Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 286 of 356
Found at i:93172747 original size:30 final size:30
Alignment explanation
Indices: 93172690--93172747 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
93172680 TATAATTTCA
*
93172690 TTTTATTTTTATTATAATTTGGCCCTAACC
1 TTTTATTTTTATTATAATTTAGCCCTAACC
* *
93172720 TTTTATTTTTGTT-TCAATTTAGTCCTAA
1 TTTTATTTTTATTAT-AATTTAGCCCTAA
93172748 AGGCCATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.22, C:0.14, G:0.07, T:0.57
Consensus pattern (30 bp):
TTTTATTTTTATTATAATTTAGCCCTAACC
Found at i:93172938 original size:29 final size:29
Alignment explanation
Indices: 93172906--93172962 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
93172896 TTTTAATCCT
*
93172906 TTTTAAATTTTTTATATATAATTTATTTA
1 TTTTAAATATTTTATATATAATTTATTTA
*
93172935 TTTTAAATATTTTATATATTATTTATTT
1 TTTTAAATATTTTATATATAATTTATTT
93172963 TTACTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTAAATATTTTATATATAATTTATTTA
Found at i:93172964 original size:17 final size:17
Alignment explanation
Indices: 93172944--93173145 Score: 78
Period size: 17 Copynumber: 11.4 Consensus size: 17
93172934 ATTTTAAATA
93172944 TTTTATATATTATTTAT
1 TTTTATATATTATTTAT
* *
93172961 TTTTACTATA-AACATTAT
1 TTTTA-TATATTA-TTTAT
* * * ***
93172979 TTATATATGTAAAAAAT
1 TTTTATATATTATTTAT
*
93172996 TATTATATA-TA-TTAT
1 TTTTATATATTATTTAT
*
93173011 TTTTATTTATGTA-TTAT
1 TTTTATATAT-TATTTAT
*
93173028 TTAT-TATATTATTTAT
1 TTTTATATATTATTTAT
93173044 ATTTTAT-TATATATTATAT
1 -TTTTATATAT-TATT-TAT
93173063 CATTTTAT-TATATATATTAT
1 --TTTTATATAT-TAT-TTAT
*
93173083 TCATTATATTATT-TTTATT
1 T-TTTATA-TATTATTTA-T
93173102 TTATTATATATTATATTAT
1 TT-TTATATATTAT-TTAT
93173121 ATTATTATATATTATTTAT
1 -TT-TTATATATTATTTAT
*
93173140 TATTAT
1 TTTTAT
93173146 GTATAATTTT
Statistics
Matches: 145, Mismatches: 20, Indels: 40
0.71 0.10 0.20
Matches are distributed among these distances:
15 11 0.08
16 9 0.06
17 37 0.26
18 28 0.19
19 21 0.14
20 35 0.24
21 4 0.03
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (17 bp):
TTTTATATATTATTTAT
Found at i:93173039 original size:5 final size:5
Alignment explanation
Indices: 93172996--93173145 Score: 88
Period size: 5 Copynumber: 30.2 Consensus size: 5
93172986 TGTAAAAAAT
*
93172996 TATTA TA-TA TATTA T-TTT TATT- TATGTA TTATT- TATTA TATTA T-TTA
1 TATTA TATTA TATTA TATTA TATTA TAT-TA -TATTA TATTA TATTA TATTA
* *
93173043 TATTT TATTA TA-TA T-TATA TCATTT TATTA TA-TA TATTA TTCATTA
1 TATTA TATTA TATTA TAT-TA T-ATTA TATTA TATTA TATTA -T-ATTA
* *
93173089 TATTA T-TTT TATTT TATTATA TATTA TATTA TATTA T-TATA TATTA
1 TATTA TATTA TATTA TA-T-TA TATTA TATTA TATTA TAT-TA TATTA
93173135 T-TTA TTATTA T
1 TATTA -TATTA T
93173146 GTATAATTTT
Statistics
Matches: 117, Mismatches: 7, Indels: 42
0.70 0.04 0.25
Matches are distributed among these distances:
4 32 0.27
5 63 0.54
6 11 0.09
7 11 0.09
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (5 bp):
TATTA
Found at i:93173081 original size:55 final size:53
Alignment explanation
Indices: 93172995--93173142 Score: 203
Period size: 55 Copynumber: 2.8 Consensus size: 53
93172985 ATGTAAAAAA
*
93172995 TTATTATATA-TAT-TATTTTTATTTATGTATTATTTATTATATTATTTATATT
1 TTATTATATATTATATA-TTTTATTTATATATTATTTATTATATTATTTATATT
* *
93173047 TTATTATATATTATATCATTTTATTATATATATTATTCATTATATTATTTTTATT
1 TTATTATATATTATAT-ATTTTATT-TATATATTATTTATTATATTATTTATATT
*
93173102 TTATTATATATTATATTATATTA-TTATATATTATTTATTAT
1 TTATTATATATTATA-TATTTTATTTATATATTATTTATTAT
93173143 TATGTATAAT
Statistics
Matches: 86, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
52 10 0.12
53 19 0.22
54 9 0.10
55 47 0.55
56 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (53 bp):
TTATTATATATTATATATTTTATTTATATATTATTTATTATATTATTTATATT
Found at i:93173143 original size:72 final size:71
Alignment explanation
Indices: 93172994--93173150 Score: 187
Period size: 72 Copynumber: 2.2 Consensus size: 71
93172984 TATGTAAAAA
* *
93172994 ATTATTATATATATTATTTTTATTTATGTATTATTTATTATATTATTTATATTTTATTATATATT
1 ATTATTATATATATTATTATTATTTATGTATTATTTATTATATTATTTATATATTATTATATATT
93173059 ATATCAT
66 ATAT-AT
* *
93173066 TTTATTATATATATTATTCATTATATTAT-TTTTATTTTATTATA-TATTATATTATATTATTAT
1 ATTATTATATATATTATT-ATTAT-TTATGTATTA-TTTATTATATTATT-TA-TATATTATTAT
93173129 ATATTAT-T-T
61 ATATTATATAT
*
93173138 ATTATTATGTATA
1 ATTATTATATATA
93173151 ATTTTAAAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
72 29 0.39
73 12 0.16
74 16 0.22
75 17 0.23
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (71 bp):
ATTATTATATATATTATTATTATTTATGTATTATTTATTATATTATTTATATATTATTATATATT
ATATAT
Found at i:93173551 original size:18 final size:18
Alignment explanation
Indices: 93173528--93173562 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
93173518 ATCTCATAAA
93173528 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
93173546 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
93173563 ATATTTGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:93173749 original size:119 final size:112
Alignment explanation
Indices: 93173604--93173817 Score: 275
Period size: 112 Copynumber: 1.8 Consensus size: 112
93173594 ATATTTTAAG
* * * **
93173604 TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCATTGTTTT
1 TTATATCTGCATGAAATATTA----ATGTATATTATGTAATTTATATCGTTAT-TT-ATCATTTT
* * *
93173669 CTATGTTGTATTTTGCATGAAATGTTAATGTATGTATATTTATGTTATTTATGC
60 CTATATTATA-TTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGC
* *
93173723 TTATATCTGCATGAAATGTTAATGTATATTATGTAATTTATGTCGTTATTTATCATTTTCTATAT
1 TTATATCTGCATGAAATATTAATGTATATTATGTAATTTATATCGTTATTTATCATTTTCTATAT
93173788 TATATTTGCATGAAATGTTAAAGTATGTAT
66 TATATTTGCATGAAATGTTAAAGTATGTAT
93173818 CATGTATTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
112 25 0.29
113 14 0.16
114 2 0.02
115 25 0.29
119 19 0.22
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.52
Consensus pattern (112 bp):
TTATATCTGCATGAAATATTAATGTATATTATGTAATTTATATCGTTATTTATCATTTTCTATAT
TATATTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGC
Found at i:93178269 original size:25 final size:25
Alignment explanation
Indices: 93178188--93178262 Score: 123
Period size: 25 Copynumber: 3.0 Consensus size: 25
93178178 CCATGCAAGT
*
93178188 TCAACCATCGCTCTTAGAGAAAGAA
1 TCAACCACCGCTCTTAGAGAAAGAA
* *
93178213 TCAACCACTGCTCTTGGAGAAAGAA
1 TCAACCACCGCTCTTAGAGAAAGAA
93178238 TCAACCACCGCTCTTAGAGAAAGAA
1 TCAACCACCGCTCTTAGAGAAAGAA
93178263 ACTACCATGT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (25 bp):
TCAACCACCGCTCTTAGAGAAAGAA
Found at i:93185401 original size:43 final size:45
Alignment explanation
Indices: 93185337--93185883 Score: 178
Period size: 45 Copynumber: 12.2 Consensus size: 45
93185327 TAGATCACCA
93185337 ATAGCAGATTTGGCATCTCTGTATT-GACGGGGAACAAATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * *
93185381 A-AGCAGATTTGGCATTTCTGTATTAGACGGGGAGCAGATCGAAG
1 ATAGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * * * *** *
93185425 ATAGCAGATCTGACAT-TCGTGTGTT-TACATCGAAGCAGATCGAAG
1 ATAGCAGATTTGGCATCTC-TGTATTAGACGGGGAA-CAAATCGAAG
* * * *
93185470 AT-GACAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * * * * *** *
93185515 ATGGCAGATCTGACAT-TCGTGTGTT-TACATAGAAGCAGATCGAAG
1 ATAGCAGATTTGGCATCTC-TGTATTAGACGGGGAA-CAAATCGAAG
* * * * *
93185560 AT-GATAGATTTGGCGTCTCTGTATTAGATGGGGAGA-AGATCGAGG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGA-ACAAATCGAAG
* * * * * *** * *
93185605 ATAGCATATCTGACAT-TCGTGTGTT-TACATCGAAGCAGATCAAAG
1 ATAGCAGATTTGGCATCTC-TGTATTAGACGGGGAA-CAAATCGAAG
** *
93185650 AT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* * ** * * * * **** * *
93185695 ATAGCGGATCTAACATTTGTGTGTT-TACATCAAAGAAGATCGAAA
1 ATAGCAGATTTGGCATCTCTGTATTAGACGGGGAACAA-ATCGAAG
* * * *
93185740 AT-GACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
* ** * * * * * *
93185785 ATAGCAGATCTGATATTTGTGTGATTACATC---AAAGCAGATCGAAA
1 ATAGCAGATTTGGCATCTCTGT-ATTAGA-CGGGGAA-CAAATCGAAG
*
93185830 AT-GACAGATTTGGCATCTCTGTATTAGAC-GGGAAGCAAGTCGAAG
1 ATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAA-CAAATCGAAG
93185875 ATAGCAGAT
1 ATAGCAGAT
93185884 CTGACATTCG
Statistics
Matches: 351, Mismatches: 119, Indels: 65
0.66 0.22 0.12
Matches are distributed among these distances:
43 24 0.07
44 50 0.14
45 245 0.70
46 30 0.09
47 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (45 bp):
ATAGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCGAAG
Found at i:93185491 original size:90 final size:90
Alignment explanation
Indices: 93185374--93185960 Score: 829
Period size: 90 Copynumber: 6.5 Consensus size: 90
93185364 CGGGGAACAA
* * *
93185374 ATCGAAGAAG-CAGATTTGGCATTTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
93185438 CATTCGTGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* *
93185463 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGATGGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
*
93185528 CATTCGTGTGTTTACATAGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * * *
93185553 ATCGAAGATGATAGATTTGGCGTCTCTGTATTAGATGGGGAGAAGATCGAGGATAGCATATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
93185618 CATTCGTGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * * *
93185643 ATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGATAGCGGATCTAA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * *
93185708 CATTTGTGTGTTTACATCAAAGAAG
66 CATTCGTGTGTTTACATCGAAGCAG
* *
93185733 ATCGAAAATGACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * * *
93185798 TATTTGTGTGATTACATCAAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * *
93185823 ATCGAAAATGACAGATTTGGCATCTCTGTATTAGACGGGAAGCA-AGTCGAAGATAGCAGATCTG
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGA-TCGAAGATAGCAGATCTG
* *
93185887 ACATTCGCGTGTTTATATCGAAGCAG
65 ACATTCGTGTGTTTACATCGAAGCAG
** * *
93185913 ATAAAAAAT-AGCAGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATC
1 ATCGAAGATGA-CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC
93185961 AAGGATATTA
Statistics
Matches: 446, Mismatches: 48, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
89 11 0.02
90 434 0.97
91 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
CATTCGTGTGTTTACATCGAAGCAG
Found at i:93187431 original size:26 final size:26
Alignment explanation
Indices: 93187402--93187509 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
93187392 TGGTACAAAT
93187402 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
93187428 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93187454 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
93187480 TGGTAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93187506 TGAT
1 TGAT
93187510 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93189165 original size:27 final size:26
Alignment explanation
Indices: 93189135--93189271 Score: 175
Period size: 27 Copynumber: 5.1 Consensus size: 26
93189125 AGCGTCCTGA
93189135 TGGCTATGCCACAATTATCTGATCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGG
* *
93189162 TGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACAT-TATCTGATCTGG
93189189 TGGCTATGCCACGATTATCTGATCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGG
* *
93189216 TGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACAT-TATCTGATCTGG
* *
93189243 TGGCTTTGCCACAATATCTGTATCTGG
1 TGGCTATGCCACATTATCTG-ATCTGG
93189270 TG
1 TG
93189272 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 10 0.10
27 85 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
TGGCTATGCCACATTATCTGATCTGG
Found at i:93189217 original size:54 final size:53
Alignment explanation
Indices: 93189135--93189271 Score: 229
Period size: 54 Copynumber: 2.5 Consensus size: 53
93189125 AGCGTCCTGA
93189135 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
93189189 TGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
* *
93189243 TGGCTTTGCCACAATATCTGTATCTGGTG
1 TGGCTATGCCACATTATCTG-ATCTGGTG
93189272 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (53 bp):
TGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
Found at i:93189282 original size:27 final size:27
Alignment explanation
Indices: 93189142--93189289 Score: 148
Period size: 27 Copynumber: 5.5 Consensus size: 27
93189132 TGATGGCTAT
93189142 GCCACAATTATCTG-ATCTGGTGGC-TC
1 GCCACAA-TATCTGTATCTGGTGGCTTC
93189168 TGCCACATATATCTGT-TCTGGTGGCTAT-
1 -GCCACA-ATATCTGTATCTGGTGGCT-TC
*
93189196 GCCACGATTATCTG-ATCTGGTGGC-TC
1 GCCAC-AATATCTGTATCTGGTGGCTTC
*
93189222 TGCCACATATATCTGT-TCTGGTGGCTTT
1 -GCCACA-ATATCTGTATCTGGTGGCTTC
*
93189250 GCCACAATATCTGTATCTGGTGACTTC
1 GCCACAATATCTGTATCTGGTGGCTTC
*
93189277 GTCACAATATCTG
1 GCCACAATATCTG
93189290 GCAGCCTCGC
Statistics
Matches: 103, Mismatches: 6, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
25 1 0.01
26 9 0.09
27 89 0.86
28 3 0.03
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
GCCACAATATCTGTATCTGGTGGCTTC
Found at i:93190524 original size:29 final size:29
Alignment explanation
Indices: 93190492--93190548 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
93190482 TTTTAATCCT
*
93190492 TTTTAAATTTTTTATATATAATTTATTTA
1 TTTTAAATATTTTATATATAATTTATTTA
*
93190521 TTTTAAATATTTTATATATTATTTATTT
1 TTTTAAATATTTTATATATAATTTATTT
93190549 TTACTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTAAATATTTTATATATAATTTATTTA
Found at i:93190612 original size:29 final size:29
Alignment explanation
Indices: 93190580--93190746 Score: 128
Period size: 32 Copynumber: 5.4 Consensus size: 29
93190570 TATGTAAAAA
*
93190580 ATTATTATATATATTATTTTTATTTATGT
1 ATTATTATATATATTATTTTTATTTATAT
93190609 ATTATTTATTATATTATTTATATTTTATTATATAT
1 ATTA-TTA-TATA-TA-TTAT-TTTTATT-TATAT
*
93190644 TTTATTATATAT-TATATCATTTTATTATATAT
1 ATTATTATATATAT-TAT--TTTTATT-TATAT
93190676 ATTATTCAT-TATATTATTTTTATTT-TATT
1 ATTATT-ATATATATTATTTTTATTTATA-T
* *
93190705 ATATATTAT-TATATTA-TTATATATTATTT
1 AT-TATTATATATATTATTTTTAT-TTATAT
*
93190734 ATTATTATGTATA
1 ATTATTATATATA
93190747 ATTTTAAAAA
Statistics
Matches: 118, Mismatches: 5, Indels: 30
0.77 0.03 0.20
Matches are distributed among these distances:
28 13 0.11
29 26 0.22
30 16 0.14
31 7 0.06
32 28 0.24
33 11 0.09
34 10 0.08
35 7 0.06
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (29 bp):
ATTATTATATATATTATTTTTATTTATAT
Found at i:93190633 original size:67 final size:66
Alignment explanation
Indices: 93190576--93190738 Score: 183
Period size: 67 Copynumber: 2.5 Consensus size: 66
93190566 TATATATGTA
* *
93190576 AAAAATTATTATATA-TAT-TATTTTTATT-TATGTATTATTTATTATATTATTTATATTTTATT
1 AAAAATTATTATATATTATATA-TTTTATTATATATATTATTCATTATATTATTTATATTTTATT
93190638 AT
65 AT
* ** *
93190640 ATATTTTATTATATATTATATCATTTTATTATATATATTATTCATTATATTATTTTTATTTTATT
1 AAAAATTATTATATATTATAT-ATTTTATTATATATATTATTCATTATATTATTTATATTTTATT
93190705 AT
65 AT
*
93190707 --ATATTATTATATTATTATATATTATTTATTAT
1 AAAAATTATTATA-TATTATATA-T-TTTATTAT
93190739 TATGTATAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
64 12 0.14
65 14 0.16
66 17 0.20
67 42 0.49
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (66 bp):
AAAAATTATTATATATTATATATTTTATTATATATATTATTCATTATATTATTTATATTTTATTA
T
Found at i:93190677 original size:55 final size:53
Alignment explanation
Indices: 93190580--93190752 Score: 189
Period size: 55 Copynumber: 3.3 Consensus size: 53
93190570 TATGTAAAAA
* * *
93190580 ATTATTATATATATTATT-TTTATT-TATGTATTATTTATTATATTATTTATAT
1 ATTATTATATATTTTATTATATATTATATATATTATTTA-TATATTATTTATAT
* * *
93190632 TTTATTATATATTTTATTATATATTATATCATTTTATTATATATATTATTCATTAT
1 ATTATTATATATTTTATTATATATTATAT-ATATTATT-TATATATTATTTA-TAT
*
93190688 ATTATT-TTTATTTTATTATATATTAT-TATATTA-TTATATATTATTTAT-T
1 ATTATTATATATTTTATTATATATTATATATATTATTTATATATTATTTATAT
93190737 ATTATGTATA-ATTTTA
1 ATTAT-TATATATTTTA
93190753 AAAATTTGTA
Statistics
Matches: 103, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
49 6 0.06
50 8 0.08
51 13 0.13
52 17 0.17
53 10 0.10
54 4 0.04
55 35 0.34
56 10 0.10
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (53 bp):
ATTATTATATATTTTATTATATATTATATATATTATTTATATATTATTTATAT
Found at i:93191145 original size:18 final size:18
Alignment explanation
Indices: 93191122--93191156 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
93191112 ATCTCATAAA
93191122 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
93191140 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
93191157 ATATTTGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:93191343 original size:119 final size:112
Alignment explanation
Indices: 93191198--93191411 Score: 266
Period size: 115 Copynumber: 1.8 Consensus size: 112
93191188 ATATTTTAAG
* * * **
93191198 TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCATTGTTTT
1 TTATATCTGCATGAAATATTA----ATGTATATTATGTAATTTATATCGTTAT-TT-ATCATTTT
* * * *
93191263 CTATGTTGTATTTTGCATGAAATGTTAATGTATGTATATTTATGTTATTTACGA
60 CTATATTATA-TTTGCATAAAATGTTAAAGTATGTATATTTATGTTATTTACGA
* *
93191317 TTATATCTGCATGAAATGTTAATGTATATTATGTAATTTATGTCGTTATTTATCATTTTCTATAT
1 TTATATCTGCATGAAATATTAATGTATATTATGTAATTTATATCGTTATTTATCATTTTCTATAT
93191382 TATATTTGCATAAAATGTTAAAGTATGTAT
66 TATATTTGCATAAAATGTTAAAGTATGTAT
93191412 CAAGTATTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
112 24 0.29
113 14 0.17
114 2 0.02
115 25 0.30
119 19 0.23
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (112 bp):
TTATATCTGCATGAAATATTAATGTATATTATGTAATTTATATCGTTATTTATCATTTTCTATAT
TATATTTGCATAAAATGTTAAAGTATGTATATTTATGTTATTTACGA
Found at i:93192822 original size:26 final size:26
Alignment explanation
Indices: 93192793--93192900 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
93192783 TGGTACAAAT
*
93192793 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
93192819 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
93192845 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
93192871 TAATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
93192897 TGAT
1 TGAT
93192901 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:93192855 original size:52 final size:52
Alignment explanation
Indices: 93192793--93192900 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
93192783 TGGTACAAAT
*
93192793 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
*
93192845 TGATAATGGGTTAGGTAAATGTTCCATAATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
93192897 TGAT
1 TGAT
93192901 GGGCATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATAATAATGGATTAGGTAAATATTCCA
Found at i:93197727 original size:19 final size:20
Alignment explanation
Indices: 93197703--93197747 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
93197693 ATGAAGGTTT
*
93197703 AATTAATCATGATTAAGT-A
1 AATTAATCAAGATTAAGTAA
* *
93197722 AATTAATTAAGATTAATTAA
1 AATTAATCAAGATTAAGTAA
93197742 AATTAA
1 AATTAA
93197748 ACTAAGTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (20 bp):
AATTAATCAAGATTAAGTAA
Found at i:93199194 original size:18 final size:18
Alignment explanation
Indices: 93199171--93199207 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
93199161 TTGAAACTAG
93199171 TTATAAATGATGAAATAT
1 TTATAAATGATGAAATAT
93199189 TTATAAATGATGAAATAT
1 TTATAAATGATGAAATAT
93199207 T
1 T
93199208 GGTAAGGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.41
Consensus pattern (18 bp):
TTATAAATGATGAAATAT
Found at i:93227676 original size:31 final size:31
Alignment explanation
Indices: 93227641--93227702 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
93227631 GCGTCGAGAG
*
93227641 ATAGAGTATTTTGTAGGAGACTTCATTTTTT
1 ATAGAGAATTTTGTAGGAGACTTCATTTTTT
* *
93227672 ATAGAGAATTTTGTGGGAGACTTCGTTTTTT
1 ATAGAGAATTTTGTAGGAGACTTCATTTTTT
93227703 CTCAAGGTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.06, G:0.23, T:0.47
Consensus pattern (31 bp):
ATAGAGAATTTTGTAGGAGACTTCATTTTTT
Found at i:93234952 original size:93 final size:93
Alignment explanation
Indices: 93234793--93234963 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
93234783 GGATGGTTGA
* * *
93234793 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
93234858 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
93234886 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
93234951 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
93234964 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:93234966 original size:46 final size:46
Alignment explanation
Indices: 93234797--93234968 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
93234787 GGTTGAGCAT
* * * *
93234797 CCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
93234843 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
93234888 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
93234936 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93234969 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 59 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:93236313 original size:17 final size:17
Alignment explanation
Indices: 93236293--93236333 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
93236283 TTTTTCATAT
*
93236293 TTAAAAATTTTAACAAA
1 TTAAAAATTTTAAAAAA
93236310 TT-AAAATTTTAAAAAA
1 TTAAAAATTTTAAAAAA
*
93236326 ATAAAAAT
1 TTAAAAAT
93236334 ATGAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (17 bp):
TTAAAAATTTTAAAAAA
Found at i:93236768 original size:20 final size:18
Alignment explanation
Indices: 93236745--93236806 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
93236735 TATTTTTTAT
93236745 ATTTTTATTTATTCTAAACA
1 ATTTTTATTTATT-TAAA-A
*
93236765 ATTTTTA-TTATTTCAAA
1 ATTTTTATTTATTTAAAA
93236782 ATTCTTTATTT-TTTAAAA
1 ATT-TTTATTTATTTAAAA
*
93236800 AATTTTA
1 ATTTTTA
93236807 AATTTTTATG
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 8 0.22
18 15 0.41
19 7 0.19
20 7 0.19
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTATTTATTTAAAA
Found at i:93238303 original size:19 final size:19
Alignment explanation
Indices: 93238276--93238366 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
93238266 ATAATCTTCA
*
93238276 ATGATATGCAATCTTAGAT
1 ATGACATGCAATCTTAGAT
93238295 ATGACATGCAATCTTAGAT
1 ATGACATGCAATCTTAGAT
93238314 ATGACA--CAATCTTAGAT
1 ATGACATGCAATCTTAGAT
*
93238331 ATGA-TTGCAATCTTAGAT
1 ATGACATGCAATCTTAGAT
*
93238349 ATGATATGCAATCTTAGA
1 ATGACATGCAATCTTAGA
93238367 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 15 0.23
19 36 0.55
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (19 bp):
ATGACATGCAATCTTAGAT
Found at i:93238347 original size:35 final size:37
Alignment explanation
Indices: 93238283--93238366 Score: 127
Period size: 35 Copynumber: 2.3 Consensus size: 37
93238273 TCAATGATAT
93238283 GCAATCTTAGATATGACATGCAATCTTAGATATGACA
1 GCAATCTTAGATATGACATGCAATCTTAGATATGACA
* *
93238320 -CAATCTTAGATATGA-TTGCAATCTTAGATATGATA
1 GCAATCTTAGATATGACATGCAATCTTAGATATGACA
93238355 TGCAATCTTAGA
1 -GCAATCTTAGA
93238367 AGATATGATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 18 0.42
36 15 0.35
37 10 0.23
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (37 bp):
GCAATCTTAGATATGACATGCAATCTTAGATATGACA
Found at i:93242696 original size:27 final size:27
Alignment explanation
Indices: 93242665--93242842 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
93242655 TAAATTGTAC
93242665 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
93242692 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
93242718 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
93242746 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
93242774 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
93242801 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
93242828 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
93242843 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:93242779 original size:82 final size:81
Alignment explanation
Indices: 93242666--93242821 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
93242656 AAATTGTACA
* *
93242666 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
93242730 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
93242747 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
93242812 TGCGAGTTGA
65 TGCGAATTGA
93242822 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:93242833 original size:82 final size:81
Alignment explanation
Indices: 93242662--93242842 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
93242652 GATTAAATTG
* *
93242662 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
93242727 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
93242743 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
93242807 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
93242825 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
93242843 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:93250547 original size:27 final size:27
Alignment explanation
Indices: 93250516--93250693 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
93250506 TAAATTGTAC
93250516 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
93250543 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
93250569 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
93250597 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
93250625 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
93250652 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
93250679 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
93250694 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:93250630 original size:82 final size:81
Alignment explanation
Indices: 93250517--93250672 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
93250507 AAATTGTACA
* *
93250517 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
93250581 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
93250598 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
93250663 TGCGAGTTGA
65 TGCGAATTGA
93250673 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:93250684 original size:82 final size:81
Alignment explanation
Indices: 93250513--93250693 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
93250503 GATTAAATTG
* *
93250513 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
93250578 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
93250594 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
93250658 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
93250676 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
93250694 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:93262026 original size:78 final size:78
Alignment explanation
Indices: 93261799--93262168 Score: 510
Period size: 78 Copynumber: 4.8 Consensus size: 78
93261789 AAAGAAACAA
* * *
93261799 ATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
* *
93261864 CAGATCTAAGATA
66 CAGATCCAAGATG
* * * * * * *
93261877 ATTTGGCATCTCTGTATTAAACGGGGAGAAGAT-GAAGACACAACAGACCTGATCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
93261941 CAGATCCAAGATG
66 CAGATCCAAGATG
* * * *
93261954 ATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACACAACAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
*
93262019 TAGATCCAAGATG
66 CAGATCCAAGATG
* * *
93262032 ATTTGGCATCTCTATGTTAGACGGGGAGTAGATAGAAGACATAGCAGAT-TGGACCTTCATTGAA
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
*
93262096 ACAGATCCAAGATG
65 GCAGATCCAAGATG
* *
93262110 ATTTGGCATCTCTTTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCA
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA
93262169 CGTGTTTATG
Statistics
Matches: 260, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
77 70 0.27
78 189 0.73
79 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGATG
Found at i:93262036 original size:155 final size:156
Alignment explanation
Indices: 93261799--93262168 Score: 528
Period size: 155 Copynumber: 2.4 Consensus size: 156
93261789 AAAGAAACAA
* * *
93261799 ATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
* *
93261864 CAGATCTAAGATAATTTGGCATCTCTGTATTAAACGGGGAGAAGAT-GAAGACACAACAGACCT-
66 CAGATCCAAGATAATTTGGCATCTCTATATTAAACGGGGAGAAGATAGAAGACACAACAGA-CTG
* *
93261927 GATCTTCATTGAAGCAGATCCAAGATG
130 GACCTTCATTGAAACAGATCCAAGATG
* * * *
93261954 ATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACACAACAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
* * * * * * * *
93262019 TAGATCCAAGATGATTTGGCATCTCTATGTTAGACGGGGAGTAGATAGAAGACATAGCAGATTGG
66 CAGATCCAAGATAATTTGGCATCTCTATATTAAACGGGGAGAAGATAGAAGACACAACAGACTGG
93262084 ACCTTCATTGAAACAGATCCAAGATG
131 ACCTTCATTGAAACAGATCCAAGATG
* *
93262110 ATTTGGCATCTCTTTATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCA
1 ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA
93262169 CGTGTTTATG
Statistics
Matches: 189, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
155 98 0.52
156 91 0.48
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (156 bp):
ATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGATAATTTGGCATCTCTATATTAAACGGGGAGAAGATAGAAGACACAACAGACTGG
ACCTTCATTGAAACAGATCCAAGATG
Found at i:93262369 original size:78 final size:78
Alignment explanation
Indices: 93262240--93262615 Score: 414
Period size: 78 Copynumber: 4.7 Consensus size: 78
93262230 CAAAGAAACA
** * * *
93262240 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATAACAGATTTAACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTTAACCTTCATTGAA
93262305 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
93262318 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACACAACAGATTTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTTAACCTTCATTGAA
*
93262383 GCAAATCCAAGAT
66 GCAGATCCAAGAT
* * **
93262396 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAATAGATTGCACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTTAACCTTCATTGAA
93262461 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* ** ** * *
93262474 GATTTGACATCTCTGTATTAGACAAGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTTAACCTTCA-----
93262539 TTACATCGAAGCAGATCCAAGAT
61 -T---T-GAAGCAGATCCAAGAT
* *
93262562 AACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG--GAGATAACAGATTT
1 ----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTT
93262616 GGCATCTCTG
Statistics
Matches: 254, Mismatches: 30, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
78 194 0.76
84 1 0.00
87 1 0.00
88 16 0.06
90 10 0.04
92 32 0.13
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTTAACCTTCATTGAA
GCAGATCCAAGAT
Found at i:93262622 original size:45 final size:45
Alignment explanation
Indices: 93262548--93262747 Score: 276
Period size: 45 Copynumber: 4.5 Consensus size: 45
93262538 TTTACATCGA
*
93262548 AGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
93262593 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTATACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * ** *
93262638 AGCAGATTGAAGA-AGCAGATTTGGTGTCTCTGTATTAGACGGGT
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
93262682 AGCAGATCGAAGATAACAGATTTGACATCTCTGTATTAGACGAGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
93262727 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
93262748 ATCGCCTTCT
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
44 38 0.29
45 95 0.71
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:93262676 original size:89 final size:90
Alignment explanation
Indices: 93262548--93262747 Score: 285
Period size: 89 Copynumber: 2.2 Consensus size: 90
93262538 TTTACATCGA
* * *
93262548 AGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGA
* * *
93262613 TTTGGCATCTCTGTATTATACGGGG
66 TTTGACATCTCTGTATTAGACGAGG
** ** * *
93262638 AGCAGATTGAAGA-AGCAGATTTGGTGTCTCTGTATTAGACGGGTAGCAGATCGAAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGA
93262702 TTTGACATCTCTGTATTAGACGAGG
66 TTTGACATCTCTGTATTAGACGAGG
93262727 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
93262748 ATCGCCTTCT
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 78 0.81
90 18 0.19
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGA
TTTGACATCTCTGTATTAGACGAGG
Found at i:93263168 original size:35 final size:37
Alignment explanation
Indices: 93263097--93263194 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
93263087 ATAATCTTCA
93263097 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
93263135 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
93263170 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
93263195 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:93263194 original size:17 final size:19
Alignment explanation
Indices: 93263097--93263187 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
93263087 ATAATCTTCA
93263097 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93263116 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93263135 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93263152 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93263170 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
93263188 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:93263213 original size:22 final size:22
Alignment explanation
Indices: 93263166--93263210 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
93263156 TTGCAATCTT
*
93263166 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCCTAGA
* *
93263188 AGATATGATTTTGTAATCCTAGA
1 AGATATGA-TATGCAATCCTAGA
93263211 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
AGATATGATATGCAATCCTAGA
Found at i:93269418 original size:19 final size:20
Alignment explanation
Indices: 93269394--93269438 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
93269384 ATTAAGGTTT
*
93269394 AATTAATCATGATTAAGT-A
1 AATTAATCAAGATTAAGTAA
* *
93269413 AATTAATTAAGATTAATTAA
1 AATTAATCAAGATTAAGTAA
93269433 AATTAA
1 AATTAA
93269439 ACTAAGTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (20 bp):
AATTAATCAAGATTAAGTAA
Found at i:93271741 original size:39 final size:40
Alignment explanation
Indices: 93271696--93271806 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
93271686 CGGGGTTTAG
* * *
93271696 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
93271735 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
93271775 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
93271807 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:93271766 original size:40 final size:40
Alignment explanation
Indices: 93271719--93271869 Score: 187
Period size: 40 Copynumber: 3.7 Consensus size: 40
93271709 CTCGCACAAG
* * * * *
93271719 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
93271759 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
93271799 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
93271840 GCCTTCGAGACTTAGCCCGGATATCAGTCG
1 GCCTTCGGGACTTAGCCCGGATAT-AGTCG
93271870 AGTAACCATG
Statistics
Matches: 96, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.61
41 27 0.28
42 7 0.07
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:93273130 original size:40 final size:40
Alignment explanation
Indices: 93273036--93273180 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
93273026 TACTCGAATG
*
93273036 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
93273077 ACATCCGGACTAAGAT-TCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
93273117 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
93273157 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
93273181 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:93282587 original size:5 final size:5
Alignment explanation
Indices: 93282577--93282604 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
93282567 TGAACCTATG
93282577 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
93282605 GAACGCACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:93287030 original size:5 final size:5
Alignment explanation
Indices: 93287020--93287052 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
93287010 CCAATTTGTG
93287020 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
93287053 GAACACACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:93290898 original size:14 final size:15
Alignment explanation
Indices: 93290867--93290914 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 15
93290857 TTTAAAATAT
*
93290867 AATATATAATA-AAA
1 AATATATTATATAAA
*
93290881 AATATATT-TATAAG
1 AATATATTATATAAA
93290895 AATA-ATTATATAAA
1 AATATATTATATAAA
93290909 AATATA
1 AATATA
93290915 AAATATATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 5 0.18
14 22 0.79
15 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (15 bp):
AATATATTATATAAA
Found at i:93291280 original size:47 final size:46
Alignment explanation
Indices: 93291196--93291307 Score: 111
Period size: 47 Copynumber: 2.4 Consensus size: 46
93291186 AGGTATAAAA
* * * *
93291196 TATAAAAAAATTATAATTTATAATATGAAAGTGTATATATGTAAAAATAT
1 TATAAAATAA-TATAA-TAATAATATGAAAGTATATAT-TGTAAAAAT-G
* *
93291246 TATACAATAA-ATAATAATAATATGAAA-TAATATATTGTTAAAATG
1 TATAAAATAATATAATAATAATATGAAAGT-ATATATTGTAAAAATG
93291291 TATAAAATAATATAATA
1 TATAAAATAATATAATA
93291308 GTATAAAGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
45 9 0.17
46 15 0.28
47 17 0.32
48 4 0.08
50 8 0.15
ACGTcount: A:0.56, C:0.01, G:0.06, T:0.37
Consensus pattern (46 bp):
TATAAAATAATATAATAATAATATGAAAGTATATATTGTAAAAATG
Found at i:93291462 original size:24 final size:24
Alignment explanation
Indices: 93291339--93291457 Score: 79
Period size: 25 Copynumber: 4.9 Consensus size: 24
93291329 ATGTGATAAA
*
93291339 AATATACTATAAT-AAATAATAAGT
1 AATATAATATAATAAAAT-ATAAGT
** * *
93291363 AATGAT-ATATGTTAGAATATATATT
1 AAT-ATAATATAATAAAATATA-AGT
*
93291388 AATATAATAATAGA-AAGATATGAAGT
1 AATATAAT-ATA-ATAAAATAT-AAGT
93291414 AATATAATATAATAAAATATAAGT
1 AATATAATATAATAAAATATAAGT
93291438 AA-ATAAT-T-ATAAGAATATAA
1 AATATAATATAATAA-AATATAA
93291458 TAGTATATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
21 4 0.05
22 8 0.11
23 5 0.07
24 19 0.25
25 21 0.28
26 17 0.23
27 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.34
Consensus pattern (24 bp):
AATATAATATAATAAAATATAAGT
Found at i:93299282 original size:30 final size:30
Alignment explanation
Indices: 93299241--93299299 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
93299231 TTGGGATTGA
* *
93299241 GAAGTCTAGATATCTCGTTTAGGAGCTTGT
1 GAAGACTAGATATCGCGTTTAGGAGCTTGT
93299271 GAAGACTAGATATCGCGTTTAGGAGCTTG
1 GAAGACTAGATATCGCGTTTAGGAGCTTG
93299300 GGATTGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (30 bp):
GAAGACTAGATATCGCGTTTAGGAGCTTGT
Found at i:93299319 original size:36 final size:36
Alignment explanation
Indices: 93299230--93299335 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
93299220 CATTCAAGAT
*
93299230 CTTGGGATTGAGAAGTCTAGATATCTCGTTTAGGAG
1 CTTGGGATTGAGAAGACTAGATATCTCGTTTAGGAG
*
93299266 CTT--G--T--GAAGACTAGATATCGCGTTTAGGAG
1 CTTGGGATTGAGAAGACTAGATATCTCGTTTAGGAG
* *
93299296 CTTGGGATTGAGAAGAC-ATGATATCTTGTTCAGGAG
1 CTTGGGATTGAGAAGACTA-GATATCTCGTTTAGGAG
93299332 CTTG
1 CTTG
93299336 AAAAGATCCG
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
30 26 0.45
32 2 0.03
34 2 0.03
35 1 0.02
36 27 0.47
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.32
Consensus pattern (36 bp):
CTTGGGATTGAGAAGACTAGATATCTCGTTTAGGAG
Found at i:93317834 original size:78 final size:78
Alignment explanation
Indices: 93317724--93318095 Score: 503
Period size: 78 Copynumber: 4.8 Consensus size: 78
93317714 AAAAGTAACA
** * * ** *
93317724 GATTTGGCATCTCCATATTCGACAGAAAGCAGATCGAAGACATAGCAGATCTGACCTTCATTTAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
93317789 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
93317802 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
93317867 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * * *
93317880 AATTTGGCATCTCTATATTAGATGGGGAGTAGATTGAAGACAGAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* *
93317945 GTAGGTCCAAGAT
66 GCAGATCCAAGAT
* * * * *
93317958 GATTTGGCATCTATGTACTAGACGGGGAGCAGATAGAAGACATAACAGAT-TGGACCTTTATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
93318022 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
93318036 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGTACATCTGACCTTCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA
93318096 CGTGTTTACG
Statistics
Matches: 255, Mismatches: 37, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
77 1 0.00
78 253 0.99
79 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:93318277 original size:78 final size:78
Alignment explanation
Indices: 93318169--93318383 Score: 324
Period size: 78 Copynumber: 2.8 Consensus size: 78
93318159 AAGAAACAGC
** * * * *
93318169 TTTGGCATCTCCATATTCGACGGAGTGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAAGC
1 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGC
93318234 AGATCCAAGATGA
66 AGATCCAAGATGA
*
93318247 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGAAG
1 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAAG
93318311 CAGATCCAAGATGA
65 CAGATCCAAGATGA
* * *
93318325 TTTGGCATCTCTGTATTAGACAGGGAGCAGATCGATGACATAGCAGGTCTGACCTTCAT
1 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
93318384 GTGTTTACAT
Statistics
Matches: 124, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
77 1 0.01
78 122 0.98
79 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (78 bp):
TTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGC
AGATCCAAGATGA
Found at i:93318401 original size:287 final size:287
Alignment explanation
Indices: 93317882--93318412 Score: 839
Period size: 287 Copynumber: 1.9 Consensus size: 287
93317872 TCCAAGATAA
* * * * * * *
93317882 TTTGGCATCTCTATATTAGATGGGGAGTAGATTGAAGACAGAGCAGATCTGACCTTCATTGAAGT
1 TTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACAGAGCAAATCTGACCTTCATTGAAGC
*
93317947 AGGTCCAAGATGATTTGGCATCTATGTACTAGACGGGGAGCAGATAGAAGACATAACAGATTGGA
66 AGATCCAAGATGATTTGGCATCTATGTACTAGACGGGGAGCAGATAGAAGACATAACAGATTGGA
* *
93318012 CCTTTATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAC
131 CCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGAC
* *
93318077 ATAGTACATCTGACCTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTTTGTAC
196 ATAGCACATCTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTTTGTAC
93318142 TGTCAGGGAACAAATCAAAGAAACAGC
261 TGTCAGGGAACAAATCAAAGAAACAGC
* * *
93318169 TTTGGCATCTCCATATTCGACGGAGTGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAAGC
1 TTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACAGAGCAAATCTGACCTTCATTGAAGC
* * *
93318234 AGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGA
66 AGATCCAAGATGATTTGGCATCTATGTACTAGACGGGGAGCAGATAGAAGACATAACAGATTGGA
*
93318299 CCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGATGAC
131 CCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGAC
** * *
93318364 ATAGCAGGTCTGACCTTCATGTGTTTAC-ATCGAAGCAGATCCAAGATGA
196 ATAGCACATCTGACCTTCACGTGTTTACGCT-GAAGCAGATCCAAGATGA
93318413 CAGATTTGGC
Statistics
Matches: 220, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
286 1 0.00
287 219 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (287 bp):
TTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACAGAGCAAATCTGACCTTCATTGAAGC
AGATCCAAGATGATTTGGCATCTATGTACTAGACGGGGAGCAGATAGAAGACATAACAGATTGGA
CCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGAC
ATAGCACATCTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTTTGTAC
TGTCAGGGAACAAATCAAAGAAACAGC
Found at i:93318520 original size:44 final size:45
Alignment explanation
Indices: 93318397--93318590 Score: 266
Period size: 45 Copynumber: 4.3 Consensus size: 45
93318387 TTTACATCGA
* * * *
93318397 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTGTTAGATGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
93318442 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
93318487 AGCAGATTGAAGA-AGCAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
93318531 AGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATTAGAC-GGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
*
93318575 AGGCAGATCAAAGATA
1 A-GCAGATCGAAGATA
93318591 GTAGATATCG
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
44 45 0.34
45 88 0.66
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.24
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:93318525 original size:89 final size:89
Alignment explanation
Indices: 93318413--93318582 Score: 270
Period size: 89 Copynumber: 1.9 Consensus size: 89
93318403 TCCAAGATGA
* * **
93318413 CAGATTTGGCATCTCTGTGTTAGATGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAGATTTGGCATCTCTGTAT
93318478 TAGACGGG-GAGCAGATTGAAGAAG
66 TAGACGGGAG-GCAGATTGAAGAAG
* *
93318502 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAGATTTGGCATCTCTGTAT
93318567 TAGACGGGAGGCAGAT
66 TAGACGGGAGGCAGAT
93318583 CAAAGATAGT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
89 73 0.99
90 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.26
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAGATTTGGCATCTCTGTAT
TAGACGGGAGGCAGATTGAAGAAG
Found at i:93319019 original size:35 final size:37
Alignment explanation
Indices: 93318948--93319045 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
93318938 ATAATCTTCA
93318948 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
93318986 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
93319021 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
93319046 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:93319045 original size:17 final size:19
Alignment explanation
Indices: 93318948--93319038 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
93318938 ATAATCTTCA
93318948 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93318967 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93318986 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93319003 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93319021 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
93319039 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:93319060 original size:23 final size:22
Alignment explanation
Indices: 93318948--93319061 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
93318938 ATAATCTTCA
93318948 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
93318967 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
93318986 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
93319003 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
93319021 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
93319043 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
93319062 GCTTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:93319352 original size:17 final size:17
Alignment explanation
Indices: 93319328--93319362 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93319318 TGTTTCCCTG
*
93319328 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
93319346 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
93319363 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:93320580 original size:5 final size:5
Alignment explanation
Indices: 93320570--93320598 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
93320560 ACTTATGAGA
93320570 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
93320599 AATAAAGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:93327182 original size:19 final size:20
Alignment explanation
Indices: 93327158--93327202 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
93327148 ATTAAGGTTT
*
93327158 AATTAATCATGATTAAGT-A
1 AATTAATCAAGATTAAGTAA
* *
93327177 AATTAATTAAGATTAATTAA
1 AATTAATCAAGATTAAGTAA
93327197 AATTAA
1 AATTAA
93327203 ACTAAGTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (20 bp):
AATTAATCAAGATTAAGTAA
Found at i:93327191 original size:10 final size:10
Alignment explanation
Indices: 93327127--93327202 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 10
93327117 CTTAAATGTC
93327127 ATTAACTTAAG
1 ATTAA-TTAAG
93327138 -TTAATTAAGG
1 ATTAATTAA-G
*
93327148 ATTAAGGTTTA-
1 ATTAA--TTAAG
* *
93327159 ATTAATCATG
1 ATTAATTAAG
*
93327169 ATTAAGTAA-
1 ATTAATTAAG
93327178 ATTAATTAAG
1 ATTAATTAAG
*
93327188 ATTAATTAAA
1 ATTAATTAAG
93327198 ATTAA
1 ATTAA
93327203 ACTAAGTATC
Statistics
Matches: 50, Mismatches: 9, Indels: 13
0.69 0.12 0.18
Matches are distributed among these distances:
9 13 0.26
10 25 0.50
11 9 0.18
13 3 0.06
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.39
Consensus pattern (10 bp):
ATTAATTAAG
Found at i:93331528 original size:19 final size:19
Alignment explanation
Indices: 93331500--93331590 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
93331490 AATCATATCT
*
93331500 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
*
93331519 TCTAATATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
93331537 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
93331554 TCTAAGATTCCATATCACA
1 TCTAAGATTGCATATCATA
93331573 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
93331591 TGAAGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
17 15 0.24
18 15 0.24
19 32 0.52
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93332436 original size:207 final size:207
Alignment explanation
Indices: 93331979--93332772 Score: 1232
Period size: 207 Copynumber: 3.8 Consensus size: 207
93331969 AAATCTGCTT
* * * * *
93331979 CTTCAATTTGTTCCCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAACAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
93332044 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * * ** * ** *
93332109 GGATC-TGCTTCATTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTATCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
93332173 GGAGACGCCAAA
196 GGAGACGCCAAA
* *
93332185 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
93332250 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
93332315 GGATCTTGCTTCAGTATAAACATATGAAGTCTAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
*
93332380 GGAGACACCAAA
196 GGAGACGCCAAA
* *
93332392 CTTCGATTTGTTCTCTAACAATACAGAGATTCCAAATCATCTTAGACTTGCTTCAACGTTAACAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
93332457 GTGAAAGCCAAATCAGCTATGTCTTCCATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
93332522 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
*
93332587 GGAGATGCCAAA
196 GGAGACGCCAAA
* * * * * *
93332599 CATCGAATTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
93332664 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
93332729 GGATCTTGCTTCAGTATAAACA-ACTGAAGGCCAAATCTGCTATG
131 GGATCTTGCTTCAGTATAAACATA-TGAAGGCCAGATCTGCTATG
93332773 CTTTAACCTG
Statistics
Matches: 541, Mismatches: 45, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
206 124 0.23
207 417 0.77
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
GGAGACGCCAAA
Found at i:93332882 original size:84 final size:83
Alignment explanation
Indices: 93332778--93333048 Score: 323
Period size: 84 Copynumber: 3.2 Consensus size: 83
93332768 CTATGCTTTA
*
93332778 ACCTGTTACCCTACTTCTTAGGGGATTAAGGCGCA-TCTTCGATCTGATCCACTACTGCTTAGGG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCTTCGATCTGATCCACTACTGCTTAGGG
*
93332842 AGATAAGATCCGCAATTTT
65 AGATAAGATCTGCAATTTT
* * * * *
93332861 GACCTGTTACCCTACTGCTTAGAGGATTAGGGCGAGTCGTCATTGATCTGTTCCACTCCTGCTTA
1 -ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGATCCACTACTGCTTA
**
93332926 GGGAGATAAGATCTATAATTTT
62 GGGAGATAAGATCTGCAATTTT
* * *
93332948 AGCCTGTTACCCTACTACTTAAGGGG-TTAAGGCGAGTCTTCGATC-CACTCCACTACTACTTAG
1 A-CCTGTTACCCTACTGCTT-AGGGGATTAAGGCGAGTCTTCGATCTGA-TCCACTACTGCTTAG
*
93333011 GGAGATAAGATCTGCAAATTTA
63 GGAGATAAGATCTGC-AATTTT
93333033 ACCTGTTACCCTACTG
1 ACCTGTTACCCTACTG
93333049 GGGATTAAGG
Statistics
Matches: 158, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
83 1 0.01
84 77 0.49
85 7 0.04
86 2 0.01
87 67 0.42
88 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (83 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGATCCACTACTGCTTAGGGA
GATAAGATCTGCAATTTT
Found at i:93334020 original size:7 final size:7
Alignment explanation
Indices: 93334008--93334073 Score: 64
Period size: 7 Copynumber: 9.1 Consensus size: 7
93333998 AGCCTCTCCA
93334008 TCTTTTT
1 TCTTTTT
93334015 TCTTTTTT
1 TC-TTTTT
93334023 CTCTTTTT
1 -TCTTTTT
93334031 TCTTTTT
1 TCTTTTT
93334038 AT-TTTTT
1 -TCTTTTT
93334045 TCTCTTTT
1 TCT-TTTT
*
93334053 TCTTTTA
1 TCTTTTT
93334060 T-TTTTT
1 TCTTTTT
*
93334066 CCTTTTT
1 TCTTTTT
93334073 T
1 T
93334074 TTGAAATAGA
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
6 5 0.10
7 24 0.49
8 18 0.37
9 2 0.04
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (7 bp):
TCTTTTT
Found at i:93334029 original size:16 final size:16
Alignment explanation
Indices: 93334008--93334055 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
93333998 AGCCTCTCCA
93334008 TCTTTTTTCTTTTTTC
1 TCTTTTTTCTTTTTTC
*
93334024 TCTTTTTTC-TTTTTA
1 TCTTTTTTCTTTTTTC
93334039 T-TTTTTTCTCTTTTTC
1 TCTTTTTTCT-TTTTTC
93334055 T
1 T
93334056 TTTATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 7 0.25
15 6 0.21
16 15 0.54
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (16 bp):
TCTTTTTTCTTTTTTC
Found at i:93334034 original size:23 final size:22
Alignment explanation
Indices: 93334008--93334075 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 22
93333998 AGCCTCTCCA
93334008 TCTTTTTTCTTTTTTCTCTTTTT
1 TCTTTTTT-TTTTTTCTCTTTTT
93334031 TCTTTTTATTTTTTTCTC-TTTT
1 TCTTTTT-TTTTTTTCTCTTTTT
* * *
93334053 TCTTTTATTTTTTCCTTTTTTT
1 TCTTTTTTTTTTTTCTCTTTTT
93334075 T
1 T
93334076 GAAATAGAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
21 8 0.20
22 15 0.38
23 16 0.40
24 1 0.03
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (22 bp):
TCTTTTTTTTTTTTCTCTTTTT
Found at i:93334036 original size:22 final size:22
Alignment explanation
Indices: 93334011--93334073 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
93334001 CTCTCCATCT
*
93334011 TTTTTCTTTTTTCTCTTTTTTC
1 TTTTTATTTTTTCTCTTTTTTC
93334033 TTTTTATTTTTT-TCTCTTTTTC
1 TTTTTATTTTTTCTCT-TTTTTC
93334055 -TTTTATTTTTTC-CTTTTTT
1 TTTTTATTTTTTCTCTTTTTT
93334074 TTGAAATAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
20 5 0.13
21 16 0.42
22 17 0.45
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTTATTTTTTCTCTTTTTTC
Found at i:93334042 original size:21 final size:19
Alignment explanation
Indices: 93334018--93334073 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 19
93334008 TCTTTTTTCT
93334018 TTTTTCTCTTTTTTCTTTTTA
1 TTTTT-TCTTTTTTC-TTTTA
93334039 TTTTTTTCTCTTTTTCTTTTA
1 -TTTTTTCT-TTTTTCTTTTA
93334060 TTTTTTCCTTTTTT
1 TTTTTT-CTTTTTT
93334074 TTGAAATAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 11 0.34
21 10 0.31
22 11 0.34
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTTCTTTTTTCTTTTA
Found at i:93334058 original size:16 final size:16
Alignment explanation
Indices: 93334010--93334058 Score: 66
Period size: 15 Copynumber: 3.2 Consensus size: 16
93334000 CCTCTCCATC
93334010 TTTTTTCT-TTTTTCT
1 TTTTTTCTCTTTTTCT
* *
93334025 CTTTTT-TCTTTTTAT
1 TTTTTTCTCTTTTTCT
93334040 TTTTTTCTCTTTTTCT
1 TTTTTTCTCTTTTTCT
93334056 TTT
1 TTT
93334059 ATTTTTTCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 1 0.04
15 16 0.57
16 11 0.39
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTCTCTTTTTCT
Found at i:93334074 original size:21 final size:21
Alignment explanation
Indices: 93334011--93334074 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
93334001 CTCTCCATCT
*
93334011 TTTTTCTTTTTTCTCTTTTTTC
1 TTTTTATTTTTTCT-TTTTTTC
*
93334033 TTTTTATTTTTTTCTCTTTTTC
1 TTTTTA-TTTTTTCTTTTTTTC
93334055 -TTTTATTTTTTCCTTTTTTT
1 TTTTTATTTTTT-CTTTTTTT
93334075 TGAAATAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.16
21 12 0.32
22 11 0.30
23 8 0.22
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTATTTTTTCTTTTTTTC
Found at i:93339153 original size:18 final size:17
Alignment explanation
Indices: 93339130--93339163 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
93339120 ACTAATGTCG
93339130 AAAATTTGAAAAGATTTT
1 AAAATTTGAAAA-ATTTT
93339148 AAAATTTGAAAAATTT
1 AAAATTTGAAAAATTT
93339164 AAAGTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (17 bp):
AAAATTTGAAAAATTTT
Found at i:93339844 original size:18 final size:18
Alignment explanation
Indices: 93339808--93339925 Score: 159
Period size: 18 Copynumber: 6.6 Consensus size: 18
93339798 AATCATATCT
*
93339808 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
93339827 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
93339845 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
93339862 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
93339880 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
* *
93339897 TCTAAGATTCCATATCACA
1 TCTAAGATTGCA-ATCATA
93339916 TCTAAGATTG
1 TCTAAGATTG
93339926 TATATCATTG
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
17 31 0.35
18 32 0.36
19 25 0.28
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:93339861 original size:17 final size:17
Alignment explanation
Indices: 93339808--93339928 Score: 152
Period size: 17 Copynumber: 6.8 Consensus size: 17
93339798 AATCATATCT
93339808 TCTAAGATTGTATATCATA
1 TCTAAGATTG--TATCATA
*
93339827 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
93339845 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
*
93339862 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
93339880 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
* *
93339897 TCTAAGATTCCATATCACA
1 TCTAAGATT--GTATCATA
93339916 TCTAAGATTGTAT
1 TCTAAGATTGTAT
93339929 ATCATTGAAG
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
17 34 0.37
18 32 0.35
19 25 0.27
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:93339866 original size:35 final size:35
Alignment explanation
Indices: 93339808--93339928 Score: 197
Period size: 35 Copynumber: 3.4 Consensus size: 35
93339798 AATCATATCT
93339808 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
93339845 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
93339880 TCTAAGATTGTATCATATCTAAGATTCCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
93339916 TCTAAGATTGTAT
1 TCTAAGATTGTAT
93339929 ATCATTGAAG
Statistics
Matches: 81, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
35 53 0.65
36 18 0.22
37 10 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:93364606 original size:66 final size:66
Alignment explanation
Indices: 93364518--93364672 Score: 163
Period size: 66 Copynumber: 2.3 Consensus size: 66
93364508 TAGGAACTTC
* * * * *
93364518 AGAAGACCTAATATCTAGTTTAGGAGTTTG-GAAAGACTCA-ATATATCATTTAAGATCTTGGGA
1 AGAAGACATGATATCTAGTTTAGGAGGTTGTG-AAGACT-AGATATAGCATTTAAGAGCTTGGGA
93364581 TTG
64 TTG
* * * * *
93364584 AGAAGTC-TAGATATCTCGTTTAGGAGGTTGTGAAGACTAGATATCGCGTTTAGGAGCTTGGGAT
1 AGAAGACAT-GATATCTAGTTTAGGAGGTTGTGAAGACTAGATATAGCATTTAAGAGCTTGGGAT
93364648 TG
65 TG
*
93364650 AGAAGACATGATATCTTGTTTAG
1 AGAAGACATGATATCTAGTTTAG
93364673 AAGCTTGAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
65 2 0.03
66 70 0.95
67 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.26, T:0.33
Consensus pattern (66 bp):
AGAAGACATGATATCTAGTTTAGGAGGTTGTGAAGACTAGATATAGCATTTAAGAGCTTGGGATT
G
Found at i:93366140 original size:17 final size:17
Alignment explanation
Indices: 93366118--93366151 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
93366108 GATATGATAC
93366118 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
93366135 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
93366152 CCGGGAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:93366440 original size:22 final size:21
Alignment explanation
Indices: 93366405--93366480 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
93366395 AAAAGGTATC
* *
93366405 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
93366426 TACAAAATCATATCTTCTAATAT
1 TAC-AAATCATATC-TCTAAGAT
* *
93366449 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
93366468 TGC-AATCATATCT
1 TACAAATCATATCT
93366481 AAGATTGTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
18 6 0.14
19 10 0.23
20 1 0.02
21 3 0.07
22 15 0.34
23 9 0.20
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:93366469 original size:19 final size:19
Alignment explanation
Indices: 93366441--93366531 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
93366431 AATCATATCT
*
93366441 TCTAATATTGCATATCATA
1 TCTAAGATTGCATATCATA
93366460 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
93366478 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
93366495 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
93366514 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
93366532 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93366492 original size:35 final size:36
Alignment explanation
Indices: 93366453--93366523 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
93366443 TAATATTGCA
93366453 TATCATATCTAAGATTGCA-ATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
*
93366488 TATCATATCTAAGATTGTATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
93366524 CATATCATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:93366938 original size:45 final size:45
Alignment explanation
Indices: 93366887--93367080 Score: 228
Period size: 45 Copynumber: 4.3 Consensus size: 45
93366877 CGATATCTAC
* *
93366887 TATCTTTGATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * * * *
93366932 TATCTTTGATTTACTCCCCGTCTAATAAAGAGACGCTAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
93366977 T-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * *
93367021 TATCTCCAATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * *
93367066 CATATTGGATCTGCT
1 TATCTTCGATCTGCT
93367081 TCGATGTAAA
Statistics
Matches: 126, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
44 36 0.29
45 90 0.71
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.32
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:93367046 original size:89 final size:89
Alignment explanation
Indices: 93366895--93367064 Score: 259
Period size: 89 Copynumber: 1.9 Consensus size: 89
93366885 ACTATCTTTG
***
93366895 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTTTGATTTACTCCCCGTCTAATAA
1 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTACTCCCCGTCTAATAA
*
93366960 AGAGACGCTAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* * * *
93366984 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTACTCCCCGTCTAATAA
*
93367049 AGAGATGCCAAATCTG
66 AGAGACGCCAAATCTG
93367065 TCATATTGGA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTACTCCCCGTCTAATAA
AGAGACGCCAAATCTGCTTCTTCA
Found at i:93367223 original size:78 final size:78
Alignment explanation
Indices: 93367094--93367778 Score: 917
Period size: 78 Copynumber: 8.8 Consensus size: 78
93367084 ATGTAAACAC
* * *
93367094 ATGAAGGTCAGATCTACTATGTCTTCGATCTACTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
93367159 TGGATCTGTTTCA
66 TGGATCTGCTTCA
* **
93367172 ATGAAGGTCCA-ATCTGTTATGTCTTTAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
93367236 TTGGATCTACTTCA
65 TTGGATCTGCTTCA
* *
93367250 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
93367315 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
93367328 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
93367392 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * **
93367406 ATGAAGGTCAGATCTGCTGTGTCTTTGATCTACTCCCTTTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
93367471 TAGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * **
93367484 ATGAAGGTCAGATCTGCTATGTCTTCGATCAGCTCTCTGCCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
93367549 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * * ** *
93367562 ATGAAGGTCAGATCTTCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATTATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
93367627 TGGATCTACTTCA
66 TGGATCTGCTTCA
* * *
93367640 ATGAAGGTCCA-ATCTACTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATA
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
93367704 TTAGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * **
93367718 ATGAAGGTCAGATCTACTATTTCTTCAATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
93367779 TGTTTCTTCG
Statistics
Matches: 547, Mismatches: 54, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
77 6 0.01
78 535 0.98
79 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:93369035 original size:17 final size:17
Alignment explanation
Indices: 93368987--93369035 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
93368977 TCTATTCTAA
* * *
93368987 TTTAATTCTTTCTAAAT
1 TTTATTTCTTTTTAAAC
*
93369004 TTTATTTTATTTTTAAAC
1 TTTA-TTTCTTTTTAAAC
93369022 TTTATTTCTTTTTA
1 TTTATTTCTTTTTA
93369036 GATTATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATTTCTTTTTAAAC
Found at i:93369294 original size:17 final size:16
Alignment explanation
Indices: 93369272--93369307 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
93369262 TATTATCATA
93369272 TATTATTTTAAATTATG
1 TATTATTTTAAATT-TG
*
93369289 TATTATTTTACATTTG
1 TATTATTTTAAATTTG
93369305 TAT
1 TAT
93369308 ATACATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (16 bp):
TATTATTTTAAATTTG
Found at i:93370866 original size:17 final size:17
Alignment explanation
Indices: 93370818--93370866 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
93370808 TCTATTCTAA
* * *
93370818 TTTAATTCTTTCTAAAT
1 TTTATTTCTTTTTAAAC
*
93370835 TTTATTTTATTTTTAAAC
1 TTTA-TTTCTTTTTAAAC
93370853 TTTATTTCTTTTTA
1 TTTATTTCTTTTTA
93370867 GATTATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATTTCTTTTTAAAC
Found at i:93371121 original size:17 final size:16
Alignment explanation
Indices: 93371099--93371134 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
93371089 TATTATCATA
93371099 TATTATTTTAAATTATG
1 TATTATTTTAAATT-TG
*
93371116 TATTATTTTACATTTG
1 TATTATTTTAAATTTG
93371132 TAT
1 TAT
93371135 ATACATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (16 bp):
TATTATTTTAAATTTG
Found at i:93371529 original size:14 final size:14
Alignment explanation
Indices: 93371496--93371529 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
93371486 GTTACTACAT
*
93371496 TATTATTTTTTTAT
1 TATTATTTTTTTAA
*
93371510 TTTTATTTTTTTAA
1 TATTATTTTTTTAA
93371524 TATTAT
1 TATTAT
93371530 CACATTAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TATTATTTTTTTAA
Found at i:93372854 original size:220 final size:220
Alignment explanation
Indices: 93372472--93372938 Score: 745
Period size: 220 Copynumber: 2.1 Consensus size: 220
93372462 TGGTTTCGAC
*
93372472 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGTAAGGATGCCAAAT
1 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAAT
* *
93372537 CATCTTGGATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGTTATGTCTTCGATCTGCTC
66 CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTC
* * *
93372602 TCCGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCA
131 TCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCA
*
93372667 AATAATCTTAGATCTGCTTCAGCGT
196 AATAATCTTAGATCCGCTTCAGCGT
** *
93372692 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGTTCCTTGTAAACGCAAGGATGCCCAAT
1 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAAT
*
93372757 CATCTTGAATCTACTTCTATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTC
66 CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTC
* * **
93372822 TCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTTTGACAATACAGATATGTTA
131 TCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCA
* * *
93372887 AATCATCTTGGATCCGCTTCAGTGT
196 AATAATCTTAGATCCGCTTCAGCGT
* * *
93372912 AAACACCTGAAGGTCAAATCTGCTATG
1 AAACACGTGAAAGCCAAATCTGCTATG
93372939 CTTTAGCCTG
Statistics
Matches: 226, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
220 226 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (220 bp):
AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAAT
CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTC
TCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCA
AATAATCTTAGATCCGCTTCAGCGT
Found at i:93375015 original size:49 final size:49
Alignment explanation
Indices: 93374941--93375185 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
93374931 TAGTGGAAGC
* * * *
93374941 TATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
93374990 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
93375040 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* *** *
93375091 TATCAGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
93375140 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
93375186 TCACAATAGC
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 49 0.29
51 37 0.22
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:93375177 original size:100 final size:99
Alignment explanation
Indices: 93374940--93375185 Score: 332
Period size: 100 Copynumber: 2.5 Consensus size: 99
93374930 GTAGTGGAAG
* * * * * * *
93374940 CTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATA
*
93375005 GTAGCCTGCACTTAGTACTACACACGTGACCTAA
66 GTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * **
93375039 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGTA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACA
*
93375104 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
64 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
*
93375139 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
93375186 TCACAATAGC
Statistics
Matches: 127, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
99 39 0.31
100 47 0.37
101 41 0.32
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATA
GTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:93375867 original size:30 final size:30
Alignment explanation
Indices: 93375833--93375892 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
93375823 CTTTAATACG
*
93375833 AACTTTTGAAAAATTAC-CATTTTTCCCCTA
1 AACTTTTGAAAAATTACAC-TTTTGCCCCTA
* *
93375863 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGAAAAATTACACTTTTGCCCCTA
93375893 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTGAAAAATTACACTTTTGCCCCTA
Found at i:93377969 original size:15 final size:15
Alignment explanation
Indices: 93377940--93377978 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
93377930 AACAAAGAAG
93377940 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
93377956 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
93377971 CCATGATA
1 CCAAGATA
93377979 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:93380808 original size:49 final size:49
Alignment explanation
Indices: 93380736--93380960 Score: 306
Period size: 49 Copynumber: 4.5 Consensus size: 49
93380726 CTGGTATGCA
* *
93380736 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* ** *
93380785 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * *
93380835 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* *
93380886 TAGTAGCCTCCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
93380935 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
93380961 AGTGACCTCA
Statistics
Matches: 152, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 67 0.44
50 48 0.32
51 37 0.24
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:93380958 original size:100 final size:99
Alignment explanation
Indices: 93380736--93380967 Score: 322
Period size: 100 Copynumber: 2.3 Consensus size: 99
93380726 CTGGTATGCA
* * * * *
93380736 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACCAATTATCAGGTACACATAGTAGCCTCCACTTA
*
93380801 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * *
93380835 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTCCACT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGA-CCAA-TTATCAGGTACACATAGTAGCCTCCACT
* ** *
93380900 TAGTACTACACATGCGACC-AATTATCTGGTACACG
64 TAGTACTACACACGCGACCTAACCATCTGATACACG
93380935 TAGTAGCCTGCACTTAGTACTACACAAGTGACC
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACC
93380968 TCACAATAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.26
100 46 0.39
101 41 0.35
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACAAGTGACCAATTATCAGGTACACATAGTAGCCTCCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:93381650 original size:30 final size:30
Alignment explanation
Indices: 93381616--93381675 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
93381606 CTTTAATATG
93381616 AACTTTTGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTTGCAAAATTACAC-TTTTGCCCCTA
*
93381646 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
93381676 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTTGCAAAATTACACTTTTGCCCCTA
Found at i:93393209 original size:17 final size:18
Alignment explanation
Indices: 93393187--93393222 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
93393177 GATATGATAC
*
93393187 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
93393204 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
93393222 T
1 T
93393223 CCAGGAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:93393520 original size:23 final size:22
Alignment explanation
Indices: 93393477--93393534 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
93393467 AAAAGGTATC
* *
93393477 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
93393498 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
93393521 TGCATATCATATCT
1 TACAAATCATATCT
93393535 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:93393537 original size:19 final size:19
Alignment explanation
Indices: 93393513--93393603 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
93393503 AATCATATCT
93393513 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
93393532 TCTAAGATTGCA-AGCATA
1 TCTAAGATTGCATATCATA
93393550 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
93393567 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
93393586 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
93393604 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 15 0.22
19 37 0.55
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93393569 original size:35 final size:37
Alignment explanation
Indices: 93393513--93393603 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
93393503 AATCATATCT
93393513 TCTAAGATTGCATATCATATCTAAGATTGCA-AGCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATAGCATA
*
93393550 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCATAGCATA
93393586 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
93393604 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATAGCATA
Found at i:93393760 original size:21 final size:20
Alignment explanation
Indices: 93393722--93393761 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
93393712 TTGGACTTCG
**
93393722 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
93393742 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
93393762 TCTGGGCTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:93409327 original size:3 final size:3
Alignment explanation
Indices: 93409319--93409348 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
93409309 TTTAATTCTT
*
93409319 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
93409349 CTCTTATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:93409880 original size:12 final size:12
Alignment explanation
Indices: 93409863--93409890 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
93409853 TGGCCCCTTG
93409863 GCATGGGTCGGT
1 GCATGGGTCGGT
93409875 GCATGGGTCGGT
1 GCATGGGTCGGT
93409887 GCAT
1 GCAT
93409891 CGACTCGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.11, C:0.18, G:0.46, T:0.25
Consensus pattern (12 bp):
GCATGGGTCGGT
Found at i:93410966 original size:17 final size:17
Alignment explanation
Indices: 93410920--93410966 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
93410910 TTTGAGTCCA
*
93410920 TTTA-TTTTACTTTGTT
1 TTTATTTTTATTTTGTT
* **
93410936 TTTCTTTTCCTTTTGTT
1 TTTATTTTTATTTTGTT
93410953 TTTATTTTTATTTT
1 TTTATTTTTATTTT
93410967 AATTTCATGT
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (17 bp):
TTTATTTTTATTTTGTT
Found at i:93416493 original size:62 final size:62
Alignment explanation
Indices: 93416415--93416627 Score: 223
Period size: 62 Copynumber: 3.4 Consensus size: 62
93416405 TACGACCAAA
* *
93416415 GACACAGACGTGTGCCCAGGCCATGTAACTCACTGTTTGGGGTATAAAACCACACAGCCAGG
1 GACACAGACGTGTGCCCAGGCCGTGTAACTCACTGTTTAGGGTATAAAACCACACAGCCAGG
* * * * **
93416477 GACACAGTCGTATGCCCAGGTCGTGTAACTCACTTTTTAGGGTATAAAACCACATGGCCAGG
1 GACACAGACGTGTGCCCAGGCCGTGTAACTCACTGTTTAGGGTATAAAACCACACAGCCAGG
* * * * ***
93416539 GACACGGGCATGTGCCTAGGCCGTGTAACTCACTGTTTATACT-TAAAAACCACAC-GACCAAGG
1 GACACAGACGTGTGCCCAGGCCGTGTAACTCACTGTTTAGGGTAT-AAAACCACACAG-CC-AGG
* * *
93416602 CACACAGGCGTGTGCCCAGGCTGTGT
1 GACACAGACGTGTGCCCAGGCCGTGT
93416628 GGCAGGATGT
Statistics
Matches: 124, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
61 2 0.02
62 98 0.79
63 24 0.19
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (62 bp):
GACACAGACGTGTGCCCAGGCCGTGTAACTCACTGTTTAGGGTATAAAACCACACAGCCAGG
Found at i:93418739 original size:30 final size:31
Alignment explanation
Indices: 93418705--93418775 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
93418695 TTAGTTTATG
93418705 ATAAAATTTAAATTATTATTT-TT-TATTAAA
1 ATAAAATTTAAATTATT-TTTATTATATTAAA
*
93418735 ATAAAATTTATATTATTTTTATTACTATTAAA
1 ATAAAATTTAAATTATTTTTATTA-TATTAAA
93418767 ATCAAAATT
1 AT-AAAATT
93418776 CTTATTAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
29 3 0.08
30 18 0.50
32 9 0.25
33 6 0.17
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (31 bp):
ATAAAATTTAAATTATTTTTATTATATTAAA
Found at i:93420599 original size:37 final size:37
Alignment explanation
Indices: 93420549--93420627 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
93420539 TTATTACGAA
* * *
93420549 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
93420586 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
93420623 GTCTT
1 GTCTT
93420628 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:93420824 original size:47 final size:47
Alignment explanation
Indices: 93420746--93420968 Score: 331
Period size: 47 Copynumber: 4.7 Consensus size: 47
93420736 CCCTTCGGGA
* * * * * *
93420746 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93420793 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93420840 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93420887 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93420934 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
93420969 AGAATCCTAA
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 161 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93422867 original size:56 final size:56
Alignment explanation
Indices: 93422800--93422919 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
93422790 TATTAGTTTA
93422800 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
93422856 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
93422912 TTGCCCAT
1 TTGCCCAT
93422920 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:93423584 original size:35 final size:35
Alignment explanation
Indices: 93423538--93423608 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
93423528 TTTTCTCTTT
*
93423538 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
93423573 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
93423608 T
1 T
93423609 GGGCACGACG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Found at i:93431078 original size:13 final size:13
Alignment explanation
Indices: 93431040--93431079 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
93431030 AAATAATTCG
**
93431040 AAAAAAAAAAGAA
1 AAAAAAAAAAGTT
93431053 AAAAAAGAAAAGTT
1 AAAAAA-AAAAGTT
93431067 AAAAAAAAAAGTT
1 AAAAAAAAAAGTT
93431080 TGATGATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (13 bp):
AAAAAAAAAAGTT
Found at i:93431858 original size:35 final size:35
Alignment explanation
Indices: 93431804--93431870 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
93431794 TTTTTTCTTT
*
93431804 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
*
93431839 TTATTCTGTCGCGGCTGGAGTCGTGGGCACGA
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGA
93431871 TGCTGGGCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.13, C:0.22, G:0.36, T:0.28
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Done.