTTTT-
1 -TTTTTTCTCTTTTTC
91225891 TTTT
1 TTTT
91225895 GCTGGGCTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 9 0.28
15 3 0.09
16 15 0.47
17 5 0.16
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTCTCTTTTTC
Found at i:91226044 original size:24 final size:24
Alignment explanation
Indices: 91226011--91226065 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
91226001 CTGCATTTGG
91226011 GCTGCTTCTTTCTTCTTCTTTTTT
1 GCTGCTTCTTTCTTCTTCTTTTTT
*
91226035 TCTGCTTCTTTCTTCTTCTTTTTT
1 GCTGCTTCTTTCTTCTTCTTTTTT
91226059 GCTGCTT
1 GCTGCTT
91226066 TTTTTTTGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.00, C:0.25, G:0.09, T:0.65
Consensus pattern (24 bp):
GCTGCTTCTTTCTTCTTCTTTTTT
Found at i:91226075 original size:11 final size:11
Alignment explanation
Indices: 91226012--91226077 Score: 60
Period size: 11 Copynumber: 5.6 Consensus size: 11
91226002 TGCATTTGGG
91226012 CTGCTTCTTTCTT
1 CTGCTT-TTT-TT
*
91226025 CTTCTTTTTTT
1 CTGCTTTTTTT
91226036 CTGCTTCTTTCTT
1 CTGCTT-TTT-TT
* *
91226049 CTTCTTTTTTG
1 CTGCTTTTTTT
91226060 CTGCTTTTTTT
1 CTGCTTTTTTT
*
91226071 TTGCTTT
1 CTGCTTT
91226078 GGTTTTTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 23 0.52
12 9 0.20
13 12 0.27
ACGTcount: A:0.00, C:0.23, G:0.08, T:0.70
Consensus pattern (11 bp):
CTGCTTTTTTT
Found at i:91226215 original size:24 final size:24
Alignment explanation
Indices: 91226195--91226254 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
91226185 CTTTTCTTTT
*
91226195 TCTTTT-TTCTTTCTTTCTTCTTCC
1 TCTTTTCTTC-TTCCTTCTTCTTCC
91226219 TCTTTTCTTCTTCCTTCTTCTTCC
1 TCTTTTCTTCTTCCTTCTTCTTCC
*
91226243 T-TCTTCTTCTTC
1 TCTTTTCTTCTTC
91226255 AAAGTCTAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 10 0.30
24 20 0.61
25 3 0.09
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (24 bp):
TCTTTTCTTCTTCCTTCTTCTTCC
Found at i:91226217 original size:3 final size:3
Alignment explanation
Indices: 91226183--91226254 Score: 62
Period size: 3 Copynumber: 24.0 Consensus size: 3
91226173 TTTTTATTAT
* *
91226183 TTC TT- TTC TTT TTC TT- TT- TTC TTTC TTTC TTC TTC CTC TT- TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC -TTC -TTC TTC TTC TTC TTC TTC
91226226 TTC TTCC TTC TTC TTCC TTC TTC TTC TTC
1 TTC TT-C TTC TTC TT-C TTC TTC TTC TTC
91226255 AAAGTCTAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
2 8 0.14
3 38 0.64
4 13 0.22
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:91226222 original size:13 final size:13
Alignment explanation
Indices: 91226206--91226254 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
91226196 CTTTTTTCTT
91226206 TCTTTCTTCTTCC
1 TCTTTCTTCTTCC
91226219 TCTTTTCTTCTT-C
1 TC-TTTCTTCTTCC
91226232 -C-TTCTTCTTCC
1 TCTTTCTTCTTCC
91226243 T-TCTTCTTCTTC
1 TCT-TTCTTCTTC
91226255 AAAGTCTAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
10 8 0.26
11 1 0.03
12 1 0.03
13 12 0.39
14 9 0.29
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TCTTTCTTCTTCC
Found at i:91226238 original size:10 final size:10
Alignment explanation
Indices: 91226223--91226251 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
91226213 TCTTCCTCTT
91226223 TTCTTCTTCC
1 TTCTTCTTCC
91226233 TTCTTCTTCC
1 TTCTTCTTCC
91226243 TTCTTCTTC
1 TTCTTCTTC
91226252 TTCAAAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TTCTTCTTCC
Found at i:91226350 original size:18 final size:19
Alignment explanation
Indices: 91226314--91226354 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
91226304 CGGTACTCTT
*
91226314 TCTTTTCTTCTCCTCTTTC
1 TCTTTTCCTCTCCTCTTTC
91226333 TCTTTTCCT-TCCT-TTT-
1 TCTTTTCCTCTCCTCTTTC
91226349 TCTTTT
1 TCTTTT
91226355 TTTCGAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 3 0.14
18 4 0.19
19 8 0.38
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (19 bp):
TCTTTTCCTCTCCTCTTTC
Found at i:91226356 original size:18 final size:16
Alignment explanation
Indices: 91226309--91226356 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
91226299 GATGCCGGTA
91226309 CTCTTTCTTTTCTTCTC
1 CTCTTTCTTTT-TTCTC
*
91226326 CTCTTTCTCTTTTCCTTC
1 CTCTTTCT-TTTTTC-TC
*
91226344 CTTTTTCTTTTTT
1 CTCTTTCTTTTTT
91226357 TCGAAACTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
CTCTTTCTTTTTTCTC
Found at i:91226821 original size:29 final size:29
Alignment explanation
Indices: 91226788--91226904 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
91226778 TGTAATTTTT
*
91226788 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
91226817 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
91226847 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
91226876 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
91226905 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 14 0.19
30 56 0.78
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:91226843 original size:30 final size:30
Alignment explanation
Indices: 91226803--91226904 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
91226793 ATTTAGGATT
*
91226803 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
91226833 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
91226863 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
91226893 AAAATGCAATTT
1 AAAATGAAATTT
91226905 TTATTTTTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.03
30 60 0.97
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:91226920 original size:15 final size:16
Alignment explanation
Indices: 91226900--91226936 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
91226890 GTCAAAATGC
91226900 AATTTTTATTTTTT-A
1 AATTTTTATTTTTTGA
*
91226915 AATTTTTTTTTTTTGA
1 AATTTTTATTTTTTGA
91226931 AATTTT
1 AATTTT
91226937 GAAAATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (16 bp):
AATTTTTATTTTTTGA
Found at i:91226927 original size:16 final size:16
Alignment explanation
Indices: 91226902--91226936 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
91226892 CAAAATGCAA
*
91226902 TTTTTATTTTTTAAAT
1 TTTTTATTTTTGAAAT
*
91226918 TTTTTTTTTTTGAAAT
1 TTTTTATTTTTGAAAT
91226934 TTT
1 TTT
91226937 GAAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTTATTTTTGAAAT
Found at i:91230494 original size:45 final size:45
Alignment explanation
Indices: 91230387--91230819 Score: 315
Period size: 45 Copynumber: 9.7 Consensus size: 45
91230377 CAAATTTTGG
* * * * **
91230387 CAAATCTTATCTTCCTGAAGTTACAGTGAAGCAGATTAAAG-TCG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
* **
91230431 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
* * *
91230476 CAAATCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATGA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
* * * * * **
91230521 CGAATCTTCTCTCCCTGAAGTTGCAGTGGGGCAGGTCGAAG-CCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
* * * * * * * *
91230565 CTAACCTTATCTCCC-AAAGTTACAGTGGAACGGGTTGAAG-TTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
* * *
91230608 CAAGTCTTATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
* * * * * *
91230653 CAAGTCTTGTTTCCCTGAAGTTACAGTGGAACAGATTGAACCTATAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA--GAT-AA
* * *
91230701 TCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA-A-AA
1 -CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
* * * * * * *
91230745 CAAGTCCTATCTCCCTGAAGTTACAGTGTAGCAAATTGAATATAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
* * *
91230790 CAAGTCTTATTTCCCTGGAGTTGCAGTGGA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGA
91230820 ACGTATTGAA
Statistics
Matches: 308, Mismatches: 68, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
41 25 0.08
42 2 0.01
43 35 0.11
44 70 0.23
45 141 0.46
46 1 0.00
47 2 0.01
48 2 0.01
49 3 0.01
50 2 0.01
51 25 0.08
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (45 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAA
Found at i:91230783 original size:92 final size:96
Alignment explanation
Indices: 91230612--91230784 Score: 228
Period size: 92 Copynumber: 1.8 Consensus size: 96
91230602 AAGTTACAAG
* * * *
91230612 TCTTATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAACAAGTCTTGTTTCCCTGAAGTTAC
1 TCTTATCTCCCTGAAGATGCAGTAGAGCAGACTGAAGATAACAAGTCCTATCTCCCTGAAGTTAC
*
91230677 AGTGGAACAGATTGAACCTATAAATCACAGA
66 AGTGGAACAAATTGAACCTATAAATCACAGA
* * *
91230708 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CA-A-AACAAGTCCTATCTCCCTGAAGTTAC
1 TCTTATCTCCCTGAAGATGCAGTAGAGCAGACTGAAGATAACAAGTCCTATCTCCCTGAAGTTAC
* *
91230769 AGTGTAGCAAATTGAA
66 AGTGGAACAAATTGAA
91230785 TATAGCAAGT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 36 0.54
93 1 0.01
94 1 0.01
95 1 0.01
96 28 0.42
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (96 bp):
TCTTATCTCCCTGAAGATGCAGTAGAGCAGACTGAAGATAACAAGTCCTATCTCCCTGAAGTTAC
AGTGGAACAAATTGAACCTATAAATCACAGA
Found at i:91232709 original size:15 final size:15
Alignment explanation
Indices: 91232689--91232718 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91232679 ATTTATTTAC
91232689 ATTATTATTACTATT
1 ATTATTATTACTATT
*
91232704 ATTATTATTTCTATT
1 ATTATTATTACTATT
91232719 TTTTCAACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTACTATT
Found at i:91233300 original size:27 final size:26
Alignment explanation
Indices: 91233270--91233331 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
91233260 TTTATTTAAC
*
91233270 ATATTATTTATTTGAAATTTGGTTTAT
1 ATATTATTTATTTCAAA-TTGGTTTAT
* *
91233297 ATATTGTTTTATTTCAAATTGTTTTAT
1 ATATT-ATTTATTTCAAATTGGTTTAT
*
91233324 ATTTTATT
1 ATATTATT
91233332 CATGTTAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 17 0.59
28 10 0.34
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (26 bp):
ATATTATTTATTTCAAATTGGTTTAT
Found at i:91236168 original size:21 final size:20
Alignment explanation
Indices: 91236113--91236168 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
91236103 ATACATACAT
*
91236113 TAATA-AATTAA-CATGAAT
1 TAATATAATTAAGCATGAAA
* *
91236131 TAATATAAAATATGCATGAAAA
1 TAATAT-AATTAAGCATG-AAA
91236153 TAATATAATTAAGCAT
1 TAATATAATTAAGCAT
91236169 AATTTCACAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.17
20 4 0.14
21 12 0.41
22 8 0.28
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
TAATATAATTAAGCATGAAA
Found at i:91237407 original size:32 final size:32
Alignment explanation
Indices: 91237371--91237435 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
91237361 TAACTAAAAC
*
91237371 TAATGGAGATTGACATCATCTTCCATTAATTT
1 TAATGGAAATTGACATCATCTTCCATTAATTT
91237403 TAATGGAAATTGACATCATCTTCCATTAATTT
1 TAATGGAAATTGACATCATCTTCCATTAATTT
91237435 T
1 T
91237436 CACAATATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (32 bp):
TAATGGAAATTGACATCATCTTCCATTAATTT
Found at i:91238641 original size:15 final size:16
Alignment explanation
Indices: 91238607--91238643 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
91238597 ATTTTTATCT
*
91238607 TTTTCTTTTTTACATA
1 TTTTATTTTTTACATA
91238623 -TTTATTTTTTA-ATA
1 TTTTATTTTTTACATA
91238637 TTTTATT
1 TTTTATT
91238644 ATACTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTATTTTTTACATA
Found at i:91240069 original size:14 final size:14
Alignment explanation
Indices: 91240050--91240077 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
91240040 ATCCCACCCC
91240050 AAATCAGATACAGA
1 AAATCAGATACAGA
91240064 AAATCAGATACAGA
1 AAATCAGATACAGA
91240078 TTTATCAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (14 bp):
AAATCAGATACAGA
Found at i:91245317 original size:47 final size:47
Alignment explanation
Indices: 91245248--91245725 Score: 724
Period size: 47 Copynumber: 10.1 Consensus size: 47
91245238 GAAATGATAG
91245248 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
91245295 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
91245342 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA--TATG-T--GA
* *
91245394 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
91245441 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
91245488 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
91245535 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91245582 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91245629 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
91245675 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91245722 TAAG
1 TAAG
91245726 TCCCGAAGGG
Statistics
Matches: 400, Mismatches: 25, Indels: 12
0.92 0.06 0.03
Matches are distributed among these distances:
46 40 0.10
47 309 0.77
49 5 0.01
50 5 0.01
52 41 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:91250225 original size:21 final size:20
Alignment explanation
Indices: 91250201--91250240 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
91250191 CTGCGACTAT
* *
91250201 TTTAGTTGTTCTCTTCTTCTC
1 TTTAATTGTTC-CTTATTCTC
91250222 TTTAATTGTTCCTTATTCT
1 TTTAATTGTTCCTTATTCT
91250241 TAGTTTAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.20, G:0.07, T:0.62
Consensus pattern (20 bp):
TTTAATTGTTCCTTATTCTC
Found at i:91252997 original size:3 final size:3
Alignment explanation
Indices: 91252991--91253033 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
91252981 AAAATACTAC
91252991 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
91253034 TTGATTGACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:91253745 original size:21 final size:21
Alignment explanation
Indices: 91253706--91253745 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91253696 TTTGATTTTT
**
91253706 TTCAGAATAAAAATTCTGAAA
1 TTCAGAATAAAAAAACTGAAA
*
91253727 TTCAGGATAAAAAAACTGA
1 TTCAGAATAAAAAAACTGA
91253746 TGTGACATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (21 bp):
TTCAGAATAAAAAAACTGAAA
Found at i:91257806 original size:2 final size:2
Alignment explanation
Indices: 91257799--91257836 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
91257789 GCTAACCTAA
*
91257799 CT CT CT CT CT CT CT CT CT CT CT AT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
91257837 AATATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.03, C:0.47, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:91258533 original size:29 final size:28
Alignment explanation
Indices: 91258471--91258533 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
91258461 TAAATGTGGA
*
91258471 TTTT-AAAAAATAAAAACTATTTAAAAT
1 TTTTAAAAAAATAAAAAATATTTAAAAT
* * *
91258498 ATATAAAAAAATAAAACAATATTTTAAAT
1 TTTTAAAAAAATAAAA-AATATTTAAAAT
91258527 TTTTAAA
1 TTTTAAA
91258534 TTAATTAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
27 2 0.07
28 11 0.39
29 15 0.54
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (28 bp):
TTTTAAAAAAATAAAAAATATTTAAAAT
Found at i:91260073 original size:9 final size:9
Alignment explanation
Indices: 91260059--91260136 Score: 50
Period size: 10 Copynumber: 8.1 Consensus size: 9
91260049 TATTATTTAA
91260059 TAATTTTTT
1 TAATTTTTT
91260068 TAA-TTTTT
1 TAATTTTTT
91260076 TAACTTTCTTT
1 TAA-TTT-TTT
91260087 ATATATTTTTT
1 -TA-ATTTTTT
*
91260098 AGAATTTTTT
1 -TAATTTTTT
* **
91260108 TGATTTTAA
1 TAATTTTTT
*
91260117 AAATTTTTT
1 TAATTTTTT
91260126 TGAATTTTTT
1 T-AATTTTTT
91260136 T
1 T
91260137 TGTAAGTTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 11
0.72 0.14 0.15
Matches are distributed among these distances:
8 8 0.15
9 13 0.25
10 18 0.34
11 8 0.15
12 5 0.09
13 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.04, T:0.68
Consensus pattern (9 bp):
TAATTTTTT
Found at i:91262128 original size:18 final size:19
Alignment explanation
Indices: 91262085--91262132 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
91262075 ACGCAACCAA
*
91262085 CAGACAAACAAACAACAAG
1 CAGAAAAACAAACAACAAG
* *
91262104 CAAAAAAACAAA-AAGAAG
1 CAGAAAAACAAACAACAAG
91262122 CAG-AAAACAAA
1 CAGAAAAACAAA
91262133 GAGCAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 8 0.32
18 7 0.28
19 10 0.40
ACGTcount: A:0.71, C:0.19, G:0.10, T:0.00
Consensus pattern (19 bp):
CAGAAAAACAAACAACAAG
Found at i:91267627 original size:19 final size:20
Alignment explanation
Indices: 91267595--91267636 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
91267585 TTTTTTTGTA
* *
91267595 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
91267615 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
91267634 TTC
1 TTC
91267637 GCGAAAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:91275661 original size:66 final size:66
Alignment explanation
Indices: 91275589--91275754 Score: 212
Period size: 66 Copynumber: 2.5 Consensus size: 66
91275579 CATTCATACA
* *
91275589 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAGTTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
*
91275654 T
66 C
* * * * *
91275655 TCATTCATAACACGTTTAATTAAGAGCATTTAATTCATTTCGATCATACCATCCTAATTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
91275720 C
66 C
* *
91275721 ACATTCAT--CACATCTAGTTAAGG-GCATTTGATTC
1 TCATTCATAACACATCTAATT-AGGAGCATTTGATTC
91275755 GACCATAACA
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
64 18 0.21
65 2 0.02
66 65 0.76
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (66 bp):
TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATACCATCCTAATTATTTGA
C
Found at i:91276336 original size:44 final size:45
Alignment explanation
Indices: 91276288--91276388 Score: 132
Period size: 45 Copynumber: 2.3 Consensus size: 45
91276278 TAGATCTCCT
* * * * * *
91276288 TGAAGTTTCAGTGGAGTTGATTGAAGTCA-CAAGTCTTATCTCTC
1 TGAAGTTGCAGTGGAGTAGACTCAAGACAGCAAATCTTATCTCTC
*
91276332 TGAAGTTGCAGTGGAGTAGACTCATGACAGCAAATCTTATCTCTC
1 TGAAGTTGCAGTGGAGTAGACTCAAGACAGCAAATCTTATCTCTC
91276377 TGAAGTTGCAGT
1 TGAAGTTGCAGT
91276389 AGAGCAGATT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 23 0.47
45 26 0.53
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (45 bp):
TGAAGTTGCAGTGGAGTAGACTCAAGACAGCAAATCTTATCTCTC
Found at i:91277132 original size:15 final size:14
Alignment explanation
Indices: 91277072--91277134 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 14
91277062 ACAGACAAAC
* *
91277072 AAACAACAAGCAAA
1 AAACAAAAAGAAAA
91277086 AAACAAAAAGAAGTAGA
1 AAACAAAAAGAA--A-A
*
91277103 AAACAAAGAGCAAAA
1 AAACAAAAAG-AAAA
91277118 AAACAAGAAAGAAAA
1 AAACAA-AAAGAAAA
91277133 AA
1 AA
91277135 TAGATAATAG
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
14 10 0.25
15 13 0.32
16 5 0.12
17 10 0.25
18 2 0.05
ACGTcount: A:0.75, C:0.11, G:0.13, T:0.02
Consensus pattern (14 bp):
AAACAAAAAGAAAA
Found at i:91285531 original size:16 final size:16
Alignment explanation
Indices: 91285506--91285541 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
91285496 AACACAACCC
*
91285506 TCTCTGAAAACATTTT
1 TCTCTAAAAACATTTT
91285522 TCTCTAAAAACATTTT
1 TCTCTAAAAACATTTT
91285538 TCTC
1 TCTC
91285542 CTTTGCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (16 bp):
TCTCTAAAAACATTTT
Found at i:91289262 original size:29 final size:28
Alignment explanation
Indices: 91289145--91289290 Score: 231
Period size: 28 Copynumber: 5.1 Consensus size: 28
91289135 CACATACCTG
91289145 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCACTAGGCCCAATCACATT
*
91289173 TATATGGCCCACTAGGCCCAGTCACATT
1 TATATGGCCCACTAGGCCCAATCACATT
91289201 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCACTAGGCCCAATCACATT
* *
91289229 TATATAGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCACTAGGCCC-AATCACATT
91289258 TATATGGCCCA-TCAGGCCCAATTCACATT
1 TATATGGCCCACT-AGGCCCAA-TCACATT
91289287 TATA
1 TATA
91289291 GTCATGCTCA
Statistics
Matches: 110, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
28 74 0.67
29 36 0.33
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
TATATGGCCCACTAGGCCCAATCACATT
Found at i:91290312 original size:4 final size:4
Alignment explanation
Indices: 91290303--91290333 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
91290293 TTTATACTAA
91290303 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
91290334 ATACACCTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:91297593 original size:3 final size:3
Alignment explanation
Indices: 91297587--91297627 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
91297577 TCATCACCGC
* * *
91297587 CAT CAT CAC CAT CAT CAT CGT CGT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
91297628 CTTTCTCCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.29, C:0.37, G:0.05, T:0.29
Consensus pattern (3 bp):
CAT
Found at i:91297602 original size:12 final size:12
Alignment explanation
Indices: 91297574--91297627 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
91297564 TGATTCACTG
*
91297574 TCATCATCACCG
1 TCATCATCACCA
*
91297586 CCATCATCACCA
1 TCATCATCACCA
** *
91297598 TCATCATCGTCG
1 TCATCATCACCA
*
91297610 TCATCATCATCA
1 TCATCATCACCA
91297622 TCATCA
1 TCATCA
91297628 CTTTCTCCAC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.28, C:0.39, G:0.06, T:0.28
Consensus pattern (12 bp):
TCATCATCACCA
Found at i:91299023 original size:72 final size:72
Alignment explanation
Indices: 91298686--91298997 Score: 405
Period size: 72 Copynumber: 4.3 Consensus size: 72
91298676 AAAATCATAT
* * ** *
91298686 ATAAACAATTATTGATAAAAATA-ATTTA-GTATAAATAAGTAGAACATAAATTTAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
91298749 AATCAAAC
65 AACCAAAC
* ** * * *
91298757 ATAAACAATTATTGATAAAACTAGCCCTA-AGCATAAATAATTAGACCATAAATTCAGTATCCAA
1 ATAAACAACTATTGATAAAACTAG-ATTACA-CATAAATAAGTAGAACATAAATTCAATATCCAA
* *
91298821 AGACCAAAT
64 AAACCAAAC
* *
91298830 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAATATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
91298895 ACCAAAC
66 ACCAAAC
* *
91298902 ATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTTAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
91298967 ACCAAAC
66 ACCAAAC
*
91298974 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
91298998 TTTAGCATTG
Statistics
Matches: 209, Mismatches: 28, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
71 22 0.11
72 130 0.62
73 57 0.27
ACGTcount: A:0.54, C:0.14, G:0.06, T:0.25
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:91299445 original size:18 final size:18
Alignment explanation
Indices: 91299422--91299474 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
91299412 CTTTTCCATC
*
91299422 AATGTGAACATCATTTGA
1 AATGTGAACATCATTTAA
*
91299440 AATGTGAACACCATTTAA
1 AATGTGAACATCATTTAA
91299458 AATGTGAACATCATTTA
1 AATGTGAACATCATTTA
91299475 TCACATTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (18 bp):
AATGTGAACATCATTTAA
Found at i:91302413 original size:34 final size:35
Alignment explanation
Indices: 91302370--91302436 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
91302360 GTATTAAAAA
91302370 TTTTGTAAAATTTCTGT-AAAATCAAACAATCAAT
1 TTTTGTAAAATTTCTGTAAAAATCAAACAATCAAT
*
91302404 TTTTGTAAAATTTCTGTAAAAATCAAATAATCA
1 TTTTGTAAAATTTCTGTAAAAATCAAACAATCA
91302437 GAAAACAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (35 bp):
TTTTGTAAAATTTCTGTAAAAATCAAACAATCAAT
Found at i:91304334 original size:21 final size:21
Alignment explanation
Indices: 91304310--91304369 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 21
91304300 CAAAAGGTTA
*
91304310 ACAGAATGTCACAAAAGCTAT
1 ACAGAATGCCACAAAAGCTAT
**
91304331 ACAGAATACGCCACAATGGCTAT
1 ACAGAAT--GCCACAAAAGCTAT
91304354 ACAGAATGCCACAAAA
1 ACAGAATGCCACAAAA
91304370 AAACTCCAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 14 0.44
23 18 0.56
ACGTcount: A:0.47, C:0.23, G:0.15, T:0.15
Consensus pattern (21 bp):
ACAGAATGCCACAAAAGCTAT
Found at i:91304562 original size:22 final size:22
Alignment explanation
Indices: 91304534--91304575 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
91304524 ATCGGAGTTG
91304534 TCATATTAAAACTAGTGTTTTT
1 TCATATTAAAACTAGTGTTTTT
*
91304556 TCATATTAAAACTCGTGTTT
1 TCATATTAAAACTAGTGTTT
91304576 ATTGTCCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.48
Consensus pattern (22 bp):
TCATATTAAAACTAGTGTTTTT
Found at i:91305701 original size:21 final size:20
Alignment explanation
Indices: 91305673--91305711 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
91305663 AAATAGGAGG
*
91305673 TCTCCTAACCCTATCTTCAT
1 TCTCCTAAACCTATCTTCAT
91305693 TCTCACTAAACCTATCTTC
1 TCTC-CTAAACCTATCTTC
91305712 CTCTCCTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.38
Consensus pattern (20 bp):
TCTCCTAAACCTATCTTCAT
Found at i:91308257 original size:13 final size:13
Alignment explanation
Indices: 91308239--91308265 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91308229 AAAGATCTAC
91308239 TTCTAATTACTAT
1 TTCTAATTACTAT
91308252 TTCTAATTACTAT
1 TTCTAATTACTAT
91308265 T
1 T
91308266 AAAATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.56
Consensus pattern (13 bp):
TTCTAATTACTAT
Found at i:91310481 original size:46 final size:46
Alignment explanation
Indices: 91310429--91310518 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
91310419 CTTTTTAATG
* *
91310429 AATGTTTATATGAATTCTCAATTAATTTCCGCATTATATATGATTC
1 AATGTTTATATGAATTCTCAATTAATTTCCACATCATATATGATTC
91310475 AATGTTTATATGAATTCTCAATTAATTTCCACATCATATATGAT
1 AATGTTTATATGAATTCTCAATTAATTTCCACATCATATATGAT
91310519 CCAAGATGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.44
Consensus pattern (46 bp):
AATGTTTATATGAATTCTCAATTAATTTCCACATCATATATGATTC
Found at i:91313508 original size:23 final size:25
Alignment explanation
Indices: 91313472--91313518 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
91313462 TGATCGGGGT
* *
91313472 AAAAAAATTAAG-AATTAAAGTAAA
1 AAAAAAAGTAAGAAACTAAAGTAAA
91313496 AAAAAAAGT-AGAAACTAAAGTAA
1 AAAAAAAGTAAGAAACTAAAGTAA
91313519 TATTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.17
Consensus pattern (25 bp):
AAAAAAAGTAAGAAACTAAAGTAAA
Found at i:91316997 original size:21 final size:21
Alignment explanation
Indices: 91316973--91317028 Score: 94
Period size: 21 Copynumber: 2.6 Consensus size: 21
91316963 TATGAAGCAA
91316973 CCCCATACCCCACTACAACAG
1 CCCCATACCCCACTACAACAG
91316994 CCCCATACCCCACTACAACAG
1 CCCCATACCCCACTACAACAG
*
91317015 TCCCATACCTCCAC
1 CCCCATACC-CCAC
91317029 AGTCCTCGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 29 0.88
22 4 0.12
ACGTcount: A:0.30, C:0.54, G:0.04, T:0.12
Consensus pattern (21 bp):
CCCCATACCCCACTACAACAG
Found at i:91318349 original size:21 final size:20
Alignment explanation
Indices: 91318323--91318361 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
91318313 AACCCATTAA
91318323 ACCCCAAAACCCAACTAACCC
1 ACCCCAAAACCCAA-TAACCC
91318344 ACCCCAAAACCCAATAAC
1 ACCCCAAAACCCAATAAC
91318362 TAAACCTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.49, G:0.00, T:0.05
Consensus pattern (20 bp):
ACCCCAAAACCCAATAACCC
Found at i:91321277 original size:33 final size:33
Alignment explanation
Indices: 91321226--91321290 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
91321216 TTTCATATAG
*
91321226 TATTATCTTTTTTTACTATTA-TATTTATTATTA
1 TATTATCTTTTTTCACTATTATTA-TTATTATTA
91321259 TATTAT-TTATTTTCACTATTATTATTATTATT
1 TATTATCTT-TTTTCACTATTATTATTATTATT
91321291 TTCATCATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 2 0.07
33 25 0.86
34 2 0.07
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (33 bp):
TATTATCTTTTTTCACTATTATTATTATTATTA
Found at i:91321281 original size:16 final size:15
Alignment explanation
Indices: 91321247--91321289 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
91321237 TTTACTATTA
91321247 TATTTATTATTATAT
1 TATTTATTATTATAT
91321262 TATTTATT-TTCACTAT
1 TATTTATTATT-A-TAT
91321278 TA-TTATTATTAT
1 TATTTATTATTAT
91321290 TTTCATCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.12
15 15 0.60
16 7 0.28
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTTATTATTATAT
Found at i:91321289 original size:21 final size:21
Alignment explanation
Indices: 91321254--91321304 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
91321244 TTATATTTAT
91321254 TATTA-TATTATTTATTTTCA
1 TATTATTATTATTTATTTTCA
91321274 CTATTATTATTA-TTATTTTCA
1 -TATTATTATTATTTATTTTCA
91321295 TCATTATTAT
1 T-ATTATTAT
91321305 ACATATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.04
21 22 0.79
22 5 0.18
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (21 bp):
TATTATTATTATTTATTTTCA
Found at i:91321302 original size:33 final size:33
Alignment explanation
Indices: 91321235--91321299 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
91321225 GTATTATCTT
* *
91321235 TTTTTACTATTATATTTATTATTATATTATTTA
1 TTTTCACTATTATATTTATTATTATATCATTTA
*
91321268 TTTTCACTATTAT-TATTATTATTTTCATCATT
1 TTTTCACTATTATAT-TTATTATTAT-ATCATT
91321300 ATTATACATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 1 0.04
33 21 0.78
34 5 0.19
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.65
Consensus pattern (33 bp):
TTTTCACTATTATATTTATTATTATATCATTTA
Found at i:91327468 original size:50 final size:51
Alignment explanation
Indices: 91327390--91327489 Score: 148
Period size: 50 Copynumber: 2.0 Consensus size: 51
91327380 CAACATCGGC
* *
91327390 GTCTTTAGTGGGCTGCCCTGATCAACCCC-AAATCGCTCGATTTTGGCAAT
1 GTCTTTAGTAGGATGCCCTGATCAACCCCAAAATCGCTCGATTTTGGCAAT
* * *
91327440 GTCTTTAGTAGGATGCCCTGGTCCACCCCAAAATGGCTCGATTTTGGCAA
1 GTCTTTAGTAGGATGCCCTGATCAACCCCAAAATCGCTCGATTTTGGCAA
91327490 CACTAGTACA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 25 0.57
51 19 0.43
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (51 bp):
GTCTTTAGTAGGATGCCCTGATCAACCCCAAAATCGCTCGATTTTGGCAAT
Found at i:91345210 original size:23 final size:24
Alignment explanation
Indices: 91345184--91345231 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
91345174 TATTTCAAAC
*
91345184 TATTATCCATTTTAAA-TTTTATA
1 TATTATCCATTTTAAACTGTTATA
**
91345207 TATTATTTATTTTAAACTGTTATA
1 TATTATCCATTTTAAACTGTTATA
91345231 T
1 T
91345232 GTATTATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (24 bp):
TATTATCCATTTTAAACTGTTATA
Found at i:91345236 original size:26 final size:23
Alignment explanation
Indices: 91345111--91345408 Score: 142
Period size: 26 Copynumber: 12.1 Consensus size: 23
91345101 TCATACATTT
*
91345111 TTTATTTTAAATTGTTTTATTATTA
1 TTTATTTTAAATT-TTATA-TATTA
* * *
91345136 TTTACTTTAAGTTTTTTCACATATTA
1 TTTATTTTAA--ATTTT-ATATATTA
* *
91345162 TGTATTTTAAACTATTTCAAACTATTA
1 TTTATTTTAAA-T-TTT-ATA-TATTA
**
91345189 TCCATTTTAAATTTTATATATTA
1 TTTATTTTAAATTTTATATATTA
*
91345212 TTTATTTTAAACTGTTATATGTATTA
1 TTTATTTTAAA-T-TT-TATATATTA
*
91345238 TTTATTTTTAAATTGTTTTGTATATTA
1 TTTA-TTTTAAA---TTTTATATATTA
* * *
91345265 TTTATTTTAAATTTATTTTTACATAA
1 TTTATTTTAAA--T-TTTATATATTA
*
91345291 TTTATTTTAAACTTT-TATA-TA
1 TTTATTTTAAATTTTATATATTA
* *
91345312 -TTATTTGAAATTGTCTTATATATTT
1 TTTATTTTAAA-T-T-TTATATATTA
91345337 TTTA-TTT---TTTTATATATTA
1 TTTATTTTAAATTTTATATATTA
*
91345356 TTTATTTTAAACTTTTTGTATATTA
1 TTTATTTTAAA--TTTTATATATTA
* *
91345381 TTTACTTTAATTTTTTTATATATTA
1 TTTATTTTAA--ATTTTATATATTA
91345406 TTT
1 TTT
91345409 TGTTTCATTT
Statistics
Matches: 213, Mismatches: 33, Indels: 54
0.71 0.11 0.18
Matches are distributed among these distances:
19 13 0.06
20 13 0.06
21 2 0.01
22 4 0.02
23 19 0.09
24 7 0.03
25 54 0.25
26 63 0.30
27 35 0.16
28 2 0.01
29 1 0.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (23 bp):
TTTATTTTAAATTTTATATATTA
Found at i:91345254 original size:27 final size:25
Alignment explanation
Indices: 91345111--91345277 Score: 117
Period size: 27 Copynumber: 6.5 Consensus size: 25
91345101 TCATACATTT
*
91345111 TTTATTTTAAATTGTTTTATTATTA
1 TTTATTTTAAATTGTTATATTATTA
* * * *
91345136 TTTACTTTAAGTT-TTTTCACATATTA
1 TTTATTTTAAATTGTTAT-A-TTATTA
* * *
91345162 TGTATTTTAAACTAT-TTCAAACTATTA
1 TTTATTTTAAA-T-TGTT-ATATTATTA
**
91345189 TCCATTTTAAATT-TTATA-TATTA
1 TTTATTTTAAATTGTTATATTATTA
*
91345212 TTTATTTTAAACTGTTATATGTATTA
1 TTTATTTTAAATTGTTATAT-TATTA
* *
91345238 TTTATTTTTAAATTGTTTTGTATATTA
1 TTTA-TTTTAAATTGTTATAT-TATTA
91345265 TTTATTTTAAATT
1 TTTATTTTAAATT
91345278 TATTTTTACA
Statistics
Matches: 114, Mismatches: 19, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
23 15 0.13
24 11 0.10
25 15 0.13
26 32 0.28
27 37 0.32
28 4 0.04
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (25 bp):
TTTATTTTAAATTGTTATATTATTA
Found at i:91345349 original size:19 final size:19
Alignment explanation
Indices: 91345303--91345363 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
91345293 TATTTTAAAC
*
91345303 TTTTATATATTATTTGAAATTG
1 TTTTATATATTATTT---ATTT
* *
91345325 TCTTATATATTTTTTATTT
1 TTTTATATATTATTTATTT
91345344 TTTTATATATTATTTATTT
1 TTTTATATATTATTTATTT
91345363 T
1 T
91345364 AAACTTTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 21 0.62
22 13 0.38
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTATATATTATTTATTT
Found at i:91345355 original size:91 final size:92
Alignment explanation
Indices: 91345235--91345408 Score: 226
Period size: 91 Copynumber: 1.9 Consensus size: 92
91345225 GTTATATGTA
* * * * *
91345235 TTATTTATTTTTAAATTGTTTTGTATATTATTTATTTTAAATTTATTTTTACATAATTTATTTTA
1 TTATATATTTTTAAATTGTTTTATATATTATTTATTTTAAACTT-TTTGTACATAATTTACTTTA
91345300 A-ACTTTTATATATTATTTGAAATTGTC
65 ATACTTTTATATATTATTTGAAATTGTC
* * * *
91345327 TTATATATTTTT-TATTTTTTTATATATTATTTATTTTAAACTTTTTGTATATTATTTACTTTAA
1 TTATATATTTTTAAATTGTTTTATATATTATTTATTTTAAACTTTTTGTACATAATTTACTTTAA
**
91345391 TTTTTTTATATATTATTT
66 TACTTTTATATATTATTT
91345409 TGTTTCATTT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
90 17 0.24
91 42 0.60
92 11 0.16
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (92 bp):
TTATATATTTTTAAATTGTTTTATATATTATTTATTTTAAACTTTTTGTACATAATTTACTTTAA
TACTTTTATATATTATTTGAAATTGTC
Done.