Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 285 of 356
Found at i:92888723 original size:14 final size:14
Alignment explanation
Indices: 92888692--92888740 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
92888682 CGGGCCCGTT
92888692 AAAATCAAAAAATCCA
1 AAAATCAAAAAA--CA
*
92888708 AAAATTAAAAAACA
1 AAAATCAAAAAACA
* *
92888722 AAAATCACAAAATA
1 AAAATCAAAAAACA
92888736 AAAAT
1 AAAAT
92888741 GTAATAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 18 0.62
16 11 0.38
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAATCAAAAAACA
Found at i:92888734 original size:22 final size:21
Alignment explanation
Indices: 92888699--92888739 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
92888689 GTTAAAATCA
92888699 AAAAATCCAAAAATTAAAAAAC
1 AAAAATCCAAAAA-TAAAAAAC
92888721 AAAAAT-CACAAAATAAAAA
1 AAAAATCCA-AAAATAAAAA
92888740 TGTAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAAATCCAAAAATAAAAAAC
Found at i:92890690 original size:17 final size:16
Alignment explanation
Indices: 92890670--92890711 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
92890660 TATTTTAAAA
92890670 ATTTATTTATATATATT
1 ATTTATTTATAT-TATT
*
92890687 ATTTATTCTATATTTTT
1 ATTTATT-TATATTATT
92890704 ATTTATTT
1 ATTTATTT
92890712 GATGATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 1 0.04
17 17 0.74
18 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (16 bp):
ATTTATTTATATTATT
Found at i:92895822 original size:8 final size:8
Alignment explanation
Indices: 92895809--92895878 Score: 59
Period size: 9 Copynumber: 8.1 Consensus size: 8
92895799 AATAAAAATC
92895809 AAAAGAAA
1 AAAAGAAA
92895817 AAAAGAAA
1 AAAAGAAA
*
92895825 AAAATTAAA
1 AAAA-GAAA
*
92895834 AAAATAAA
1 AAAAGAAA
*
92895842 ATAAAAAAA
1 A-AAAGAAA
*
92895851 TAAAAAAAA
1 -AAAAGAAA
92895860 AAGAAGAAA
1 AA-AAGAAA
92895869 GAAAAGAAA
1 -AAAAGAAA
92895878 A
1 A
92895879 GGCCAAGGCA
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
8 20 0.37
9 31 0.57
10 3 0.06
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.07
Consensus pattern (8 bp):
AAAAGAAA
Found at i:92895827 original size:22 final size:20
Alignment explanation
Indices: 92895802--92895861 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 20
92895792 AGATTGAAAT
92895802 AAAAATCAAAAGAAAAAAAGAA
1 AAAAAT-AAAA-AAAAAAAGAA
*
92895824 AAAAATTAAAAAAATAAAATAA
1 AAAAA-TAAAAAAA-AAAAGAA
92895846 AAAAATAAAAAAAAAA
1 AAAAATAAAAAAAAAA
92895862 GAAGAAAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
20 3 0.09
21 11 0.31
22 20 0.57
23 1 0.03
ACGTcount: A:0.85, C:0.02, G:0.03, T:0.10
Consensus pattern (20 bp):
AAAAATAAAAAAAAAAAGAA
Found at i:92897026 original size:64 final size:64
Alignment explanation
Indices: 92896948--92897197 Score: 350
Period size: 64 Copynumber: 4.0 Consensus size: 64
92896938 TCATTCATAA
* * * * *
92896948 CACATTTAGTTAGGAGCATTTGATTTATTTCGATTATAGAATCTTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
92897012 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * * *
92897076 CACATCTAGTTAGGAACATTTTATTCATTTTGATCATAGCATCCTAATTGTTTGACATGAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* *
92897140 --C-TC-A--TAGGAGCATTTGATTCAGTTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
92897198 AAATACAGAA
Statistics
Matches: 169, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
58 47 0.28
60 1 0.01
61 2 0.01
62 1 0.01
64 118 0.70
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:92897609 original size:177 final size:177
Alignment explanation
Indices: 92897305--92897861 Score: 802
Period size: 176 Copynumber: 3.2 Consensus size: 177
92897295 ATTGAAGATT
* * *
92897305 ACCAGCCTTATCTCTGTGAGGTAGCAAGAGAGCAGGTTGGCGTTTGTAGTCTTATCTTCTTAAGG
1 ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAGG
** * * *
92897370 TAGGAAGGAAGCAGACTGAGGATTGCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAA
66 TAACAAGGAAGCAGACTGAAGATTG-AAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
*
92897434 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGGTTTTAGCC
130 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
* *
92897482 ACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGACGATTGTAGTCTTATCTTCTTGAGG
1 ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAGG
* * *
92897547 TAACAAGGAAACAGACTGAATATTGAAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAG
66 TAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAG
*
92897612 ATGGCGAATCTTATCTCCATG-A-CAGGCAATGGAGCAGATTTTATCC
131 ATGGCGAATCTTATCTCCATGTATC-GGCAATGGAGCAGATTTTAGCC
** * * *
92897658 A-TTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTTTAGTCTTATCTTCCTGAG
1 ACCAG-CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAG
* *
92897722 GTAACAAGGAAGCAGACTGAAGATTGAAGATCTT-TTTCCCTAAGCAGTAGTAGAGCAGATCAAA
65 GTAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAA
* *
92897786 GATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGTC
130 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
* *
92897834 ACTAGTCTTATCT-TCCTGAGGTAGCAAG
1 ACCAGCCTTATCTCT-CTGAGGTAGCAAG
92897862 GAAGCAGACT
Statistics
Matches: 341, Mismatches: 32, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
175 51 0.15
176 153 0.45
177 137 0.40
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (177 bp):
ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAGG
TAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAG
ATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
Found at i:92897964 original size:133 final size:132
Alignment explanation
Indices: 92897704--92897981 Score: 405
Period size: 133 Copynumber: 2.1 Consensus size: 132
92897694 TTGGTGATTT
* *
92897704 TAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGAAGATCTTTTTCCCTAAGCAG
1 TAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGAAGATCTTTCTCCCTAAACAG
* * * *
92897769 TAGTAGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGTC
66 TAGTAGAGCAGATCAAAGACGGCAAATCTTATCTCCATGTATCAGCAATGGAGCAGAATTTAGCC
92897834 AC
131 AC
*
92897836 TAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACA
1 TAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGAAGATCTT-TCTCCCTAAACA
* * * ** *
92897901 GTTGTGGAGCAGATCAATGACGGTGAATCTTATCTCCATGTATCAGTAATGGAGCAGAATTTAGC
65 GTAGTAGAGCAGATCAAAGACGGCAAATCTTATCTCCATGTATCAGCAATGGAGCAGAATTTAGC
92897966 CAC
130 CAC
* *
92897969 CAGTCCTAT-TTCC
1 TAGTCTTATCTTCC
92897982 CTAAAGTTGC
Statistics
Matches: 130, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
132 55 0.42
133 75 0.58
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (132 bp):
TAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGAAGATCTTTCTCCCTAAACAG
TAGTAGAGCAGATCAAAGACGGCAAATCTTATCTCCATGTATCAGCAATGGAGCAGAATTTAGCC
AC
Found at i:92898136 original size:14 final size:14
Alignment explanation
Indices: 92898119--92898160 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
92898109 GTTAAAATAA
*
92898119 AAAAAACAAAAATT
1 AAAAAACAAAAATC
92898133 AAAAAACAAAAATC
1 AAAAAACAAAAATC
* *
92898147 ACAAAATAAAAATC
1 AAAAAACAAAAATC
92898161 CAATAAATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAAACAAAAATC
Found at i:92898136 original size:15 final size:14
Alignment explanation
Indices: 92898112--92898159 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
92898102 CGGGCCCGTT
92898112 AAAATAAAAAAAACA
1 AAAAT-AAAAAAACA
*
92898127 AAAATTAAAAAACA
1 AAAATAAAAAAACA
* * *
92898141 AAAATCACAAAATA
1 AAAATAAAAAAACA
92898155 AAAAT
1 AAAAT
92898160 CCAATAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 24 0.83
15 5 0.17
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAATAAAAAAACA
Found at i:92898136 original size:21 final size:23
Alignment explanation
Indices: 92898110--92898159 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
92898100 CCCGGGCCCG
92898110 TTAAAATAA-AAAAAACA-AAAA
1 TTAAAATAACAAAAAACACAAAA
*
92898131 TTAAAA-AACAAAAATCACAAAA
1 TTAAAATAACAAAAAACACAAAA
*
92898153 TAAAAAT
1 TTAAAAT
92898160 CCAATAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 2 0.08
21 13 0.54
22 9 0.38
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (23 bp):
TTAAAATAACAAAAAACACAAAA
Found at i:92902140 original size:43 final size:43
Alignment explanation
Indices: 92902079--92902164 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
92902069 ACAAAGTAAG
92902079 ATATTCTGAATGCTTGATGGGGGAGTTAAGAATTGATGAAGTT
1 ATATTCTGAATGCTTGATGGGGGAGTTAAGAATTGATGAAGTT
92902122 ATATTCTGAATGCTTGATGGGGGAGTTAAGAATTGATGAAGTT
1 ATATTCTGAATGCTTGATGGGGGAGTTAAGAATTGATGAAGTT
92902165 CAACTTACAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (43 bp):
ATATTCTGAATGCTTGATGGGGGAGTTAAGAATTGATGAAGTT
Found at i:92908727 original size:37 final size:37
Alignment explanation
Indices: 92908677--92908749 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
92908667 GACCGGTGAA
**
92908677 ATCGGACGTCCCTCATCCATTATGGAGTCGAAGTCAG
1 ATCGGACGTCCCTCATCCATTACAGAGTCGAAGTCAG
92908714 ATCGGACGTCCCTCATCCATTACAGAGTCGAAGTCA
1 ATCGGACGTCCCTCATCCATTACAGAGTCGAAGTCA
92908750 ACTAATTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (37 bp):
ATCGGACGTCCCTCATCCATTACAGAGTCGAAGTCAG
Found at i:92914312 original size:26 final size:26
Alignment explanation
Indices: 92914283--92914390 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
92914273 TGGTACAAAT
92914283 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
92914309 TGATAATGGATTAGATAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92914335 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
92914361 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92914387 TGAT
1 TGAT
92914391 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92923533 original size:18 final size:18
Alignment explanation
Indices: 92923510--92923582 Score: 101
Period size: 18 Copynumber: 4.1 Consensus size: 18
92923500 CAATCCCAAC
* *
92923510 TATTGTATACGTGAACAG
1 TATTGTATACGTAAATAG
*
92923528 TATTGTATATGTAAATAG
1 TATTGTATACGTAAATAG
* *
92923546 TATTGTATACGTTAATGG
1 TATTGTATACGTAAATAG
92923564 TATTGTATACGTAAATAG
1 TATTGTATACGTAAATAG
92923582 T
1 T
92923583 GTCGTAAATG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.34, C:0.05, G:0.19, T:0.41
Consensus pattern (18 bp):
TATTGTATACGTAAATAG
Found at i:92925112 original size:27 final size:26
Alignment explanation
Indices: 92925064--92925118 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
92925054 CCAACTCTAC
92925064 TGGGTCTAATGTTCATGCTTCTTAGTT
1 TGGGTCTAATGTTCATGCTTCTTA-TT
* *
92925091 TGGGTCTAACT-TTGATGGTTCTTATT
1 TGGGTCTAA-TGTTCATGCTTCTTATT
92925117 TG
1 TG
92925119 TATGTCCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.16
27 20 0.80
28 1 0.04
ACGTcount: A:0.15, C:0.13, G:0.24, T:0.49
Consensus pattern (26 bp):
TGGGTCTAATGTTCATGCTTCTTATT
Found at i:92932832 original size:15 final size:16
Alignment explanation
Indices: 92932809--92932849 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
92932799 GGTTCTCTTA
92932809 TGGTCAAAATTCAG-C
1 TGGTCAAAATTCAGCC
*
92932824 TGGTTAAAA-TCAGCC
1 TGGTCAAAATTCAGCC
92932839 TGGTCAAAATT
1 TGGTCAAAATT
92932850 GGTGTCCAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 4 0.18
15 17 0.77
16 1 0.05
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (16 bp):
TGGTCAAAATTCAGCC
Found at i:92936113 original size:19 final size:19
Alignment explanation
Indices: 92936091--92936166 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 19
92936081 TTAATTAAAA
92936091 TTTTAAATTTTAAAAATAT
1 TTTTAAATTTTAAAAATAT
* * *
92936110 TTTTATATTTTTAATAT-T
1 TTTTAAATTTTAAAAATAT
*
92936128 TTTTAATTTTTTTAAAAATAAT
1 TTTTAA--ATTTTAAAAAT-AT
* *
92936150 TTTTAATTTTTTAAAAT
1 TTTTAAATTTTAAAAAT
92936167 TTTAAAAAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
18 6 0.13
19 14 0.31
20 18 0.40
22 7 0.16
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAAATTTTAAAAATAT
Found at i:92936119 original size:8 final size:9
Alignment explanation
Indices: 92936105--92936169 Score: 53
Period size: 8 Copynumber: 6.9 Consensus size: 9
92936095 AAATTTTAAA
92936105 AATATTTTT
1 AATATTTTT
92936114 -ATATTTTT
1 AATATTTTT
92936122 AATATTTTTT
1 AATA-TTTTT
*
92936132 AATTTTTTT
1 AATATTTTT
92936141 AAAAATAATTTTT
1 ---AAT-ATTTTT
92936154 AAT-TTTTT
1 AATATTTTT
*
92936162 AAAATTTT
1 AATATTTT
92936170 AAAAAAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
8 15 0.33
9 12 0.26
10 11 0.24
12 3 0.07
13 5 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
AATATTTTT
Found at i:92936175 original size:30 final size:32
Alignment explanation
Indices: 92936116--92936180 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 32
92936106 ATATTTTTAT
** * *
92936116 ATTTTTAATATTTTTTAATTTTTTTAAAAATA
1 ATTTTTAATATTTTTTAAAATTTTAAAAAAGA
92936148 ATTTTT-A-ATTTTTTAAAATTTTAAAAAAGA
1 ATTTTTAATATTTTTTAAAATTTTAAAAAAGA
92936178 ATT
1 ATT
92936181 ATTTGCTGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 22 0.76
31 1 0.03
32 6 0.21
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (32 bp):
ATTTTTAATATTTTTTAAAATTTTAAAAAAGA
Found at i:92937181 original size:3 final size:3
Alignment explanation
Indices: 92937173--92937197 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
92937163 AAATAACACA
92937173 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
92937198 AGGGGATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:92939795 original size:13 final size:13
Alignment explanation
Indices: 92939777--92939802 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92939767 ACACTACTTT
92939777 GTGACTTTTGTTG
1 GTGACTTTTGTTG
92939790 GTGACTTTTGTTG
1 GTGACTTTTGTTG
92939803 ATGAAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.31, T:0.54
Consensus pattern (13 bp):
GTGACTTTTGTTG
Found at i:92944431 original size:25 final size:25
Alignment explanation
Indices: 92944396--92944584 Score: 245
Period size: 25 Copynumber: 7.6 Consensus size: 25
92944386 ATACATGTAT
*
92944396 GCTCATACGAGCTAAATAACGGGAA
1 GCTCATACGAGCTGAATAACGGGAA
* *
92944421 GCTCATCCGAGCTGAATAACGAGAA
1 GCTCATACGAGCTGAATAACGGGAA
92944446 GCTCATACGAGCTGAATAACGGGAA
1 GCTCATACGAGCTGAATAACGGGAA
*
92944471 GCTAATACGAGCTGAATAACGGGAA
1 GCTCATACGAGCTGAATAACGGGAA
* * * *
92944496 GTTCATGCAAGCTGAATAATGGGAA
1 GCTCATACGAGCTGAATAACGGGAA
* * *
92944521 GCTCATATGAGCTGAATAGCGAGAA
1 GCTCATACGAGCTGAATAACGGGAA
*
92944546 GCTCA-AGCGAGCTGAATAACGAGAA
1 GCTCATA-CGAGCTGAATAACGGGAA
*
92944571 GCTCATGCGAGCTG
1 GCTCATACGAGCTG
92944585 TGGTGTATCT
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
24 1 0.01
25 140 0.99
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGGGAA
Found at i:92951952 original size:21 final size:20
Alignment explanation
Indices: 92951928--92951973 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
92951918 TGAAATGCAA
92951928 TCAACCTGAAA-TGAATTAAAT
1 TCAACCT-AAATTG-ATTAAAT
*
92951949 TCAAACTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
92951969 T-AACC
1 TCAACC
92951974 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 11 0.50
21 8 0.36
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:92954676 original size:12 final size:12
Alignment explanation
Indices: 92954661--92954695 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
92954651 TACAGTAACT
*
92954661 GATATAGATTCA
1 GATATAGATGCA
*
92954673 GATACAGATGCA
1 GATATAGATGCA
92954685 GATATAGATGC
1 GATATAGATGC
92954696 GGATTCAGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (12 bp):
GATATAGATGCA
Found at i:92958941 original size:20 final size:20
Alignment explanation
Indices: 92958903--92958941 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
92958893 AAATATTATG
*
92958903 TAACCAAATCAATTTTCTAA
1 TAACCAAATCAATTATCTAA
92958923 TAACC-AATCAGATTATCTA
1 TAACCAAATCA-ATTATCTA
92958942 GAGTTCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.33
Consensus pattern (20 bp):
TAACCAAATCAATTATCTAA
Found at i:92959690 original size:43 final size:43
Alignment explanation
Indices: 92959629--92959813 Score: 218
Period size: 43 Copynumber: 4.4 Consensus size: 43
92959619 TTATTTGAAA
* *
92959629 AAACGCCGCTATAGAACATGA-CTTTCAGCAGCAC-TTTCCACAC
1 AAACGCCGCTATAGAACATGACCTTT-AGCGGCGCTTTTCC-CAC
92959672 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * *
92959715 AAAAGCTGCTATAGAACATGACCTTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
92959758 GAACGCCACTATAG-ACGTGACTTTTAGTGGCGC-TTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
*
92959799 AAATG-CGCTATAGAA
1 AAACGCCGCTATAGAA
92959814 TGTGAGCTTT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
40 7 0.06
41 12 0.10
42 17 0.14
43 80 0.64
44 9 0.07
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:92959824 original size:83 final size:87
Alignment explanation
Indices: 92959636--92959835 Score: 241
Period size: 86 Copynumber: 2.4 Consensus size: 87
92959626 AAAAAACGCC
* *
92959636 GCTATAGAACATGA-CTTTCAGCAGCAC-TTTCCACACAAACGCCGCTATAGAACATGACCTTTA
1 GCTATAGAACATGACCTTT-AGTAGCACTTTTCCACACAAACGCCACTATAGAACATGACCTTTA
92959699 GCGGCGCTTTTCCCACAAAAGCT
65 GCGGCGCTTTTCCCACAAAAGCT
* * * * *
92959722 GCTATAGAACATGACCTTTAGTGGCGCTTTTCC-CACGAACGCCACTATAG-ACGTGACTTTTAG
1 GCTATAGAACATGACCTTTAGTAGCACTTTTCCACACAAACGCCACTATAGAACATGACCTTTAG
* *
92959785 TGGCGC-TTTCCCACAAATGC-
66 CGGCGCTTTTCCCACAAAAGCT
** *
92959805 GCTATAGAATGTGAGCTTTAGTAGCACTTTT
1 GCTATAGAACATGACCTTTAGTAGCACTTTT
92959836 ACTGAAAATG
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
83 26 0.27
84 13 0.13
85 16 0.16
86 34 0.35
87 9 0.09
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (87 bp):
GCTATAGAACATGACCTTTAGTAGCACTTTTCCACACAAACGCCACTATAGAACATGACCTTTAG
CGGCGCTTTTCCCACAAAAGCT
Found at i:92960089 original size:25 final size:25
Alignment explanation
Indices: 92959991--92960083 Score: 168
Period size: 25 Copynumber: 3.7 Consensus size: 25
92959981 CTTCTTGTAA
92959991 CAACCAAAAACAACAAATACAAATC
1 CAACCAAAAACAACAAATACAAATC
*
92960016 CAACCAAAAACAGCAAATACAAATC
1 CAACCAAAAACAACAAATACAAATC
*
92960041 CAACCAAAAACAACAAATATAAATC
1 CAACCAAAAACAACAAATACAAATC
92960066 CAACCAAAAACAACAAAT
1 CAACCAAAAACAACAAAT
92960084 CTAAATAATA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.63, C:0.27, G:0.01, T:0.09
Consensus pattern (25 bp):
CAACCAAAAACAACAAATACAAATC
Found at i:92964048 original size:7 final size:7
Alignment explanation
Indices: 92964032--92964062 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
92964022 TCAAAACCCC
92964032 TAAA-CA
1 TAAACCA
92964038 TAAACCA
1 TAAACCA
92964045 TAAACCA
1 TAAACCA
92964052 TAAACCA
1 TAAACCA
92964059 TAAA
1 TAAA
92964063 ATCAAAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 20 0.83
ACGTcount: A:0.61, C:0.23, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCA
Found at i:92965096 original size:41 final size:41
Alignment explanation
Indices: 92965051--92965135 Score: 116
Period size: 41 Copynumber: 2.1 Consensus size: 41
92965041 TTTACGAGAA
* *
92965051 AAATGCATCTAATGCTAGACCTTTTGCAGCGTTTTTCTCAT
1 AAATGCAGCTAATGCTAGACCTTTTGCAGCATTTTTCTCAT
* * * *
92965092 AAATGCCGCTACTGCTTGACCTTTTGTAGCATTTTTCTCAT
1 AAATGCAGCTAATGCTAGACCTTTTGCAGCATTTTTCTCAT
92965133 AAA
1 AAA
92965136 CGCCACTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (41 bp):
AAATGCAGCTAATGCTAGACCTTTTGCAGCATTTTTCTCAT
Found at i:92965588 original size:24 final size:24
Alignment explanation
Indices: 92965560--92965605 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
92965550 TCACCCTAAC
92965560 GCATACTTTGGTTCACGTTTCCAT
1 GCATACTTTGGTTCACGTTTCCAT
92965584 GCATACTTTGGTTCACGTTTCC
1 GCATACTTTGGTTCACGTTTCC
92965606 GTCGTCGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.15, C:0.26, G:0.17, T:0.41
Consensus pattern (24 bp):
GCATACTTTGGTTCACGTTTCCAT
Found at i:92968605 original size:21 final size:20
Alignment explanation
Indices: 92968576--92968624 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
92968566 TGGCAAACTT
92968576 AAAACATGTAAAACATACATAC
1 AAAA-ATGTAAAACATACAT-C
** *
92968598 AAAAATGTACGACATACATT
1 AAAAATGTAAAACATACATC
92968618 AAAAATG
1 AAAAATG
92968625 AATAAGTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.29
21 13 0.54
22 4 0.17
ACGTcount: A:0.57, C:0.14, G:0.08, T:0.20
Consensus pattern (20 bp):
AAAAATGTAAAACATACATC
Found at i:92969272 original size:20 final size:18
Alignment explanation
Indices: 92969232--92969279 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
92969222 AATATTTAAT
92969232 ATATAAT-AAAATAAATA
1 ATATAATAAAAATAAATA
*
92969249 ATATAATAAAAATATATATC
1 ATATAATAAAAATA-A-ATA
92969269 ATATAATAAAA
1 ATATAATAAAA
92969280 TTTTTAAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 7 0.26
18 6 0.22
19 1 0.04
20 13 0.48
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (18 bp):
ATATAATAAAAATAAATA
Found at i:92969398 original size:13 final size:13
Alignment explanation
Indices: 92969354--92969403 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
92969344 GAGTAATTTT
92969354 TATATAAT-AAAA
1 TATATAATAAAAA
* * *
92969366 TAAATAATATACA
1 TATATAATAAAAA
*
92969379 TACATAATAAAAA
1 TATATAATAAAAA
92969392 TATATAATAAAA
1 TATATAATAAAA
92969404 GAGAAGATGT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 7 0.23
13 23 0.77
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (13 bp):
TATATAATAAAAA
Found at i:92969545 original size:26 final size:26
Alignment explanation
Indices: 92969515--92969670 Score: 86
Period size: 26 Copynumber: 5.6 Consensus size: 26
92969505 TAAATTTAAT
92969515 ATATAATAATATATAATTTATAAAAA
1 ATATAATAATATATAATTTATAAAAA
* * *
92969541 ATATAAAGAAATATATAA--AATAAAAT
1 ATAT-AA-TAATATATAATTTATAAAAA
*
92969567 ATATAATAAAATATAATTTATAGATAAGA
1 ATATAATAATATATAATTTATA-A-AA-A
* * **
92969596 TATATAATAAAAAAATGTAATGGATAATAAA
1 -ATATAAT---AATATATAATTTATAA-AAA
92969627 A-ATAAT-ATATATAACTATTATAAAAAA
1 ATATAATAATATATAA-T-TTAT-AAAAA
92969654 ATAATAATAATATATAA
1 AT-ATAATAATATATAA
92969671 AGTATTTAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 30
0.69 0.10 0.21
Matches are distributed among these distances:
24 8 0.08
25 8 0.08
26 18 0.18
27 9 0.09
28 13 0.13
29 10 0.10
30 16 0.16
31 1 0.01
32 4 0.04
33 12 0.12
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.33
Consensus pattern (26 bp):
ATATAATAATATATAATTTATAAAAA
Found at i:92969555 original size:19 final size:18
Alignment explanation
Indices: 92969533--92969582 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
92969523 ATATATAATT
92969533 TATAAAAAATATAAAGAAA
1 TATAAAAAATATAAA-AAA
* *
92969552 TAT-ATAAA-ATAAAATA
1 TATAAAAAATATAAAAAA
92969568 TATAATAAAATATAA
1 TATAA-AAAATATAA
92969583 TTTATAGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
16 5 0.20
17 6 0.24
18 7 0.28
19 7 0.28
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
TATAAAAAATATAAAAAA
Found at i:92969568 original size:14 final size:12
Alignment explanation
Indices: 92969512--92969581 Score: 61
Period size: 12 Copynumber: 5.5 Consensus size: 12
92969502 TTATAAATTT
92969512 AATATATAATAA
1 AATATATAATAA
* *
92969524 TATATAATTTATAA
1 AATAT-A-TAATAA
*
92969538 AAAATATAA-AGA
1 AATATATAATA-A
92969550 AATATATAAAATAA
1 AATATAT--AATAA
92969564 AATATATAATAA
1 AATATATAATAA
92969576 AATATA
1 AATATA
92969582 ATTTATAGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
11 1 0.02
12 24 0.52
13 2 0.04
14 18 0.39
15 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (12 bp):
AATATATAATAA
Found at i:92971213 original size:41 final size:41
Alignment explanation
Indices: 92971168--92971301 Score: 103
Period size: 41 Copynumber: 3.1 Consensus size: 41
92971158 CTCTCCATCG
92971168 AACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTA
1 AACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTA
* * * * *
92971209 AACAC-GTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTC--CGTCG
1 AACACAGAGATA-CCAAAT---C-A--TCTTAGATTTGCT-TCAACGT-A
* *
92971256 AACACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTA
1 AACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTA
92971297 AACAC
1 AACAC
92971302 GTGAAAGTCA
Statistics
Matches: 69, Mismatches: 12, Indels: 24
0.66 0.11 0.23
Matches are distributed among these distances:
40 6 0.09
41 27 0.39
42 2 0.03
43 1 0.01
44 2 0.03
45 1 0.01
46 3 0.04
47 22 0.32
48 5 0.07
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (41 bp):
AACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTA
Found at i:92971298 original size:88 final size:88
Alignment explanation
Indices: 92971147--92971382 Score: 382
Period size: 88 Copynumber: 2.7 Consensus size: 88
92971137 CATGTCGATA
* * * *
92971147 TCTTCGATCGGCTCTCCATCGAACACAGAGATACCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCCGCTCTCCGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAAC
92971212 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
*
92971235 TCTTCGATCTGCTCTCCGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAAC
1 TCTTCGATCCGCTCTCCGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAAC
*
92971300 ACGTGAAAGTCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTATG
* * * *
92971323 TCTTCGATCCGCTCTCCGTCGAACACAGAGATGCCAAATCGTCTTGGATCTGCCTCAATG
1 TCTTCGATCCGCTCTCCGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAATG
92971383 AAGGTCAAAT
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 138 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (88 bp):
TCTTCGATCCGCTCTCCGTCGAACACAGAGATGCCAAATCATCTTAGATTTGCTTCAATGTAAAC
ACGTGAAAGCCAAATCAGCTATG
Found at i:92971461 original size:45 final size:45
Alignment explanation
Indices: 92971425--92971806 Score: 466
Period size: 45 Copynumber: 8.7 Consensus size: 45
92971415 CCCATCGAAC
*
92971425 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCATCCATT
1 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
* *
92971470 ATAGAGAGATAAGATCTCTCATCTTGGATCTACTCCCCGTCCATT
1 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
* * *
92971515 A-AGGAGAGATACGATCTGTCATCTTGTATCTACTCCCCATCCATT
1 ACA-GAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
*
92971560 ACAGAGAGATAAGATCTGTCATCTTGGATCTGC-CCCCGTCCATT
1 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
* * *
92971604 ACAGAGAGATAAGATCCGCCATCTTGGATCT--GCCCCG---A-T
1 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
* * * * * * *
92971643 ---GA-AGGTCAA-ATTTGCTACGTCTTCGATCTGCTCCCCGTCGAAT
1 ACAGAGAGAT-AAGATCTG-T-CATCTTGGATCTACTCCCCGTCCATT
*
92971686 ACAGAGAGATAAGAGCTGTCATCTTGGATCTACTCCCCGTCCATT
1 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
92971731 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
1 ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
*
92971776 ACAGAGAGATAAGATCTGTCATCTTAGATCT
1 ACAGAGAGATAAGATCTGTCATCTTGGATCT
92971807 GCCCCCCGAT
Statistics
Matches: 290, Mismatches: 30, Indels: 34
0.82 0.08 0.10
Matches are distributed among these distances:
35 6 0.02
36 4 0.01
37 10 0.03
39 6 0.02
40 1 0.00
42 1 0.00
43 6 0.02
44 40 0.14
45 204 0.70
46 6 0.02
47 6 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (45 bp):
ACAGAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATT
Found at i:92971890 original size:174 final size:171
Alignment explanation
Indices: 92971518--92971929 Score: 574
Period size: 174 Copynumber: 2.4 Consensus size: 171
92971508 GTCCATTAAG
* * *
92971518 GAGAGATACGATCTGTCATCTTGTATCTACTCCCCATCCATTACAGAGAGATAAGATCTGTCATC
1 GAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCATC
* *
92971583 TTGGATCTGCCCCCGTCCATTACAGAGAGATAAGATCCGCCATCTTGGATCTGCCCCGATGAAGG
66 TTGGATCTACCCCCGTCCATTACAGAGAGATAAGATCCGCCATCTTAGATCTGCCCCGATGAAGG
* * * * *
92971648 TCAAATTTGCTACGTCTTCGATCTGCTCCCCGTCGAATACA
131 TCAAATCTACTACATCTTCAATCTGCTCCCCATCGAATACA
*
92971689 GAGAGATAAGAGCTGTCATCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCATC
1 GAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCATC
* *
92971754 TTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCATCTTAGATCTGCCCCCCGATGA
66 TTGGATCTAC-CCCCGTCCATTACAGAGAGATAAGATCCGCCATCTTAGATCTG--CCCCGATGA
* * * * *
92971819 AGGTCAGATCTATTATATCTTCAATCTGTTCCCTATCGAATACA
128 AGGTCAAATCTACTACATCTTCAATCTGCTCCCCATCGAATACA
* * * * *
92971863 GAGAGATAAGATCTATCATCTTGGATCTGCTCTCCGTCTATTTCAGAGAGATAAGATCT-TCTAT
1 GAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTC-AT
92971927 CTT
65 CTT
92971930 CAACTTGTTC
Statistics
Matches: 213, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
171 70 0.33
172 40 0.19
173 2 0.01
174 101 0.47
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (171 bp):
GAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGTCCATTACAGAGAGATAAGATCTGTCATC
TTGGATCTACCCCCGTCCATTACAGAGAGATAAGATCCGCCATCTTAGATCTGCCCCGATGAAGG
TCAAATCTACTACATCTTCAATCTGCTCCCCATCGAATACA
Found at i:92975148 original size:131 final size:133
Alignment explanation
Indices: 92974953--92975192 Score: 367
Period size: 131 Copynumber: 1.8 Consensus size: 133
92974943 AAGTATTCTT
* * * * * *
92974953 TTAAAAGTTCTTCAAAACGAAAAACGAGATTCGATGTTTGGTAATTCGCGGAATCGTGCCCTAAC
1 TTAAAAGTTCTCCAAAACGAAAAACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAAC
*
92975018 GTGTTGGGTTACAATTTCGCTTTTGCTCAAAATAATCGAATATCGCTTTGAAATTTCATTCATGT
66 GTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCGCTTTGAAATTTCATTCATGT
92975083 TTG
131 TTG
* *
92975086 TTAAAA-TTCTCCCAAACG-AAGACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAAC
1 TTAAAAGTTCTCCAAAACGAAAAACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAAC
* *
92975149 GTGTTGGGTTACAATTTTGCGTTTGCTCAAAATAATCGAGTATC
66 GTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATC
92975193 CCTTCATGAT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
131 80 0.83
132 10 0.10
133 6 0.06
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (133 bp):
TTAAAAGTTCTCCAAAACGAAAAACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAAC
GTGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCGCTTTGAAATTTCATTCATGT
TTG
Found at i:92975222 original size:131 final size:131
Alignment explanation
Indices: 92974967--92975222 Score: 338
Period size: 131 Copynumber: 1.9 Consensus size: 131
92974957 AAGTTCTTCA
* * * * *
92974967 AAACGAAAAACGAGATTCGATGTTTGGTAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTACAA
1 AAACGAAAAACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAACGTGTTGGGTTACAA
* * * * *
92975032 TTTCGCTTTTGCTCAAAATAATCGAATATCGCTTTGAAATTTCATTCATGTTTGTTAAAATTCTC
66 TTTCGCGTTTGCTCAAAATAATCGAATATCCCTTTG-AATTTCATTCATATCTGCTAAAATTCTC
92975097 CC
130 CC
*
92975099 AAACG-AAGACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAACGTGTTGGGTTACAA
1 AAACGAAAAACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAACGTGTTGGGTTACAA
* *
92975163 TTTTGCGTTTGCTCAAAATAATCGAGTATCCCTTCATG-ATTTCATTCATATCCT-CTAAAA
66 TTTCGCGTTTGCTCAAAATAATCGAATATCCCTT--TGAATTTCATTCATAT-CTGCTAAAA
92975223 ATTTTTAAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
131 100 0.93
132 6 0.06
133 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (131 bp):
AAACGAAAAACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAACGTGTTGGGTTACAA
TTTCGCGTTTGCTCAAAATAATCGAATATCCCTTTGAATTTCATTCATATCTGCTAAAATTCTCC
C
Found at i:92975247 original size:131 final size:130
Alignment explanation
Indices: 92974954--92975247 Score: 313
Period size: 131 Copynumber: 2.2 Consensus size: 130
92974944 AGTATTCTTT
* * * * * * * * *
92974954 TAAAAGTTCTTCAAAACGAAAAACGAGATTCGATGTTTGGTAATTCGCGGAATCGTGCCCTAACG
1 TAAAAATTCTCCAAAAC-AAAGACAACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAACG
* * * *
92975019 TGTTGGGTTACAATTTCGCTTTTGCTCAAAATAATCGAATATCGCTTTGAAATTTCATTCATGTT
65 TGTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTTG-AATTTCATTCATATC
*
92975084 TG
129 TC
* * * *
92975086 TTAAAATTCTCCCAAACGAAGACGACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAACGT
1 TAAAAATTCTCCAAAACAAAGACAACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAACGT
* *
92975151 GTTGGGTTACAATTTTGCGTTTGCTCAAAATAATCGAGTATCCCTTCATG-ATTTCATTCATATC
66 GTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTT--TGAATTTCATTCATAT-
92975215 CTC
128 CTC
** * *
92975218 TAAAAATT-TTTAAAACAAAGGCAATATTCG
1 TAAAAATTCTCCAAAACAAAGACAACATTCG
92975248 GCGTTTGACA
Statistics
Matches: 133, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
131 110 0.83
132 21 0.16
133 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (130 bp):
TAAAAATTCTCCAAAACAAAGACAACATTCGATATTTAGTAATTCACGGAATCGAGCCCTAACGT
GTTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTTGAATTTCATTCATATCTC
Found at i:92987249 original size:44 final size:44
Alignment explanation
Indices: 92987144--92987432 Score: 344
Period size: 44 Copynumber: 6.5 Consensus size: 44
92987134 GGCAAATCCT
* * * *
92987144 GCAGATTTTGCATCTCTGAATTGTCAGAGAGTAGATTCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGA-TCGAAGATA
* * * * *
92987189 GCAAATTTGGCGTCTCTATATTGGCAGAGAGTAGATCAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
92987233 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * ** *
92987277 GCAGATTTGGCATTTCTGTATTGGCGGAGAATAGATCGAAGACA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
92987321 GCAAATTTGGCGTCTCTGTATTGTCAGAGAGCAGATTCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGA-TCGAAGATA
* * ** *
92987366 GCAGATTTGGCGTCTCTGTGTTGGTGGAGAGCAGATCGAAGAAA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
92987410 GCAGATTTGGTATCTCTGTATTG
1 GCAGATTTGGCATCTCTGTATTG
92987433 TCTCATGTCT
Statistics
Matches: 209, Mismatches: 34, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
44 142 0.68
45 67 0.32
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (44 bp):
GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
Found at i:92987581 original size:44 final size:44
Alignment explanation
Indices: 92987480--92987880 Score: 500
Period size: 44 Copynumber: 9.1 Consensus size: 44
92987470 AATCCTGCAA
* * * *
92987480 ATTTGGCATCTCTATATTGTCAGAGAGCAGATTCGAAGATAGTAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGA-TCGAAGATAGCAG
92987525 ATTTGG-AGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCA-TCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
92987569 ATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
92987613 ATTTGGCGTCTCTGTATTGGCGAAGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * * *
92987657 ATTTGGCATCTCTGTATTGTCAGAAAGCAGTTTCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAG-ATCGAAGATAGCAG
* *
92987702 ATTTGGCGTCTCTGTATTGGGGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * * * *
92987746 ATTTGGCGTCTCTTTGTTGGCGAAGAGCAGATCGAAGAAAGCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * * * * *
92987790 ATTTGGCACCTCTATATTGTCAGAGGGCAGATCGAAG-TCAGTAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGAT-AGCAG
* * *
92987834 ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAAATAACAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
92987878 ATT
1 ATT
92987881 GGTGTTCCCG
Statistics
Matches: 307, Mismatches: 44, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
44 242 0.79
45 65 0.21
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (44 bp):
ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
Found at i:92987706 original size:177 final size:176
Alignment explanation
Indices: 92987480--92987880 Score: 554
Period size: 177 Copynumber: 2.3 Consensus size: 176
92987470 AATCCTGCAA
* *
92987480 ATTTGGCATCTCTATATTGTCAGAGAGCAGATTCGAAGATAGTAGATTTGGAGTCTCTGTATTGG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAG-TTCGAAGATAGCAGATTTGGAGTCTCTGTATTGG
* *
92987545 CGGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGATAG
65 CGGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTAGCGAAGAGCAGATCGAAGAAAG
** *
92987610 CAGATTTGGCGTCTCTGTATTGGC-GAAGAGCAGATCAAAGAT-AGCAG
130 CAGATTTGGCACCTCTATATTGGCAG-AGAGCAGATCAAAG-TCAGCAG
* *
92987657 ATTTGGCATCTCTGTATTGTCAGAAAGCAGTTTCGAAGATAGCAGATTTGGCGTCTCTGTATTGG
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAG-TTCGAAGATAGCAGATTTGGAGTCTCTGTATTGG
* * * * *
92987722 GGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTTTGTTGGCGAAGAGCAGATCGAAGAAAG
65 CGGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTAGCGAAGAGCAGATCGAAGAAAG
* * * *
92987787 CAGATTTGGCACCTCTATATTGTCAGAGGGCAGATCGAAGTCAGTAG
130 CAGATTTGGCACCTCTATATTGGCAGAGAGCAGATCAAAGTCAGCAG
* * * *
92987834 ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAAATAACAGATT
1 ATTTGGCATCTCTGTATTGTCAGAGAGCAGTTCGAAGATAGCAGATT
92987881 GGTGTTCCCG
Statistics
Matches: 198, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
176 15 0.08
177 182 0.92
178 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (176 bp):
ATTTGGCATCTCTGTATTGTCAGAGAGCAGTTCGAAGATAGCAGATTTGGAGTCTCTGTATTGGC
GGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTAGCGAAGAGCAGATCGAAGAAAGC
AGATTTGGCACCTCTATATTGGCAGAGAGCAGATCAAAGTCAGCAG
Found at i:92987709 original size:332 final size:332
Alignment explanation
Indices: 92987103--92987751 Score: 1039
Period size: 332 Copynumber: 2.0 Consensus size: 332
92987093 ATTCTACACA
* * * *
92987103 TCATGTCTTTAGAAGACAGTGTAGCGATATTGGCAAATCCTGCAGATTTTGCATCTCTGAATTGT
1 TCATGTCTTTAGAAGACAGTGTAGCGACATTGGAAAATCCTGCAAATTTGGCATCTCTGAATTGT
* * *
92987168 CAGAGAGTAGATTCGAAGATAGCAAATTTGGCGTCTCTATATTGGCAGAGAGTAGATCAAAGATA
66 CAGAGAGCAGATTCGAAGATAGCAAATTTGGAGTCTCTATATTGGCAGAGAGCAGATCAAAGATA
* *
92987233 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCATTTCTGTAT
131 GCAGATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTAT
* * * * *
92987298 TGGCGGAGAATAGATCGAAGACAGCAAATTTGGCGTCTCTGTATTGTCAGAGAGCAGATTCGAAG
196 TGGCGAAGAACAGATCAAAGACAGCAAATTTGGCATCTCTGTATTGTCAGAAAGCAGATTCGAAG
* *
92987363 ATAGCAGATTTGGCGTCTCTGTGTTGGTGGAGAGCAGATCGAAGAAAGCAGATTTGGTATCTCTG
261 ATAGCAGATTTGGCGTCTCTGTATTGGGGGAGAGCAGATCGAAGAAAGCAGATTTGGTATCTCTG
92987428 TATTGTC
326 TATTGTC
92987435 TCATGTCTTTAGAAGACAGTGTAGCGACATTGGAAAATCCTGCAAATTTGGCATCTCT-ATATTG
1 TCATGTCTTTAGAAGACAGTGTAGCGACATTGGAAAATCCTGCAAATTTGGCATCTCTGA-ATTG
* * * * *
92987499 TCAGAGAGCAGATTCGAAGATAGTAGATTTGGAGTCTCTGTATTGGCGGAGAGCAGATCGAAGAT
65 TCAGAGAGCAGATTCGAAGATAGCAAATTTGGAGTCTCTATATTGGCAGAGAGCAGATCAAAGAT
*
92987564 AGCAGATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTA
130 AGCAGATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTA
* * * *
92987629 TTGGCGAAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAAAGCAGTTTCGAA
195 TTGGCGAAGAACAGATCAAAGACAGCAAATTTGGCATCTCTGTATTGTCAGAAAGCAGATTCGAA
*
92987694 GATAGCAGATTTGGCGTCTCTGTATTGGGGGAGAGCAGATCGAAGATAGCAGATTTGG
260 GATAGCAGATTTGGCGTCTCTGTATTGGGGGAGAGCAGATCGAAGAAAGCAGATTTGG
92987752 CGTCTCTTTG
Statistics
Matches: 289, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
331 1 0.00
332 288 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (332 bp):
TCATGTCTTTAGAAGACAGTGTAGCGACATTGGAAAATCCTGCAAATTTGGCATCTCTGAATTGT
CAGAGAGCAGATTCGAAGATAGCAAATTTGGAGTCTCTATATTGGCAGAGAGCAGATCAAAGATA
GCAGATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTAT
TGGCGAAGAACAGATCAAAGACAGCAAATTTGGCATCTCTGTATTGTCAGAAAGCAGATTCGAAG
ATAGCAGATTTGGCGTCTCTGTATTGGGGGAGAGCAGATCGAAGAAAGCAGATTTGGTATCTCTG
TATTGTC
Found at i:92995088 original size:40 final size:40
Alignment explanation
Indices: 92995056--92995435 Score: 426
Period size: 40 Copynumber: 9.5 Consensus size: 40
92995046 ACAATTTCCC
92995056 TCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCT
1 TCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCT
*
92995096 TCGGGTCTTAGCCCAGATATATCAACTCGCACAAATGCCT
1 TCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCT
* * *
92995136 TCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAATTGCCT
1 TCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCT
* * *
92995176 TCGGGTCTTATCCCGGGTATAGCAACTCGCACAAATGCCT
1 TCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCT
* * * *
92995216 TCGGGTCTTGGCCCGGATAAAATC-ACTAGCACAATTGCCT
1 TCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCT
* * *
92995256 TCGGGTCTTATCCCGGGTATAGCAACTCGCACAAATGCCT
1 TCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCT
* * * * *
92995296 TCGGGCCTTGGCCCGGATAAAATC-ACTAGCACAATTGCCT
1 TCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCT
* * * *
92995336 TCGGGTCTTATCCTGGGTATAGCAACTCGCACAAATGCCT
1 TCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCT
* * * * *
92995376 TTGGGTCTTGGCCCGGATAAAATC-ACTAGCACAATTGCCT
1 TCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCT
* *
92995416 TCGGGACTTAGCCTGGATAT
1 TCGGGTCTTAGCCCGGATAT
92995436 CATTCAAATG
Statistics
Matches: 277, Mismatches: 56, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
39 10 0.04
40 254 0.92
41 13 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
TCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCT
Found at i:92995431 original size:80 final size:80
Alignment explanation
Indices: 92995056--92995425 Score: 607
Period size: 80 Copynumber: 4.6 Consensus size: 80
92995046 ACAATTTCCC
* * * * * * * *
92995056 TCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATATCA
1 TCGGGTCTTGGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCA
92995120 ACTCGCACAAATGCCT
65 ACTCGCACAAATGCCT
*
92995136 TCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAA
1 TCGGGTCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAA
92995201 CTCGCACAAATGCCT
66 CTCGCACAAATGCCT
92995216 TCGGGTCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAA
1 TCGGGTCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAA
92995281 CTCGCACAAATGCCT
66 CTCGCACAAATGCCT
* *
92995296 TCGGGCCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCTGGGTATAGCAA
1 TCGGGTCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAA
92995361 CTCGCACAAATGCCT
66 CTCGCACAAATGCCT
* *
92995376 TTGGGTCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTA
1 TCGGGTCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTA
92995426 GCCTGGATAT
Statistics
Matches: 276, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
80 272 0.99
81 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TCGGGTCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAA
CTCGCACAAATGCCT
Found at i:92996497 original size:26 final size:24
Alignment explanation
Indices: 92996462--92996509 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
92996452 AGAAAGAAGA
92996462 AAAAAAATATATGTGCTAAGAGCT
1 AAAAAAATATATGTGCTAAGAGCT
92996486 AAAAAAATATATGTGCTAAGAGCT
1 AAAAAAATATATGTGCTAAGAGCT
92996510 TTCAACTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.17, T:0.25
Consensus pattern (24 bp):
AAAAAAATATATGTGCTAAGAGCT
Found at i:93001930 original size:32 final size:33
Alignment explanation
Indices: 93001893--93001963 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 33
93001883 TAAAATAATT
*
93001893 AATATATA-ATAT-ATAACA-TATAAAA-AACAA
1 AATATATATATATAATAA-AGTATAAAATAAAAA
93001923 AATATATATATATAATAAAGTATAAAATAAAAA
1 AATATATATATATAATAAAGTATAAAATAAAAA
93001956 AATATATA
1 AATATATA
93001964 AGAAAGATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
30 8 0.22
31 5 0.14
32 11 0.31
33 12 0.33
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (33 bp):
AATATATATATATAATAAAGTATAAAATAAAAA
Found at i:93001974 original size:33 final size:32
Alignment explanation
Indices: 93001911--93001974 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 32
93001901 ATATATAACA
* * *
93001911 TATAAAAAACAAAATATATATATATAATAAAG
1 TATAAAAAAAAAAATATATATAGAAAATAAAG
93001943 TATAAAATAAAAAAATATATA-AGAAAGATAAA
1 TATAAAA-AAAAAAATATATATAGAAA-ATAAA
93001975 TATTATAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 10 0.37
33 17 0.63
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.25
Consensus pattern (32 bp):
TATAAAAAAAAAAATATATATAGAAAATAAAG
Found at i:93002129 original size:20 final size:18
Alignment explanation
Indices: 93002089--93002136 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
93002079 AATATTTTAT
93002089 ATATAAT-AAAATAAATA
1 ATATAATAAAAATAAATA
*
93002106 ATATAATAAAAATATATATC
1 ATATAATAAAAATA-A-ATA
93002126 ATATAATAAAA
1 ATATAATAAAA
93002137 TTTTTAAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 7 0.26
18 6 0.22
19 1 0.04
20 13 0.48
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (18 bp):
ATATAATAAAAATAAATA
Found at i:93002255 original size:13 final size:13
Alignment explanation
Indices: 93002211--93002260 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
93002201 GAGTAATTTT
93002211 TATATAAT-AAAA
1 TATATAATAAAAA
* * *
93002223 TAAATAATATACA
1 TATATAATAAAAA
*
93002236 TACATAATAAAAA
1 TATATAATAAAAA
93002249 TATATAATAAAA
1 TATATAATAAAA
93002261 GAGAAGATGC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 7 0.23
13 23 0.77
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (13 bp):
TATATAATAAAAA
Found at i:93002424 original size:14 final size:13
Alignment explanation
Indices: 93002394--93002439 Score: 60
Period size: 12 Copynumber: 3.6 Consensus size: 13
93002384 ATTATTTATA
93002394 AAAATATATAAA-
1 AAAATATATAAAT
*
93002406 GAAATATATACAAT
1 AAAATATATA-AAT
93002420 AAAATATAT-AAT
1 AAAATATATAAAT
93002432 AAAATATA
1 AAAATATA
93002440 ATTTATAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 20 0.67
13 2 0.07
14 8 0.27
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:93010703 original size:27 final size:27
Alignment explanation
Indices: 93010672--93010849 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
93010662 TAAATTGTAG
93010672 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
93010699 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
93010725 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
93010753 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
93010781 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
93010808 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
93010835 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
93010850 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:93010786 original size:82 final size:81
Alignment explanation
Indices: 93010673--93010828 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
93010663 AAATTGTAGA
* *
93010673 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
93010737 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
93010754 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
93010819 TGCGAGTTGA
65 TGCGAATTGA
93010829 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:93010840 original size:82 final size:81
Alignment explanation
Indices: 93010672--93010849 Score: 223
Period size: 82 Copynumber: 2.2 Consensus size: 81
93010662 TAAATTGTAG
* *
93010672 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
93010737 TGCGAATTGACCATGC
66 TGCGAATTGACCATAC
* ** *
93010753 GGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAG
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAG
* ** *
93010817 TGTGCGAGTTGATTATAT
64 TGTGCGAATTGACCATAC
*
93010835 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
93010850 GACTCAATAT
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 16 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATTGACCATAC
Found at i:93018222 original size:18 final size:18
Alignment explanation
Indices: 93018181--93018216 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
93018171 CATTCCGAAG
* *
93018181 TATATATATATATACATA
1 TATATGTATATATACACA
93018199 TATATGTATATATACACA
1 TATATGTATATATACACA
93018217 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:93018733 original size:27 final size:27
Alignment explanation
Indices: 93018700--93018875 Score: 192
Period size: 27 Copynumber: 6.5 Consensus size: 27
93018690 AATTGTACAT
*
93018700 CACTAAGTGTGCGATTTGACTATGTTG
1 CACTAAGTGTGCGATTTGACTATGTAG
** *
93018727 CACTAAGTGTGCGAAATGAATATG-ATG
1 CACTAAGTGTGCGATTTGACTATGTA-G
* * **
93018754 CACTAAGTGTGCGAATTGACCATGCGG
1 CACTAAGTGTGCGATTTGACTATGTAG
93018781 CACTAAGTGTGCGAGTTTGACTATGTAG
1 CACTAAGTGTGCGA-TTTGACTATGTAG
* *
93018809 CACTAAGTGTGCGATTTGATTACGTAG
1 CACTAAGTGTGCGATTTGACTATGTAG
* * * *
93018836 CACTAAGTGTGTGAGTTGATTATATAG
1 CACTAAGTGTGCGATTTGACTATGTAG
*
93018863 CACTGAGTGTGCG
1 CACTAAGTGTGCG
93018876 GACTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
CACTAAGTGTGCGATTTGACTATGTAG
Found at i:93018866 original size:82 final size:81
Alignment explanation
Indices: 93018695--93018875 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
93018685 GGATTAATTG
* * *
93018695 TACATCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
93018760 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
93018776 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
93018840 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
93018858 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
93018876 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:93020834 original size:30 final size:30
Alignment explanation
Indices: 93020793--93020857 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
93020783 TCTTTTAATT
* ** *
93020793 AAATAATCACTACCGATTCAAACATTGTAG
1 AAATAACCACTACCGAAGCAAACATTCTAG
*
93020823 AAATAACCACTATCGAAGCAAACATTCTAG
1 AAATAACCACTACCGAAGCAAACATTCTAG
93020853 AAATA
1 AAATA
93020858 GCAACATTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.23
Consensus pattern (30 bp):
AAATAACCACTACCGAAGCAAACATTCTAG
Found at i:93024038 original size:205 final size:205
Alignment explanation
Indices: 93023124--93024035 Score: 1465
Period size: 205 Copynumber: 4.5 Consensus size: 205
93023114 AAATCTATTT
* * * *
93023124 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCGGTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* * *
93023189 GCGAAAACCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
93023254 GGATCTGCTTCAG--T---CATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTACTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
93023314 AGATGCCAGA
196 AGATGCCAGA
* * * *
93023324 CTTCGATTTGTTCTCTGATAATGCAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
93023389 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
93023454 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGCAATGG
131 GGATCTACTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
93023519 AGATGCCAGA
196 AGATGCCAGA
*
93023529 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
*
93023594 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
93023659 GGATCTACTTTAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTACTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
* *
93023724 AGGTCCCAGA
196 AGATGCCAGA
* *
93023734 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAATCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* * * * *
93023799 GTGAAAGGCAAATCAGCAATGTCTGCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * * * * *
93023864 AGATCTACTTCAGTATAAACATTTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
131 GGATCTACTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
93023929 AGATGCCAGA
196 AGATGCCAGA
*
93023939 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
*
93024004 GTGAAAGTCAAATCAGCTATGTCTTCGATTTG
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTG
93024036 CTCTCCGCCA
Statistics
Matches: 659, Mismatches: 48, Indels: 5
0.93 0.07 0.01
Matches are distributed among these distances:
200 134 0.20
202 1 0.00
205 524 0.80
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAAACATCTAAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:93024063 original size:46 final size:45
Alignment explanation
Indices: 93024010--93024117 Score: 139
Period size: 44 Copynumber: 2.4 Consensus size: 45
93024000 ACACGTGAAA
* * *
93024010 GTCAAATCAGCTATGTCTTCGATTTGCTCTCCGCCAATACAGAGAT
1 GTCAAATCTGCTAT-TCTTCGATCTGCTCTCCGACAATACAGAGAT
* *
93024056 GTCAAATCTGGTA-TCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GTCAAATCTGCTATTCTTCGATCTGCTCTCCGACAATACAGAGAT
*
93024100 GCCAAATCTGCTA-TCTTC
1 GTCAAATCTGCTATTCTTC
93024118 AACTTGTTCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 44 0.80
46 11 0.20
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (45 bp):
GTCAAATCTGCTATTCTTCGATCTGCTCTCCGACAATACAGAGAT
Found at i:93024076 original size:44 final size:44
Alignment explanation
Indices: 93024025--93024117 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 44
93024015 ATCAGCTATG
* * * *
93024025 TCTTCGATTTGCTCTCCGCCAATACAGAGATGTCAAATCTGGTA
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTA
*
93024069 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTA
93024113 TCTTC
1 TCTTC
93024118 AACTTGTTCC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTA
Found at i:93024145 original size:44 final size:44
Alignment explanation
Indices: 93024048--93024254 Score: 143
Period size: 44 Copynumber: 4.7 Consensus size: 44
93024038 CTCCGCCAAT
* * * * * * *
93024048 ACAGAGATGTCAAATCTGGTATCTTCGATCTGCTCTCTGACAA-T
1 ACAGGGATGCCAAATCTGATATCTTCGATCTGTTCCCT-ATAAGC
* * *
93024092 ACAGAGATGCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAGC
1 ACAGGGATGCCAAATCTGATATCTTCGATC-TGTTCCCTATAAGC
* * *
93024136 ACAGGGATGCC--ATGCTGAAATCTTCGATCTGTTTCGCTGTAAGC
1 ACAGGGATGCCAAAT-CTGATATCTTCGATCTG-TTCCCTATAAGC
* * * * * **
93024180 ACAGGAATGTCAGATCTGTTATCTTCGATCTGTTTCCTATAAAT
1 ACAGGGATGCCAAATCTGATATCTTCGATCTGTTCCCTATAAGC
* * *
93024224 ACAGGGATGCCAAATCTTATTTCTTTGATCT
1 ACAGGGATGCCAAATCTGATATCTTCGATCT
93024255 ACAGTGTCCC
Statistics
Matches: 127, Mismatches: 29, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
42 2 0.02
43 16 0.13
44 92 0.72
45 15 0.12
46 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (44 bp):
ACAGGGATGCCAAATCTGATATCTTCGATCTGTTCCCTATAAGC
Found at i:93032053 original size:17 final size:19
Alignment explanation
Indices: 93032000--93032043 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
93031990 CATATCATAT
*
93032000 CATATCATATCTAAGATTG
1 CATATCACATCTAAGATTG
93032019 CATATCACATCTAAGATTG
1 CATATCACATCTAAGATTG
93032038 CATATC
1 CATATC
93032044 CTTAAAGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (19 bp):
CATATCACATCTAAGATTG
Found at i:93035352 original size:28 final size:28
Alignment explanation
Indices: 93035286--93035494 Score: 323
Period size: 28 Copynumber: 7.5 Consensus size: 28
93035276 ATATTAAGTC
* * *
93035286 CGCACACTCAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
93035313 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
93035341 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
93035369 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
93035397 CGCACATTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
93035425 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
93035453 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
93035480 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93035495 GCACAATTTA
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
27 38 0.23
28 130 0.77
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:93035513 original size:84 final size:82
Alignment explanation
Indices: 93035286--93035519 Score: 299
Period size: 84 Copynumber: 2.8 Consensus size: 82
93035276 ATATTAAGTC
* * * * *
93035286 CGCACACTCAGTGCTATATAATCAGCTCGCACACCTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT-CACAATCAAACTCGCACACTTA
*
93035351 GTGCTACATAGTCAAACT
65 GTGCTACATAATCAAACT
*
93035369 CGCACACTTAGTGCTACATAATCAAACTCGCACATTTAGTGCT-ACATAGTCAAACTCGCACACT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTCACA-A-TCAAACTCGCACACT
93035433 TAGTGCTACATAATCAAACT
63 TAGTGCTACATAATCAAACT
* * * * *
93035453 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACCCGCACTCTT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT-CACAA-TCAAACTCGCACACTT
93035518 AG
64 AG
93035520 CGCCAATCTC
Statistics
Matches: 132, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
82 2 0.02
83 39 0.30
84 88 0.67
85 3 0.02
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTCACAATCAAACTCGCACACTTAG
TGCTACATAATCAAACT
Found at i:93043575 original size:28 final size:28
Alignment explanation
Indices: 93043509--93043661 Score: 202
Period size: 28 Copynumber: 5.5 Consensus size: 28
93043499 ATATTAAGTC
* * *
93043509 CGCACACTCAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
93043536 CGCGCACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
93043564 CGCACATTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
93043592 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
93043620 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
93043647 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93043662 GCACAATTTA
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
27 37 0.34
28 73 0.66
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:93043680 original size:56 final size:55
Alignment explanation
Indices: 93043508--93043686 Score: 198
Period size: 56 Copynumber: 3.2 Consensus size: 55
93043498 CATATTAAGT
* * * ** * *
93043508 CCGCACACTCAGTGCTATATAATCAGCTCGCGCACCTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAATCAAAC
* *
93043563 TCGCACATTTAGTGCTACATAGTCAAACTT-GCACACTTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAGTC-AA-TTCGCACACTTAGTGCTACATAATCAAAC
* * * *
93043619 TCGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAAC
1 CCGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAA-TCAAAC
*
93043675 CCGCACTCTTAG
1 CCGCACACTTAG
93043687 CGCCAATCTC
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
54 2 0.02
55 39 0.37
56 63 0.60
57 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CCGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAATCAAAC
Found at i:93065119 original size:53 final size:53
Alignment explanation
Indices: 93065039--93065151 Score: 190
Period size: 53 Copynumber: 2.1 Consensus size: 53
93065029 GCAGTATACA
93065039 GGTGTGTGATCGACGAACCAGGCAGTGCGCGCGTGACACAGGTGTATGACACG
1 GGTGTGTGATCGACGAACCAGGCAGTGCGCGCGTGACACAGGTGTATGACACG
* * *
93065092 GGTGTGTGATCTACGAATCAGGCAGTGCGCGCTTGACACAGGTGTATGACACG
1 GGTGTGTGATCGACGAACCAGGCAGTGCGCGCGTGACACAGGTGTATGACACG
*
93065145 GGCGTGT
1 GGTGTGT
93065152 AAGGATTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.20
Consensus pattern (53 bp):
GGTGTGTGATCGACGAACCAGGCAGTGCGCGCGTGACACAGGTGTATGACACG
Found at i:93074989 original size:36 final size:36
Alignment explanation
Indices: 93074921--93074998 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 36
93074911 TAAAAACTGA
* * * *
93074921 ATATCTCATTCAAGATCTTGGGATTGAGAAGAC-TAG
1 ATATCTCATTCAAGAGCTTAGGACTGAAAAGACAT-G
*
93074957 ATATCTCATTCAGGAGCTTAGGACTGAAAAGACATG
1 ATATCTCATTCAAGAGCTTAGGACTGAAAAGACATG
93074993 ATATCT
1 ATATCT
93074999 TGTTTAGGAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 35 0.97
37 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (36 bp):
ATATCTCATTCAAGAGCTTAGGACTGAAAAGACATG
Found at i:93077488 original size:19 final size:19
Alignment explanation
Indices: 93077441--93077520 Score: 119
Period size: 19 Copynumber: 4.3 Consensus size: 19
93077431 CATATCATAT
*
93077441 CATATCATATCTAAAATTG
1 CATATCATATCTAAGATTG
93077460 --TATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
* *
93077477 CATATCACATCTAAGAGTG
1 CATATCATATCTAAGATTG
93077496 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
93077515 CATATC
1 CATATC
93077521 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
17 16 0.30
19 38 0.70
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:93078264 original size:93 final size:93
Alignment explanation
Indices: 93078095--93078270 Score: 221
Period size: 93 Copynumber: 1.9 Consensus size: 93
93078085 TATGTATCTG
* * * ** * *
93078095 CTCTCCGTCAAAATGGAGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATTCGA
1 CTCTCCGTCAAAATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTCAGTGTCAGAACATGCGA
*
93078160 AAGTCAAATCTGCTATGCCTTCGATTTA
66 AAGCCAAATCTGCTATGCCTTCGATTTA
*
93078188 CTCTCCGTCGAAGATAGAGAAGCCAAATCTTGTTATCTTGGATCTGCTTCAGTG-CA-AACATGC
1 CTCTCCGTC-AAAATAGAGAAGCCAAATC-TGTTATCTTGGATCTGCTTCAGTGTCAGAACATGC
* *
93078251 GAAGGCCAGATCTGCTATGC
64 GAAAGCCAAATCTGCTATGC
93078271 TTTGGTCTAT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
93 32 0.46
94 16 0.23
95 22 0.31
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (93 bp):
CTCTCCGTCAAAATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTCAGTGTCAGAACATGCGA
AAGCCAAATCTGCTATGCCTTCGATTTA
Found at i:93078378 original size:41 final size:41
Alignment explanation
Indices: 93078328--93078424 Score: 158
Period size: 43 Copynumber: 2.3 Consensus size: 41
93078318 ATCTACTCCG
93078328 CTACTGCTTAGGGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGATAAGATCTGCAAATTTAACCTGTTACC
* *
93078369 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACTTGTTTCC
1 CTACTGCTTA-GG-GATAAGATCTGCAAATTTAACCTGTTACC
93078412 CTACTGCTTAGGG
1 CTACTGCTTAGGG
93078425 GATTAAGGCA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
41 11 0.21
42 4 0.08
43 37 0.71
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (41 bp):
CTACTGCTTAGGGATAAGATCTGCAAATTTAACCTGTTACC
Found at i:93078572 original size:84 final size:84
Alignment explanation
Indices: 93078369--93078649 Score: 404
Period size: 84 Copynumber: 3.3 Consensus size: 84
93078359 ACCTGTTACC
* *
93078369 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACTTGTTTCCCTACTGCTTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
* *
93078434 AAGTCATCATCGATCTGCTCCG
66 AGGTC-T--TCGATCTGCTCCA
* * * *
93078456 CTACTACTTAGGGAGATAAGATCTGCGAATTTAACCTGTCACCCTACTGCCTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
*
93078521 AGGTCTTCGATCTACTCCA
66 AGGTCTTCGATCTGCTCCA
* *
93078540 CTATTGCTTAGGGAGATAAGATCTGTAAATTTAACGC-GTTACCCTACTGCTTAGGGGATTAAGG
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAAC-CTGTTACCCTACTGCTTAGGGGATTAAGG
93078604 C-GGATCTTCGATCTGCTCCA
65 CAGG-TCTTCGATCTGCTCCA
93078624 CTACTGCTTAGGGAGATAAGATCTGC
1 CTACTGCTTAGGGAGATAAGATCTGC
93078650 GAACCTGTTA
Statistics
Matches: 174, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
83 2 0.01
84 107 0.61
85 1 0.01
86 1 0.01
87 63 0.36
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
AGGTCTTCGATCTGCTCCA
Found at i:93078723 original size:221 final size:221
Alignment explanation
Indices: 93078280--93078962 Score: 909
Period size: 221 Copynumber: 3.1 Consensus size: 221
93078270 CTTTGGTCTA
* * * *
93078280 TTACCCTACTGCTTAAGGG-TTAAGGTGCATTGTCTTCGATCTACTCCGCTACTGCTTA-GG-GA
1 TTACCCTACTGCTTAGGGGATTAA-G-GCA-GGTCTTCGATCTACTCCACTATTGCTTAGGGAGA
* * *
93078342 TAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AA-
63 TAAGATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGG-GATTAAG----GCGAGTCTTCAAT
* * * * *
93078403 CTTGTTTCC-CTACTGCTT-AGGGGATTAAG----GC-AA---GTCA-TCATCGATCTGCTCCGC
123 C-TG-CTCCACTACTGCTTAAGGAGA-TAAGATCTGCGAACCTGTTACTCTTCGATCTGCTCCAC
* *
93078457 TACTACTTAGGGAGATAAGATCTGCGAATTTAACCTG
185 TACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTG
* *
93078494 TCACCCTACTGCCTAGGGGATTAAGGCAGGTCTTCGATCTACTCCACTATTGCTTAGGGAGATAA
1 TTACCCTACTGCTTAGGGGATTAAGGCAGGTCTTCGATCTACTCCACTATTGCTTAGGGAGATAA
* * *
93078559 GATCTGTAAATTTAACGCGTTACCCTACTGCTTAGGGGATTAAGGCG-GATCTTCGATCTGCTCC
66 GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAG-TCTTCAATCTGCTCC
* *
93078623 ACTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACTCTTCGATCTGCTCCACTACTGCTTAA
130 ACTACTGCTTAAGGAGATAAGATCTGCGAACCTGTTACTCTTCGATCTGCTCCACTACTGCTTAG
*
93078688 GGAGATAAGATCTGTAAATTTAACCTG
195 GGAGATAAGATCTGCAAATTTAACCTG
* *
93078715 TTACCCTACTGCTTAGGGGATTAAGGCTGGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAA
1 TTACCCTACTGCTTAGGGGATTAAGGCAGGTCTTCGATCTACTCCACTATTGCTTAGGGAGATAA
93078780 GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCA
66 GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCA
93078845 CTACTGCTTAAGGAGATAAGATCTGCGAACCTGTTACTCTTCGATCTGCTCCACTACTGCTTAGG
131 CTACTGCTTAAGGAGATAAGATCTGCGAACCTGTTACTCTTCGATCTGCTCCACTACTGCTTAGG
93078910 GAGATAAGATCTGCAAATTTAACCTG
196 GAGATAAGATCTGCAAATTTAACCTG
93078936 TTACCCTACTGCTTAGGGGATTAAGGC
1 TTACCCTACTGCTTAGGGGATTAAGGC
93078963 GCTAAATTTT
Statistics
Matches: 417, Mismatches: 32, Indels: 33
0.87 0.07 0.07
Matches are distributed among these distances:
210 3 0.01
211 5 0.01
212 41 0.10
213 12 0.03
214 60 0.14
215 4 0.01
216 2 0.00
217 2 0.00
220 3 0.01
221 284 0.68
222 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (221 bp):
TTACCCTACTGCTTAGGGGATTAAGGCAGGTCTTCGATCTACTCCACTATTGCTTAGGGAGATAA
GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCA
CTACTGCTTAAGGAGATAAGATCTGCGAACCTGTTACTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAAATTTAACCTG
Found at i:93078763 original size:84 final size:84
Alignment explanation
Indices: 93078661--93078870 Score: 359
Period size: 84 Copynumber: 2.5 Consensus size: 84
93078651 AACCTGTTAC
* *
93078661 TCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAAATTTAACCTGTTACCCTACTG
1 TCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCCGTTACCCTACTG
93078726 CTTAGGGGATTAAGGCTG-G
66 CTTAGGGGATTAAGGC-GAG
* *
93078745 TCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGCAAATTTAACCCGTTACCCTACTG
1 TCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCCGTTACCCTACTG
93078810 CTTAGGGGATTAAGGCGAG
66 CTTAGGGGATTAAGGCGAG
*
93078829 TCTTCAATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGC
1 TCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGC
93078871 GAACCTGTTA
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
83 1 0.01
84 117 0.99
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (84 bp):
TCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAAATTTAACCCGTTACCCTACTG
CTTAGGGGATTAAGGCGAG
Found at i:93078770 original size:137 final size:137
Alignment explanation
Indices: 93078524--93078786 Score: 458
Period size: 137 Copynumber: 1.9 Consensus size: 137
93078514 TTAAGGCAGG
* *
93078524 TCTTCGATCTACTCCACTATTGCTTAGGGAGATAAGATCTGTAAATTTAACGCGTTACCCTACTG
1 TCTTCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGTAAATTTAACGCGTTACCCTACTG
93078589 CTTAGGGGATTAAGGCGGATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCGAAC
66 CTTAGGGGATTAAGGCGGATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCGAAC
93078654 CTGTTAC
131 CTGTTAC
*
93078661 TCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAAATTTAAC-CTGTTACCCTACT
1 TCTTCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGTAAATTTAACGC-GTTACCCTACT
*
93078725 GCTTAGGGGATTAAGGCTGG-TCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGC
65 GCTTAGGGGATTAAGGC-GGATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
93078787 AAATTTAACC
Statistics
Matches: 120, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
136 1 0.01
137 117 0.98
138 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (137 bp):
TCTTCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGTAAATTTAACGCGTTACCCTACTG
CTTAGGGGATTAAGGCGGATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCGAAC
CTGTTAC
Found at i:93079922 original size:7 final size:7
Alignment explanation
Indices: 93079910--93079946 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
93079900 GGCCTCTCCA
93079910 TTTTTAT
1 TTTTTAT
93079917 TTTTTAT
1 TTTTTAT
93079924 TTTTTAT
1 TTTTTAT
93079931 TTTTTA-
1 TTTTTAT
93079937 TTTTTAT
1 TTTTTAT
93079944 TTT
1 TTT
93079947 CTTTTTTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTAT
Found at i:93086531 original size:19 final size:19
Alignment explanation
Indices: 93086484--93086563 Score: 110
Period size: 19 Copynumber: 4.3 Consensus size: 19
93086474 CATATTATAT
*
93086484 CATATCATATCTAAAATTG
1 CATATCATATCTAAGATTG
93086503 --TATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
* * *
93086520 CATATCACATCTAAGAGTA
1 CATATCATATCTAAGATTG
93086539 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
93086558 CATATC
1 CATATC
93086564 CTTAAAGATT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
17 16 0.31
19 36 0.69
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:93086908 original size:20 final size:18
Alignment explanation
Indices: 93086872--93086946 Score: 75
Period size: 20 Copynumber: 4.2 Consensus size: 18
93086862 CCAGTTTTTA
93086872 AATAAAAA-CATAAAAAT
1 AATAAAAACCATAAAAAT
93086889 AATAAAAACCTATGAAAAAT
1 AATAAAAACC-AT-AAAAAT
*
93086909 AATAAAAACTCATTAAAAT
1 AATAAAAAC-CATAAAAAT
* *
93086928 --TTAAAACAATAAAAAT
1 AATAAAAACCATAAAAAT
93086944 AAT
1 AAT
93086947 TTTAAATATT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
16 7 0.15
17 14 0.29
18 2 0.04
19 7 0.15
20 17 0.35
21 1 0.02
ACGTcount: A:0.68, C:0.08, G:0.01, T:0.23
Consensus pattern (18 bp):
AATAAAAACCATAAAAAT
Found at i:93087842 original size:19 final size:18
Alignment explanation
Indices: 93087820--93087892 Score: 69
Period size: 19 Copynumber: 3.9 Consensus size: 18
93087810 TTTGCAAATT
93087820 TTTTTATATTTTTAAAACA
1 TTTTTAT-TTTTTAAAACA
93087839 TTTTTATTTATTCT-AAACAA
1 TTTTTATTT-TT-TAAAAC-A
* *
93087859 TTTTTATTATTTCAAA-A
1 TTTTTATTTTTTAAAACA
93087876 TTCTTTATTTTTTAAAA
1 TT-TTTATTTTTTAAAA
93087893 AAATTTAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
17 3 0.07
18 15 0.33
19 18 0.39
20 10 0.22
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTTATTTTTTAAAACA
Found at i:93089493 original size:19 final size:20
Alignment explanation
Indices: 93089469--93089513 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
93089459 ATTAAGGTTT
*
93089469 AATTAATCATGATTAAGT-A
1 AATTAATCAAGATTAAGTAA
* *
93089488 AATTAATTAAGATTAATTAA
1 AATTAATCAAGATTAAGTAA
93089508 AATTAA
1 AATTAA
93089514 ACTAAGTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (20 bp):
AATTAATCAAGATTAAGTAA
Found at i:93089502 original size:10 final size:10
Alignment explanation
Indices: 93089438--93089513 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 10
93089428 CTTAAATGTC
93089438 ATTAACTTAAG
1 ATTAA-TTAAG
93089449 -TTAATTAAGG
1 ATTAATTAA-G
*
93089459 ATTAAGGTTTA-
1 ATTAA--TTAAG
* *
93089470 ATTAATCATG
1 ATTAATTAAG
*
93089480 ATTAAGTAA-
1 ATTAATTAAG
93089489 ATTAATTAAG
1 ATTAATTAAG
*
93089499 ATTAATTAAA
1 ATTAATTAAG
93089509 ATTAA
1 ATTAA
93089514 ACTAAGTATC
Statistics
Matches: 50, Mismatches: 9, Indels: 13
0.69 0.12 0.18
Matches are distributed among these distances:
9 13 0.26
10 25 0.50
11 9 0.18
13 3 0.06
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.39
Consensus pattern (10 bp):
ATTAATTAAG
Found at i:93090683 original size:88 final size:88
Alignment explanation
Indices: 93090526--93090709 Score: 352
Period size: 88 Copynumber: 2.1 Consensus size: 88
93090516 CAGGATGTAT
93090526 TTCGTGTG-CCAGATATGAGCTTTGTGTACTAGGATGTGCTTCGTGCGCCAGTATTCACATACGT
1 TTCG-GTGACCAGATATGAGCTTTGTGTACTAGGATGTGCTTCGTGCGCCAGTATTCACATACGT
93090590 GCTAGTTTACACTATTTCGATTTA
65 GCTAGTTTACACTATTTCGATTTA
93090614 TTCGGTGACCAGATATGAGCTTTGTGTACTAGGATGTGCTTCGTGCGCCAGTATTCACATACGTG
1 TTCGGTGACCAGATATGAGCTTTGTGTACTAGGATGTGCTTCGTGCGCCAGTATTCACATACGTG
93090679 CTAGTTTACACTATTTCGATTTA
66 CTAGTTTACACTATTTCGATTTA
93090702 TTCGGTGA
1 TTCGGTGA
93090710 TGCACTTTGG
Statistics
Matches: 95, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
87 3 0.03
88 92 0.97
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (88 bp):
TTCGGTGACCAGATATGAGCTTTGTGTACTAGGATGTGCTTCGTGCGCCAGTATTCACATACGTG
CTAGTTTACACTATTTCGATTTA
Found at i:93111251 original size:18 final size:19
Alignment explanation
Indices: 93111228--93111265 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
93111218 GGAAGCAAGC
*
93111228 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
93111246 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
93111265 A
1 A
93111266 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:93121070 original size:19 final size:19
Alignment explanation
Indices: 93121046--93121099 Score: 85
Period size: 17 Copynumber: 2.9 Consensus size: 19
93121036 ATAATCTTCA
93121046 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
93121065 ATGATA--CAATCTTAGTT
1 ATGATATGCAATCTTAGAT
93121082 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
93121100 AGATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.52
19 15 0.48
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:93121104 original size:17 final size:17
Alignment explanation
Indices: 93121048--93121105 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 17
93121038 AATCTTCAAT
93121048 GATATGCAATCTTAGATA
1 GATATGCAATCTTAGA-A
*
93121066 TGATA--CAATCTTAGTTAT
1 -GATATGCAATCTTAG--AA
93121084 GATATGCAATCTTAGAA
1 GATATGCAATCTTAGAA
93121101 GATAT
1 GATAT
93121106 AATTTTGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
17 19 0.58
19 14 0.42
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (17 bp):
GATATGCAATCTTAGAA
Found at i:93121413 original size:17 final size:17
Alignment explanation
Indices: 93121389--93121423 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93121379 TGTTTCCTGG
*
93121389 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
93121407 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
93121424 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:93126628 original size:23 final size:22
Alignment explanation
Indices: 93126585--93126642 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
93126575 AAAAGGTATC
* *
93126585 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
93126606 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
93126629 TGCATATCATATCT
1 TACAAATCATATCT
93126643 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:93126645 original size:19 final size:19
Alignment explanation
Indices: 93126621--93126657 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
93126611 AATCATATCT
93126621 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
93126640 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
93126658 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93126665 original size:17 final size:19
Alignment explanation
Indices: 93126624--93126665 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
93126614 CATATCTTCT
*
93126624 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
93126643 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
93126660 AAGATT
1 AAGATT
93126666 ATATTTCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:93126813 original size:21 final size:19
Alignment explanation
Indices: 93126776--93126814 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
93126766 TTGGACTTCG
*
93126776 TTTTTTTTTTGGTTTATTA
1 TTTTTTTTTTGGCTTATTA
93126795 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGG-CTTATT
93126815 TCTAGGCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 7 0.41
21 5 0.29
ACGTcount: A:0.10, C:0.03, G:0.13, T:0.74
Consensus pattern (19 bp):
TTTTTTTTTTGGCTTATTA
Found at i:93126937 original size:17 final size:17
Alignment explanation
Indices: 93126915--93126948 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
93126905 TGTTTCCCAG
93126915 ATTTTTT-ATATATTTTA
1 ATTTTTTAATA-ATTTTA
93126932 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
93126949 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:93127628 original size:21 final size:20
Alignment explanation
Indices: 93127604--93127662 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
93127594 TTATTCAATC
93127604 TATTTTAATTAAAATAAAATA
1 TATTTT-ATTAAAATAAAATA
* *
93127625 TATTATTATTAACAT-TAATA
1 TATT-TTATTAAAATAAAATA
*
93127645 T-CTTTATTAAAATAAAAT
1 TATTTTATTAAAATAAAAT
93127663 TCTTTAATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 9 0.29
19 4 0.13
20 5 0.16
21 11 0.35
22 2 0.06
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
TATTTTATTAAAATAAAATA
Found at i:93130084 original size:66 final size:66
Alignment explanation
Indices: 93129978--93130148 Score: 168
Period size: 66 Copynumber: 2.6 Consensus size: 66
93129968 GTTCAGGAAC
* * * * *
93129978 TTGAGAAGACCTA-ATATCTAGTTTAAGAGTTTGGAAAGACTCA-ATATATCATTCAAGATCTTG
1 TTGAGAAGA-CTAGATATCTAGTTTAGGAGCTTGAAAAGACT-AGATATAGCATTCAAGAGCTTG
93130041 GGA
64 GGA
* * * * * * *
93130044 TTGAGAAGTCTAGATATCTCGTTTAGGAGCTTGTAAAGACTAGATATCGCGTTTAGGAGCTTGGG
1 TTGAGAAGACTAGATATCTAGTTTAGGAGCTTGAAAAGACTAGATATAGCATTCAAGAGCTTGGG
93130109 A
66 A
* *
93130110 TTGAGAAGAC-ATGATATCTTGTTCAGGAGCTTGAAAAGA
1 TTGAGAAGACTA-GATATCTAGTTTAGGAGCTTGAAAAGA
93130149 TCCGATCTTT
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
65 5 0.06
66 82 0.94
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.31
Consensus pattern (66 bp):
TTGAGAAGACTAGATATCTAGTTTAGGAGCTTGAAAAGACTAGATATAGCATTCAAGAGCTTGGG
A
Found at i:93130126 original size:36 final size:36
Alignment explanation
Indices: 93130037--93130142 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
93130027 CATTCAAGAT
*
93130037 CTTGGGATTGAGAAGTCTAGATATCTCGTTTAGGAG
1 CTTGGGATTGAGAAGACTAGATATCTCGTTTAGGAG
*
93130073 CTT--G--T-A-AAGACTAGATATCGCGTTTAGGAG
1 CTTGGGATTGAGAAGACTAGATATCTCGTTTAGGAG
* *
93130103 CTTGGGATTGAGAAGAC-ATGATATCTTGTTCAGGAG
1 CTTGGGATTGAGAAGACTA-GATATCTCGTTTAGGAG
93130139 CTTG
1 CTTG
93130143 AAAAGATCCG
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
30 25 0.43
31 1 0.02
32 2 0.03
34 2 0.03
35 2 0.03
36 26 0.45
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.32
Consensus pattern (36 bp):
CTTGGGATTGAGAAGACTAGATATCTCGTTTAGGAG
Found at i:93135668 original size:47 final size:47
Alignment explanation
Indices: 93135614--93135807 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
93135604 TTAGGATTTT
** * *
93135614 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
93135661 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
* * *
93135708 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
* * * * * *
93135755 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
93135802 ATGTGA
1 ATGTGA
93135808 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
Found at i:93135714 original size:22 final size:22
Alignment explanation
Indices: 93135643--93135714 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
93135633 GTATATATGA
93135643 GATAAGGCCGAATGACCAATGT
1 GATAAGGCCGAATGACCAATGT
* * *
93135665 GATGAATG-TGAACATG-CATATATGT
1 GAT-AAGGCCG-A-ATGAC-CA-ATGT
93135690 GATAAGGCCGAATGACCAATGT
1 GATAAGGCCGAATGACCAATGT
93135712 GAT
1 GAT
93135715 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGACCAATGT
Found at i:93135930 original size:98 final size:96
Alignment explanation
Indices: 93135778--93135961 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
93135768 GAACATGCAT
* * *
93135778 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGACGAATGGCTAATGGGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
93135843 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
93135874 ATATGTGGTAAAGACGAATGG-TCAATGGGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGACGAATGGCT-AATGGG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
93135938 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
93135962 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.31
97 2 0.02
98 53 0.65
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGACGAATGGCTAATGGGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:93135977 original size:50 final size:48
Alignment explanation
Indices: 93135777--93135961 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
93135767 TGAACATGCA
93135777 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
93135825 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
93135873 CATATGTGGTAAAGACGAATGG-TCAATGGGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
93135923 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
93135962 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 79 0.64
49 4 0.03
50 39 0.31
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:93136209 original size:37 final size:37
Alignment explanation
Indices: 93136108--93136222 Score: 158
Period size: 37 Copynumber: 3.1 Consensus size: 37
93136098 GGAAATATAT
* *
93136108 TCTGCGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
93136145 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* ** * *
93136182 TCTGGGTAAGACCCGATAACTTTGTGTGGATATTTCG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
93136219 TCTG
1 TCTG
93136223 AGCTAAAGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (37 bp):
TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:93147206 original size:31 final size:31
Alignment explanation
Indices: 93147168--93147228 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
93147158 GCGTTGAGAG
93147168 ATAGAGTATTTTGTGGGAGACTTCGTTTTTT
1 ATAGAGTATTTTGTGGGAGACTTCGTTTTTT
93147199 ATAGAGTATTTTGTGGGAGACTTCGTTTTT
1 ATAGAGTATTTTGTGGGAGACTTCGTTTTT
93147229 CGCAAGGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.20, C:0.07, G:0.26, T:0.48
Consensus pattern (31 bp):
ATAGAGTATTTTGTGGGAGACTTCGTTTTTT
Found at i:93151342 original size:39 final size:39
Alignment explanation
Indices: 93151299--93151442 Score: 209
Period size: 39 Copynumber: 3.7 Consensus size: 39
93151289 ACCAGCTTGA
* * * * *
93151299 AGCCTGCAGGA-CTTTAGCCCGGACATATTTCCAGCACGT
1 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
* *
93151338 AGCCTGTGGACCTTAAGTCCGGTTATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
93151377 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
93151416 AGCCTGCGGACCTTAAGTCCGGATATA
1 AGCCTGCGGACCTTAAGTCCGGATATA
93151443 CATCACTGAA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 3 0.03
39 92 0.97
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:93154044 original size:16 final size:16
Alignment explanation
Indices: 93154023--93154055 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
93154013 AGAAGGGAAA
93154023 AGCCCCCCACAATAAT
1 AGCCCCCCACAATAAT
93154039 AGCCCCCCACAATAAT
1 AGCCCCCCACAATAAT
93154055 A
1 A
93154056 ACCTTACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.42, G:0.06, T:0.12
Consensus pattern (16 bp):
AGCCCCCCACAATAAT
Found at i:93160038 original size:35 final size:35
Alignment explanation
Indices: 93159980--93160097 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
93159970 AATCATATCT
93159980 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
93160017 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
93160052 TCTAAGATTGTATCATATCTAAGATTCCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
93160088 TCTAAGATTG
1 TCTAAGATTG
93160098 CATATCATTG
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 53 0.68
36 15 0.19
37 10 0.13
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:93160951 original size:207 final size:207
Alignment explanation
Indices: 93160494--93161287 Score: 1365
Period size: 207 Copynumber: 3.8 Consensus size: 207
93160484 AAATCTGCTT
* * * * * *
93160494 CTTCAATTTGTTCCCTGATAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
** *
93160559 GTGAAAGCCAAATCAGCTATGTCTTCGATTTACTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * *
93160624 GGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
93160688 GGAGACGCCAAA
196 GGAGACGCCAAA
* *
93160700 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGTTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
93160765 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
93160830 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
93160895 GGAGACGCCAAA
196 GGAGACGCCAAA
*
93160907 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
93160972 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
93161037 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
93161102 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * * *
93161114 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
*
93161179 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
93161244 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATG
93161288 CTTTAACCTG
Statistics
Matches: 560, Mismatches: 27, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
206 124 0.22
207 436 0.78
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:93161450 original size:87 final size:83
Alignment explanation
Indices: 93161293--93161580 Score: 348
Period size: 84 Copynumber: 3.4 Consensus size: 83
93161283 CTATGCTTTA
* * * *
93161293 ACCTGTTACCCTACGGCTTAAGGGG-TTAAGTCGCA-TC-TTCGATCTGCTCCGCTACTGCTTAG
1 ACCTGTTACCCTACTGCTT-AGGGGATTAAGGCG-AGTCGTT-GATCTGTTCCACTACTGCTTAG
**
93161355 GGAGATAAGATCCACAATTTT
63 GGAGATAAGATCTGCAATTTT
* *
93161376 GACCTGTTACCTTACTGCTTAGGGGATTAAGGCGAGTGGCCGTTGATTTGTTCCACTACTGCTTA
1 -ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGT---CGTTGATCTGTTCCACTACTGCTTA
*
93161441 GGGAGATAAGATCTGTAATTTT
62 GGGAGATAAGATCTGCAATTTT
* * * *
93161463 AGCCTGTTACCCTACTGCTTAGGGGGTTACGGTGAGTCTTTGATCTGTTCCACTACTGCTTAGGG
1 A-CCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTTGATCTGTTCCACTACTGCTTAGGG
*
93161528 AGATAAGATCTGCAAATTTA
65 AGATAAGATCTGC-AATTTT
93161548 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
93161581 CTGAATTTTG
Statistics
Matches: 176, Mismatches: 20, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
83 6 0.03
84 92 0.52
85 6 0.03
86 1 0.01
87 69 0.39
88 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (83 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTTGATCTGTTCCACTACTGCTTAGGGA
GATAAGATCTGCAATTTT
Found at i:93161485 original size:43 final size:42
Alignment explanation
Indices: 93161431--93161570 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 42
93161421 ATTTGTTCCA
93161431 CTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTA-CCTGTTACC
* * * * ** * * *
93161474 CTACTGCTTAGGGGGTTACGGTGAGT-CTTTGATCTGTT-CC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTACCTGTTACC
* *
93161514 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTG-TAATTTTACCTGTTACC
93161558 CTACTGCTTAGGG
1 CTACTGCTTAGGG
93161571 GATTAAGGCG
Statistics
Matches: 74, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
40 2 0.03
41 24 0.32
42 4 0.05
43 42 0.57
44 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (42 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTACCTGTTACC
Found at i:93162547 original size:13 final size:13
Alignment explanation
Indices: 93162529--93162588 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
93162519 GCCTCTCCAT
93162529 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
93162542 TTTTTCTTTTTT-
1 TTTTTCTTTTTTC
*
93162554 TTTCTC-TTTTTC
1 TTTTTCTTTTTTC
93162566 TTTTAT-TTTTTTCC
1 TTTT-TCTTTTTT-C
93162580 TTTTT-TTTT
1 TTTTTCTTTT
93162589 AAATAGAAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
11 5 0.12
12 8 0.20
13 23 0.56
14 5 0.12
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:93162563 original size:24 final size:22
Alignment explanation
Indices: 93162528--93162585 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
93162518 GGCCTCTCCA
*
93162528 TTTTTTCTTTTTTCTTTTTCTTT
1 TTTTTTCTTTTTTC-TTTTATTT
93162551 TTTTTTCTCTTTTTCTTTTA-TT
1 TTTTTTCT-TTTTTCTTTTATTT
*
93162573 TTTTTCCTTTTTT
1 TTTTTTCTTTTTT
93162586 TTTAAATAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 5 0.16
22 9 0.28
23 12 0.38
24 6 0.19
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTTCTTTTTTCTTTTATTT
Found at i:93162564 original size:31 final size:32
Alignment explanation
Indices: 93162529--93162588 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
93162519 GCCTCTCCAT
93162529 TTTTTCTTTT-TTCTTTTT-CTTTTTTTTTCTC
1 TTTTTCTTTTATT-TTTTTCCTTTTTTTTTCTC
93162560 TTTTTCTTTTATTTTTTTCCTTTTTTTTT
1 TTTTTCTTTTATTTTTTTCCTTTTTTTTT
93162589 AAATAGAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (32 bp):
TTTTTCTTTTATTTTTTTCCTTTTTTTTTCTC
Found at i:93166342 original size:40 final size:40
Alignment explanation
Indices: 93166289--93166480 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
93166279 TATTACCACA
* * * * *
93166289 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * *
93166329 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
93166369 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
93166409 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
93166449 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
93166481 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 136 0.97
41 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:93171933 original size:17 final size:18
Alignment explanation
Indices: 93171901--93172043 Score: 175
Period size: 17 Copynumber: 7.9 Consensus size: 18
93171891 AATCATATCT
*
93171901 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
93171920 TATAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
93171937 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
93171955 TATAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
93171972 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
93171990 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
* *
93172007 TCTAAGATTCCATATCACA
1 TCTAAGATTGC-TATCATA
93172026 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
93172044 TGAAGATTAT
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
17 46 0.43
18 31 0.29
19 31 0.29
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:93171958 original size:35 final size:36
Alignment explanation
Indices: 93171901--93172035 Score: 211
Period size: 35 Copynumber: 3.8 Consensus size: 36
93171891 AATCATATCT
*
93171901 TCTAAGATTGTATATCATATATAAGATTGTATCATA
1 TCTAAGATTGCATATCATATATAAGATTGTATCATA
93171937 TCTAAGATTGCA-ATCATATATAAGATTGTATCATA
1 TCTAAGATTGCATATCATATATAAGATTGTATCATA
*
93171972 TCTAAGATTGCA-ATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATATAAGATTGTATCATA
* * *
93172007 TCTAAGATTCCATATCACATCTAAGATTG
1 TCTAAGATTGCATATCATATATAAGATTG
93172036 CATATCATTG
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
35 68 0.72
36 26 0.28
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGCATATCATATATAAGATTGTATCATA
Found at i:93172050 original size:36 final size:35
Alignment explanation
Indices: 93171922--93172051 Score: 147
Period size: 35 Copynumber: 3.7 Consensus size: 35
93171912 ATATCATATA
* * * *
93171922 TAAGATTGTATCATATCTAAGATTGCAATCATATA
1 TAAGATTGTATCATATCGAAGATTCCAATCACATC
* * *
93171957 TAAGATTGTATCATATCTAAGATTGCAATCATATC
1 TAAGATTGTATCATATCGAAGATTCCAATCACATC
*
93171992 TAAGATTGTATCATATCTAAGATTCCATATCACATC
1 TAAGATTGTATCATATCGAAGATTCCA-ATCACATC
93172028 TAAGATTGCATATCAT-T-GAAGATT
1 TAAGATTG--TATCATATCGAAGATT
93172052 ATATTTCCAT
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
35 60 0.68
36 21 0.24
37 1 0.01
38 6 0.07
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TAAGATTGTATCATATCGAAGATTCCAATCACATC
Done.