Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 288 of 356
Found at i:93709483 original size:93 final size:93
Alignment explanation
Indices: 93709324--93709493 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
93709314 GGATGGTTGA
* * *
93709324 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
93709389 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
93709417 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
93709482 TGAGTCTGAGTT
66 TGAGTCCGAGTT
93709494 CACTTAGGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:93709498 original size:46 final size:46
Alignment explanation
Indices: 93709328--93709499 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
93709318 GGTTGAGCAT
* * * *
93709328 CCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
93709374 CCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---GC
93709419 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
93709467 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93709500 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
45 2 0.02
46 55 0.52
47 25 0.24
48 3 0.03
50 4 0.04
51 7 0.07
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:93714693 original size:6 final size:6
Alignment explanation
Indices: 93714684--93714738 Score: 83
Period size: 6 Copynumber: 8.8 Consensus size: 6
93714674 AATAAAATTG
*
93714684 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA ATAATAA ATAAAAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A-AATAA A-AATAA
93714734 AAATA
1 AAATA
93714739 GGAGGATTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
6 34 0.74
7 12 0.26
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:93720121 original size:13 final size:13
Alignment explanation
Indices: 93720103--93720127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93720093 GGTTTATTTA
93720103 TTAAACTAATTAT
1 TTAAACTAATTAT
93720116 TTAAACTAATTA
1 TTAAACTAATTA
93720128 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:93724741 original size:6 final size:6
Alignment explanation
Indices: 93724730--93724782 Score: 72
Period size: 6 Copynumber: 8.7 Consensus size: 6
93724720 TTTGAGTCCC
*
93724730 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA- TTTTAT TTTCAGT TATTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T T-TTTAT
93724779 TTTT
1 TTTT
93724783 GAAGACTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 5 0.12
6 30 0.71
7 4 0.10
8 3 0.07
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:93726632 original size:30 final size:30
Alignment explanation
Indices: 93726587--93726643 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
93726577 TAGGCACTTC
*
93726587 CACACGGGTAAACCACACGCCCGTGTGAGG
1 CACAAGGGTAAACCACACGCCCGTGTGAGG
* * *
93726617 CACAAGGGTAGACCACATGCTCGTGTG
1 CACAAGGGTAAACCACACGCCCGTGTG
93726644 TCATGGCCAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.14
Consensus pattern (30 bp):
CACAAGGGTAAACCACACGCCCGTGTGAGG
Found at i:93730375 original size:82 final size:82
Alignment explanation
Indices: 93730241--93730401 Score: 304
Period size: 82 Copynumber: 2.0 Consensus size: 82
93730231 ATTAGCCATG
*
93730241 AAAATCCCAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAAGACCAG
1 AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAAGACCAG
93730306 TAATAGTTCAAATCGAA
66 TAATAGTTCAAATCGAA
*
93730323 AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAATACCAG
1 AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAAGACCAG
93730388 TAATAGTTCAAATC
66 TAATAGTTCAAATC
93730402 AAACTCATAT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.27
Consensus pattern (82 bp):
AAAATCACAAGATCCAACACACATGGTTGAATTCATCAAATAATCATATTTCATGTAAAGACCAG
TAATAGTTCAAATCGAA
Found at i:93732036 original size:30 final size:30
Alignment explanation
Indices: 93732002--93732092 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
93731992 TTCCCGAGCC
*
93732002 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAATTGTAAATATGCAAAAGTT
93732032 TAGGGGCAAAATTGTAAATATGCAAAAGTT
1 TAGGGGCAAAATTGTAAATATGCAAAAGTT
* * * *
93732062 TATGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAATTGTAAATATGCAAAAGTT
93732092 T
1 T
93732093 GAGTTAAGGA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAAATATGCAAAAGTT
Found at i:93732903 original size:64 final size:64
Alignment explanation
Indices: 93732822--93733005 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
93732812 AGACATTATG
* *
93732822 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
93732886 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
93732951 AA
63 AA
* * *
93732953 AT-TGGCTAGGTCACATGGGTGATACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
93733006 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 20 0.20
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:93747989 original size:9 final size:9
Alignment explanation
Indices: 93747975--93747999 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
93747965 TTAATAGATA
93747975 CTCAAAAGG
1 CTCAAAAGG
93747984 CTCAAAAGG
1 CTCAAAAGG
93747993 CTCAAAA
1 CTCAAAA
93748000 ATCTCACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.24, G:0.16, T:0.12
Consensus pattern (9 bp):
CTCAAAAGG
Found at i:93763255 original size:39 final size:39
Alignment explanation
Indices: 93763015--93763245 Score: 336
Period size: 39 Copynumber: 5.9 Consensus size: 39
93763005 ATTACCAGCA
* *
93763015 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
93763054 CCAGCATGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
93763093 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * * *
93763132 TCAGCACAAAGCCTGTGGGAGTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
93763171 CCAGCACGAAGCCTGCGGGACTTTAGCCCGAAAACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
93763210 CCAGCACGAAGCCTGCGGGACTCTAACCTGGATACA
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACA
93763246 ATCTCAGCAC
Statistics
Matches: 169, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 169 1.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:93768685 original size:39 final size:39
Alignment explanation
Indices: 93768631--93768783 Score: 227
Period size: 39 Copynumber: 3.9 Consensus size: 39
93768621 ATTACCAGCA
*
93768631 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACT-CATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGA-TACATTT
93768670 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
93768709 CTAGCACGAAGCCTGCGAGACTTTATCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
93768748 CTAGCACGAAGCCTGCGGGACTCTAACCCGGATACA
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACA
93768784 ATCTCAGCAC
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 105 0.99
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:93771457 original size:3 final size:3
Alignment explanation
Indices: 93771451--93771481 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
93771441 AATAATAATA
93771451 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
93771482 AGAAGTAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:93778735 original size:21 final size:22
Alignment explanation
Indices: 93778696--93778736 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
93778686 TCAAATTGGT
93778696 CACACGGGCGTGTTGCCCCTTC
1 CACACGGGCGTGTTGCCCCTTC
93778718 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
93778737 ATGTCAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTTC
Found at i:93795114 original size:39 final size:39
Alignment explanation
Indices: 93795060--93795212 Score: 227
Period size: 39 Copynumber: 3.9 Consensus size: 39
93795050 ATTACCAGCA
*
93795060 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACT-CATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGA-TACATTT
93795099 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
93795138 CTAGCACGAAGCCTGCGAGACTTTATCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
93795177 CTAGCACGAAGCCTGCGGGACTCTAACCCGGATACA
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACA
93795213 ATCTCAGCAC
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 105 0.99
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:93797896 original size:3 final size:3
Alignment explanation
Indices: 93797890--93797920 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
93797880 AATAATAATA
93797890 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
93797921 AGAAGTAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:93805176 original size:21 final size:22
Alignment explanation
Indices: 93805137--93805177 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
93805127 TCAAATTGGT
93805137 CACACGGGCGTGTTGCCCCTTC
1 CACACGGGCGTGTTGCCCCTTC
93805159 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
93805178 ATGTCAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTTC
Found at i:93826078 original size:44 final size:44
Alignment explanation
Indices: 93825937--93826094 Score: 139
Period size: 44 Copynumber: 3.7 Consensus size: 44
93825927 CACTCGTACA
* * * * *
93825937 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATC-AAATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCTCAA-ATCG
* * *
93825980 ATGCCACTGTCCCAGAA-AGGGTCGTACACG-AAA--TCAAATACG
1 ATGCCAATGTCCCA-AACATGGTCTTACACGTAAATCTCAAAT-CG
** *
93826022 ATATCGATGTCCCAAACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCTCAAATCG
*
93826066 ATGCCAATGTCCCAGACATGGTCTTACAC
1 ATGCCAATGTCCCAAACATGGTCTTACAC
93826095 AAAATCACAT
Statistics
Matches: 89, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
41 4 0.04
42 25 0.28
43 26 0.29
44 28 0.31
45 6 0.07
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCTCAAATCG
Found at i:93826094 original size:86 final size:85
Alignment explanation
Indices: 93825945--93826101 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 85
93825935 CAATGCCAAC
* * * * *
93825945 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAAAGGGTCGTACACG
1 GTCCCAAACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGAAAGGGTCGTACACA
93826010 AAATCAAATACGATATCGAT
66 AAATCAAATACGATATCGAT
* * * *
93826030 GTCCCAAACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAATGTCCCAGACATGGTCTTACA
1 GTCCCAAACATGGTCTTACACGT-AATC-AAATATCGATGCCAATGTCCCAGAAAGGGTCGTACA
93826094 CAAAATCA
64 CAAAATCA
93826102 CATATCGGAA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 20 0.33
86 39 0.64
87 2 0.03
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
GTCCCAAACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGAAAGGGTCGTACACA
AAATCAAATACGATATCGAT
Found at i:93826120 original size:44 final size:44
Alignment explanation
Indices: 93825937--93826108 Score: 133
Period size: 43 Copynumber: 4.0 Consensus size: 44
93825927 CACTCGTACA
* * * * *
93825937 ATGCCAACGTCCCAGACGTGGTCTTACATG-TAATCA-AATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAAATCACAA-ATCG
* * *
93825980 ATGCCACTGTCCCAGAA-AGGGTCGTACACG-AAAT--CAAATACG
1 ATGCCAATGTCCCA-AACATGGTCTTACACGAAAATCACAAAT-CG
** * * *
93826022 ATATCGATGTCCCAAACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAAATCACAAATCG
* *
93826066 ATGCCAATGTCCCAGACATGGTCTTACAC-AAAATCACATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAAATCACAAATCG
93826109 GAATCCTATG
Statistics
Matches: 101, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
41 4 0.04
42 25 0.25
43 39 0.39
44 28 0.28
45 5 0.05
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGAAAATCACAAATCG
Found at i:93842393 original size:67 final size:67
Alignment explanation
Indices: 93842285--93842417 Score: 266
Period size: 67 Copynumber: 2.0 Consensus size: 67
93842275 GACCAATATC
93842285 TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
1 TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
93842350 AA
66 AA
93842352 TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
1 TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
93842417 A
66 A
93842418 CCTGAATTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (67 bp):
TCAGTCGGTTCTTGATCCAACCAATCTGGCCTAGTTTAGATGACATTGAATTTTTATATTTAAAA
AA
Found at i:93842712 original size:19 final size:20
Alignment explanation
Indices: 93842674--93842713 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
93842664 ACCGATTTTT
**
93842674 ATAATTTTTTTTATTTTTGA
1 ATAATTTTTTTTATCATTGA
93842694 ATAATTTTTTTTA-CATTGA
1 ATAATTTTTTTTATCATTGA
93842713 A
1 A
93842714 CCGATCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (20 bp):
ATAATTTTTTTTATCATTGA
Found at i:93851665 original size:9 final size:9
Alignment explanation
Indices: 93851659--93851692 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
93851649 CATAATTTGA
93851659 TTTATTTA-
1 TTTATTTAC
*
93851667 TTTATTTAT
1 TTTATTTAC
93851676 TTTATTTAC
1 TTTATTTAC
93851685 TTTATTTA
1 TTTATTTA
93851693 ATTAATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTATTTAC
Found at i:93851667 original size:4 final size:4
Alignment explanation
Indices: 93851653--93851692 Score: 53
Period size: 4 Copynumber: 9.2 Consensus size: 4
93851643 AATTTTCATA
93851653 ATTT GATTT ATTT ATTT ATTT ATTTT ATTT ACTTT ATTT A
1 ATTT -ATTT ATTT ATTT ATTT A-TTT ATTT A-TTT ATTT A
93851693 ATTAATATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 21 0.64
5 12 0.36
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:93851692 original size:13 final size:12
Alignment explanation
Indices: 93851653--93851692 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 12
93851643 AATTTTCATA
93851653 ATTTGATTTATTT
1 ATTT-ATTTATTT
93851666 ATTTATTTATTTT
1 ATTTATTTA-TTT
93851679 ATTTACTTTATTT
1 ATTTA-TTTATTT
93851692 A
1 A
93851693 ATTAATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.20
13 16 0.64
14 4 0.16
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (12 bp):
ATTTATTTATTT
Found at i:93857979 original size:22 final size:23
Alignment explanation
Indices: 93857933--93857985 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
93857923 TAGGTTTAGT
*
93857933 GTTTTGGGTCAATTGGGTTAGGG
1 GTTTTGGGTAAATTGGGTTAGGG
93857956 GTTTTGGGTAAATTGGG-TAGGG
1 GTTTTGGGTAAATTGGGTTAGGG
93857978 GTTTTGGG
1 GTTTTGGG
93857986 CCCAAAATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 13 0.45
23 16 0.55
ACGTcount: A:0.13, C:0.02, G:0.45, T:0.40
Consensus pattern (23 bp):
GTTTTGGGTAAATTGGGTTAGGG
Found at i:93858021 original size:10 final size:10
Alignment explanation
Indices: 93858006--93858051 Score: 76
Period size: 10 Copynumber: 4.6 Consensus size: 10
93857996 GGCTTGTACA
93858006 ATCTTTATTT
1 ATCTTTATTT
93858016 ATCTTTATTT
1 ATCTTTATTT
93858026 ATCTTTATTT
1 ATCTTTATTT
93858036 AT-TTATATTT
1 ATCTT-TATTT
93858046 ATCTTT
1 ATCTTT
93858052 TAGAATTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.70
Consensus pattern (10 bp):
ATCTTTATTT
Found at i:93860868 original size:31 final size:31
Alignment explanation
Indices: 93860825--93860908 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
93860815 TTATTCTTGA
93860825 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* *
93860855 TATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
93860886 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
93860909 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:93860979 original size:42 final size:42
Alignment explanation
Indices: 93860932--93861023 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
93860922 TGGCTCTTAG
* *
93860932 GCCCATTTTAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
93860974 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
93861016 GCCCATTT
1 GCCCATTT
93861024 GGGAAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:93861185 original size:24 final size:23
Alignment explanation
Indices: 93861144--93861215 Score: 65
Period size: 25 Copynumber: 3.0 Consensus size: 23
93861134 GCTTTATCAT
**
93861144 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCAAAGCC-CTTTTA
*
93861169 ATAACTGAGGCAAAGCCCTTTCTG
1 ATAACTGAGGCAAAGCCCTTT-TA
93861193 ATAAACT-AGGGCAAAGCCCTTTT
1 AT-AACTGA-GGCAAAGCCCTTTT
93861216 CGGTAAACTG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 4 0.10
24 14 0.34
25 23 0.56
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (23 bp):
ATAACTGAGGCAAAGCCCTTTTA
Found at i:93861199 original size:25 final size:25
Alignment explanation
Indices: 93861171--93861240 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
93861161 CTCTTTTAAT
93861171 AACTGAGGCAAAGCCC-TTTCTGATA
1 AACTGAGGCAAAGCCCTTTTC-GATA
*
93861196 AACT-AGGGCAAAGCCCTTTTCGGTA
1 AACTGA-GGCAAAGCCCTTTTCGATA
* *
93861221 AACTGGGGCAGAGCCCTTTT
1 AACTGAGGCAAAGCCCTTTT
93861241 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
24 1 0.03
25 34 0.87
26 4 0.10
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AACTGAGGCAAAGCCCTTTTCGATA
Found at i:93862080 original size:27 final size:27
Alignment explanation
Indices: 93862050--93862111 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
93862040 GGGCATATTC
93862050 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
93862077 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
93862104 GTCTTTTT
1 GTCATTTT
93862112 TACTTATTAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:93862199 original size:27 final size:27
Alignment explanation
Indices: 93862169--93862254 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
93862159 GTAAATCTAC
*
93862169 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
*
93862196 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
93862222 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
93862252 AAA
1 AAA
93862255 TTAGGGGTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 23 0.46
28 6 0.12
29 19 0.38
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:93862272 original size:27 final size:27
Alignment explanation
Indices: 93862232--93862382 Score: 180
Period size: 27 Copynumber: 5.6 Consensus size: 27
93862222 AGAAAGTCAA
** *
93862232 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
93862259 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
93862285 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * *
93862313 TGGTATTTCGGTAATTTTACAAGCTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
93862340 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
93862367 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
93862383 CTATCCTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.03
27 103 0.96
28 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:93862318 original size:54 final size:54
Alignment explanation
Indices: 93862257--93862415 Score: 187
Period size: 54 Copynumber: 2.9 Consensus size: 54
93862247 TTTGTAAATT
*
93862257 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACC
* * * * * *
93862311 AGTGGTATTTCGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACC
* ** *
93862365 AGGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
93862416 TCGAGGGTAA
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 83 0.95
55 4 0.05
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACC
Found at i:93862349 original size:81 final size:81
Alignment explanation
Indices: 93862233--93862382 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
93862223 GAAAGTCAAG
* ** * *
93862233 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
93862297 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
* *
93862314 GGTATTTCGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
93862379 AATT
66 AATT
93862383 CTATCCTACA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 59 0.97
82 2 0.03
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:93862399 original size:81 final size:81
Alignment explanation
Indices: 93862232--93862415 Score: 212
Period size: 81 Copynumber: 2.3 Consensus size: 81
93862222 AGAAAGTCAA
* ** * *
93862232 GGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
93862297 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* * * *
93862313 TGGTATTTCGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTG
1 GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCG
**
93862377 GTAA-TTCTATCCTA-CAG
65 GTAATTTC-A-CAAACCAG
*
93862394 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
93862416 TCGAGGGTAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 3 0.03
81 80 0.92
82 4 0.05
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
TAATTTCACAAACCAG
Found at i:93862422 original size:27 final size:27
Alignment explanation
Indices: 93862257--93862422 Score: 124
Period size: 27 Copynumber: 6.1 Consensus size: 27
93862247 TTTGTAAATT
* * *
93862257 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTCGGTAATTTCAC-AATCG
* *
93862285 A-GGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTTCGGTAATTTCACAATCG
* * * *
93862311 AGTGGTATTTCGGTAATTTTACAAGCT
1 AGGGGTATTTCGGTAATTTCACAATCG
* * * *
93862338 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTCACAATCG
* *
93862365 AGGGGTATTTTGGTAA-TTCTATC-CTAC-
1 AGGGGTATTTCGGTAATTTC-A-CAAT-CG
*
93862392 AGGGGTATTTCAGTAATTTCACAATCG
1 AGGGGTATTTCGGTAATTTCACAATCG
93862419 AGGG
1 AGGG
93862423 TAAAACGGTA
Statistics
Matches: 113, Mismatches: 18, Indels: 15
0.77 0.12 0.10
Matches are distributed among these distances:
26 7 0.06
27 100 0.88
28 6 0.05
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTCACAATCG
Found at i:93862454 original size:27 final size:27
Alignment explanation
Indices: 93862414--93862611 Score: 209
Period size: 27 Copynumber: 7.3 Consensus size: 27
93862404 GTAATTTCAC
*
93862414 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * * * *
93862441 AA-CTAAAGGTAAAATGATAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* ** *
93862468 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
93862495 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
93862522 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
93862549 AATCGATGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
93862576 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
93862603 AATCGAGGG
1 AATCGAGGG
93862612 CATTTCAGTA
Statistics
Matches: 144, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:93862522 original size:81 final size:81
Alignment explanation
Indices: 93862414--93862600 Score: 257
Period size: 81 Copynumber: 2.3 Consensus size: 81
93862404 GTAATTTCAC
* * *
93862414 AATCGAGGGTAAAACGGTAATTTTATAAACTAAAGGTAAAATGATAATTTTGTAAATCAAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAACTAAAGGTAAAACGATAATTTTGTAAATCAAGGGTA
* *
93862479 AAATAGTAATTCTGTA
66 AAACAGTAATTCTATA
* * * * * * *
93862495 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGATGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAACTAAAGGTAAAACGATAATTTTGTAAATCAAGGGTA
*
93862560 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
93862576 AATCGAGGGTAAAATGGTAATTCTA
1 AATCGAGGGTAAAATGGTAATTCTA
93862601 CAAATCGAGG
Statistics
Matches: 93, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACTAAAGGTAAAACGATAATTTTGTAAATCAAGGGTA
AAACAGTAATTCTATA
Found at i:93862623 original size:81 final size:81
Alignment explanation
Indices: 93862458--93862631 Score: 222
Period size: 81 Copynumber: 2.1 Consensus size: 81
93862448 GGTAAAATGA
* * *
93862458 TAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
* * *
93862523 ATTGAGGGTAAAACGG
66 ATCGAGGGCAAAACAG
* * * *
93862539 TAATTTTGTAAATCGATGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
1 TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
***
93862604 ATCGAGGGCATTTCAG
66 ATCGAGGGCAAAACAG
*
93862620 TAATTTGGTAAA
1 TAATTTTGTAAA
93862632 CTAAAGTATT
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
TAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAA
ATCGAGGGCAAAACAG
Found at i:93867726 original size:43 final size:43
Alignment explanation
Indices: 93867572--93867719 Score: 269
Period size: 43 Copynumber: 3.4 Consensus size: 43
93867562 CCGGCATTAC
93867572 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
* *
93867615 GCCTGCTAGGCACGAAAGCCCGAATACACATCATTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
*
93867658 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
93867701 GCCTGCTAGGCACGAAGGC
1 GCCTGCTAGGCACGAAGGC
93867720 TTGAATATAA
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:93867772 original size:38 final size:38
Alignment explanation
Indices: 93867724--93867901 Score: 272
Period size: 38 Copynumber: 4.7 Consensus size: 38
93867714 GAAGGCTTGA
* * *
93867724 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
93867762 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
93867800 ATATATTA-CAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
93867837 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
93867875 ATATAATT-CCAGCA-TATAGCCTGCGGG
1 ATAT-ATTACCAGCACGA-AGCCTGCGGG
93867902 TCTTTAGGCC
Statistics
Matches: 131, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
37 37 0.28
38 91 0.69
39 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:93867823 original size:75 final size:75
Alignment explanation
Indices: 93867724--93867901 Score: 277
Period size: 75 Copynumber: 2.3 Consensus size: 75
93867714 GAAGGCTTGA
* *
93867724 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGG
1 ATATATTA-CAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGG
93867789 ATTTAACCCGG
65 ATTTAACCCGG
* *
93867800 ATATATTACAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGA
1 ATATATTACAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGGA
93867865 TTTAACCCGG
66 TTTAACCCGG
*
93867875 ATATAATTCCAGCA-TATAGCCTGCGGG
1 ATAT-ATTACAGCACTA-AGCCTGCGGG
93867902 TCTTTAGGCC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
75 69 0.73
76 25 0.27
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (75 bp):
ATATATTACAGCACTAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGGA
TTTAACCCGG
Found at i:93872085 original size:17 final size:18
Alignment explanation
Indices: 93872063--93872100 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
93872053 AAAGAATTTT
*
93872063 AATTTT-AATTTTTTTAA
1 AATTTTGAATTTTTATAA
93872080 AATTTTGGAATTTTTATAA
1 AATTTT-GAATTTTTATAA
93872099 AA
1 AA
93872101 AAATGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
AATTTTGAATTTTTATAA
Found at i:93872120 original size:20 final size:20
Alignment explanation
Indices: 93872097--93872140 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
93872087 GAATTTTTAT
93872097 AAAAAAATGAAAAAGAATAG
1 AAAAAAATGAAAAAGAATAG
* * * *
93872117 AAAAATATTAAACATAATAG
1 AAAAAAATGAAAAAGAATAG
93872137 AAAA
1 AAAA
93872141 TAATTTAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (20 bp):
AAAAAAATGAAAAAGAATAG
Found at i:93873012 original size:27 final size:28
Alignment explanation
Indices: 93872973--93873043 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
93872963 TTTTTTATGT
*
93872973 TTTTTAATGATTTTTTAAAAAAA-TATTC
1 TTTTTAA-AATTTTTTAAAAAAATTATTC
*
93873001 TTTTTAAAA-TTTTTAAAAAAATTATTT
1 TTTTTAAAATTTTTTAAAAAAATTATTC
* *
93873028 TTTTTAGAATTGTTTA
1 TTTTTAAAATTTTTTA
93873044 TGTTTCTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 12 0.32
27 13 0.35
28 12 0.32
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (28 bp):
TTTTTAAAATTTTTTAAAAAAATTATTC
Found at i:93873020 original size:26 final size:27
Alignment explanation
Indices: 93872984--93873043 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
93872974 TTTTAATGAT
93872984 TTTTTAAAAAAA-TATTCTTTTTAAAA
1 TTTTTAAAAAAATTATTCTTTTTAAAA
* *
93873010 TTTTTAAAAAAATTATTTTTTTTAGAA
1 TTTTTAAAAAAATTATTCTTTTTAAAA
93873037 TTGTTTA
1 TT-TTTA
93873044 TGTTTCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 12 0.40
27 14 0.47
28 4 0.13
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (27 bp):
TTTTTAAAAAAATTATTCTTTTTAAAA
Found at i:93873679 original size:21 final size:21
Alignment explanation
Indices: 93873641--93873680 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
93873631 ATAAACTTTT
*
93873641 TTTAAAAATTAGATAAAATTA
1 TTTAAAAATTAGAAAAAATTA
**
93873662 TTTAAAAATTTTAAAAAAT
1 TTTAAAAATTAGAAAAAAT
93873681 GTTCATAACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (21 bp):
TTTAAAAATTAGAAAAAATTA
Found at i:93875449 original size:17 final size:17
Alignment explanation
Indices: 93875419--93875458 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
93875409 AAAACTTTGT
*
93875419 AAATA-AAAATATTCAA
1 AAATATAAAACATTCAA
93875435 AAATATAAAACATTCAA
1 AAATATAAAACATTCAA
93875452 AAA-ATAA
1 AAATATAA
93875459 TCAATCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (17 bp):
AAATATAAAACATTCAA
Found at i:93876061 original size:30 final size:32
Alignment explanation
Indices: 93876017--93876097 Score: 91
Period size: 33 Copynumber: 2.6 Consensus size: 32
93876007 ATATTTAAGC
93876017 TTTTATAT-AATTTTATAT-TTTT-ATG-TCT
1 TTTTATATAAATTTTATATATTTTCATGTTCT
93876045 TTTTATAATAAATTTTATATATTTTCATGTTCT
1 TTTTAT-ATAAATTTTATATATTTTCATGTTCT
**
93876078 TTAAATTATAAATTTT-TATA
1 TTTTA-TATAAATTTTATATA
93876098 AATTTGGAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
28 6 0.13
29 2 0.04
30 10 0.22
31 4 0.09
32 7 0.16
33 15 0.33
34 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (32 bp):
TTTTATATAAATTTTATATATTTTCATGTTCT
Found at i:93878602 original size:53 final size:53
Alignment explanation
Indices: 93878522--93878627 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
93878512 TATAGGCATG
*
93878522 CACAATGTACACTCCGTTTTTCAACGACACTTTTTTTGAATAAAACTTAGAAT
1 CACAATGTACACTCCGTTTTTCAACGACACTTTCTTTGAATAAAACTTAGAAT
93878575 CACAATGTACACTCCGTTTTTCAACGACACTTTCTTTGAATAAAACTTAGAAT
1 CACAATGTACACTCCGTTTTTCAACGACACTTTCTTTGAATAAAACTTAGAAT
93878628 TTATGTTATG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (53 bp):
CACAATGTACACTCCGTTTTTCAACGACACTTTCTTTGAATAAAACTTAGAAT
Found at i:93889404 original size:9 final size:8
Alignment explanation
Indices: 93889390--93889489 Score: 87
Period size: 9 Copynumber: 11.8 Consensus size: 8
93889380 CCCTTCTCAT
93889390 TTTTTTTA
1 TTTTTTTA
93889398 CTTTTTTTA
1 -TTTTTTTA
93889407 TTTTTTT-
1 TTTTTTTA
*
93889414 TCTTTTGTA
1 T-TTTTTTA
93889423 TTTTTTTA
1 TTTTTTTA
93889431 TTTTTTTAA
1 TTTTTTT-A
* *
93889440 GTTTTATA
1 TTTTTTTA
93889448 TTTTTCTTA
1 TTTTT-TTA
93889457 TTTTATTT-
1 TTTT-TTTA
93889465 TGTTTATTTA
1 T-TTT-TTTA
93889475 TTTTATTTA
1 TTTT-TTTA
93889484 TTTTTT
1 TTTTTT
93889490 GTTAGTAATT
Statistics
Matches: 78, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
7 1 0.01
8 33 0.42
9 42 0.54
10 2 0.03
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (8 bp):
TTTTTTTA
Found at i:93889412 original size:16 final size:15
Alignment explanation
Indices: 93889391--93889489 Score: 71
Period size: 16 Copynumber: 6.4 Consensus size: 15
93889381 CCTTCTCATT
93889391 TTTTTTACTTTTTTTA
1 TTTTTTA-TTTTTTTA
93889407 TTTTTT-TTCTTTTGTA
1 TTTTTTATT-TTTT-TA
93889423 TTTTTTTATTTTTTTA
1 -TTTTTTATTTTTTTA
** * *
93889439 AGTTTTATATTTTTC
1 TTTTTTATTTTTTTA
93889454 TTATTTTATTTTGTTTA
1 TT-TTTTATTTT-TTTA
93889471 ---TTTATTTTATTTA
1 TTTTTTATTTT-TTTA
93889484 TTTTTT
1 TTTTTT
93889490 GTTAGTAATT
Statistics
Matches: 65, Mismatches: 9, Indels: 18
0.71 0.10 0.20
Matches are distributed among these distances:
13 12 0.18
14 2 0.03
15 15 0.23
16 21 0.32
17 13 0.20
18 2 0.03
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTTTTATTTTTTTA
Found at i:93889451 original size:23 final size:24
Alignment explanation
Indices: 93889401--93889461 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 24
93889391 TTTTTTACTT
*** *
93889401 TTTTTATTTTTTTTCTTTTGTATT
1 TTTTTATTTTTTTAAGTTTGTATA
93889425 TTTTTATTTTTTTAAGTTT-TATA
1 TTTTTATTTTTTTAAGTTTGTATA
* *
93889448 TTTTTCTTATTTTA
1 TTTTTATTTTTTTA
93889462 TTTTGTTTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
23 15 0.48
24 16 0.52
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (24 bp):
TTTTTATTTTTTTAAGTTTGTATA
Found at i:93889551 original size:20 final size:20
Alignment explanation
Indices: 93889522--93889579 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
93889512 AAATGTATAG
*
93889522 ATATTATTAAAATATATTTA
1 ATATTTTTAAAATATATTTA
*
93889542 ATATTTTT-AAAGATATTTA
1 ATATTTTTAAAATATATTTA
93889561 A-ACTTTTTTAAAATA-ATTT
1 ATA--TTTTTAAAATATATTT
93889580 TTATAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
18 1 0.03
19 11 0.34
20 16 0.50
21 4 0.12
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
ATATTTTTAAAATATATTTA
Found at i:93889636 original size:22 final size:20
Alignment explanation
Indices: 93889611--93889679 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
93889601 TTTTTAAATG
93889611 TTTAAATATTATTAAAAATATA
1 TTTAAA-ATT-TTAAAAATATA
*
93889633 TTTAACA-TTTAAAAATAATA
1 TTTAAAATTTTAAAAAT-ATA
*
93889653 TTTAAAATTTCAAAAATA-A
1 TTTAAAATTTTAAAAATATA
93889672 TTTCAAAA
1 TTT-AAAA
93889680 ATATATTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 12 0.29
20 15 0.37
21 9 0.22
22 5 0.12
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTAAAATTTTAAAAATATA
Found at i:93889647 original size:20 final size:19
Alignment explanation
Indices: 93889622--93889679 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 19
93889612 TTAAATATTA
*
93889622 TTAAAAATATATTTAACAT
1 TTAAAAATATATTTAAAAT
93889641 TTAAAAATAATATTTAAAAT
1 TTAAAAAT-ATATTTAAAAT
93889661 TTCAAAAATA-ATTTCAAAA
1 TT-AAAAATATATTT-AAAA
93889680 ATATATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
19 12 0.34
20 17 0.49
21 6 0.17
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
TTAAAAATATATTTAAAAT
Found at i:93889669 original size:21 final size:20
Alignment explanation
Indices: 93889622--93889672 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
93889612 TTAAATATTA
*
93889622 TTAAAAAT-ATATTTAACAT
1 TTAAAAATAATATTTAAAAT
93889641 TTAAAAATAATATTTAAAAT
1 TTAAAAATAATATTTAAAAT
93889661 TTCAAAAATAAT
1 TT-AAAAATAAT
93889673 TTCAAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 8 0.28
20 12 0.41
21 9 0.31
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAAAAATAATATTTAAAAT
Found at i:93889687 original size:13 final size:12
Alignment explanation
Indices: 93889658--93889717 Score: 54
Period size: 12 Copynumber: 5.0 Consensus size: 12
93889648 TAATATTTAA
93889658 AATTTCAAAAAT
1 AATTTCAAAAAT
93889670 AATTTCAAAAAT
1 AATTTCAAAAAT
**
93889682 ATATTTTTAAAAT
1 A-ATTTCAAAAAT
93889695 --TTAT-AAGAAAT
1 AATT-TCAA-AAAT
93889706 AATTTCAAAAAT
1 AATTTCAAAAAT
93889718 TAAAAATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
10 3 0.08
11 5 0.13
12 18 0.46
13 13 0.33
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (12 bp):
AATTTCAAAAAT
Found at i:93889787 original size:7 final size:7
Alignment explanation
Indices: 93889775--93889800 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
93889765 TTTAAAATAT
93889775 ATTTAAA
1 ATTTAAA
93889782 ATTTAAA
1 ATTTAAA
93889789 ATTTAAA
1 ATTTAAA
93889796 ATTTA
1 ATTTA
93889801 GAAAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
ATTTAAA
Found at i:93889877 original size:21 final size:21
Alignment explanation
Indices: 93889845--93889889 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
93889835 TATAAGACAT
*
93889845 AATTTCAAAAAATAATATTCAA
1 AATTTCAAAAAATAAT-TTAAA
93889867 AATTT-AAAAAATAATTTAAA
1 AATTTCAAAAAATAATTTAAA
93889887 AAT
1 AAT
93889890 AATATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.32
21 10 0.45
22 5 0.23
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (21 bp):
AATTTCAAAAAATAATTTAAA
Found at i:93889890 original size:32 final size:33
Alignment explanation
Indices: 93889843--93889911 Score: 104
Period size: 32 Copynumber: 2.1 Consensus size: 33
93889833 TTTATAAGAC
93889843 ATAATTTCAAAAAATAATATTCAAAATTTAAAAA
1 ATAATTT-AAAAAATAATATTCAAAATTTAAAAA
* *
93889877 ATAATTT-AAAAATAATATTTAAAATTTTAAAA
1 ATAATTTAAAAAATAATATTCAAAATTTAAAAA
93889909 ATA
1 ATA
93889912 TATATATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 26 0.79
34 7 0.21
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (33 bp):
ATAATTTAAAAAATAATATTCAAAATTTAAAAA
Found at i:93890774 original size:25 final size:26
Alignment explanation
Indices: 93890726--93890784 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
93890716 TTTTGAGCAA
*
93890726 TTTAATTT-TTTTCTTTTATGTTTTT
1 TTTAATTTCTTTTCTTTTATGTTTTC
* *
93890751 TTTACTTTCTTTTCTTTTCT-TTTTC
1 TTTAATTTCTTTTCTTTTATGTTTTC
*
93890776 TTTATTTTC
1 TTTAATTTC
93890785 CATTCTCTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 19 0.66
26 10 0.34
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (26 bp):
TTTAATTTCTTTTCTTTTATGTTTTC
Found at i:93891830 original size:43 final size:43
Alignment explanation
Indices: 93891782--93891869 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
93891772 TTTATTAAAA
93891782 TGGGTTTAACTAGCATTTGGTTTACGAAATATAATATGAATAT
1 TGGGTTTAACTAGCATTTGGTTTACGAAATATAATATGAATAT
93891825 TGGGTTTAACTAGCATTTGGTTTACGAAATATAATATGAATAT
1 TGGGTTTAACTAGCATTTGGTTTACGAAATATAATATGAATAT
93891868 TG
1 TG
93891870 AAATGTAATC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (43 bp):
TGGGTTTAACTAGCATTTGGTTTACGAAATATAATATGAATAT
Found at i:93891986 original size:42 final size:42
Alignment explanation
Indices: 93891910--93892095 Score: 133
Period size: 43 Copynumber: 4.4 Consensus size: 42
93891900 TAGCGGCGCC
* ** * *
93891910 TAAAAACGCCACTAAAGACCAGGATTTTTCGCGGCGCTTTTT
1 TAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCACTTTTT
* **
93891952 TAAAAACGCCGCTAAAGACTAGGACCTTTAGCGGCACTTTAAC
1 TAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCACTTT-TT
** * * * *
93891995 CGAAAATGCCGCTAAAGACCATGACATTTAACGGCACTTTGTTT
1 TAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCAC-TT-TTT
* * * * * * *
93892039 TCAAGACGCCAG-TATATAACA-GACCTTTAGCGACGCTTTTT
1 TAAAAACGCC-GCTAAAGACCAGGACCTTTAGCGGCACTTTTT
93892080 TAAAAACGCCGCTAAA
1 TAAAAACGCCGCTAAA
93892096 AAACATAAAC
Statistics
Matches: 108, Mismatches: 31, Indels: 11
0.72 0.21 0.07
Matches are distributed among these distances:
40 1 0.01
41 14 0.13
42 36 0.33
43 41 0.38
44 14 0.13
45 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
TAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCACTTTTT
Found at i:93892230 original size:98 final size:98
Alignment explanation
Indices: 93892061--93892257 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 98
93892051 TATATAACAG
93892061 ACCTTTAGCGACGCTTTTTTAAAAACGCCGCTAAAAAACATAAACTTTAAAAAATATATTTCAAT
1 ACCTTTAGCGACGCTTTTTTAAAAACGCCGCTAAAAAACATAAACTTTAAAAAATATATTTCAAT
93892126 TAAATAATATTTATTTTCTATGATAAATATTAT
66 TAAATAATATTTATTTTCTATGATAAATATTAT
*
93892159 ACCTTTAGCGACGCTTTTTTAAAAACGCCGCTAAAAAATATAAACTTTAAAAAATATATTTCAAT
1 ACCTTTAGCGACGCTTTTTTAAAAACGCCGCTAAAAAACATAAACTTTAAAAAATATATTTCAAT
93892224 TAAATAATATTTATTTTCTATGATAAATATTAT
66 TAAATAATATTTATTTTCTATGATAAATATTAT
93892257 A
1 A
93892258 TTATGTTTAT
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (98 bp):
ACCTTTAGCGACGCTTTTTTAAAAACGCCGCTAAAAAACATAAACTTTAAAAAATATATTTCAAT
TAAATAATATTTATTTTCTATGATAAATATTAT
Found at i:93896283 original size:7 final size:7
Alignment explanation
Indices: 93896273--93896297 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
93896263 ATAAAAACTA
93896273 AAATATT
1 AAATATT
93896280 AAATATT
1 AAATATT
93896287 AAATATT
1 AAATATT
93896294 AAAT
1 AAAT
93896298 TTTTAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATATT
Found at i:93896334 original size:16 final size:17
Alignment explanation
Indices: 93896297--93896336 Score: 73
Period size: 16 Copynumber: 2.4 Consensus size: 17
93896287 AAATATTAAA
93896297 TTTTTAATTTTTTAATT
1 TTTTTAATTTTTTAATT
93896314 TTTTTAA-TTTTTAATT
1 TTTTTAATTTTTTAATT
93896330 TTTTTAA
1 TTTTTAA
93896337 AGATTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTAATTTTTTAATT
Found at i:93896351 original size:9 final size:9
Alignment explanation
Indices: 93896297--93896358 Score: 51
Period size: 9 Copynumber: 7.1 Consensus size: 9
93896287 AAATATTAAA
93896297 TTTT-TAAT
1 TTTTATAAT
93896305 TTTT-TAAT
1 TTTTATAAT
*
93896313 TTTTTTAAT
1 TTTTATAAT
*
93896322 TTTTA-ATTT
1 TTTTATA-AT
*
93896331 TTTTAAAGAT
1 TTTTATA-AT
93896341 TTTTATAAT
1 TTTTATAAT
93896350 TTTTA-AAT
1 TTTTATAAT
93896358 T
1 T
93896359 AACATATAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
8 17 0.37
9 21 0.46
10 8 0.17
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (9 bp):
TTTTATAAT
Found at i:93896358 original size:8 final size:8
Alignment explanation
Indices: 93896292--93896358 Score: 62
Period size: 8 Copynumber: 7.9 Consensus size: 8
93896282 ATATTAAATA
93896292 TTAAATTT
1 TTAAATTT
*
93896300 TTAATTTT
1 TTAAATTT
*
93896308 TTAATTTT
1 TTAAATTT
*
93896316 TTTAATTT
1 TTAAATTT
*
93896324 TTAATTTTT
1 TTAA-ATTT
93896333 TTAAAGATTT
1 TT-AA-ATTT
93896343 TTATAATTT
1 TTA-AATTT
93896352 TTAAATT
1 TTAAATT
93896359 AACATATAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
8 28 0.57
9 13 0.27
10 8 0.16
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.67
Consensus pattern (8 bp):
TTAAATTT
Found at i:93896632 original size:22 final size:21
Alignment explanation
Indices: 93896606--93896692 Score: 63
Period size: 21 Copynumber: 4.0 Consensus size: 21
93896596 TTAAGGATTG
93896606 AGGTTTGGGTGTTAGGGTTTAT
1 AGGTTTGGGT-TTAGGGTTTAT
93896628 AGG-TTGGAGTTTTAAGGGTTTAT
1 AGGTTTGG-G-TTT-AGGGTTTAT
* *
93896651 -GATTTGAGATTTAGGGTTTA-
1 AGGTTTG-GGTTTAGGGTTTAT
* *
93896671 AGGTGTTGGGATTAAGGTTTAT
1 AGGT-TTGGGTTTAGGGTTTAT
93896693 CGTTTTTAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
21 24 0.47
22 13 0.25
23 13 0.25
24 1 0.02
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.44
Consensus pattern (21 bp):
AGGTTTGGGTTTAGGGTTTAT
Found at i:93896729 original size:22 final size:22
Alignment explanation
Indices: 93896619--93896731 Score: 81
Period size: 22 Copynumber: 5.1 Consensus size: 22
93896609 TTTGGGTGTT
* * *
93896619 AGGGTTTATAGGTTGGAGTTTTA
1 AGGGTTTAT-GATTTGAGATTTA
93896642 AGGGTTTATGATTTGAGATTT-
1 AGGGTTTATGATTTGAGATTTA
* * *
93896663 AGGGTTTAAGGTGTTGGGA-TTA
1 AGGGTTTATGAT-TTGAGATTTA
* *
93896685 A-GGTTTATCGTTTTTAG-TCTTA
1 AGGGTTTAT-GATTTGAGAT-TTA
*
93896707 AGGGGTTATGATTTGAGATTTA
1 AGGGTTTATGATTTGAGATTTA
93896729 AGG
1 AGG
93896732 TGTGGTGTTT
Statistics
Matches: 70, Mismatches: 13, Indels: 15
0.71 0.13 0.15
Matches are distributed among these distances:
21 21 0.30
22 33 0.47
23 16 0.23
ACGTcount: A:0.23, C:0.02, G:0.32, T:0.43
Consensus pattern (22 bp):
AGGGTTTATGATTTGAGATTTA
Found at i:93896810 original size:66 final size:65
Alignment explanation
Indices: 93896621--93896811 Score: 183
Period size: 65 Copynumber: 2.9 Consensus size: 65
93896611 TGGGTGTTAG
* * * ** *
93896621 GGTTTATAGGTTGGAGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTTAAGGTGTT-GGGATTA
1 GGTTTATCGTTTGTAGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTT-AGGTGTTAAAGAGTA
93896685 A
65 A
* * * * *
93896686 GGTTTATCGTTTTTAGTCTTAAGGGGTTATGATTTGAGATTTAAGGTGT-GGTGTTTAAAGAGTA
1 GGTTTATCGTTTGTAGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTTAGGTG-TTAAAGAGTA
93896750 A
65 A
* * *
93896751 -TTAATTAGT-GTTTGTAGTTTTAAGGGTTTATGATTAGAGATTTAGGGTTTAGGAGTTAAAG
1 GGT--TTA-TCGTTTGTAGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTTAGGTGTTAAAG
93896812 GGTTATTGAT
Statistics
Matches: 101, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
63 4 0.04
64 3 0.03
65 46 0.46
66 44 0.44
67 4 0.04
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.43
Consensus pattern (65 bp):
GGTTTATCGTTTGTAGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTTAGGTGTTAAAGAGTAA
Found at i:93897547 original size:41 final size:41
Alignment explanation
Indices: 93897480--93897602 Score: 173
Period size: 41 Copynumber: 3.0 Consensus size: 41
93897470 TGCTTAATCT
93897480 TTTAGCGGCG-TTT-TTAAGAAAGCGCCGCTAATGCTCAGATC
1 TTTAGCGGCGCTTTCTTAA-AAA-CGCCGCTAATGCTCAGATC
93897521 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATC
* *
93897562 TTCAGCGGCGCTTTCTTAAAAACG-CGACTAATACTCA-ATC
1 TTTAGCGGCGCTTTCTTAAAAACGCCG-CTAATGCTCAGATC
93897602 T
1 T
93897603 ATTCGATTTT
Statistics
Matches: 77, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
40 6 0.08
41 61 0.79
42 6 0.08
43 4 0.05
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (41 bp):
TTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCAGATC
Found at i:93900346 original size:21 final size:21
Alignment explanation
Indices: 93900320--93900363 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
93900310 GTAGTAGACT
93900320 AGTACAAAATTTAATTTAAAA
1 AGTACAAAATTTAATTTAAAA
93900341 AGTACAAAATTTAATTTAAAA
1 AGTACAAAATTTAATTTAAAA
93900362 AG
1 AG
93900364 CAAGGTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
AGTACAAAATTTAATTTAAAA
Found at i:93901234 original size:16 final size:17
Alignment explanation
Indices: 93901203--93901235 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
93901193 GGTATTATGG
93901203 ATCAAATTGTAATGTTA
1 ATCAAATTGTAATGTTA
*
93901220 ATCAGATTG-AATGTTA
1 ATCAAATTGTAATGTTA
93901236 TGTTTGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.39
Consensus pattern (17 bp):
ATCAAATTGTAATGTTA
Found at i:93902987 original size:40 final size:40
Alignment explanation
Indices: 93902924--93903127 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
93902914 TGGAATTTAA
** *
93902924 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93902964 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93903004 CCGGATTTAGTAACTCGCACCAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
93903043 CC-GAAATTAGTAACTCGCACAAATTCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
93903083 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
93903123 CCGGA
1 CCGGA
93903128 CATCATTCGA
Statistics
Matches: 138, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.01
39 35 0.25
40 87 0.63
41 14 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:93903087 original size:79 final size:80
Alignment explanation
Indices: 93902945--93903125 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
93902935 TACTCGTTCA
* **
93902945 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
93903010 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
93903025 AATGCCTTC-GGACTTAGCCCGAA-ATTAGTAACTCGCACAAATTCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
93903087 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
93903104 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
93903126 GACATCATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 57 0.66
80 25 0.29
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:93906324 original size:26 final size:26
Alignment explanation
Indices: 93906291--93906342 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
93906281 AAACTCGAGT
93906291 AAAAGACAAGTAGGAAAATCTTTTTC
1 AAAAGACAAGTAGGAAAATCTTTTTC
*
93906317 AAAAGACAAGTAGGAAAATGTTTTTC
1 AAAAGACAAGTAGGAAAATCTTTTTC
93906343 TTCTCTTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (26 bp):
AAAAGACAAGTAGGAAAATCTTTTTC
Found at i:93919258 original size:40 final size:40
Alignment explanation
Indices: 93919203--93919360 Score: 280
Period size: 40 Copynumber: 4.0 Consensus size: 40
93919193 TGGAAAAAAA
*
93919203 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
93919243 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
93919283 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
93919323 TATAACCGGGTTAATTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
93919361 GTTACATCCG
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 114 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:93919384 original size:80 final size:80
Alignment explanation
Indices: 93919218--93919386 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 80
93919208 CCGGGTTAAG
93919218 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * ** *
93919283 TATAACCGGGTTAAG
66 TACAACCGAGCCAAA
* * * * *
93919298 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAATTCCCGAAGGCATTTGTGCTGGTTGT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
93919363 TACATCCGAGCCAAA
66 TACAACCGAGCCAAA
*
93919378 TTCCGAAGG
1 TCCCGAAGG
93919387 TATTTATGTT
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TACAACCGAGCCAAA
Found at i:93932164 original size:40 final size:40
Alignment explanation
Indices: 93932109--93932266 Score: 262
Period size: 40 Copynumber: 4.0 Consensus size: 40
93932099 TGGAAAAAAA
* * *
93932109 TATAACCGAGTTAAGTCTCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
93932149 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
93932189 TATAACCGGGTTAAGTCCAGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
93932229 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
93932267 GTTACATCCG
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:93932292 original size:80 final size:79
Alignment explanation
Indices: 93932121--93932292 Score: 227
Period size: 80 Copynumber: 2.1 Consensus size: 79
93932111 TAACCGAGTT
93932121 AAGTCTCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGT
1 AAGTC-CGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGT
* ***
93932186 TATTATAACCGGGTT
65 TATTACAACCGGCCA
* * *
93932201 AAGTCCAGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGT
1 AAGTCC-GAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGT
* *
93932266 TGTTACATCCGAGCCA
65 TATTACAACCG-GCCA
*
93932282 AATTCCGAAGG
1 AAGTCCGAAGG
93932293 TATTTATGTT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 73 0.91
81 6 0.08
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (79 bp):
AAGTCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
ATTACAACCGGCCA
Found at i:93939369 original size:27 final size:26
Alignment explanation
Indices: 93939338--93939515 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
93939328 TAAATTGTAC
93939338 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
93939365 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
93939391 ACGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
93939419 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
93939447 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
93939474 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
93939501 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
93939516 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:93939454 original size:82 final size:81
Alignment explanation
Indices: 93939339--93939494 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 81
93939329 AAATTGTACA
* * *
93939339 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGACGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGACGCACTAAGTGT
93939404 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * **
93939420 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGACGCACTAAGTG
*
93939485 TGCGAGTTGA
65 TGCGAATTGA
93939495 TTATATAGCA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGACGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:93939506 original size:82 final size:81
Alignment explanation
Indices: 93939335--93939515 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
93939325 GATTAAATTG
* * *
93939335 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGACGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGACGCACTAA
93939400 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * **
93939416 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGACGCACTA
* **
93939481 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
93939498 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
93939516 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
81 19 0.23
82 63 0.77
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGACGCACTAA
GTGTGCGAATTGACCA
Found at i:93944866 original size:94 final size:95
Alignment explanation
Indices: 93944705--93944927 Score: 281
Period size: 94 Copynumber: 2.4 Consensus size: 95
93944695 GTTATGTGAG
* * * * *
93944705 AACCAGTATAAAACCATGTCTGGGACATGGCATCGGTATTGAGACGAGGGCTAGTGTAAGACGTG
1 AACCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATAGAGACGAGGGCTAGTGTAAGACATG
* * *
93944770 TCTGGGATATGCATCAGCCAC-ATTATGAT
66 TCTAGGACATGCATCAGCCACGATGATGAT
* * * *
93944799 AACCAGTGTAAGACCATGTTTAGGACATGGCATCGGTGTAGAGATGAGTGCTAGTGTAAGACATG
1 AACCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATAGAGACGAGGGCTAGTGTAAGACATG
* *
93944864 TCTAGGACATGCATCGGCCTCGATGATGAT
66 TCTAGGACATGCATCAGCCACGATGATGAT
* *
93944894 AGCCAGTGTAAGA-CGTGTTTGGGACAT-GCATCGG
1 AACCAGTGTAAGACCATGTTTGGGACATGGCATCGG
93944928 CTAAGTTTCG
Statistics
Matches: 111, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
93 7 0.06
94 85 0.77
95 19 0.17
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (95 bp):
AACCAGTGTAAGACCATGTTTGGGACATGGCATCGGTATAGAGACGAGGGCTAGTGTAAGACATG
TCTAGGACATGCATCAGCCACGATGATGAT
Found at i:93944892 original size:47 final size:46
Alignment explanation
Indices: 93944719--93944928 Score: 154
Period size: 47 Copynumber: 4.5 Consensus size: 46
93944709 AGTATAAAAC
** * * ** *
93944719 CATGTCTGGGACATGGCATCGGTATTGAGACGAGGGCTAGTGTAAGA
1 CATGTCTGGGACAT-GCATCGGCCTCGAGATGATAGCCAGTGTAAGA
* * * * * *
93944766 CGTGTCTGGGATATGCATCAGCCAC-ATTATGATAACCAGTGTAAGA
1 CATGTCTGGGACATGCATCGGCCTCGA-GATGATAGCCAGTGTAAGA
* * ** * *
93944812 CCATGTTTAGGACATGGCATCGGTGTAGAGATGAGT-GCTAGTGTAAGA
1 -CATGTCTGGGACAT-GCATCGGCCTCGAGATGA-TAGCCAGTGTAAGA
*
93944860 CATGTCTAGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGA
1 CATGTCTGGGACATGCATCGGCCTCGA-GATGATAGCCAGTGTAAGA
* *
93944907 CGTGTTTGGGACATGCATCGGC
1 CATGTCTGGGACATGCATCGGC
93944929 TAAGTTTCGT
Statistics
Matches: 123, Mismatches: 33, Indels: 14
0.72 0.19 0.08
Matches are distributed among these distances:
45 1 0.01
46 30 0.24
47 70 0.57
48 20 0.16
49 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (46 bp):
CATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTAAGA
Found at i:93951164 original size:15 final size:14
Alignment explanation
Indices: 93951146--93951212 Score: 50
Period size: 15 Copynumber: 4.8 Consensus size: 14
93951136 AAAACACTAA
*
93951146 AACCTTAAAAACTCT
1 AACCCTAAAAA-TCT
93951161 AACCCTAAAAA--T
1 AACCCTAAAAATCT
*
93951173 AA-CCTAAAAGCTCT
1 AACCCTAAAA-ATCT
* *
93951187 AATCTTAAAAATCTT
1 AACCCTAAAAATC-T
93951202 AACCCTAAAAA
1 AACCCTAAAAA
93951213 AATCAATCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
11 7 0.17
12 3 0.07
14 5 0.12
15 26 0.63
ACGTcount: A:0.51, C:0.24, G:0.01, T:0.24
Consensus pattern (14 bp):
AACCCTAAAAATCT
Found at i:93951186 original size:26 final size:27
Alignment explanation
Indices: 93951146--93951198 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
93951136 AAAACACTAA
93951146 AACCTTAAAAACTCTAACCCTAAAAAT
1 AACCTTAAAAACTCTAACCCTAAAAAT
* * *
93951173 AACC-TAAAAGCTCTAATCTTAAAAAT
1 AACCTTAAAAACTCTAACCCTAAAAAT
93951199 CTTAACCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.51, C:0.23, G:0.02, T:0.25
Consensus pattern (27 bp):
AACCTTAAAAACTCTAACCCTAAAAAT
Found at i:93952793 original size:96 final size:94
Alignment explanation
Indices: 93952611--93952793 Score: 199
Period size: 96 Copynumber: 1.9 Consensus size: 94
93952601 ATAATATTAA
* * * * *
93952611 AAAACAAGTTTATTACCACTGCAGTAATATTTATTATTAAATAATTTTAAAAATTATTATTAACA
1 AAAACAAGTTAATTACCACTCCACTAATATTTATCATTAAATAATTTTAAAAAATATTATTAACA
**
93952676 TTATTAAAATGAATGTTATTTTTTTATATAG
66 TTATT--AATGAATGACATTTTTTTATATAG
* * *
93952707 AAAATAAGTTAATTACCACTCCACTCATATTTATCATTGAATAAGTTTTAAAAGAAAATATTATT
1 AAAACAAGTTAATTACCACTCCACTAATATTTATCATTAAATAA-TTTT--AA-AAAATATTATT
*
93952772 AACATTATT-AT-TATGACATTTT
62 AACATTATTAATGAATGACATTTT
93952794 GTCTTTTTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
96 45 0.62
97 6 0.08
99 2 0.03
100 19 0.26
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (94 bp):
AAAACAAGTTAATTACCACTCCACTAATATTTATCATTAAATAATTTTAAAAAATATTATTAACA
TTATTAATGAATGACATTTTTTTATATAG
Found at i:93955996 original size:11 final size:11
Alignment explanation
Indices: 93955976--93956029 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
93955966 TTAGAATATA
*
93955976 CCCATTCCTTG
1 CCCATACCTTG
93955987 CCCATACCTTG
1 CCCATACCTTG
*
93955998 CCCATACCTTT
1 CCCATACCTTG
*
93956009 CCCATACC-TA
1 CCCATACCTTG
93956019 CCCATACCTTG
1 CCCATACCTTG
93956030 GAAAGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:93956591 original size:18 final size:18
Alignment explanation
Indices: 93956568--93956623 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
93956558 CTATTTACGA
93956568 TACTATTCACGTATACAG
1 TACTATTCACGTATACAG
*
93956586 TACTATTTACGTATACAG
1 TACTATTCACGTATACAG
* *
93956604 TACTATTCACATATATAG
1 TACTATTCACGTATACAG
93956622 TA
1 TA
93956624 GTTGGGATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (18 bp):
TACTATTCACGTATACAG
Found at i:93963362 original size:43 final size:43
Alignment explanation
Indices: 93963301--93963386 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
93963291 ATTGTAGAAG
93963301 TTAACATCAATATGTAAAAATATCGATTTTGTTCAATAATGCA
1 TTAACATCAATATGTAAAAATATCGATTTTGTTCAATAATGCA
93963344 TTAACATCAATATGTAAAAATATCGATTTTGTTCAATAATGCA
1 TTAACATCAATATGTAAAAATATCGATTTTGTTCAATAATGCA
93963387 GATGCAAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (43 bp):
TTAACATCAATATGTAAAAATATCGATTTTGTTCAATAATGCA
Found at i:93965727 original size:24 final size:24
Alignment explanation
Indices: 93965700--93965751 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
93965690 TTAGTAAGTC
*
93965700 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
93965724 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
93965748 AAAT
1 AAAT
93965752 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:93967697 original size:24 final size:24
Alignment explanation
Indices: 93967670--93967721 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
93967660 TTAGTAAGTC
*
93967670 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
93967694 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
93967718 AAAT
1 AAAT
93967722 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:93972243 original size:23 final size:23
Alignment explanation
Indices: 93972213--93972258 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
93972203 CAACAAAAAG
93972213 AAAACATACATACCTGTATATAT
1 AAAACATACATACCTGTATATAT
93972236 AAAACATACATACCTGTATATAT
1 AAAACATACATACCTGTATATAT
93972259 TTCCAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.30
Consensus pattern (23 bp):
AAAACATACATACCTGTATATAT
Found at i:93987574 original size:19 final size:19
Alignment explanation
Indices: 93987546--93987587 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
93987536 ATCACTAATC
93987546 TTAA-GTTCAACAATAGCT
1 TTAATGTTCAACAATAGCT
93987564 TTAATGTTCAACAATAGCT
1 TTAATGTTCAACAATAGCT
93987583 TTAAT
1 TTAAT
93987588 TGTCCTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (19 bp):
TTAATGTTCAACAATAGCT
Found at i:93997377 original size:15 final size:16
Alignment explanation
Indices: 93997357--93997391 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
93997347 ACCCAGAATG
93997357 AAATAAAAT-AAAAAT
1 AAATAAAATAAAAAAT
93997372 AAAT-AAATAAAAAAT
1 AAATAAAATAAAAAAT
93997387 AAATA
1 AAATA
93997392 TAACCAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAAATAAAAAAT
Found at i:94001340 original size:40 final size:40
Alignment explanation
Indices: 94001296--94001488 Score: 307
Period size: 40 Copynumber: 4.8 Consensus size: 40
94001286 TAGCAACTCA
* *
94001296 CACAAATGCCTTTGGGTCTTAGCCCGGATATAGTCACTAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
*
94001336 CACAAATGCCTTCGGGACTTAGCCCGGATGTAGTCACTAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
*
94001376 CACAAATGCCTTCGGGACTTAGCCCGGATGTAGTCACTAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
*
94001416 CACAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTACTCG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATAGT--C-ACTAG
94001458 CACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CACAAATGCCTTCGGGACTTAGCCCGGATAT
94001489 CATCCGAATA
Statistics
Matches: 144, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 10 0.07
40 99 0.69
41 1 0.01
42 26 0.18
43 8 0.06
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAG
Found at i:94008606 original size:40 final size:40
Alignment explanation
Indices: 94008532--94008755 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
94008522 AACCCAAGTA
*
94008532 CCTTCGGG-CTTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGAC-TTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
94008571 CCTTTGGGTCTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
94008611 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
94008651 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
94008691 CCTTCGGGACTTAG-CCGGATATAGTAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT--C-ACTAGCACAAATG
94008733 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
94008756 CATCCGAATA
Statistics
Matches: 169, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
39 21 0.12
40 112 0.66
41 2 0.01
42 26 0.15
43 8 0.05
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:94011195 original size:12 final size:13
Alignment explanation
Indices: 94011179--94011208 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
94011169 ATATTTTAAA
94011179 ATAAAAATTAATT
1 ATAAAAATTAATT
94011192 -TAAAAATTAATT
1 ATAAAAATTAATT
94011204 ATAAA
1 ATAAA
94011209 CGAATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAAAAATTAATT
Found at i:94012196 original size:16 final size:17
Alignment explanation
Indices: 94012164--94012201 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
94012154 GTGAATGTTA
94012164 TTTCAAAATTATATATT
1 TTTCAAAATTATATATT
*
94012181 TTTCAAATATTTTAT-TT
1 TTTCAAA-ATTATATATT
94012198 TTTC
1 TTTC
94012202 TTTCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTCAAAATTATATATT
Found at i:94012504 original size:26 final size:26
Alignment explanation
Indices: 94012465--94012515 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
94012455 TTTGGTTAAT
* *
94012465 ATATATATTGAGCTTATACATATATA
1 ATATATATTAAGCTTATAAATATATA
*
94012491 ATATATGTTAAGCTTATAAATATAT
1 ATATATATTAAGCTTATAAATATAT
94012516 TATTAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (26 bp):
ATATATATTAAGCTTATAAATATATA
Found at i:94012546 original size:17 final size:18
Alignment explanation
Indices: 94012517--94012559 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
94012507 TAAATATATT
*
94012517 ATTAA-TAATTTCAGTTA
1 ATTAATTAATTTCAATTA
94012534 ATTAATTAA-TTCAATTA
1 ATTAATTAATTTCAATTA
*
94012551 ATGAATTAA
1 ATTAATTAA
94012560 ATTAATCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 20 0.87
18 3 0.13
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (18 bp):
ATTAATTAATTTCAATTA
Found at i:94016936 original size:15 final size:15
Alignment explanation
Indices: 94016918--94016950 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
94016908 AAATGACTTG
94016918 AAAAA-AAATAAAAAT
1 AAAAATAAA-AAAAAT
94016933 AAAAATAAAAAAAAT
1 AAAAATAAAAAAAAT
94016948 AAA
1 AAA
94016951 TGTTAGGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAATAAAAAAAAT
Found at i:94020011 original size:26 final size:24
Alignment explanation
Indices: 94019961--94020012 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
94019951 TCAACTTTAC
* *
94019961 TATTTTATAATTTGTTCTTTCATA
1 TATTTTATAATTTATTATTTCATA
*
94019985 TATTCTTATAAATTTATTATTTGATA
1 TATT-TTAT-AATTTATTATTTCATA
94020011 TA
1 TA
94020013 GGTTAAAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 4 0.17
25 4 0.17
26 15 0.65
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (24 bp):
TATTTTATAATTTATTATTTCATA
Found at i:94028577 original size:19 final size:20
Alignment explanation
Indices: 94028553--94028592 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
94028543 ACAGAGACAA
94028553 ATTCAAATTCAGATA-ACAG
1 ATTCAAATTCAGATATACAG
*
94028572 ATTCAATTTCAGATATACAG
1 ATTCAAATTCAGATATACAG
94028592 A
1 A
94028593 ATCCTACCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
ATTCAAATTCAGATATACAG
Found at i:94032549 original size:4 final size:4
Alignment explanation
Indices: 94032540--94032565 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
94032530 CTTGGGGACG
94032540 ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT
94032566 CAATATGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:94036364 original size:37 final size:37
Alignment explanation
Indices: 94036222--94036366 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
94036212 GCTCAGACGA
* * * * * *
94036222 AATCTCCACATGAAGTTATCAGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
*
94036259 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
94036296 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
94036333 AATCTCCACACGTAGTCATCGGGTCTTACCCAGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGA
94036367 ATATATTTCC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
Found at i:94036639 original size:47 final size:47
Alignment explanation
Indices: 94036577--94036965 Score: 517
Period size: 47 Copynumber: 8.1 Consensus size: 47
94036567 ACACGTTTCG
* * * ** *
94036577 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
94036624 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
94036671 CATTGGCCATCCGGCCTTATCACACATACGCACGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
94036718 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
** *
94036765 CATTGGCCATTCGGCCTTATCACACATATATATATACAAGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC------ATACGCATGTTCACATTCATCA
94036818 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
94036865 GATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
94036916 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
94036963 CAT
1 CAT
94036966 AAAATCCTAA
Statistics
Matches: 305, Mismatches: 27, Indels: 20
0.87 0.08 0.06
Matches are distributed among these distances:
47 218 0.71
51 43 0.14
53 44 0.14
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:94036718 original size:25 final size:25
Alignment explanation
Indices: 94036689--94036766 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
94036679 ATCCGGCCTT
94036689 ATCACACATACGCACGTTCACATTC
1 ATCACACATACGCACGTTCACATTC
** * * *
94036714 AT--CACATTGGC-CATTCGGCCTT-
1 ATCACACATACGCACGTTC-ACATTC
*
94036736 ATCACACATACGCATGTTCACATTC
1 ATCACACATACGCACGTTCACATTC
94036761 ATCACA
1 ATCACA
94036767 TTGGCCATTC
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 6 0.16
23 10 0.27
24 10 0.27
25 11 0.30
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.27
Consensus pattern (25 bp):
ATCACACATACGCACGTTCACATTC
Found at i:94036848 original size:100 final size:98
Alignment explanation
Indices: 94036577--94036965 Score: 578
Period size: 94 Copynumber: 4.0 Consensus size: 98
94036567 ACACGTTTCG
* * *
94036577 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACGTTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAAGTTCACATTCATCACATTGGCCATTCGG
* * *
94036638 CCTTATCTCATATATGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
* ** *
94036671 CATTGGCCATCCGGCCTTATCACAC----ATACGCACGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAAGTTCACATTCATCACATTGGCCATTCGG
94036732 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
94036765 CATTGGCCATTCGGCCTTATCACACATATATATATACAAGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACAC--ATATATATACAAGTTCACATTCATCACATTGGCCATTC
94036830 GGCCTTATCACACATACGCATGTTCACATTCATCA
64 GGCCTTATCACACATACGCATGTTCACATTCATCA
* **
94036865 GATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAAGTTCACATTCATCACATTGGCCATTCGG
*
94036930 CCTTATCACACATACGCATGTTCACATCCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
94036963 CAT
1 CAT
94036966 AAAATCCTAA
Statistics
Matches: 268, Mismatches: 17, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
92 2 0.01
94 100 0.37
95 1 0.00
96 3 0.01
98 72 0.27
100 90 0.34
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAAGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:94039283 original size:85 final size:85
Alignment explanation
Indices: 94039154--94039332 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
94039144 TATTTTATTG
*
94039154 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
94039219 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
94039239 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
94039304 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
94039324 CCCATGCTC
1 CCCATGCTC
94039333 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:94051301 original size:33 final size:33
Alignment explanation
Indices: 94051259--94051323 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
94051249 GGACATTTGG
94051259 TCAAATTACTTCATAAAAACTCTTAATTTTGAT
1 TCAAATTACTTCATAAAAACTCTTAATTTTGAT
94051292 TCAAATTACTTCATAAAAACTCTTAATTTTGA
1 TCAAATTACTTCATAAAAACTCTTAATTTTGA
94051324 CTCTTTTGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.15, G:0.03, T:0.42
Consensus pattern (33 bp):
TCAAATTACTTCATAAAAACTCTTAATTTTGAT
Found at i:94051764 original size:44 final size:44
Alignment explanation
Indices: 94051715--94051943 Score: 172
Period size: 45 Copynumber: 5.1 Consensus size: 44
94051705 GGTTGTAGAC
* * *
94051715 ACACAACAAAATTTCACAGATAGAATTTGCCTCTGGCTGTGGAT
1 ACACAACAAAATCTCGCAGATAGAATCTGCCTCTGGCTGTGGAT
* * * * *
94051759 ACACAACAAAAGTCTCTCAGATAAAATCTGCCTCTGGATGTGAAA
1 ACACAACAAAA-TCTCGCAGATAGAATCTGCCTCTGGCTGTGGAT
* * * * *
94051804 ACACAACAAATACCCCGCAGATAAAATCTGCCTTTGCCTGTGGAT
1 ACACAACAAA-ATCTCGCAGATAGAATCTGCCTCTGGCTGTGGAT
* * * * * *
94051849 GCACAA-AAATATCTCGTAGATGGAATTTGCCTTTGGCTATGGAT
1 ACACAACAAA-ATCTCGCAGATAGAATCTGCCTCTGGCTGTGGAT
* * * * * * *
94051893 GCACAAAAAAATATCCCGTAGATGGAATCTGCCTCCGGCTATGGAT
1 ACAC-AACAAA-ATCTCGCAGATAGAATCTGCCTCTGGCTGTGGAT
94051939 ACACA
1 ACACA
94051944 GTAAATTTGC
Statistics
Matches: 152, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
44 45 0.30
45 69 0.45
46 38 0.25
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (44 bp):
ACACAACAAAATCTCGCAGATAGAATCTGCCTCTGGCTGTGGAT
Found at i:94051919 original size:46 final size:45
Alignment explanation
Indices: 94051805--94051943 Score: 154
Period size: 46 Copynumber: 3.1 Consensus size: 45
94051795 GATGTGAAAA
* * * ** * *
94051805 CACAACAAATACCCCGCAGATAAAATCTGCCTTTGCCTGTGGATG
1 CACAAAAAATATCCCGTAGATGGAATCTGCCTTTGGCTATGGATG
* *
94051850 CAC-AAAAATATCTCGTAGATGGAATTTGCCTTTGGCTATGGATG
1 CACAAAAAATATCCCGTAGATGGAATCTGCCTTTGGCTATGGATG
** *
94051894 CACAAAAAAATATCCCGTAGATGGAATCTGCCTCCGGCTATGGATA
1 CAC-AAAAAATATCCCGTAGATGGAATCTGCCTTTGGCTATGGATG
94051940 CACA
1 CACA
94051944 GTAAATTTGC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 35 0.45
45 4 0.05
46 39 0.50
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (45 bp):
CACAAAAAATATCCCGTAGATGGAATCTGCCTTTGGCTATGGATG
Found at i:94057279 original size:40 final size:40
Alignment explanation
Indices: 94057217--94057514 Score: 356
Period size: 40 Copynumber: 7.5 Consensus size: 40
94057207 AAACTAAGTA
* * * *
94057217 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
** *
94057256 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94057296 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
94057336 CCTTCGGGACTTAGCCCGGA-ATTAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
94057376 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94057416 CCTTCGGGACTTAGCCCGGA-ATTCGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* * * *
94057456 CCTTCGGGACTTAACCCGGA-ATTTGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
94057496 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94057515 TTATCATCCA
Statistics
Matches: 227, Mismatches: 25, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
39 16 0.07
40 209 0.92
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:94059453 original size:28 final size:28
Alignment explanation
Indices: 94059396--94059575 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
94059386 TAAATTGTGC
*
94059396 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
94059423 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
94059451 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
94059479 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
94059506 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * *
94059534 AGCACTAAGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
94059561 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94059576 GACTTAATAT
Statistics
Matches: 145, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
27 65 0.45
28 80 0.55
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Done.