Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 282 of 356
Found at i:91880729 original size:52 final size:52
Alignment explanation
Indices: 91880653--91880872 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
91880643 TAGCTAAAGC
* *
91880653 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
91880706 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
91880758 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
91880804 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
91880856 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
91880873 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:91880775 original size:98 final size:98
Alignment explanation
Indices: 91880610--91880878 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
91880600 TAAGTGTAGC
* * *
91880610 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
91880675 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
91880709 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
91880774 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
91880807 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
91880872 GATCAGA
66 GATCAGA
91880879 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:91884835 original size:33 final size:33
Alignment explanation
Indices: 91884786--91884858 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
91884776 GAACAAGAAG
91884786 ATAGAAAATAGAGTTCTCGAACAAGACATAGGT
1 ATAGAAAATAGAGTTCTCGAACAAGACATAGGT
* * *
91884819 ATAGAAAATGGTGTTCTTGAACAAGACATAGGT
1 ATAGAAAATAGAGTTCTCGAACAAGACATAGGT
*
91884852 AAAGAAA
1 ATAGAAA
91884859 GGTTTAATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.47, C:0.10, G:0.22, T:0.22
Consensus pattern (33 bp):
ATAGAAAATAGAGTTCTCGAACAAGACATAGGT
Found at i:91886360 original size:27 final size:28
Alignment explanation
Indices: 91886323--91886384 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
91886313 TGAAAAAAAT
*
91886323 AAAAATTTATTCT-AAAA-GAGAATAAA
1 AAAAATTTATTCTAAAAATAAGAATAAA
91886349 AAAAATTCTATTCTAAAAATAAGAATAAA
1 AAAAATT-TATTCTAAAAATAAGAATAAA
91886378 ATAAAAT
1 A-AAAAT
91886385 AAAAGAGAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 7 0.23
27 6 0.19
28 4 0.13
29 9 0.29
30 5 0.16
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (28 bp):
AAAAATTTATTCTAAAAATAAGAATAAA
Found at i:91886378 original size:26 final size:26
Alignment explanation
Indices: 91886320--91886378 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
91886310 AAATGAAAAA
*
91886320 AATAAAAATTTATTCTAAAAGAGAAT
1 AATAAAAATTTATTCTAAAAGAGAAG
* *
91886346 AAAAAAAATTCTATTCTAAAA-ATAAG
1 AATAAAAATT-TATTCTAAAAGAGAAG
91886372 AATAAAA
1 AATAAAA
91886379 TAAAATAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (26 bp):
AATAAAAATTTATTCTAAAAGAGAAG
Found at i:91887868 original size:21 final size:21
Alignment explanation
Indices: 91887824--91887874 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
91887814 ATTGCCTTTC
*
91887824 TCCATCTTCCATCGAATCTTTT
1 TCCATCTTCCATC-AATATTTT
91887846 TCCATCTCTCCAT-AATATTTT
1 TCCATCT-TCCATCAATATTTT
*
91887867 TCTATCTT
1 TCCATCTT
91887875 GATTATGTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 13 0.50
22 7 0.27
23 5 0.19
ACGTcount: A:0.20, C:0.29, G:0.02, T:0.49
Consensus pattern (21 bp):
TCCATCTTCCATCAATATTTT
Found at i:91901010 original size:2 final size:2
Alignment explanation
Indices: 91901003--91901038 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
91900993 CCATTATCTA
91901003 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
91901039 GCCAAAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:91909022 original size:16 final size:18
Alignment explanation
Indices: 91908995--91909027 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
91908985 TAGAATTTGG
91908995 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
91909012 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
91909028 GTTAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:91910196 original size:29 final size:30
Alignment explanation
Indices: 91910135--91910191 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
91910125 TTAATGAAGT
*
91910135 TTAGCAAGTTCAATGGGGTAAACAAAAAGC
1 TTAGCAAGTTCAACGGGGTAAACAAAAAGC
* * *
91910165 TTAGTAAGTTCGACGGGTTAAACAAAA
1 TTAGCAAGTTCAACGGGGTAAACAAAA
91910192 TCTTACCGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (30 bp):
TTAGCAAGTTCAACGGGGTAAACAAAAAGC
Found at i:91910478 original size:19 final size:20
Alignment explanation
Indices: 91910451--91910512 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
91910441 CAAATACGCC
91910451 AACAGAAGCTCGAA-AGCTG
1 AACAGAAGCTCGAAGAGCTG
* *
91910470 AATAGAAGCTCATAAGAGCTG
1 AACAGAAGCTC-GAAGAGCTG
*
91910491 AACAAAAGCTCGTAAGAGCTG
1 AACAGAAGCTCG-AAGAGCTG
91910512 A
1 A
91910513 TCCACCCAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 10 0.29
20 2 0.06
21 23 0.66
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (20 bp):
AACAGAAGCTCGAAGAGCTG
Found at i:91911991 original size:20 final size:20
Alignment explanation
Indices: 91911966--91912012 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
91911956 AGGGGCACAC
91911966 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
91911986 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAT
91912006 GCCCGTG
1 GCCCGTG
91912013 AAGGCAGCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.09, C:0.32, G:0.40, T:0.19
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGGACAT
Found at i:91917523 original size:41 final size:41
Alignment explanation
Indices: 91917478--91917732 Score: 323
Period size: 41 Copynumber: 6.2 Consensus size: 41
91917468 AGCAATTACG
*
91917478 CCGCTAAAAACTAGAGCATTAGCGGCGCTTTCGGTAAAACA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACA
** *
91917519 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCATTAAAACG
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACA
* * * * **
91917560 CCACTAAGAGCCAAAGCATTAGCGGCGCTTTCTATAAAACGA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAAC-A
* *
91917602 -CGCTAAAAACCAGAGCATTAGCGACGCTTTAGGTAAAACA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACA
* * * * *
91917642 CTGCTAAATACCAGAGTATTAGTGGCGCTTTCGGTAAAACG
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACA
* *
91917683 CCGCTAAAAACCAGAGCATTAGCGGCTCTTTCGGTAAAACG
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACA
91917724 CCGCTAAAA
1 CCGCTAAAA
91917733 GTCATATAAC
Statistics
Matches: 181, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
40 1 0.01
41 180 0.99
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.20
Consensus pattern (41 bp):
CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACA
Found at i:91917920 original size:14 final size:14
Alignment explanation
Indices: 91917898--91917949 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
91917888 TTAATTATCA
*
91917898 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
91917912 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
91917926 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
91917940 TTAAGGTTTA
1 TTATGGTTTA
91917950 GGAGTTAATT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:91918007 original size:14 final size:15
Alignment explanation
Indices: 91917982--91918010 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91917972 TTTATGATGA
91917982 ATTATGGGTTTAGGG
1 ATTATGGGTTTAGGG
91917997 ATTAT-GGTTTAGGG
1 ATTATGGGTTTAGGG
91918011 TTGGAGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (15 bp):
ATTATGGGTTTAGGG
Found at i:91918039 original size:7 final size:7
Alignment explanation
Indices: 91918029--91918054 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91918019 TAAGGTGTAA
91918029 GGGTTTG
1 GGGTTTG
91918036 GGGTTTG
1 GGGTTTG
91918043 GGGTTTG
1 GGGTTTG
91918050 GGGTT
1 GGGTT
91918055 AAGGGTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (7 bp):
GGGTTTG
Found at i:91918060 original size:14 final size:14
Alignment explanation
Indices: 91918026--91918061 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
91918016 GTTTAAGGTG
91918026 TAAGGGTTTGGGGT
1 TAAGGGTTTGGGGT
**
91918040 TTGGGGTTTGGGGT
1 TAAGGGTTTGGGGT
91918054 TAAGGGTT
1 TAAGGGTT
91918062 AAGGGTTTAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.50, T:0.39
Consensus pattern (14 bp):
TAAGGGTTTGGGGT
Found at i:91922629 original size:40 final size:40
Alignment explanation
Indices: 91922559--91922733 Score: 264
Period size: 40 Copynumber: 4.4 Consensus size: 40
91922549 AAGCCAAGTA
* * * * *
91922559 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
91922598 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
91922638 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
91922678 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
91922718 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
91922734 TGGTTATCAT
Statistics
Matches: 126, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.10
40 114 0.90
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91928669 original size:39 final size:40
Alignment explanation
Indices: 91928574--91928836 Score: 310
Period size: 40 Copynumber: 6.7 Consensus size: 40
91928564 TTGAATGATG
*
91928574 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
91928612 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
91928653 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
91928692 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
91928731 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
91928771 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
91928810 AACCGGGCTATGTCTCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
91928837 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 12, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 93 0.46
40 98 0.48
41 11 0.05
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:91928829 original size:80 final size:78
Alignment explanation
Indices: 91928575--91928836 Score: 302
Period size: 79 Copynumber: 3.3 Consensus size: 78
91928565 TGAATGATGT
* * *
91928575 CCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-ATCCGGGCTAAG-CCCGAAGGCAT
*
91928636 TTGTGCGAGA-TACTAATT
62 TTGTGCGA-ATTACTAA-A
*
91928654 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGT
*
91928718 GCGAGTTACTAAA
66 GCGAATTACTAAA
* * *
91928731 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTT
91928796 GTGCGAATTACTATAA
64 GTGCGAATTACTA-AA
* *
91928812 CCGGGCTATGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
91928837 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
78 42 0.26
79 58 0.36
80 57 0.36
81 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGT
GCGAATTACTAAA
Found at i:91928854 original size:80 final size:77
Alignment explanation
Indices: 91928575--91928869 Score: 271
Period size: 79 Copynumber: 3.7 Consensus size: 77
91928565 TGAATGATGT
* * **
91928575 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTA-ATCCGGGTTAAG-TCCCGAAGGCATT
*
91928637 TGTGCGAGA-TACTAATT
62 TGTGCGA-ATTACTAA-A
* *
91928654 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAA-TCCGGGTTAAGTCCCGAAGGCATTTG
*
91928717 TGCGAGTTACTAAA
64 TGCGAATTACTAAA
* *
91928731 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACT-AATCCGGGTTAAGTCCCGAAGGCATTT
91928796 GTGCGAATTACTATAA
63 GTGCGAATTACTA-AA
* * ** * *
91928812 CCGGGCTATGTCTCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTA-ATCCGGGTTAAGTCCCGAAGG
91928870 TACGTGATTT
Statistics
Matches: 185, Mismatches: 19, Indels: 24
0.81 0.08 0.11
Matches are distributed among these distances:
78 43 0.23
79 75 0.41
80 65 0.35
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAATTACTAAA
Found at i:91941750 original size:43 final size:43
Alignment explanation
Indices: 91941688--91941787 Score: 148
Period size: 43 Copynumber: 2.3 Consensus size: 43
91941678 AATTTATGAC
*
91941688 CTTTAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGAGT
1 CTTTAGTGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATG-GT
* * *
91941732 -TTTAGTGGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCATGTT
1 CTTTAGTGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGT
91941774 CTTTAGTGGCGTTT
1 CTTTAGTGGCGTTT
91941788 TTTACAGCGC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.02
43 50 0.98
ACGTcount: A:0.21, C:0.14, G:0.33, T:0.32
Consensus pattern (43 bp):
CTTTAGTGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCATGGT
Found at i:91944516 original size:46 final size:47
Alignment explanation
Indices: 91944440--91944534 Score: 129
Period size: 46 Copynumber: 2.0 Consensus size: 47
91944430 ATTGTCACAT
* *
91944440 ATCACACACCGAAGCCATAGCCCCGCTATGGTCTTACACGG-ATCAC
1 ATCACACACCGAAGCCATAGCCCAGATATGGTCTTACACGGAATCAC
* * * *
91944486 ATCACACACCGATGTCATATCCCAGATATGGTCTTATACGGAATCAC
1 ATCACACACCGAAGCCATAGCCCAGATATGGTCTTACACGGAATCAC
91944533 AT
1 AT
91944535 TATCATGTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 35 0.83
47 7 0.17
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.22
Consensus pattern (47 bp):
ATCACACACCGAAGCCATAGCCCAGATATGGTCTTACACGGAATCAC
Found at i:91944569 original size:53 final size:51
Alignment explanation
Indices: 91944481--91944630 Score: 133
Period size: 53 Copynumber: 2.9 Consensus size: 51
91944471 TCTTACACGG
* * * *
91944481 ATCACATCACACACCGATGTCATATCCCAGA-TATGGTCTTATACGGAATCACATT
1 ATCACAT--CACACCGATGCCATAGCCTA-ACTATGGTCTTATACGGAA-AACA-T
** *
91944536 ATCATGTCACACTGATGCCATAGCCTAACTATGGTCTTATACGAGAAAACAT
1 ATCACATCACACCGATGCCATAGCCTAACTATGGTCTTATACG-GAAAACAT
** * *
91944588 ATCACATTGCACCGATGCCATAGCCTAGCTAT-GTCTTAAACGG
1 ATCACATCACACCGATGCCATAGCCTAACTATGGTCTTATACGG
91944631 GCGCACATAT
Statistics
Matches: 79, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
50 1 0.01
51 9 0.11
52 28 0.35
53 33 0.42
54 3 0.04
55 5 0.06
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (51 bp):
ATCACATCACACCGATGCCATAGCCTAACTATGGTCTTATACGGAAAACAT
Found at i:91955322 original size:46 final size:46
Alignment explanation
Indices: 91955269--91955360 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
91955259 GAAATAGAGT
91955269 AAGCTTTATAGCTTAGTAAGCCCATATAATTCAGAATTAAACTTAC
1 AAGCTTTATAGCTTAGTAAGCCCATATAATTCAGAATTAAACTTAC
91955315 AAGCTTTATAGCTTAGTAAGCCCATATAATTCAGAATTAAACTTAC
1 AAGCTTTATAGCTTAGTAAGCCCATATAATTCAGAATTAAACTTAC
91955361 CATTTATACA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (46 bp):
AAGCTTTATAGCTTAGTAAGCCCATATAATTCAGAATTAAACTTAC
Found at i:91957977 original size:105 final size:102
Alignment explanation
Indices: 91957857--91958054 Score: 256
Period size: 105 Copynumber: 1.9 Consensus size: 102
91957847 ACTCTCGTAA
*
91957857 TGCCATAACCTAGTTATGGTCTTATCA-TCAAGATACCATAGCCCAACTATGGTCTTACACTTAT
1 TGCCATAACCTAGTTATGATCTTATCACTCAA-ATACCATAGCCCAACTATGGTCTTACACTTA-
* *
91957921 ACACATACTGCTATAGTCCAACCATGGTCTTACGTTCATGG
64 ACAC-T-CTCCCATAGTCCAACCATGGTCTTACGTTCATGG
* * * *
91957962 TGCCATAA-CTCAGTTATGATCTTTTCACTGAAATGCCATAGCCCAACTATGGTCTTACATTTAA
1 TGCCATAACCT-AGTTATGATCTTATCACTCAAATACCATAGCCCAACTATGGTCTTACACTTAA
* *
91958026 CACTTTCCCATGGTCCAACCATGGTCTTA
65 CACTCTCCCATAGTCCAACCATGGTCTTA
91958055 TCTGTCAAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
102 21 0.26
103 1 0.01
104 6 0.07
105 51 0.62
106 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (102 bp):
TGCCATAACCTAGTTATGATCTTATCACTCAAATACCATAGCCCAACTATGGTCTTACACTTAAC
ACTCTCCCATAGTCCAACCATGGTCTTACGTTCATGG
Found at i:91966290 original size:21 final size:20
Alignment explanation
Indices: 91966261--91966306 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
91966251 CGAAATGCAA
91966261 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
91966282 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
91966302 T-AACC
1 TCAACC
91966307 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:91967156 original size:22 final size:22
Alignment explanation
Indices: 91967130--91967173 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
91967120 GAAAATAATC
*
91967130 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTAATTAT
* *
91967152 AAAATTAGTTAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
91967174 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:91970896 original size:29 final size:29
Alignment explanation
Indices: 91970840--91970897 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
91970830 GCCTTTTGAA
* * *
91970840 AATATTTACAAAAAGAGGCATCTAATTTT
1 AATATTTACAAAAAGAGACAACCAATTTT
91970869 AATATTTACAAAAAGA-ACAACCACATTTT
1 AATATTTACAAAAAGAGACAACCA-ATTTT
91970898 GAAAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (29 bp):
AATATTTACAAAAAGAGACAACCAATTTT
Found at i:91978319 original size:22 final size:22
Alignment explanation
Indices: 91978292--91978335 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
91978282 AAAAATAATC
*
91978292 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
91978314 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
91978336 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:91978951 original size:39 final size:39
Alignment explanation
Indices: 91978894--91979030 Score: 141
Period size: 39 Copynumber: 3.7 Consensus size: 39
91978884 TGACACACAA
* **
91978894 CCTGCTAGTCACAAAGCCCGAATAATCACAGGCACAAAG
1 CCTGCTAGGCACTTAGCCCGAATAATCACAGGCACAAAG
*
91978933 CCTGCTAGGCACTTAGCCCGAATAATCACTGGCACAAAG
1 CCTGCTAGGCACTTAGCCCGAATAATCACAGGCACAAAG
91978972 CCTGCTA-G------G--CGAATAATCACCA-GCACAAAG
1 CCTGCTAGGCACTTAGCCCGAATAATCA-CAGGCACAAAG
* *
91979002 CCTGCTAGGCAATTAGCTCGAATAATCAC
1 CCTGCTAGGCACTTAGCCCGAATAATCAC
91979031 CGTATTTCTA
Statistics
Matches: 83, Mismatches: 5, Indels: 21
0.76 0.05 0.19
Matches are distributed among these distances:
30 25 0.30
31 2 0.02
32 1 0.01
37 1 0.01
38 2 0.02
39 52 0.63
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.17
Consensus pattern (39 bp):
CCTGCTAGGCACTTAGCCCGAATAATCACAGGCACAAAG
Found at i:91978987 original size:30 final size:30
Alignment explanation
Indices: 91978951--91979011 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
91978941 GCACTTAGCC
**
91978951 CGAATAATCACTGGCACAAAGCCTGCTAGG
1 CGAATAATCACCAGCACAAAGCCTGCTAGG
91978981 CGAATAATCACCAGCACAAAGCCTGCTAGG
1 CGAATAATCACCAGCACAAAGCCTGCTAGG
91979011 C
1 C
91979012 AATTAGCTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.30, G:0.21, T:0.15
Consensus pattern (30 bp):
CGAATAATCACCAGCACAAAGCCTGCTAGG
Found at i:91979403 original size:17 final size:18
Alignment explanation
Indices: 91979358--91979404 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
91979348 TTTAACTCGA
*
91979358 AATTTAT-CAAATTAACT
1 AATTTATCCAAATCAACT
91979375 AATTT-TCTCAAATCAA-T
1 AATTTATC-CAAATCAACT
91979392 AATTTATCCAAAT
1 AATTTATCCAAAT
91979405 ATTCTAAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 1 0.04
17 16 0.62
18 9 0.35
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (18 bp):
AATTTATCCAAATCAACT
Found at i:91985772 original size:10 final size:10
Alignment explanation
Indices: 91985757--91985785 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
91985747 GATCACATGG
91985757 GAAAAAAAAA
1 GAAAAAAAAA
91985767 G-AAAAAAAA
1 GAAAAAAAAA
91985776 GAAAAAAAAA
1 GAAAAAAAAA
91985786 AGGGGGGGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:91985773 original size:9 final size:9
Alignment explanation
Indices: 91985759--91985784 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
91985749 TCACATGGGA
91985759 AAAAAAAAG
1 AAAAAAAAG
91985768 AAAAAAAAG
1 AAAAAAAAG
91985777 AAAAAAAA
1 AAAAAAAA
91985785 AAGGGGGGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:91994783 original size:92 final size:91
Alignment explanation
Indices: 91994619--91994789 Score: 234
Period size: 92 Copynumber: 1.9 Consensus size: 91
91994609 TACTGATATC
* * * * *
91994619 GGTATAGCGGATTACCGTATTGCACTATACCGCATGTATGTTAGCTACACTATGTACCATTAACT
1 GGTATAGCGGATTACCGCATTACACTATACCGCATGTACGTTACCTACACTATGTACCACTAACT
91994684 GAACTGGCAGCTTCACTGCAACCTATT
66 GAACTGGCAG-TTCACTGCAACCTATT
* * * * *
91994711 GGTATAGCGGATTATCGCATTACACTGTACTGCATGTACGTTACCTACGCTATGTACCACTATCT
1 GGTATAGCGGATTACCGCATTACACTATACCGCATGTACGTTACCTACACTATGTACCACTAACT
*
91994776 GATCTGGCAGTTCA
66 GAACTGGCAGTTCA
91994790 TACTGCATGT
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
91 4 0.06
92 64 0.94
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (91 bp):
GGTATAGCGGATTACCGCATTACACTATACCGCATGTACGTTACCTACACTATGTACCACTAACT
GAACTGGCAGTTCACTGCAACCTATT
Found at i:91996751 original size:29 final size:29
Alignment explanation
Indices: 91996719--91996800 Score: 119
Period size: 29 Copynumber: 2.8 Consensus size: 29
91996709 ATTGTTTTGG
91996719 GAAAAAATAATTTTGACAAGATGGGTTCT
1 GAAAAAATAATTTTGACAAGATGGGTTCT
* * *
91996748 GAAAAAATAAATTTGACATGATGTGTTCT
1 GAAAAAATAATTTTGACAAGATGGGTTCT
* *
91996777 GAAAAAATTATTTTGACGAGATGG
1 GAAAAAATAATTTTGACAAGATGG
91996801 ATTTTGTTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (29 bp):
GAAAAAATAATTTTGACAAGATGGGTTCT
Found at i:92000323 original size:50 final size:50
Alignment explanation
Indices: 92000266--92000365 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
92000256 TACAAAAATA
* *
92000266 TTCAAAAGAGCTTCTATTTTATTAAATGAAATAATAGTAAAATAATTTGT
1 TTCAAAAGAACTTCTATTTTATTAAATGAAACAATAGTAAAATAATTTGT
* *
92000316 TTCAAAAGAATTTCTATTTTATTAAATGAAACAATATTAAAATAATTTGT
1 TTCAAAAGAACTTCTATTTTATTAAATGAAACAATAGTAAAATAATTTGT
92000366 ACAAAAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (50 bp):
TTCAAAAGAACTTCTATTTTATTAAATGAAACAATAGTAAAATAATTTGT
Found at i:92000381 original size:59 final size:59
Alignment explanation
Indices: 92000316--92000440 Score: 189
Period size: 59 Copynumber: 2.1 Consensus size: 59
92000306 AATAATTTGT
* *
92000316 TTCAAAAGAATTTCTATTTTATTAAATGAAACAATATT-AAAATAATTTGTACAAAAATA
1 TTCAAAACAACTTCTATTTTATTAAATGAAACAAT-TTAAAAATAATTTGTACAAAAATA
**
92000375 TTCAAAACAACTTCTATTTTATTGGATGAAACAATTTAAAAATAATTTGTACAAAAATA
1 TTCAAAACAACTTCTATTTTATTAAATGAAACAATTTAAAAATAATTTGTACAAAAATA
*
92000434 TTAAAAA
1 TTCAAAA
92000441 ATAAACCAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
58 2 0.03
59 58 0.97
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (59 bp):
TTCAAAACAACTTCTATTTTATTAAATGAAACAATTTAAAAATAATTTGTACAAAAATA
Found at i:92000417 original size:109 final size:108
Alignment explanation
Indices: 92000225--92000424 Score: 312
Period size: 109 Copynumber: 1.8 Consensus size: 108
92000215 GAACTTTTAA
* *
92000225 TTTATTAAATGAAACAATAAAAAATAATTTGTACAAAAATATTCAAAAGAGCTTCTATTTTATTA
1 TTTATTAAATGAAACAATAAAAAATAATTTGTACAAAAATATTCAAAACAACTTCTATTTTATTA
*
92000290 AATGAAATAATAGTAAAATAATTTGTTTCAAAAGAATTTCTAT
66 AATGAAACAATAGTAAAATAATTTGTTTCAAAAGAATTTCTAT
*
92000333 TTTATTAAATGAAACAATATTAAAATAATTTGTACAAAAATATTCAAAACAACTTCTATTTTATT
1 TTTATTAAATGAAACAATA-AAAAATAATTTGTACAAAAATATTCAAAACAACTTCTATTTTATT
** *
92000398 GGATGAAACAAT-TTAAAAATAATTTGT
65 AAATGAAACAATAGT-AAAATAATTTGT
92000425 ACAAAAATAT
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
108 20 0.24
109 63 0.76
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (108 bp):
TTTATTAAATGAAACAATAAAAAATAATTTGTACAAAAATATTCAAAACAACTTCTATTTTATTA
AATGAAACAATAGTAAAATAATTTGTTTCAAAAGAATTTCTAT
Found at i:92000834 original size:18 final size:18
Alignment explanation
Indices: 92000811--92000846 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
92000801 ATATATATAT
* *
92000811 ATATAAGGGTTATGATAC
1 ATATAAGAGTTAGGATAC
92000829 ATATAAGAGTTAGGATAC
1 ATATAAGAGTTAGGATAC
92000847 GCACCTTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31
Consensus pattern (18 bp):
ATATAAGAGTTAGGATAC
Found at i:92002437 original size:32 final size:31
Alignment explanation
Indices: 92002379--92002443 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 31
92002369 ATAAAAAATT
* *
92002379 ATAAAAAATATTAATTAATTATAAAAATGAA
1 ATAAAAAATATTAATAAATTAAAAAAATGAA
*
92002410 ATAAAAAA-ATTAAATAATATTAAAAAAATTAA
1 ATAAAAAATATT-AATAA-ATTAAAAAAATGAA
92002442 AT
1 AT
92002444 TAACCCTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 3 0.10
31 12 0.41
32 14 0.48
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (31 bp):
ATAAAAAATATTAATAAATTAAAAAAATGAA
Found at i:92013953 original size:12 final size:12
Alignment explanation
Indices: 92013936--92013960 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92013926 ACCCACACAC
92013936 ACATACATATAT
1 ACATACATATAT
92013948 ACATACATATAT
1 ACATACATATAT
92013960 A
1 A
92013961 GATTTCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (12 bp):
ACATACATATAT
Found at i:92017163 original size:15 final size:16
Alignment explanation
Indices: 92017143--92017177 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
92017133 TCCCTAACGA
92017143 ACAAAAAAAG-AAAAG
1 ACAAAAAAAGTAAAAG
92017158 ACAAAAAAAGTAAAAG
1 ACAAAAAAAGTAAAAG
92017174 -CAAA
1 ACAAA
92017178 GTGCTTACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.77, C:0.09, G:0.11, T:0.03
Consensus pattern (16 bp):
ACAAAAAAAGTAAAAG
Found at i:92017340 original size:29 final size:29
Alignment explanation
Indices: 92017303--92017408 Score: 98
Period size: 29 Copynumber: 3.8 Consensus size: 29
92017293 AAATTTTAAA
*
92017303 TTAATAATAATAAAATTATATTTTAATTTT
1 TTAAAAATAATAAAATTATA-TTTAATTTT
* *
92017333 TT-TAAATAATAAAAATTTTATTTAATTTT
1 TTAAAAATAAT-AAAATTATATTTAATTTT
* *
92017362 TTAAAAATTATAAAATTATA---AA-TTA
1 TTAAAAATAATAAAATTATATTTAATTTT
*
92017387 TT-AAAGTAATAAAATTATATTT
1 TTAAAAATAATAAAATTATATTT
92017409 TTATTATAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
24 15 0.24
25 4 0.06
26 2 0.03
29 25 0.40
30 16 0.26
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (29 bp):
TTAAAAATAATAAAATTATATTTAATTTT
Found at i:92017717 original size:11 final size:10
Alignment explanation
Indices: 92017681--92017740 Score: 59
Period size: 10 Copynumber: 5.9 Consensus size: 10
92017671 AAATTATAAT
92017681 TATAAAAA-A
1 TATAAAAATA
* *
92017690 TACAAAAGTA
1 TATAAAAATA
*
92017700 TAAAAAAATA
1 TATAAAAATA
92017710 TTATAAAAATA
1 -TATAAAAATA
*
92017721 CATAAAAATA
1 TATAAAAATA
92017731 TATAAGAAAT
1 TATAA-AAAT
92017741 TAAAAATTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
9 6 0.15
10 22 0.54
11 13 0.32
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.25
Consensus pattern (10 bp):
TATAAAAATA
Found at i:92018843 original size:21 final size:22
Alignment explanation
Indices: 92018814--92018854 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
92018804 TTTTAAGATA
*
92018814 TATAGATTATAT-ATATTTAAT
1 TATAAATTATATAATATTTAAT
*
92018835 TATAAATTATTTAATATTTA
1 TATAAATTATATAATATTTA
92018855 TAAATTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TATAAATTATATAATATTTAAT
Found at i:92018857 original size:18 final size:20
Alignment explanation
Indices: 92018834--92018874 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
92018824 ATATATTTAA
92018834 TTATAAATT-AT-TTAATAT
1 TTATAAATTAATATTAATAT
92018852 TTATAAATTAATATTAATAT
1 TTATAAATTAATATTAATAT
92018872 TTA
1 TTA
92018875 AATGGTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.43
19 2 0.10
20 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTATAAATTAATATTAATAT
Found at i:92018875 original size:27 final size:25
Alignment explanation
Indices: 92018842--92018915 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 25
92018832 AATTATAAAT
92018842 TATTTAATATTTATAAATTAATATTAA
1 TATTTAA-ATTTATAAA-TAATATTAA
*
92018869 TATTTAAATGGTTATAAAAAATATTAA
1 TATTTAAAT--TTATAAATAATATTAA
92018896 TATTTAAATTTA-AAATAATA
1 TATTTAAATTTATAAATAATA
92018916 ATTTTTAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
24 7 0.16
25 3 0.07
26 2 0.05
27 24 0.56
28 7 0.16
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (25 bp):
TATTTAAATTTATAAATAATATTAA
Found at i:92018910 original size:21 final size:22
Alignment explanation
Indices: 92018826--92018923 Score: 62
Period size: 21 Copynumber: 4.4 Consensus size: 22
92018816 TAGATTATAT
*
92018826 ATATTT-AATTATAAATTATTTA
1 ATATTTAAATTATAAAATA-TTA
*
92018848 ATATTTATAA--AT-TAATATTA
1 ATATTTA-AATTATAAAATATTA
92018868 ATATTTAAATGGTTATAAAAAATATTA
1 ATATTTAAA---TTAT--AAAATATTA
*
92018895 ATATTTAAATT-TAAAATAATA
1 ATATTTAAATTATAAAATATTA
*
92018916 ATTTTTAA
1 ATATTTAA
92018924 TAATTTTTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 21
0.70 0.06 0.24
Matches are distributed among these distances:
19 2 0.03
20 10 0.16
21 18 0.30
22 8 0.13
23 1 0.02
24 6 0.10
27 16 0.26
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATTTAAATTATAAAATATTA
Found at i:92019609 original size:19 final size:20
Alignment explanation
Indices: 92019566--92019609 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
92019556 TTTTTGAAGA
* *
92019566 TAAATTTTTGAAGGAATGTC
1 TAAATTTTTGAAGAAATGAC
*
92019586 AAAATTTTTGAAGAAAT-AC
1 TAAATTTTTGAAGAAATGAC
92019605 TAAAT
1 TAAAT
92019610 GTAACACCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (20 bp):
TAAATTTTTGAAGAAATGAC
Found at i:92025414 original size:38 final size:37
Alignment explanation
Indices: 92025363--92025441 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 37
92025353 TAGAAGCATA
*
92025363 ATGTTATTCGGGCTCTGTGCCTAGTAGGCTTTGTGTCG
1 ATGTTATTCGGGCTCTGTGCCTAGTAGGC-TTGTGCCG
92025401 ATGTTATTCGGGCTCTGTGCCTAGTAGGCTTGTGCCG
1 ATGTTATTCGGGCTCTGTGCCTAGTAGGCTTGTGCCG
92025438 ATGT
1 ATGT
92025442 ATTGAAAGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 11 0.28
38 29 0.73
ACGTcount: A:0.11, C:0.19, G:0.32, T:0.38
Consensus pattern (37 bp):
ATGTTATTCGGGCTCTGTGCCTAGTAGGCTTGTGCCG
Found at i:92030768 original size:17 final size:16
Alignment explanation
Indices: 92030748--92030786 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
92030738 GCTATAAGTA
92030748 TCAAATAGCTATAGAAT
1 TCAAA-AGCTATAGAAT
**
92030765 TCAAAATTTATAGAAT
1 TCAAAAGCTATAGAAT
92030781 TCAAAA
1 TCAAAA
92030787 TTTGAGATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.31
Consensus pattern (16 bp):
TCAAAAGCTATAGAAT
Found at i:92030778 original size:16 final size:16
Alignment explanation
Indices: 92030757--92030789 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
92030747 ATCAAATAGC
92030757 TATAGAATTCAAAATT
1 TATAGAATTCAAAATT
92030773 TATAGAATTCAAAATT
1 TATAGAATTCAAAATT
92030789 T
1 T
92030790 GAGATCCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (16 bp):
TATAGAATTCAAAATT
Found at i:92037136 original size:32 final size:32
Alignment explanation
Indices: 92037100--92037163 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
92037090 AGCATAATGT
* *
92037100 TATTCAAGCTTTGTGCCTAGCAGGCTCTGTGC
1 TATTCAAGCTCTATGCCTAGCAGGCTCTGTGC
* *
92037132 TATTCAGGCTCTATGCCTAGCAGGCTTTGTGC
1 TATTCAAGCTCTATGCCTAGCAGGCTCTGTGC
92037164 CGATGTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.34
Consensus pattern (32 bp):
TATTCAAGCTCTATGCCTAGCAGGCTCTGTGC
Found at i:92037164 original size:16 final size:16
Alignment explanation
Indices: 92037111--92037164 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
92037101 ATTCAAGCTT
92037111 TGTGCCTAGCAGGCTC
1 TGTGCCTAGCAGGCTC
*
92037127 TGTG-CTATTCAGGCTC
1 TGTGCCTA-GCAGGCTC
* *
92037143 TATGCCTAGCAGGCTT
1 TGTGCCTAGCAGGCTC
92037159 TGTGCC
1 TGTGCC
92037165 GATGTTATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
15 3 0.10
16 25 0.81
17 3 0.10
ACGTcount: A:0.13, C:0.28, G:0.28, T:0.31
Consensus pattern (16 bp):
TGTGCCTAGCAGGCTC
Found at i:92037183 original size:38 final size:38
Alignment explanation
Indices: 92037132--92037244 Score: 140
Period size: 38 Copynumber: 3.0 Consensus size: 38
92037122 GGCTCTGTGC
*
92037132 TATTCAGGCTCTATGCCTAGCAGGCTTTGTGCCGATGT
1 TATTCAGGCTCTATGCCTAGCAAGCTTTGTGCCGATGT
*
92037170 TATTC-GGACTCTATGCCTAGCAAGCTTTGTGCCGGTGT
1 TATTCAGG-CTCTATGCCTAGCAAGCTTTGTGCCGATGT
* * * * *
92037208 TATTTAGGCTTTTTGCTTAACAAGC-TTGTGCCGATGT
1 TATTCAGGCTCTATGCCTAGCAAGCTTTGTGCCGATGT
92037245 ATTGAAAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
37 13 0.20
38 50 0.77
39 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (38 bp):
TATTCAGGCTCTATGCCTAGCAAGCTTTGTGCCGATGT
Found at i:92038090 original size:42 final size:42
Alignment explanation
Indices: 92038028--92038114 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 42
92038018 CCTAGCACAC
* * * * *
92038028 GGCCTGACACATGGGCGTGTGAGGCCATTTTGAATGTTACAT
1 GGCCTCACACATGGACGTGTGAAGCCATTTCGAATATTACAT
* *
92038070 GGCCTCACACATGGATGTGTGAAGCCCTTTCGAATATTACAT
1 GGCCTCACACATGGACGTGTGAAGCCATTTCGAATATTACAT
92038112 GGC
1 GGC
92038115 GTGGCACGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (42 bp):
GGCCTCACACATGGACGTGTGAAGCCATTTCGAATATTACAT
Found at i:92057845 original size:29 final size:29
Alignment explanation
Indices: 92057808--92057884 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
92057798 ATATTCATAT
* *
92057808 GGCCAATTAGGCCCAAGTCACCTATATAG
1 GGCCCATTAGGCCCAAGTCACATATATAG
* * *
92057837 GGCCCATTAGGCCCAAATCACATTTATAT
1 GGCCCATTAGGCCCAAGTCACATATATAG
92057866 GGCCCGA-TAGGCCC-AGTCA
1 GGCCC-ATTAGGCCCAAGTCA
92057885 TGTTCATATT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 4 0.10
29 36 0.88
30 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (29 bp):
GGCCCATTAGGCCCAAGTCACATATATAG
Found at i:92061680 original size:40 final size:40
Alignment explanation
Indices: 92061625--92061701 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
92061615 GATACATAAT
92061625 GACTCTACAGGCAAAGTCTTACTGTGTACTAAATTCAGTA
1 GACTCTACAGGCAAAGTCTTACTGTGTACTAAATTCAGTA
92061665 GACTCTACAGGCAAAGTCTTACTGTGTACTAAATTCA
1 GACTCTACAGGCAAAGTCTTACTGTGTACTAAATTCA
92061702 TATAGATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (40 bp):
GACTCTACAGGCAAAGTCTTACTGTGTACTAAATTCAGTA
Found at i:92071399 original size:25 final size:25
Alignment explanation
Indices: 92071371--92071418 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
92071361 TTATAATATG
* * *
92071371 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
92071396 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
92071419 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:92071481 original size:11 final size:11
Alignment explanation
Indices: 92071465--92071502 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
92071455 ACACGATTGG
92071465 ACATGATATGC
1 ACATGATATGC
92071476 ACATGATATG-
1 ACATGATATGC
*
92071486 -TATGATATGC
1 ACATGATATGC
92071496 ACATGAT
1 ACATGAT
92071503 GTATTCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.35
11 15 0.65
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:92071588 original size:24 final size:25
Alignment explanation
Indices: 92071550--92071619 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 25
92071540 GAGGAAGTGC
* *
92071550 AAAAGGGTTTTTGCCCCAGTTTACCG
1 AAAAGGG-CTTTGCCCCAGTTTACCA
* *
92071576 AAAA-GGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
92071600 AAAAGGGCTTTGGCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
92071620 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
24 18 0.49
25 15 0.41
26 4 0.11
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:92071621 original size:24 final size:24
Alignment explanation
Indices: 92071559--92071632 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 24
92071549 CAAAAGGGTT
* *
92071559 TTTGCCCC-AGTTTACCGAAAAGGC
1 TTTGCCCCAAG-TTATCAAAAAGGC
*
92071583 TTTGCCCCAATTTATCAAAAAGGGC
1 TTTGCCCCAAGTTATCAAAAA-GGC
* *
92071608 TTTGGCCC-AGTTATTAAAAGAGGC
1 TTTGCCCCAAGTTATCAAAA-AGGC
92071632 T
1 T
92071633 AGGCCTCCAG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
24 29 0.71
25 12 0.29
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
TTTGCCCCAAGTTATCAAAAAGGC
Found at i:92071905 original size:31 final size:30
Alignment explanation
Indices: 92071838--92071907 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
92071828 ACCGTTTACA
* *
92071838 GTAAAGGCTTCGGCCCAGTGATATGATAAT
1 GTAAAGGCTTCAGCCCAGTGACATGATAAT
* *
92071868 GAAAAGGCTTCAGCCTAGTGACATGAATAAT
1 GTAAAGGCTTCAGCCCAGTGACATG-ATAAT
92071899 GTAAAGGCT
1 GTAAAGGCT
92071908 GATATTGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 21 0.62
31 13 0.38
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (30 bp):
GTAAAGGCTTCAGCCCAGTGACATGATAAT
Found at i:92075251 original size:39 final size:40
Alignment explanation
Indices: 92075107--92075352 Score: 295
Period size: 40 Copynumber: 6.2 Consensus size: 40
92075097 CGGATGATAA
* **
92075107 CCGGGCTAAGTCCCG-AGAGCATTTGTGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA-T
* * *
92075147 CCGGGCTAAGTCCCGAAGGCATTCGTGTGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
92075187 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
92075227 CCGGGCT-AGTCCTGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
92075265 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
92075305 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
92075345 CC-GGCTAA
1 CCGGGCTAA
92075353 ACTCCGAAGG
Statistics
Matches: 181, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
38 7 0.04
39 63 0.35
40 108 0.60
41 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:92080443 original size:40 final size:40
Alignment explanation
Indices: 92080390--92080701 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
92080380 CAGCCGCAAA
* * * *
92080390 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
92080430 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
92080470 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
92080510 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
92080550 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
92080590 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
92080630 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
92080670 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
92080702 ATCCAATGTT
Statistics
Matches: 254, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 254 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:92088678 original size:40 final size:40
Alignment explanation
Indices: 92088625--92088936 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
92088615 CAGCCGCAAA
* * * *
92088625 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
92088665 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
92088705 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
92088745 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
92088785 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
92088825 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
92088865 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
92088905 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
92088937 ATCCAATGTT
Statistics
Matches: 254, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 254 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:92091475 original size:79 final size:79
Alignment explanation
Indices: 92091388--92091533 Score: 220
Period size: 79 Copynumber: 1.8 Consensus size: 79
92091378 GGCGAGATAC
* * * * *
92091388 TAAATCCGGGTTAAGTCCCGAGGGCATTGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
92091453 TTCGTGCGAGTTGT
66 TTCGTGCGAGTTGT
* * *
92091467 TAAATCCGGGTTACGTCCCGAAGGCATGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
92091532 TT
66 TT
92091534 TGAACGAGGA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 59 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (79 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
TTCGTGCGAGTTGT
Found at i:92091476 original size:40 final size:39
Alignment explanation
Indices: 92091365--92091533 Score: 194
Period size: 39 Copynumber: 4.3 Consensus size: 39
92091355 GGACTAAGAT
* * * *
92091365 CCGAAGGCCTTTGGGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
92091405 CCGAGGGCATTGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
92091444 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATT-GTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * * *
92091484 CCGAAGGCATGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTATTAAATCCGGGTTAAGTC
92091523 CCGAAGGCATT
1 CCGAAGGCATT
92091534 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 69 0.63
40 41 0.37
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:92091553 original size:79 final size:79
Alignment explanation
Indices: 92091387--92091568 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 79
92091377 GGGCGAGATA
* * * * *
92091387 CTAAATCCGGGTTAAGTCCCGAGGGCATTGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** **
92091452 ATTCGTGCGAGTTG
66 ATTCGAACGAGGAG
* * * *
92091466 TTAAATCCGGGTTACGTCCCGAAGGCATGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
92091531 ATTTGAACGAGGAG
66 ATTCGAACGAGGAG
* *
92091545 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
92091569 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
78 14 0.16
79 71 0.84
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAG
Found at i:92098712 original size:39 final size:39
Alignment explanation
Indices: 92098588--92098809 Score: 194
Period size: 40 Copynumber: 5.6 Consensus size: 39
92098578 TTGAATGCTG
* * * ** * *
92098588 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * * *
92098628 TCCGGACTAAGAT-CCGAAGGCCTTTGGGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
92098668 TCCGGGTTAAGTCCCGAGGGCATTGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* **
92098707 GCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * *
92098747 TCCGGGTTACGTCCCGAAGGCATGGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
92098786 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
92098810 TGAACGAGGA
Statistics
Matches: 151, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 70 0.46
40 73 0.48
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.24
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:92098751 original size:79 final size:79
Alignment explanation
Indices: 92098664--92098809 Score: 220
Period size: 79 Copynumber: 1.8 Consensus size: 79
92098654 GGCGAGATAC
* * * * *
92098664 TAAATCCGGGTTAAGTCCCGAGGGCATTGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
92098729 TTGGTGCGAGTTGT
66 TTGGTGCGAGTTGT
* * *
92098743 TAAATCCGGGTTACGTCCCGAAGGCATGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
92098808 TT
66 TT
92098810 TGAACGAGGA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 59 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (79 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA
TTGGTGCGAGTTGT
Found at i:92098752 original size:40 final size:40
Alignment explanation
Indices: 92098641--92098809 Score: 200
Period size: 39 Copynumber: 4.3 Consensus size: 40
92098631 GGACTAAGAT
* * *
92098641 CCGAAGGCCTTTGG-GCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
92098681 CCGAGGGCATT-GTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTGGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
92098720 CCGAAGGCATTGGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTGGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
92098760 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGGTGCGAGTTATTAAATCCGGGTTAAGTC
92098799 CCGAAGGCATT
1 CCGAAGGCATT
92098810 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 69 0.62
40 41 0.37
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTGGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:92098829 original size:79 final size:79
Alignment explanation
Indices: 92098663--92098844 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 79
92098653 GGGCGAGATA
* * * * *
92098663 CTAAATCCGGGTTAAGTCCCGAGGGCATTGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** **
92098728 ATTGGTGCGAGTTG
66 ATTGGAACGAGGAG
* * * *
92098742 TTAAATCCGGGTTACGTCCCGAAGGCATGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
92098807 ATTTGAACGAGGAG
66 ATTGGAACGAGGAG
* *
92098821 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
92098845 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
78 14 0.16
79 71 0.84
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATGGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTGGAACGAGGAG
Found at i:92102685 original size:40 final size:40
Alignment explanation
Indices: 92102637--92102820 Score: 273
Period size: 40 Copynumber: 4.6 Consensus size: 40
92102627 ACTACTCGCC
* *
92102637 CAAATGCCTTCGGGACTTAGCCCGGTTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
*
92102677 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* *
92102717 CAAATGCCTTCGGGAGTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * *
92102757 CGAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTGCA
92102796 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
92102821 TTATCATCCG
Statistics
Matches: 131, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.25
40 97 0.74
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
Found at i:92102815 original size:119 final size:119
Alignment explanation
Indices: 92102604--92102818 Score: 317
Period size: 119 Copynumber: 1.8 Consensus size: 119
92102594 CAACCCGGTA
* * * **
92102604 CCTTCGGGATTTATCCGGATATAACTACTCGCCCAAATGCCTTCGGGACTTAGCCCGGTTTTAGT
1 CCTTCGGGAGTTACCCGGATATAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
*
92102669 AACTTGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATG
* *
92102723 CCTTCGGGAGTTAGCCCGGATAT-AGTAACTCGCACGAATGCCTTCGGG-CTTAGCCCGGAATTA
1 CCTTCGGGAGTTA-CCCGGATATAACT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
*
92102786 GTCACTAGCACAAATGCCTTCGGGACTTAGCCC
64 GTAACTAGCACAAATGCCTTCGGGACTTAGCCC
92102819 GGTTATCATC
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
119 58 0.68
120 27 0.32
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CCTTCGGGAGTTACCCGGATATAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATG
Found at i:92120206 original size:24 final size:25
Alignment explanation
Indices: 92120173--92120234 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
92120163 AAAAAAACAT
*
92120173 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
92120198 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
92120222 TACATAATATATA
1 TACATAATATATA
92120235 CATAACATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:92120638 original size:23 final size:23
Alignment explanation
Indices: 92120622--92120668 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
92120612 ATATATTAGG
*
92120622 AACAACAATAATAATATATATAA
1 AACAACAATAAGAATATATATAA
*
92120645 AACAACTATAAGAATATATATAA
1 AACAACAATAAGAATATATATAA
92120668 A
1 A
92120669 GTTTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.26
Consensus pattern (23 bp):
AACAACAATAAGAATATATATAA
Found at i:92120729 original size:19 final size:20
Alignment explanation
Indices: 92120692--92120733 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
92120682 TAGTATTAAT
92120692 TAAAAATGTCTAAATAATAA
1 TAAAAATGTCTAAATAATAA
92120712 TAAAATATGT-TAAA-AATAA
1 TAAAA-ATGTCTAAATAATAA
92120731 TAA
1 TAA
92120734 TACAAGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 9 0.43
21 4 0.19
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
TAAAAATGTCTAAATAATAA
Found at i:92122623 original size:44 final size:43
Alignment explanation
Indices: 92122575--92122815 Score: 148
Period size: 44 Copynumber: 5.5 Consensus size: 43
92122565 TGATCTGCTT
* * *
92122575 CCCTACTGCTTAGGGTGATAAGATCTATGAACTTTAGCTTGTTA
1 CCCTACTGCTTAGGGGGTTAA-ATCTATGAACTTTAACTTGTTA
* * * *** ** * *
92122619 CCCTACTACTTAGGGGGTTAAAGCTCGTCCCCTTCGA-TCCGTTT
1 CCCTACTGCTTAGGGGGTTAAATCT-ATGAACTTTAACT-TGTTA
* * *
92122663 CCCTACTGCTTAGGGTGATAAAATCTTATGAACTTCAACTTGTTA
1 CCCTACTGCTTAGGG-GGTTAAATC-TATGAACTTTAACTTGTTA
* * * * * * *
92122708 CCCTACTACTTAGGGAGTTAAAGCTCGTCACCTTTGATCTAT-TT-
1 CCCTACTGCTTAGGGGGTTAAATCT-ATGAACTTT-AACT-TGTTA
*
92122752 CCCTACTGCTTAGGGGGTTAAGATCTATGAA-TTCAACTTGTTA
1 CCCTACTGCTTAGGGGGTTAA-ATCTATGAACTTTAACTTGTTA
*
92122795 CCCTACTGCTTAGGTGGTTAA
1 CCCTACTGCTTAGGGGGTTAA
92122816 GGTCTGGTGA
Statistics
Matches: 143, Mismatches: 43, Indels: 23
0.68 0.21 0.11
Matches are distributed among these distances:
41 1 0.01
42 5 0.03
43 27 0.19
44 70 0.49
45 37 0.26
46 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGGTTAAATCTATGAACTTTAACTTGTTA
Found at i:92122718 original size:89 final size:88
Alignment explanation
Indices: 92122573--92122815 Score: 362
Period size: 89 Copynumber: 2.8 Consensus size: 88
92122563 TTTGATCTGC
* *
92122573 TTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTTAGCTTGTTACCCTACTACTTAGGGGGTT
1 TTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTCAACTTGTTACCCTACTACTTAGGGGGTT
* *
92122638 AAAGCTCGTCCCCTTCGATCCGT
66 AAAGCTCGTCACCTTCGATCCAT
* *
92122661 TTCCCTACTGCTTAGGGTGATAAAATCTTATGAACTTCAACTTGTTACCCTACTACTTAGGGAGT
1 TTCCCTACTGCTTAGGGTGATAAGATC-TATGAACTTCAACTTGTTACCCTACTACTTAGGGGGT
* *
92122726 TAAAGCTCGTCACCTTTGATCTAT
65 TAAAGCTCGTCACCTTCGATCCAT
* * * *
92122750 TTCCCTACTGCTTAGGGGGTTAAGATCTATGAA-TTCAACTTGTTACCCTACTGCTTAGGTGGTT
1 TTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTCAACTTGTTACCCTACTACTTAGGGGGTT
92122814 AA
66 AA
92122816 GGTCTGGTGA
Statistics
Matches: 140, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
87 30 0.21
88 32 0.23
89 78 0.56
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (88 bp):
TTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTCAACTTGTTACCCTACTACTTAGGGGGTT
AAAGCTCGTCACCTTCGATCCAT
Found at i:92132179 original size:25 final size:24
Alignment explanation
Indices: 92132151--92132198 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
92132141 GATCAATCAT
*
92132151 ATAACTCATGATAATGATTAATAAC
1 ATAACTCATCATAATGA-TAATAAC
* *
92132176 ATAATTCTTCATAATGATAATAA
1 ATAACTCATCATAATGATAATAA
92132199 TAAAGATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (24 bp):
ATAACTCATCATAATGATAATAAC
Found at i:92146685 original size:23 final size:23
Alignment explanation
Indices: 92146609--92146747 Score: 208
Period size: 23 Copynumber: 6.0 Consensus size: 23
92146599 GCTTTATCGT
*
92146609 ATAACTGGAGGCCT-AGCCTCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTA
*
92146633 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
* *
92146657 ACAACTGTGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
92146680 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
92146703 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
92146726 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
92146748 TGCACTTCCT
Statistics
Matches: 106, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 74 0.70
24 32 0.30
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:92146786 original size:13 final size:13
Alignment explanation
Indices: 92146768--92146795 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92146758 CCATCCATAT
92146768 AAAAACCCAACCC
1 AAAAACCCAACCC
92146781 AAAAACCCAACCC
1 AAAAACCCAACCC
92146794 AA
1 AA
92146796 TGCGTTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.43, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAACCCAACCC
Found at i:92146837 original size:20 final size:20
Alignment explanation
Indices: 92146812--92146850 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
92146802 TATGAATAGA
92146812 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
92146832 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
92146851 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:92146856 original size:20 final size:20
Alignment explanation
Indices: 92146813--92146857 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
92146803 ATGAATAGAT
**
92146813 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
92146833 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
92146853 CATGT
1 CATGT
92146858 TTATCAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:92167159 original size:46 final size:46
Alignment explanation
Indices: 92167001--92167157 Score: 169
Period size: 46 Copynumber: 3.4 Consensus size: 46
92166991 ATAAGCAAAC
* * * *
92167001 CGGACTCAACTCAATGAGCTAGGGCGTTCGCATCCATAAGTGAACT
1 CGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACT
*
92167047 CGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TTA-TGAACT
1 CGGACTCAACTCAACGAGCTCGGA---C--GTTCACATCCATAAGTGAACT
* * *
92167094 CGGACTAAACTCAACGAGTTCGGACGTTCACATCCATGAGTGAACT
1 CGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACT
92167140 CGGACTCAACTCAACGAG
1 CGGACTCAACTCAACGAG
92167158 TTGGATGCCC
Statistics
Matches: 93, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 2 0.02
45 2 0.02
46 44 0.47
47 28 0.30
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACT
Found at i:92175142 original size:27 final size:27
Alignment explanation
Indices: 92175112--92175286 Score: 165
Period size: 27 Copynumber: 6.4 Consensus size: 27
92175102 ATTGAGCCCA
* * *
92175112 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCCACATAATCAACTCG
* *
92175139 CACACTTAGTGCCACAGAATCAAATCG
1 CACACTTAGTGCCACATAATCAACTCG
*
92175166 CACACTTAGTGCCACATAGTCAGACTCG
1 CACACTTAGTGCCACATAATCA-ACTCG
* ** *
92175194 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCCACATAATCAACTCG
* * **
92175221 CACGCTTAGTG-CATCATATTCATTTCG
1 CACACTTAGTGCCA-CATAATCAACTCG
* *
92175248 CACACTTAGTGCAACATAGTCGAA-TCG
1 CACACTTAGTGCCACATAATC-AACTCG
92175275 CACACTTAGTGC
1 CACACTTAGTGC
92175287 TGTACAATTT
Statistics
Matches: 124, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 97 0.78
28 26 0.21
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (27 bp):
CACACTTAGTGCCACATAATCAACTCG
Found at i:92178819 original size:22 final size:22
Alignment explanation
Indices: 92178794--92178859 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
92178784 GCTGCCAGTT
92178794 AGCAGAACGGCTAAAAGCCATA
1 AGCAGAACGGCTAAAAGCCATA
* *
92178816 AGCAGAAAGGC-AGAAAGCCTTGA
1 AGCAGAACGGCTA-AAAGCCAT-A
* *
92178839 A-CAAAACGGCTACAAGCCATA
1 AGCAGAACGGCTAAAAGCCATA
92178860 CACTTCCTCC
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
21 2 0.06
22 30 0.86
23 3 0.09
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.09
Consensus pattern (22 bp):
AGCAGAACGGCTAAAAGCCATA
Found at i:92179337 original size:22 final size:22
Alignment explanation
Indices: 92179312--92179355 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
92179302 TTTCTTATTG
*
92179312 TTTT-CTACCTATTTTGCTACTA
1 TTTTACTA-CTATGTTGCTACTA
*
92179334 TTTTACTATTATGTTGCTACTA
1 TTTTACTACTATGTTGCTACTA
92179356 CTTTGTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.20, C:0.18, G:0.07, T:0.55
Consensus pattern (22 bp):
TTTTACTACTATGTTGCTACTA
Found at i:92179433 original size:30 final size:30
Alignment explanation
Indices: 92179397--92179459 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
92179387 ACTTATTTTA
*
92179397 TTGTTAATTTTTTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
92179427 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
92179457 TTG
1 TTG
92179460 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:92183926 original size:19 final size:19
Alignment explanation
Indices: 92183899--92183945 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
92183889 GTTGTTTTTA
*
92183899 ATGTAAATG-AACCATATAT
1 ATGTGAATGTAACCATAT-T
*
92183918 ATGTGAATGTATCCATATT
1 ATGTGAATGTAACCATATT
92183937 ATGATGAAT
1 ATG-TGAAT
92183946 TGATGGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGTGAATGTAACCATATT
Found at i:92192183 original size:10 final size:10
Alignment explanation
Indices: 92192166--92192204 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
92192156 ATATATGAAT
92192166 ATATCATGGC
1 ATATCATGGC
*
92192176 ATAACATGTGC
1 ATATCATG-GC
92192187 ATATCATGGC
1 ATATCATGGC
92192197 ATATCATG
1 ATATCATG
92192205 TACAAATCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
ATATCATGGC
Found at i:92192191 original size:21 final size:21
Alignment explanation
Indices: 92192166--92192205 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
92192156 ATATATGAAT
92192166 ATATCATGGCATAACATGTGC
1 ATATCATGGCATAACATGTGC
*
92192187 ATATCATGGCATATCATGT
1 ATATCATGGCATAACATGT
92192206 ACAAATCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (21 bp):
ATATCATGGCATAACATGTGC
Found at i:92192213 original size:21 final size:21
Alignment explanation
Indices: 92192168--92192213 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
92192158 ATATGAATAT
* *
92192168 ATCATGGCATAACATGTGCAT
1 ATCATGGCATAACATGTACAA
*
92192189 ATCATGGCATATCATGTACAA
1 ATCATGGCATAACATGTACAA
92192210 ATCA
1 ATCA
92192214 GTATTACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (21 bp):
ATCATGGCATAACATGTACAA
Found at i:92192286 original size:25 final size:25
Alignment explanation
Indices: 92192244--92192294 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
92192234 ATAGCACATC
* *
92192244 CCTAGGGGTATAACGGTCATTTTCA
1 CCTAGGGGAAAAACGGTCATTTTCA
*
92192269 CCTAGGGGAAAAATGGTCATTTTCA
1 CCTAGGGGAAAAACGGTCATTTTCA
92192294 C
1 C
92192295 ATTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
CCTAGGGGAAAAACGGTCATTTTCA
Found at i:92196939 original size:27 final size:27
Alignment explanation
Indices: 92196866--92196931 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
92196856 AGCTAACCAT
92196866 ATAAGGGCAAAACAGTCATTTTGCCAC
1 ATAAGGGCAAAACAGTCATTTTGCCAC
*
92196893 ATAAGAGCAAAACAGTCATTTTGCCAC
1 ATAAGGGCAAAACAGTCATTTTGCCAC
*
92196920 ATAAGGGTAAAA
1 ATAAGGGCAAAA
92196932 TAATCATTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (27 bp):
ATAAGGGCAAAACAGTCATTTTGCCAC
Found at i:92198968 original size:56 final size:56
Alignment explanation
Indices: 92198802--92198974 Score: 307
Period size: 56 Copynumber: 3.1 Consensus size: 56
92198792 ACAAGGGATG
92198802 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
92198858 ATGGGCAAAAGATGTCATGAAACA---TGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
92198911 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
92198967 ATGGGCAA
1 ATGGGCAA
92198975 TAAACTAATA
Statistics
Matches: 111, Mismatches: 3, Indels: 6
0.93 0.03 0.05
Matches are distributed among these distances:
53 52 0.47
56 59 0.53
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:92200188 original size:40 final size:39
Alignment explanation
Indices: 92200104--92200288 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
92200094 TCGAATGATG
* * *
92200104 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
92200143 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
*
92200184 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
92200223 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
92200262 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
92200289 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 36 0.29
40 79 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:92200240 original size:79 final size:81
Alignment explanation
Indices: 92200104--92200288 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
92200094 TCGAATGATG
* *
92200104 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
92200168 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
92200183 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
92200245 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
92200263 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
92200289 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:92200310 original size:79 final size:79
Alignment explanation
Indices: 92200157--92200321 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
92200147 GGACTAAGAT
* **
92200157 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
92200222 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
92200236 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
92200299 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
92200315 CCGAAGG
1 CCGAAGG
92200322 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:92206255 original size:56 final size:56
Alignment explanation
Indices: 92206089--92206261 Score: 307
Period size: 56 Copynumber: 3.1 Consensus size: 56
92206079 ACAAGGGATG
92206089 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
92206145 ATGGGCAAAAGATGTCATGAAACA---TGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
92206198 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
92206254 ATGGGCAA
1 ATGGGCAA
92206262 TAAACTAATA
Statistics
Matches: 111, Mismatches: 3, Indels: 6
0.93 0.03 0.05
Matches are distributed among these distances:
53 52 0.47
56 59 0.53
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:92207475 original size:40 final size:39
Alignment explanation
Indices: 92207391--92207575 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
92207381 TCGAATGATG
* * *
92207391 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
92207430 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
*
92207471 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
92207510 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
92207549 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
92207576 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 36 0.29
40 79 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:92207527 original size:79 final size:81
Alignment explanation
Indices: 92207391--92207575 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
92207381 TCGAATGATG
* *
92207391 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
92207455 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
92207470 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
92207532 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
92207550 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
92207576 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:92207597 original size:79 final size:79
Alignment explanation
Indices: 92207444--92207608 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
92207434 GGACTAAGAT
* **
92207444 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
92207509 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
92207523 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
92207586 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
92207602 CCGAAGG
1 CCGAAGG
92207609 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:92217859 original size:46 final size:46
Alignment explanation
Indices: 92217809--92217981 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
92217799 TGGTTGAGCA
92217809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
92217855 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-AC-TATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGAATG
* * *
92217900 CATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
92217948 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
92217982 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
45 4 0.04
46 65 0.62
47 32 0.31
48 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:92217965 original size:93 final size:93
Alignment explanation
Indices: 92217806--92217976 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
92217796 GGATGGTTGA
* * *
92217806 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92217871 TGAGTCCGAGTTCGTGAAATGTAACTAT
66 TGAGTCCGAGTTCGTGAAATGTAACTAT
* *
92217899 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92217964 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
92217977 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAT
Found at i:92236164 original size:291 final size:291
Alignment explanation
Indices: 92235640--92236167 Score: 932
Period size: 291 Copynumber: 1.8 Consensus size: 291
92235630 CTTCAAGTTT
* * * *
92235640 TTGTGACAGCGTTTGATGATCCTAAAATGGTCCAATTCCATCCCGGCGGTTTGGTTCGCTAGCTG
1 TTGTGACAGAGTTTGATGATCCTAAAATGGTCCAATTCCATCCCGGCGGTTTAGTTCACCAGCTG
92235705 AGTGTGTCTGAGTTCGGAGTCGCACTGGGACTATATACAGAGGAGTTCATGGATGACAACAATTT
66 AGTGTGTCTGAGTTCGGAGTCGCACTGGGACTATATACAGAGGAGTTCATGGATGACAACAATTT
*
92235770 TGACAGCCTCCATCACCACATCCACTACTTTCCTTCAAACTGCTGGAAGGCCCTAGTCCCTGCTT
131 TGACAGCCTCCATCACCACATCCACTACTTTCCTTCAAACTGCTCGAAGGCCCTAGTCCCTGCTT
*
92235835 CGGCCACTTATGACCCCAGTCACTCTAAGGCATCGGCTCTCAGCCCTGTCAGGGTGTGGGCTAGG
196 CGGCCACTTATGACCCCAGTCACTCCAAGGCATCGGCTCTCAGCCCTGTCAGGGTGTGGGCTAGG
92235900 ATGTCATGTAAATATCTCAGGGATGGGGTTG
261 ATGTCATGTAAATATCTCAGGGATGGGGTTG
* *
92235931 TTGTGACAGAGTTTGATGATCCTAGAATGGTCCAATTCCATCCCGGCGGTTTAGTTCACCAGTTG
1 TTGTGACAGAGTTTGATGATCCTAAAATGGTCCAATTCCATCCCGGCGGTTTAGTTCACCAGCTG
* *
92235996 AGTGTGTCTGAGTTTGGAGTCTCACTGGGACTATATACAGAGGAGTTCATGGATGACAACAATTT
66 AGTGTGTCTGAGTTCGGAGTCGCACTGGGACTATATACAGAGGAGTTCATGGATGACAACAATTT
* *
92236061 TGACAGCCTCTATCACCACATCCACTACTTTCCTTCGAACTGCTCGAAGGCCCTAGTCCCTGCTT
131 TGACAGCCTCCATCACCACATCCACTACTTTCCTTCAAACTGCTCGAAGGCCCTAGTCCCTGCTT
92236126 CGGCCACTTATGACCCCAG-CTACTCCAAGGCATCGGCTCTCA
196 CGGCCACTTATGACCCCAGTC-ACTCCAAGGCATCGGCTCTCA
92236168 CCCCATCCCT
Statistics
Matches: 224, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
290 1 0.00
291 223 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (291 bp):
TTGTGACAGAGTTTGATGATCCTAAAATGGTCCAATTCCATCCCGGCGGTTTAGTTCACCAGCTG
AGTGTGTCTGAGTTCGGAGTCGCACTGGGACTATATACAGAGGAGTTCATGGATGACAACAATTT
TGACAGCCTCCATCACCACATCCACTACTTTCCTTCAAACTGCTCGAAGGCCCTAGTCCCTGCTT
CGGCCACTTATGACCCCAGTCACTCCAAGGCATCGGCTCTCAGCCCTGTCAGGGTGTGGGCTAGG
ATGTCATGTAAATATCTCAGGGATGGGGTTG
Found at i:92245193 original size:3 final size:3
Alignment explanation
Indices: 92245185--92245219 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
92245175 TGTTCTAAAT
92245185 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
92245220 CAATACATAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:92254143 original size:87 final size:87
Alignment explanation
Indices: 92254043--92254208 Score: 185
Period size: 86 Copynumber: 1.9 Consensus size: 87
92254033 AAACTTTTAC
* * * *
92254043 AATGTATCAAAAAGATCTTCAAACTTAAAAAAAAAAAGTAATTAAG-CTCCTACTTTTTTT-TAA
1 AATGCATCAAAAAGACCCTCAAACTT-AAAAAAAAAAGCAATTAAGTC-CCTACTTTTTTTGT-A
92254106 CTAAATTGGGCACTTGAGCTTTCAT
63 CTAAATTGGGCACTTGAGCTTTCAT
* **** *
92254131 AATGCATC-AAAAGGCCCTCAAACTTTTTCAAAAAAGCAATTAAGTCCCTAGTTTTTTTGTACTA
1 AATGCATCAAAAAGACCCTCAAACTTAAAAAAAAAAGCAATTAAGTCCCTACTTTTTTTGTACTA
*
92254195 AATTGGGTACTTGA
66 AATTGGGCACTTGA
92254209 ACCATCTCTA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
86 42 0.65
87 16 0.25
88 7 0.11
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (87 bp):
AATGCATCAAAAAGACCCTCAAACTTAAAAAAAAAAGCAATTAAGTCCCTACTTTTTTTGTACTA
AATTGGGCACTTGAGCTTTCAT
Found at i:92254667 original size:20 final size:19
Alignment explanation
Indices: 92254644--92254690 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
92254634 TTTTTTCTTA
* *
92254644 TTTATAATATTTTTATATTT
1 TTTATAA-AATTTAATATTT
92254664 TTTATTAAAATTTAATATTT
1 TTTA-TAAAATTTAATATTT
92254684 TTTATAA
1 TTTATAA
92254691 CTTTGATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 18 0.75
21 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTATAAAATTTAATATTT
Found at i:92258013 original size:62 final size:62
Alignment explanation
Indices: 92257801--92258014 Score: 261
Period size: 62 Copynumber: 3.5 Consensus size: 62
92257791 ACTGCCTCAT
* * * *
92257801 GGCCTGGGCACACGCTTGTGTCCCTGGACATGT-GATTCTATACAATGAACAGTGAGTTACAC
1 GGCCTAGGCACACGCCTGTGTCCCTGGCCATGTAG-TTTTATACAATGAACAGTGAGTTACAC
* * ** * * *
92257863 GGCCTAGGAACATGCCCT-TGTCCCTTCCCATGCAGTTTTATAGAATGAAAAGTGAGTTACAC
1 GGCCTAGGCACACG-CCTGTGTCCCTGGCCATGTAGTTTTATACAATGAACAGTGAGTTACAC
* * *
92257925 GGCCTAGGCACACGCCCGTGTCCCTGGCCATGTAGTTTTATACAATGAACGGTGAGTTACAT
1 GGCCTAGGCACACGCCTGTGTCCCTGGCCATGTAGTTTTATACAATGAACAGTGAGTTACAC
*
92257987 GGCCTGGGCACACGCCTGTGTCCCTGGC
1 GGCCTAGGCACACGCCTGTGTCCCTGGC
92258015 TGTGTGGATC
Statistics
Matches: 126, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
61 2 0.02
62 121 0.96
63 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (62 bp):
GGCCTAGGCACACGCCTGTGTCCCTGGCCATGTAGTTTTATACAATGAACAGTGAGTTACAC
Found at i:92261319 original size:46 final size:45
Alignment explanation
Indices: 92261269--92261386 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 45
92261259 AGACGTGTGT
*
92261269 TAGTGTAATACATGTCTGGGACATGCGTCAGCCT-CGAGATG-TAAG
1 TAGTGTAAGACATGTCTGGGACATGCGTC-GCCTACGAGATGAT-AG
* *
92261314 CTAGTGTAAGACATGTTTGGGACATGCGTCGGCTACGAGATGATAG
1 -TAGTGTAAGACATGTCTGGGACATGCGTCGCCTACGAGATGATAG
*
92261360 TCAGTGTAAGACCATGTCTAGGACATG
1 T-AGTGTAAGA-CATGTCTGGGACATG
92261387 GCTTTGAATT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
45 4 0.06
46 45 0.71
47 14 0.22
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCGTCGCCTACGAGATGATAG
Found at i:92268953 original size:46 final size:46
Alignment explanation
Indices: 92268860--92269030 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
92268850 GTCACTTGTG
*
92268860 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACA
1 TAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACA
* ** * * *
92268908 -AGTGTTAGTGTAAGGCATGTCTAGGACATGCATCGGCCTCGAGACA
1 TA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACA
* *
92268954 TAAGCCAGTGTAAGACATGTCTGGGACATGCGTCGACTAT-GAGATCA
1 TAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ATCGAGA-CA
** *
92269001 T-ATTCAATGTAAGACCATGTCTGGGACATG
1 TAAGCCAGTGTAAGA-CATGTCTGGGACATG
92269031 GCTTTGACTT
Statistics
Matches: 100, Mismatches: 18, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
46 57 0.57
47 34 0.34
48 9 0.09
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
TAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACA
Found at i:92269020 original size:93 final size:94
Alignment explanation
Indices: 92268860--92269030 Score: 217
Period size: 93 Copynumber: 1.8 Consensus size: 94
92268850 GTCACTTGTG
* * * *
92268860 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGTGTTAGTGTAAGGCA
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACAAGTGTCAATGTAAGCCA
92268925 TGTCTAGGACATGCATCGGCCTCGAGACA
66 TGTCTAGGACATGCATCGGCCTCGAGACA
*
92268954 TAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCGTCGAC-TATGAGATCATA-T-TCAATGTAAG
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-TGAGA-CA-AGTGTCAATGTAAG
*
92269014 ACCATGTCTGGGACATG
63 -CCATGTCTAGGACATG
92269031 GCTTTGACTT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
91 1 0.01
92 19 0.28
93 31 0.46
94 16 0.24
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACAAGTGTCAATGTAAGCCA
TGTCTAGGACATGCATCGGCCTCGAGACA
Found at i:92269059 original size:47 final size:46
Alignment explanation
Indices: 92268862--92269075 Score: 164
Period size: 47 Copynumber: 4.6 Consensus size: 46
92268852 CACTTGTGTA
* * *
92268862 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAG
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCTTCGAC-TTGAGACATG
* ** * * * * * *
92268910 TGTTAGTGTAAG-GCATGTCTAGGACATGCATCGGCCTCGAGACATA
1 AGCCAGTGTAAGACCATGTCTGGGACATGCTTC-GACTTGAGACATG
*
92268956 AGCCAGTGTAAGA-CATGTCTGGGACATGCGTCGACTATGAGATCAT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGCTTCGACT-TGAGA-CATG
** * * *
92269002 ATTCAATGTAAGACCATGTCTGGGACATGGCTTTGACTTGAGATATG
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCTTCGACTTGAGACATG
* * *
92269049 AGCCAGTGTAAAACCGTGTTTGGGACA
1 AGCCAGTGTAAGACCATGTCTGGGACA
92269076 CGGAATTGGC
Statistics
Matches: 131, Mismatches: 28, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
45 3 0.02
46 54 0.41
47 58 0.44
48 16 0.12
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCTTCGACTTGAGACATG
Found at i:92270175 original size:22 final size:22
Alignment explanation
Indices: 92270150--92270212 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
92270140 TCCAATTGAT
*
92270150 CACACGGGCGTGTTGCCTCTTC
1 CACACGGGCGTGTTGCCCCTTC
*
92270172 CACACGGGCGTGTTGCCCCTTT
1 CACACGGGCGTGTTGCCCCTTC
* *
92270194 CATATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
92270213 GTGTCAAATG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 7 0.19
22 30 0.81
ACGTcount: A:0.10, C:0.35, G:0.29, T:0.27
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTTC
Found at i:92272609 original size:40 final size:41
Alignment explanation
Indices: 92272526--92272671 Score: 176
Period size: 40 Copynumber: 3.6 Consensus size: 41
92272516 TTGAATGATG
* * * *
92272526 TCCGGGCTAAGTCCCGAAGTC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
92272566 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92272606 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92272647 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92272672 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 81 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:92272678 original size:80 final size:80
Alignment explanation
Indices: 92272526--92272704 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
92272516 TTGAATGATG
* * *
92272526 TCCGGGCTAAGTCCCGAAGTCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
92272591 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
92272606 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
92272669 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
92272686 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
92272705 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 59 0.71
81 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:92280339 original size:80 final size:80
Alignment explanation
Indices: 92280189--92280365 Score: 191
Period size: 80 Copynumber: 2.2 Consensus size: 80
92280179 GAATGATGTT
* * *
92280189 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 CGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGA
*
92280254 GCGAGTTA-CTAAATC
66 ACGAG-TAGCTAAATC
* * * * *
92280269 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTT
1 CGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTT
*
92280332 GAACGAGTAGCTATATC
64 GAACGAGTAGCTAAATC
* *
92280349 C-GGTTAAATTCCGAAGG
1 CGGGTTAAGTCCCGAAGG
92280366 TACGTGATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 17 0.21
80 58 0.71
81 7 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
CGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGA
ACGAGTAGCTAAATC
Done.