Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 290 of 356
Found at i:94439746 original size:23 final size:22
Alignment explanation
Indices: 94439701--94439803 Score: 84
Period size: 23 Copynumber: 4.5 Consensus size: 22
94439691 AAGCTCTTCC
*
94439701 TGAGCTGATGAACAGTAAACTCTAA
1 TGAGCTGA--AACAGTAAGCTCT-A
* *
94439726 TGAGCTGAAACGGTAACCTCTA
1 TGAGCTGAAACAGTAAGCTCTA
*
94439748 TCAAGCTG-AACAGTAAGCTC-A
1 T-GAGCTGAAACAGTAAGCTCTA
*
94439769 TAGAAGCTGAAACGGTAAGCTCTAA
1 T-G-AGCTGAAACAGTAAGCTCT-A
94439794 TGAGCTGAAA
1 TGAGCTGAAA
94439804 ATAGTAAACT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
21 2 0.03
22 17 0.26
23 35 0.54
24 1 0.02
25 10 0.15
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.21
Consensus pattern (22 bp):
TGAGCTGAAACAGTAAGCTCTA
Found at i:94443110 original size:44 final size:44
Alignment explanation
Indices: 94443059--94443142 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
94443049 AAGTATGACG
94443059 TTTTACTGAAAAATATGCAAAATTTATAAACAAAACCCATGAAA
1 TTTTACTGAAAAATATGCAAAATTTATAAACAAAACCCATGAAA
* *
94443103 TTTTACTGAATAATGTGCAAAATTTATAAACAAAACCCAT
1 TTTTACTGAAAAATATGCAAAATTTATAAACAAAACCCAT
94443143 TTTATAAGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (44 bp):
TTTTACTGAAAAATATGCAAAATTTATAAACAAAACCCATGAAA
Found at i:94447222 original size:21 final size:21
Alignment explanation
Indices: 94447196--94447236 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94447186 ATCTGCTCAA
* *
94447196 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
94447217 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
94447237 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:94457869 original size:38 final size:38
Alignment explanation
Indices: 94457810--94457884 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
94457800 GTATTCGAGT
* *
94457810 TAAAACCCGCAGGCTTCGTGCTGGTATTATATCCGGGA
1 TAAAACCCGCAGGCCTAGTGCTGGTATTATATCCGGGA
* *
94457848 TAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TAAAACCCGCAGGCCTAGTGCTGGTATTATATCCGGG
94457885 CCTTCGTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (38 bp):
TAAAACCCGCAGGCCTAGTGCTGGTATTATATCCGGGA
Found at i:94457939 original size:43 final size:43
Alignment explanation
Indices: 94457856--94458087 Score: 335
Period size: 43 Copynumber: 5.4 Consensus size: 43
94457846 GATAAATCCC
* * *
94457856 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
94457897 GCAGGCTTAGTGCCGGTGATGTGTATTTGGGCCTTCGCGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
94457940 GCAGGCTTAGTGCCGGTGATGTGTATTAGGGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
94457983 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
94458026 GCAGGCTTCA-TGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTT-AGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
94458069 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
94458088 AATGATATGT
Statistics
Matches: 172, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
41 15 0.09
42 3 0.02
43 154 0.90
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:94458471 original size:45 final size:42
Alignment explanation
Indices: 94458404--94458511 Score: 110
Period size: 45 Copynumber: 2.5 Consensus size: 42
94458394 TTGACTTGAT
* * *
94458404 TATTCGGGCTTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
***
94458449 TATTCGGGCCTTCGAGCCTAGCAGGTTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
94458491 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
94458512 ACAGGCGAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.24
44 7 0.13
45 32 0.58
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:94459826 original size:22 final size:22
Alignment explanation
Indices: 94459799--94459847 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
94459789 TCCAAGTTAG
94459799 ATAAAACAATTAAAATA-AATA
1 ATAAAACAATTAAAATAGAATA
*
94459820 ACTAAAATAATTAAAATAGAATA
1 A-TAAAACAATTAAAATAGAATA
94459843 ATAAA
1 ATAAA
94459848 TATACGATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.76
23 5 0.20
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (22 bp):
ATAAAACAATTAAAATAGAATA
Found at i:94463232 original size:16 final size:16
Alignment explanation
Indices: 94463211--94463263 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
94463201 ATGAATCGGT
94463211 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCG
* *
94463227 AAAAGCCAAAAAGTCG
1 AAAAGCCAAAATGCCG
*
94463243 AAATA-CTAAAATGCCG
1 AAA-AGCCAAAATGCCG
94463259 AAAAG
1 AAAAG
94463264 TCGAAAGTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 1 0.03
16 28 0.93
17 1 0.03
ACGTcount: A:0.55, C:0.19, G:0.17, T:0.09
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:94463246 original size:24 final size:24
Alignment explanation
Indices: 94463225--94463269 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
94463215 GCCAAAATGC
94463225 CGAAAA-GCCAAAAAGTCGAAATA
1 CGAAAATGCCAAAAAGTCGAAATA
* *
94463248 CTAAAATGCCGAAAAGTCGAAA
1 CGAAAATGCCAAAAAGTCGAAA
94463270 GTTGGGCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.53, C:0.18, G:0.18, T:0.11
Consensus pattern (24 bp):
CGAAAATGCCAAAAAGTCGAAATA
Found at i:94463400 original size:9 final size:9
Alignment explanation
Indices: 94463376--94463413 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
94463366 AGGATTGGCC
94463376 AAATGGGCT
1 AAATGGGCT
94463385 GAAATGGGCT
1 -AAATGGGCT
94463395 AAATGGGCCT
1 AAATGGG-CT
94463405 -AATGGGCT
1 AAATGGGCT
94463413 A
1 A
94463414 TTGAGCCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 2 0.08
9 13 0.50
10 11 0.42
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (9 bp):
AAATGGGCT
Found at i:94463545 original size:29 final size:29
Alignment explanation
Indices: 94463481--94463599 Score: 111
Period size: 29 Copynumber: 4.2 Consensus size: 29
94463471 GTGAGTATGA
* * *
94463481 ATAT-AATATG-ATCTGGGTCTAATGGGTC
1 ATATGAATATGAAT-TGGGCCTAGTGGGCC
* *
94463509 ATATGAATGTGAATTCGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* *
94463538 ATAAGAATATGAATTGGGCC-AGATGGTCC
1 ATATGAATATGAATTGGGCCTAG-TGGGCC
* *
94463567 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
94463595 ATATG
1 ATATG
94463600 CATGTATGTA
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
28 23 0.32
29 48 0.66
30 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAGTGGGCC
Found at i:94464476 original size:20 final size:20
Alignment explanation
Indices: 94464451--94464493 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
94464441 CTATTATTAC
94464451 TTGAAGTATTATTATTTCCA
1 TTGAAGTATTATTATTTCCA
94464471 TTGAAGTATTATTATTTCCA
1 TTGAAGTATTATTATTTCCA
94464491 TTG
1 TTG
94464494 TAATTACGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (20 bp):
TTGAAGTATTATTATTTCCA
Found at i:94464686 original size:17 final size:18
Alignment explanation
Indices: 94464653--94464687 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
94464643 GTTTAATAAG
94464653 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
94464671 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
94464688 TTCAATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:94473771 original size:30 final size:31
Alignment explanation
Indices: 94473712--94473771 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
94473702 GGGTTGAGAT
* * *
94473712 GGAAGGGAATAAAAGTTTTGGGGGGAAAGTG
1 GGAAGGGAATAAAAGTTTTGAGAGAAAAGTG
*
94473743 GGAA-GGAGTAAAAGTTTTGAGAGAAAAGT
1 GGAAGGGAATAAAAGTTTTGAGAGAAAAGT
94473772 AAAAAGTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
GGAAGGGAATAAAAGTTTTGAGAGAAAAGTG
Found at i:94476353 original size:39 final size:39
Alignment explanation
Indices: 94476310--94476386 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
94476300 GCTAAATTAT
*
94476310 GAAAAACCAGCTTAAGGAGCTCTTCTATGGCTGTTTTTA
1 GAAAAACCAGCTTAAGGAGCTCTTCTATAGCTGTTTTTA
* *
94476349 GAAAAACTAGCTTAAGGAGCTCTTCTATAGTTGTTTTT
1 GAAAAACCAGCTTAAGGAGCTCTTCTATAGCTGTTTTT
94476387 GGCTGAAGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (39 bp):
GAAAAACCAGCTTAAGGAGCTCTTCTATAGCTGTTTTTA
Found at i:94478090 original size:8 final size:8
Alignment explanation
Indices: 94478077--94478101 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
94478067 TAAAAATTTG
94478077 AAATAATA
1 AAATAATA
94478085 AAATAATA
1 AAATAATA
94478093 AAATAATA
1 AAATAATA
94478101 A
1 A
94478102 GAGCTGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:94481176 original size:21 final size:21
Alignment explanation
Indices: 94481150--94481205 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
94481140 TAAACTATAG
94481150 TTCCATGACCATTATAGGCCT
1 TTCCATGACCATTATAGGCCT
94481171 TTCCATGACCATTATAGGCCT
1 TTCCATGACCATTATAGGCCT
94481192 TTCCATGACCATTA
1 TTCCATGACCATTA
94481206 GGTAGTTAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (21 bp):
TTCCATGACCATTATAGGCCT
Found at i:94490760 original size:39 final size:39
Alignment explanation
Indices: 94490697--94490774 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
94490687 CTTTCTTATC
*
94490697 ATATTAAGATCATGGCATCATCCTAGTTTAGCTCTAAGA
1 ATATAAAGATCATGGCATCATCCTAGTTTAGCTCTAAGA
*
94490736 ATATAAAGATCATGGCATCTTCCTAGTTTAGCTCTAAGA
1 ATATAAAGATCATGGCATCATCCTAGTTTAGCTCTAAGA
94490775 TACATACTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (39 bp):
ATATAAAGATCATGGCATCATCCTAGTTTAGCTCTAAGA
Found at i:94503239 original size:13 final size:13
Alignment explanation
Indices: 94503221--94503276 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
94503211 TGAATATTAA
94503221 AAATTTGATATAG
1 AAATTTGATATAG
*
94503234 AAATTT-AT-T-C
1 AAATTTGATATAG
* *
94503244 AAATTTTATATTAA
1 AAATTTGATA-TAG
94503258 AAATTTGATATAG
1 AAATTTGATATAG
94503271 AAATTT
1 AAATTT
94503277 ATTCAAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
10 6 0.17
11 3 0.09
12 2 0.06
13 15 0.43
14 9 0.26
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (13 bp):
AAATTTGATATAG
Found at i:94503259 original size:37 final size:38
Alignment explanation
Indices: 94503214--94503288 Score: 143
Period size: 37 Copynumber: 2.0 Consensus size: 38
94503204 TGTATTTTGA
94503214 ATATTAAAAATTTGATATAGAAATTTATTC-AAATTTT
1 ATATTAAAAATTTGATATAGAAATTTATTCAAAATTTT
94503251 ATATTAAAAATTTGATATAGAAATTTATTCAAAATTTT
1 ATATTAAAAATTTGATATAGAAATTTATTCAAAATTTT
94503289 TAAAATATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 30 0.81
38 7 0.19
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (38 bp):
ATATTAAAAATTTGATATAGAAATTTATTCAAAATTTT
Found at i:94503433 original size:19 final size:19
Alignment explanation
Indices: 94503411--94503447 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94503401 AAGATGCAAC
*
94503411 AAATTTTACAAGTTTTTAA
1 AAATTTTAAAAGTTTTTAA
*
94503430 AAATTTTAAAATTTTTTA
1 AAATTTTAAAAGTTTTTA
94503448 CAGTATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (19 bp):
AAATTTTAAAAGTTTTTAA
Found at i:94503510 original size:38 final size:36
Alignment explanation
Indices: 94503424--94503512 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 36
94503414 TTTTACAAGT
* * *
94503424 TTTTAAAAATTTTAAAATTTTTTACAGTATTTATGA
1 TTTTAAAATTTTTAAAATTTTCTACAGTATTAATGA
94503460 TTTCTAATAATTTTTAAAATTTTCTACA-TATCTAATGA
1 TTT-TAA-AATTTTTAAAATTTTCTACAGTAT-TAATGA
94503498 CTTTTATAAATTTTT
1 -TTTTA-AAATTTTT
94503513 TATAGTTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
36 3 0.07
37 6 0.13
38 32 0.71
39 4 0.09
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (36 bp):
TTTTAAAATTTTTAAAATTTTCTACAGTATTAATGA
Found at i:94503556 original size:67 final size:66
Alignment explanation
Indices: 94503433--94503557 Score: 148
Period size: 67 Copynumber: 1.9 Consensus size: 66
94503423 TTTTTAAAAA
* **
94503433 TTTTAAAATTTTTTACAGTATTTATGATTTCTAATAATTTTTAAAATTTTCTACATATCTAATGA
1 TTTTAAAATTTTTTACAGTATTTATAATTTCTAATAATTTTTAAAAAATTCTACATATCTAATGA
94503498 C
66 C
* *
94503499 TTTTATAAATTTTTTATAGTTTTTAATAAATTT-T-ATAA-TTTTAAAAAATTCTAACATAT
1 TTTTA-AAATTTTTTACAGTATTT-AT-AATTTCTAATAATTTTTAAAAAATTCT-ACATAT
94503558 TTTTAATTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
66 17 0.34
67 26 0.52
68 3 0.06
69 4 0.08
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (66 bp):
TTTTAAAATTTTTTACAGTATTTATAATTTCTAATAATTTTTAAAAAATTCTACATATCTAATGA
C
Found at i:94512164 original size:26 final size:26
Alignment explanation
Indices: 94512111--94512163 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
94512101 CAGAAAAAAA
* *
94512111 TTGATGATTTTGCCCTTGGTAAACTT
1 TTGACGATTTTGCCCTTAGTAAACTT
*
94512137 TTGACGATTTTGCCC-TAGTAAAATT
1 TTGACGATTTTGCCCTTAGTAAACTT
94512162 TT
1 TT
94512164 TAGAAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.45
Consensus pattern (26 bp):
TTGACGATTTTGCCCTTAGTAAACTT
Found at i:94512360 original size:40 final size:39
Alignment explanation
Indices: 94512314--94512399 Score: 138
Period size: 40 Copynumber: 2.2 Consensus size: 39
94512304 AAATTTCCAT
* *
94512314 TCTCATTTTCATTTGCATTTCCATTTTTTGGACACCTACA
1 TCTCATTTTCATTTCCATTTCCATTTTTTGGA-AACTACA
94512354 TCTCATTTTCATTTCCATTTCCATTTTTTGGAAACTACA
1 TCTCATTTTCATTTCCATTTCCATTTTTTGGAAACTACA
94512393 T-TCATTT
1 TCTCATTT
94512400 CCAAATGGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
38 6 0.14
39 7 0.16
40 31 0.70
ACGTcount: A:0.21, C:0.23, G:0.06, T:0.50
Consensus pattern (39 bp):
TCTCATTTTCATTTCCATTTCCATTTTTTGGAAACTACA
Found at i:94523178 original size:27 final size:27
Alignment explanation
Indices: 94523148--94523227 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
94523138 AATCTCGCAC
94523148 CCAAAGTGCCAATATCATGGCTCGAAG
1 CCAAAGTGCCAATATCATGGCTCGAAG
* * *
94523175 CCAAA-T--CAATGT-A--ACTC-AAA
1 CCAAAGTGCCAATATCATGGCTCGAAG
*
94523195 CTCGAAGTGCCAATATCATGGCTCGAAG
1 C-CAAAGTGCCAATATCATGGCTCGAAG
94523223 CCAAA
1 CCAAA
94523228 TCTCCCTAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
20 3 0.08
21 6 0.16
22 1 0.03
23 1 0.03
24 10 0.27
25 1 0.03
26 1 0.03
27 11 0.30
28 3 0.08
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.19
Consensus pattern (27 bp):
CCAAAGTGCCAATATCATGGCTCGAAG
Found at i:94523229 original size:48 final size:48
Alignment explanation
Indices: 94523089--94523229 Score: 176
Period size: 48 Copynumber: 2.9 Consensus size: 48
94523079 AGATGCTCGA
** * * * *
94523089 GAATCTCTTACCCTAAGTGCCAATATCATGGCCCAAAGCCAAATAAAT
1 GAATCTCAAACCCAAAGTGCCAATATCATGGCTCGAAGCCAAATCAAT
**
94523137 GAATCTCGCACCCAAAGTGCCAATATCATGGCTCGAAGCCAAATCAAT
1 GAATCTCAAACCCAAAGTGCCAATATCATGGCTCGAAGCCAAATCAAT
* *
94523185 GTAA-CTCAAACTCGAAGTGCCAATATCATGGCTCGAAGCCAAATC
1 G-AATCTCAAACCCAAAGTGCCAATATCATGGCTCGAAGCCAAATC
94523230 TCCCTAATGA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 80 0.98
49 2 0.02
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.21
Consensus pattern (48 bp):
GAATCTCAAACCCAAAGTGCCAATATCATGGCTCGAAGCCAAATCAAT
Found at i:94526035 original size:27 final size:26
Alignment explanation
Indices: 94525973--94526084 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
94525963 AGCATGGCTG
* * *
94525973 CCAGAATAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
94525999 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
94526027 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
94526054 CTAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
94526081 CCAG
1 CCAG
94526085 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:94526064 original size:54 final size:54
Alignment explanation
Indices: 94525973--94526084 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
94525963 AGCATGGCTG
* *
94525973 CCAGAATAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGC-GTAGCCA
** * *
94526027 CCAGAACAGATATATGTGGTAGAGCCACTAGAT-CAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
94526081 CCAG
1 CCAG
94526085 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.66
55 16 0.32
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
Found at i:94533791 original size:27 final size:26
Alignment explanation
Indices: 94533756--94533867 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
94533746 AGCATGGCTG
* *
94533756 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
94533782 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
94533810 CCAGAACCGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
**
94533837 CCAGATTAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
94533864 CCAG
1 CCAG
94533868 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:94533856 original size:54 final size:54
Alignment explanation
Indices: 94533756--94533867 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
94533746 AGCATGGCTG
*
94533756 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGC-GTAGCCA
* * * *
94533810 CCAGAACCGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
94533864 CCAG
1 CCAG
94533868 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 32 0.63
55 18 0.35
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
Found at i:94542958 original size:29 final size:29
Alignment explanation
Indices: 94542912--94543174 Score: 141
Period size: 29 Copynumber: 9.0 Consensus size: 29
94542902 TGTGCTAAAT
* * *
94542912 GATGGTCGTAACCGTCCCTTTTCATATTC
1 GATGATCGAAACCATCCCTTTTCATATTC
*
94542941 AATGATCGAAACCATCCCTTTTCATTAATT-
1 GATGATCGAAACCATCCCTTTTCA-T-ATTC
* **
94542971 GATGGTCGTCACCATCCCTTTTCATAGTT-
1 GATGATCGAAACCATCCCTTTTCATA-TTC
*
94543000 GAT-AGTC-ATCACCATCCCTTTTCATATTC
1 GATGA-TCGA-AACCATCCCTTTTCATATTC
* * * *
94543029 GAT-AGCTGAAACTATCCCTTTTTATAATC
1 GATGATC-GAAACCATCCCTTTTCATATTC
* * * *
94543058 GATAACCGAAGCTATCCCTTTTCATATTC
1 GATGATCGAAACCATCCCTTTTCATATTC
* * *
94543087 GATGGT-TATCACCATCCCTTTTCATAGTT-
1 GATGATCGA-AACCATCCCTTTTCATA-TTC
* *
94543116 GATGGTCGTCAA-CATCCCTTTTCATAATT-
1 GATGATCG-AAACCATCCCTTTTCAT-ATTC
* * *
94543145 GAT-AGCTGAAGCTATCCCTTTTCATATTC
1 GATGATC-GAAACCATCCCTTTTCATATTC
94543174 G
1 G
94543175 GTAGCTGAAG
Statistics
Matches: 183, Mismatches: 34, Indels: 34
0.73 0.14 0.14
Matches are distributed among these distances:
28 10 0.05
29 142 0.78
30 28 0.15
31 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (29 bp):
GATGATCGAAACCATCCCTTTTCATATTC
Found at i:94543109 original size:87 final size:87
Alignment explanation
Indices: 94542984--94543174 Score: 246
Period size: 87 Copynumber: 2.2 Consensus size: 87
94542974 GGTCGTCACC
94542984 ATCCCTTTTCATAGTT-GATAGTCATCACCATCCCTTTTCATA-TTCGATAGCT-G-AAACTATC
1 ATCCCTTTTCATA-TTCGATAGTCATCACCATCCCTTTTCATAGTT-GAT-GCTCGTAAAC-ATC
*
94543045 CCTTTTTATAATCGATAACCGAAGCT
62 CCTTTTCATAATCGATAACCGAAGCT
* * * *
94543071 ATCCCTTTTCATATTCGATGGTTATCACCATCCCTTTTCATAGTTGATGGTCGTCAACATCCCTT
1 ATCCCTTTTCATATTCGATAGTCATCACCATCCCTTTTCATAGTTGATGCTCGTAAACATCCCTT
* * *
94543136 TTCATAATTGATAGCTGAAGCT
66 TTCATAATCGATAACCGAAGCT
94543158 ATCCCTTTTCATATTCG
1 ATCCCTTTTCATATTCG
94543175 GTAGCTGAAG
Statistics
Matches: 92, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
86 4 0.04
87 83 0.90
88 5 0.05
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.39
Consensus pattern (87 bp):
ATCCCTTTTCATATTCGATAGTCATCACCATCCCTTTTCATAGTTGATGCTCGTAAACATCCCTT
TTCATAATCGATAACCGAAGCT
Found at i:94543132 original size:116 final size:116
Alignment explanation
Indices: 94542926--94543198 Score: 352
Period size: 116 Copynumber: 2.3 Consensus size: 116
94542916 GTCGTAACCG
* * * * * * *
94542926 TCCCTTTTCATATTCAATGATCGAAACCATCCCTTTTCATTAATTGATGGTCGTCACCATCCCTT
1 TCCCTTTTCATAATCGATAACCGAAGCTATCCCTTTTCA-TAATTGATGGTCATCACCATCCCTT
*
94542991 TTCATAGTTGATAGTCATCACCATCCCTTTTCAT-ATTCGATAGCTGAAACTA
65 TTCATAGTTGATAGTCATCAACATCCCTTTTCATAATT-GATAGCTGAAACTA
* *
94543043 TCCCTTTTTATAATCGATAACCGAAGCTATCCCTTTTCAT-ATTCGATGGTTATCACCATCCCTT
1 TCCCTTTTCATAATCGATAACCGAAGCTATCCCTTTTCATAATT-GATGGTCATCACCATCCCTT
* * *
94543107 TTCATAGTTGATGGTCGTCAACATCCCTTTTCATAATTGATAGCTGAAGCTA
65 TTCATAGTTGATAGTCATCAACATCCCTTTTCATAATTGATAGCTGAAACTA
* * * *
94543159 TCCCTTTTCATATTCGGTAGCTGAAGCTATCCCTTTTCAT
1 TCCCTTTTCATAATCGATAACCGAAGCTATCCCTTTTCAT
94543199 TGGTCGATGA
Statistics
Matches: 136, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
115 3 0.02
116 98 0.72
117 35 0.26
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (116 bp):
TCCCTTTTCATAATCGATAACCGAAGCTATCCCTTTTCATAATTGATGGTCATCACCATCCCTTT
TCATAGTTGATAGTCATCAACATCCCTTTTCATAATTGATAGCTGAAACTA
Found at i:94543179 original size:29 final size:29
Alignment explanation
Indices: 94543013--94543198 Score: 177
Period size: 29 Copynumber: 6.4 Consensus size: 29
94543003 AGTCATCACC
*
94543013 ATCCCTTTTCATATTCGATAGCTGAAACT
1 ATCCCTTTTCATATTCGATAGCTGAAGCT
* * * *
94543042 ATCCCTTTTTATAATCGATAACCGAAGCT
1 ATCCCTTTTCATATTCGATAGCTGAAGCT
* * *
94543071 ATCCCTTTTCATATTCGAT-GGTTATCA-CC
1 ATCCCTTTTCATATTCGATAGCTGA--AGCT
* *
94543100 ATCCCTTTTCATAGTT-GATGGTCGTCAA-C-
1 ATCCCTTTTCATA-TTCGATAG-C-TGAAGCT
94543129 ATCCCTTTTCATAATT-GATAGCTGAAGCT
1 ATCCCTTTTCAT-ATTCGATAGCTGAAGCT
*
94543158 ATCCCTTTTCATATTCGGTAGCTGAAGCT
1 ATCCCTTTTCATATTCGATAGCTGAAGCT
94543187 ATCCCTTTTCAT
1 ATCCCTTTTCAT
94543199 TGGTCGATGA
Statistics
Matches: 130, Mismatches: 17, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
27 3 0.02
28 6 0.05
29 112 0.86
30 7 0.05
32 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATAGCTGAAGCT
Found at i:94546317 original size:27 final size:27
Alignment explanation
Indices: 94546240--94546385 Score: 134
Period size: 27 Copynumber: 5.4 Consensus size: 27
94546230 GGGCAAAACA
** * *
94546240 GTCATTTTACCTTACAGGGGAATTAT-A
1 GTCATTTTACCTTATGGGGGTATT-TCG
* * * *
94546267 GTCATTATACCTTATAGGGATATTTTG
1 GTCATTTTACCTTATGGGGGTATTTCG
94546294 GTCATTTTATCC-TATGGGGGTATTTCG
1 GTCATTTTA-CCTTATGGGGGTATTTCG
* * *
94546321 ATGATTTTACCTTATGGGGGTATTCCG
1 GTCATTTTACCTTATGGGGGTATTTCG
* *
94546348 GTCATTTTACCTTATGGGGTTATTTCA
1 GTCATTTTACCTTATGGGGGTATTTCG
*
94546375 GTCATGTTACC
1 GTCATTTTACC
94546386 CGATTAAGGG
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.03
27 93 0.95
28 2 0.02
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCTTATGGGGGTATTTCG
Found at i:94547978 original size:43 final size:42
Alignment explanation
Indices: 94547931--94548067 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 42
94547921 TCCCGGACGT
*
94547931 GGTCTTACATGTAATTCAATGTCGATGCCTTTGTCCCAGACAA
1 GGTCTTACATGTAATTCAAT-TCGATGCCTATGTCCCAGACAA
* * * *
94547974 GGTCTTACATGGAA-TCAGATACGATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAATTCA-ATTCGATGCCTATGTCCCAGACAA
* * * * *
94548016 GGTCTTATACGTAAATCTCAA-TCGAGGCCTATGTCCTAGACAC
1 GGTCTTACATGT-AAT-TCAATTCGATGCCTATGTCCCAGACAA
94548059 GGTCTTACA
1 GGTCTTACA
94548068 CGATGTCTCA
Statistics
Matches: 76, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
42 30 0.39
43 42 0.55
44 1 0.01
45 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (42 bp):
GGTCTTACATGTAATTCAATTCGATGCCTATGTCCCAGACAA
Found at i:94548010 original size:42 final size:43
Alignment explanation
Indices: 94547912--94548022 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
94547902 AACAGGTACA
* * * * *
94547912 ATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAATGTCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGGAATTCAATGACG
** *
94547955 ATGCCTTTGTCCCAGACAAGGTCTTACATGGAA-TCAGAT-ACG
1 ATGCCGATGTCCCAGACATGGTCTTACATGGAATTCA-ATGACG
94547997 ATGCCGATGTCCCAGACATGGTCTTA
1 ATGCCGATGTCCCAGACATGGTCTTA
94548023 TACGTAAATC
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 28 0.50
43 28 0.50
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACATGGAATTCAATGACG
Found at i:94548057 original size:85 final size:84
Alignment explanation
Indices: 94547912--94548067 Score: 197
Period size: 85 Copynumber: 1.8 Consensus size: 84
94547902 AACAGGTACA
* * * * *
94547912 ATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAATGTCGATGCCTTTGTCCCAGACAAGGT
1 ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAA-GTCGAGGCCTATGTCCCAGACAAGGT
94547977 CTTACATGGAATCAGATACG
65 CTTACATGGAATCAGATACG
* * * *
94547997 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAA-TCGAGGCCTATGTCCTAGACACGG
1 ATGCCGACGTCCCAGACATGGTCTTACACGT-AAT-TCAAGTCGAGGCCTATGTCCCAGACAAGG
94548061 TCTTACA
64 TCTTACA
94548068 CGATGTCTCA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 53 0.88
86 3 0.05
87 4 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (84 bp):
ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAAGTCGAGGCCTATGTCCCAGACAAGGTC
TTACATGGAATCAGATACG
Found at i:94572665 original size:115 final size:113
Alignment explanation
Indices: 94572437--94572654 Score: 253
Period size: 115 Copynumber: 1.8 Consensus size: 113
94572427 TTTAGTTAAA
*
94572437 AAAATGATAATTATTAATATATAATTATATCCATTATAATATATATAAATTATTATCAATTTTAG
1 AAAATGATAATTATTAATATATAATTATATACATTATAATATATATAAATTATTATCAATTTTAG
* *
94572502 GATTAGTGTTAATTTAATCATATTTTATTTTATAAGTTTTTAATAATAAT
66 AATTAGTGTTAATTTAATCATATTTTATCTTAT-AG-TTTTAATAATAAT
* *
94572552 AAAATGATAATCT-TTAATATATAATTATATATATTATAATTTATATATTAATCT-TTATCAATT
1 AAAATGATAAT-TATTAATATATAATTATATACATTATAA--TATATATAAAT-TATTATCAATT
*
94572615 TAGCATAGAATTAG-GATTAGTTTTAATCATATTTTATCTT
62 T----TAGAATTAGTG-TTA-ATTTAATCATATTTTATCTT
94572655 TGTTTAAATA
Statistics
Matches: 87, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
115 35 0.40
116 1 0.01
117 20 0.23
118 1 0.01
120 1 0.01
121 11 0.13
122 18 0.21
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.49
Consensus pattern (113 bp):
AAAATGATAATTATTAATATATAATTATATACATTATAATATATATAAATTATTATCAATTTTAG
AATTAGTGTTAATTTAATCATATTTTATCTTATAGTTTTAATAATAAT
Found at i:94578998 original size:40 final size:39
Alignment explanation
Indices: 94578934--94579145 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 39
94578924 TCTTCGGAAT
* * *
94578934 TTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
94578973 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
94579013 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * *
94579053 TTATCCCCGG-TATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTA-GCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * * *
94579093 TTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
94579133 TTAGCCCGGATAT
1 TTAGCCCGGATAT
94579146 CATTCAAATG
Statistics
Matches: 145, Mismatches: 21, Indels: 14
0.81 0.12 0.08
Matches are distributed among these distances:
39 15 0.10
40 118 0.81
41 12 0.08
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:94579072 original size:80 final size:80
Alignment explanation
Indices: 94578934--94579145 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
94578924 TCTTCGGAAT
* * * * * * *
94578934 TTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTACCCCGGATATAGCAACTCGCAC
94578998 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
94579013 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCCGG-TATAGCAACTCGCA
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTA-CCCCGGATATAGCAACTCGCA
94579077 CAAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
* * *
94579093 TTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTACCCCGGATAT
94579146 CATTCAAATG
Statistics
Matches: 120, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 9 0.08
80 106 0.88
81 5 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTACCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:94586232 original size:40 final size:39
Alignment explanation
Indices: 94586168--94586379 Score: 246
Period size: 40 Copynumber: 5.3 Consensus size: 39
94586158 TCTTCGGAAT
* * *
94586168 TTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
94586207 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
94586247 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
94586287 TTATCCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * * *
94586327 TTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
94586367 TTAGCCCGGATAT
1 TTAGCCCGGATAT
94586380 CATTCAAATG
Statistics
Matches: 145, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 10 0.07
40 128 0.88
41 7 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:94586295 original size:80 final size:80
Alignment explanation
Indices: 94586168--94586379 Score: 327
Period size: 80 Copynumber: 2.7 Consensus size: 80
94586158 TCTTCGGAAT
* * * * * *
94586168 TTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
94586232 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
94586247 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
94586312 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
94586327 TTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
94586380 CATTCAAATG
Statistics
Matches: 120, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 4 0.03
80 116 0.97
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:94591269 original size:21 final size:21
Alignment explanation
Indices: 94591243--94591284 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
94591233 AAAGATGATA
*
94591243 AATGGCCATCAATTCCACTTT
1 AATGGCCATCAATCCCACTTT
94591264 AATGGCCATCAATCCCACTTT
1 AATGGCCATCAATCCCACTTT
94591285 TCTTTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (21 bp):
AATGGCCATCAATCCCACTTT
Found at i:94600503 original size:29 final size:29
Alignment explanation
Indices: 94600469--94600687 Score: 377
Period size: 29 Copynumber: 7.6 Consensus size: 29
94600459 TAATCAACCG
* * *
94600469 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTCAGTGCCATGCA-TTTCAAGCT
* *
94600498 CGCACACTTAGCGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
94600527 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
94600556 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
94600585 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
94600614 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
94600643 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
94600672 CGCACACTCAGTGCCA
1 CGCACACTCAGTGCCA
94600688 ATCTCTCAAC
Statistics
Matches: 184, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
28 3 0.02
29 181 0.98
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTCAGTGCCATGCATTTCAAGCT
Found at i:94609981 original size:21 final size:24
Alignment explanation
Indices: 94609956--94609999 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
94609946 TAGGAATTAG
94609956 GGTGT-GTC-GTTTTCTC-CTTTA
1 GGTGTAGTCTGTTTTCTCTCTTTA
*
94609977 GGTGTAGTCTTTTTTCTCTCTTT
1 GGTGTAGTCTGTTTTCTCTCTTT
94610000 TCTTTTCCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 7 0.37
24 4 0.21
ACGTcount: A:0.05, C:0.18, G:0.20, T:0.57
Consensus pattern (24 bp):
GGTGTAGTCTGTTTTCTCTCTTTA
Found at i:94611202 original size:9 final size:9
Alignment explanation
Indices: 94611190--94611258 Score: 50
Period size: 9 Copynumber: 7.2 Consensus size: 9
94611180 TACGTGGGAT
94611190 ATGATATGC
1 ATGATATGC
*
94611199 ATGAT-TGAT
1 ATGATATG-C
94611208 ATGATATGCAC
1 ATGATATG--C
*
94611219 ATGATATGT
1 ATGATATGC
94611228 ATGATATGCAC
1 ATGATATG--C
*
94611239 ATGATATGT
1 ATGATATGC
*
94611248 ATGAAATGC
1 ATGATATGC
94611257 AT
1 AT
94611259 ATGATGTAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
8 2 0.04
9 27 0.56
10 2 0.04
11 17 0.35
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (9 bp):
ATGATATGC
Found at i:94611223 original size:20 final size:20
Alignment explanation
Indices: 94611189--94611263 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
94611179 ATACGTGGGA
94611189 TATGATATG--CATGAT-TG
1 TATGATATGCACATGATATG
94611206 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
94611227 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
* *
94611247 TATGAAATGCATATGAT
1 TATGATATGCACATGAT
94611264 GTAATCATAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 9 0.17
20 41 0.79
21 2 0.04
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:94611224 original size:11 final size:11
Alignment explanation
Indices: 94611208--94611246 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
94611198 CATGATTGAT
94611208 ATGATATGCAC
1 ATGATATGCAC
*
94611219 ATGATATG--T
1 ATGATATGCAC
94611228 ATGATATGCAC
1 ATGATATGCAC
94611239 ATGATATG
1 ATGATATG
94611247 TATGAAATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:94611351 original size:26 final size:26
Alignment explanation
Indices: 94611313--94611448 Score: 154
Period size: 26 Copynumber: 5.3 Consensus size: 26
94611303 GAGGAAGTGC
*
94611313 AAAAGAGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
** **
94611338 AAAAGGGCTTATGCCTTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
94611364 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
***
94611390 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
94611416 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
94611439 AAAAGAGGCT
1 AAAAG-GGCT
94611449 AGGCCTCCAG
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.08
25 15 0.16
26 66 0.71
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:94611390 original size:52 final size:52
Alignment explanation
Indices: 94611313--94611448 Score: 181
Period size: 52 Copynumber: 2.7 Consensus size: 52
94611303 GAGGAAGTGC
* * ** *
94611313 AAAAGAGC-TATGCCCCAGTTTATTGAAAAGGGCTTATGCCTTAGTTTACCG
1 AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
94611364 AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
*
94611416 AAAAGGGCTT-TGCCCC-AGTTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAATTTATTGAAAAG-GGCT
94611449 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
49 5 0.06
50 10 0.13
51 13 0.17
52 49 0.64
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
Found at i:94612275 original size:22 final size:22
Alignment explanation
Indices: 94612250--94612293 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
94612240 CTACGGATTC
94612250 CTACCTGGTGCCCAGCTTTCAT
1 CTACCTGGTGCCCAGCTTTCAT
94612272 CTACCTGGTGCCCAGCTTTCAT
1 CTACCTGGTGCCCAGCTTTCAT
94612294 TCACTTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.36, G:0.18, T:0.32
Consensus pattern (22 bp):
CTACCTGGTGCCCAGCTTTCAT
Found at i:94627868 original size:28 final size:28
Alignment explanation
Indices: 94627802--94627954 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
94627792 ATATTAAGTC
* * *
94627802 CGCACACTCAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
94627829 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
94627857 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
94627885 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
94627913 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
94627940 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94627955 GCACAATTTA
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 38 0.33
28 78 0.67
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:94627906 original size:83 final size:83
Alignment explanation
Indices: 94627802--94627954 Score: 236
Period size: 83 Copynumber: 1.8 Consensus size: 83
94627792 ATATTAAGTC
* *
94627802 CGCACACTCAGTGCTATATAATC-AGCTCGCACACCTAGTGCTACATAATCAAACTCGCACACTT
1 CGCACACTCAGTGCTACATAATCAAACTCGCACACCTAGTGCTACATAATC-AACTCGCACACTT
94627866 AGTGCTACATAGTCAAACT
65 AGTGCTACATAGTCAAACT
* * * *
94627885 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAATTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAAACTCGCACACCTAGTGCTACATAATCAACTCGCACACTTA
94627950 GTGCT
66 GTGCT
94627955 GCACAATTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
83 39 0.62
84 24 0.38
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (83 bp):
CGCACACTCAGTGCTACATAATCAAACTCGCACACCTAGTGCTACATAATCAACTCGCACACTTA
GTGCTACATAGTCAAACT
Found at i:94627973 original size:56 final size:55
Alignment explanation
Indices: 94627801--94627979 Score: 232
Period size: 56 Copynumber: 3.2 Consensus size: 55
94627791 CATATTAAGT
* * * * *
94627801 CCGCACACTCAGTGCTATATAATCAGCTCGCACACCTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAAC
*
94627856 TCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAAC
1 CCGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAAC
* * * * *
94627912 TCGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAAC
1 CCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAAC
*
94627968 CCGCACTCTTAG
1 CCGCACACTTAG
94627980 CGCCAATCTC
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
55 42 0.38
56 68 0.62
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.25
Consensus pattern (55 bp):
CCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAAC
Found at i:94636023 original size:28 final size:27
Alignment explanation
Indices: 94635933--94636084 Score: 250
Period size: 27 Copynumber: 5.6 Consensus size: 27
94635923 ATATTAAGTC
* * *
94635933 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
94635960 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
94635987 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
94636015 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
94636043 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
94636070 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94636085 GCACAATTTA
Statistics
Matches: 120, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
27 65 0.54
28 55 0.46
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:94636048 original size:83 final size:82
Alignment explanation
Indices: 94635933--94636084 Score: 259
Period size: 83 Copynumber: 1.8 Consensus size: 82
94635923 ATATTAAGTC
*
94635933 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAG
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAG
94635998 TGCTACATAGTCAAACT
66 TGCTACATAGTCAAACT
* * *
94636015 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATTCGCACACTTA
1 CGCACACTCAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAGTCAACTCGCACACTTA
94636080 GTGCT
65 GTGCT
94636085 GCACAATTTA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 20 0.31
83 45 0.69
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAG
TGCTACATAGTCAAACT
Found at i:94639778 original size:40 final size:40
Alignment explanation
Indices: 94639716--94640013 Score: 374
Period size: 40 Copynumber: 7.5 Consensus size: 40
94639706 AAACCAAGTA
* * *
94639716 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
94639755 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94639795 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
94639835 CCTTCGGGACTTAGCCCGGA-ATTAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
94639875 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
94639915 CCTTCGGGACTTAGCCCGGA-ATTACTAACTCGCA-ACAATT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* * * *
94639955 CCTTCGGGACTTAGCCC-GAAATTTGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
94639995 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94640014 TTATCATCCG
Statistics
Matches: 229, Mismatches: 21, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
39 18 0.08
40 208 0.91
41 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:94645350 original size:27 final size:26
Alignment explanation
Indices: 94645302--94645353 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
94645292 GCGAGGCTGC
*
94645302 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
94645328 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
94645354 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:94646185 original size:30 final size:31
Alignment explanation
Indices: 94646115--94646197 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
94646105 TCAATCTCAA
94646115 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* * *
94646145 CATGTCACTGGGCCGAAGGCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
94646175 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
94646198 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 26 0.55
31 21 0.45
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:94646464 original size:25 final size:23
Alignment explanation
Indices: 94646405--94646464 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 23
94646395 CTAGAGGCCT
*
94646405 AGCCTCTTTTAATAACTGCGGCAA
1 AGCC-CTTTTGATAACTGCGGCAA
*
94646429 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCC-TTTTGAT-AACTGCGGC-AA
94646455 AGCCCTTTTG
1 AGCCCTTTTG
94646465 CACTTCCTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 1 0.03
24 10 0.32
25 13 0.42
26 7 0.23
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (23 bp):
AGCCCTTTTGATAACTGCGGCAA
Found at i:94654322 original size:8 final size:8
Alignment explanation
Indices: 94654309--94654343 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
94654299 ATGAATCGGC
*
94654309 AAAAGCTG
1 AAAAGCCG
94654317 AAAAGCCG
1 AAAAGCCG
*
94654325 AAATGCCG
1 AAAAGCCG
94654333 AAAAGCCG
1 AAAAGCCG
94654341 AAA
1 AAA
94654344 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.51, C:0.20, G:0.23, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:94654619 original size:29 final size:29
Alignment explanation
Indices: 94654587--94654678 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
94654577 GGGCCTAACA
94654587 GGCCATATAAATGTGATTTGGGCCAAATG
1 GGCCATATAAATGTGATTTGGGCCAAATG
* * *
94654616 GGCCATATACAGGTGATTTGGGCCTAAAAG
1 GGCCATATAAATGTGATTTGGGCC-AAATG
* * **
94654646 GGCCATATGAATATGA-TTGGGCTTAATG
1 GGCCATATAAATGTGATTTGGGCCAAATG
94654674 GGCCA
1 GGCCA
94654679 GATACAGGTA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
28 8 0.15
29 28 0.54
30 16 0.31
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
GGCCATATAAATGTGATTTGGGCCAAATG
Found at i:94654663 original size:30 final size:29
Alignment explanation
Indices: 94654563--94654667 Score: 108
Period size: 29 Copynumber: 3.6 Consensus size: 29
94654553 GTGAGCATGA
* *
94654563 ATATGAATGTGACTGGGCCTAACA-GGCC
1 ATATGAATGTGATTGGGCCTAAAAGGGCC
* *
94654591 ATATAAATGTGATTTGGGCC-AAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAAAAGGGCC
*
94654620 ATAT-ACAGGTGATTTGGGCCTAAAAGGGCC
1 ATATGA-ATGTGA-TTGGGCCTAAAAGGGCC
*
94654650 ATATGAATATGATTGGGC
1 ATATGAATGTGATTGGGC
94654668 TTAATGGGCC
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
28 14 0.22
29 33 0.52
30 16 0.25
31 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
ATATGAATGTGATTGGGCCTAAAAGGGCC
Found at i:94654666 original size:58 final size:58
Alignment explanation
Indices: 94654576--94654687 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
94654566 TGAATGTGAC
* * *
94654576 TGGGCCTAACAGGCCATATAAATGTGATTTGGGCCAAATGGGCCATATACAGGTGATT
1 TGGGCCTAAAAGGCCATATAAATATGATTTGGGCCAAATGGGCCAGATACAGGTGATT
* **
94654634 TGGGCCTAAAAGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAAAA-GGCCATATAAATATGATTTGGGCCAAATGGGCCAGATACAGGT
94654688 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 33 0.70
59 14 0.30
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (58 bp):
TGGGCCTAAAAGGCCATATAAATATGATTTGGGCCAAATGGGCCAGATACAGGTGATT
Found at i:94677207 original size:29 final size:25
Alignment explanation
Indices: 94677152--94677203 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
94677142 CATTAATCGA
94677152 TCAACTAAGACCCAAACAACATCTT
1 TCAACTAAGACCCAAACAACATCTT
94677177 TCAACTAAGACCCAAACAACATCTT
1 TCAACTAAGACCCAAACAACATCTT
94677202 TC
1 TC
94677204 TTTCTTGGCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.33, G:0.04, T:0.21
Consensus pattern (25 bp):
TCAACTAAGACCCAAACAACATCTT
Found at i:94678210 original size:15 final size:14
Alignment explanation
Indices: 94678189--94678227 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
94678179 TTTTCCCCCA
*
94678189 TTTTTTGTTTCTTT
1 TTTTTTGTTTCTTC
*
94678203 TCTTTTTGGTTCTTC
1 T-TTTTTGTTTCTTC
94678218 TTTTTTGTTT
1 TTTTTTGTTT
94678228 TAATTTTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.00, C:0.10, G:0.10, T:0.79
Consensus pattern (14 bp):
TTTTTTGTTTCTTC
Found at i:94690969 original size:26 final size:26
Alignment explanation
Indices: 94690911--94690994 Score: 113
Period size: 26 Copynumber: 3.3 Consensus size: 26
94690901 CTGGAGGCCT
94690911 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
94690935 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
94690961 AGCCCTTTTCAATAAACTGGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
94690986 AGCCCTTTT
1 AGCCCTTTT
94690995 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 5 0.09
24 5 0.09
25 19 0.36
26 24 0.45
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:94691075 original size:11 final size:11
Alignment explanation
Indices: 94691044--94691099 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
94691034 TTATGATTAC
94691044 ATCATGTGCAT
1 ATCATGTGCAT
* *
94691055 TTCA--TACAT
1 ATCATGTGCAT
94691064 ATCATGTGCAT
1 ATCATGTGCAT
*
94691075 ATCA--TACAT
1 ATCATGTGCAT
94691084 ATCATGTGCAT
1 ATCATGTGCAT
94691095 ATCAT
1 ATCAT
94691100 ATCAATCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:94691084 original size:9 final size:9
Alignment explanation
Indices: 94691056--94691118 Score: 56
Period size: 9 Copynumber: 6.6 Consensus size: 9
94691046 CATGTGCATT
94691056 TCATACATA
1 TCATACATA
*
94691065 TCATGTGCATA
1 TCA--TACATA
94691076 TCATACATA
1 TCATACATA
*
94691085 TCATGTGCATA
1 TCA--TACATA
94691096 TCATATCA-A
1 TCATA-CATA
94691105 TCATACATA
1 TCATACATA
94691114 TCATA
1 TCATA
94691119 TCCCACGTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
8 2 0.05
9 24 0.55
10 2 0.05
11 16 0.36
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (9 bp):
TCATACATA
Found at i:94691108 original size:20 final size:20
Alignment explanation
Indices: 94691044--94691100 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
94691034 TTATGATTAC
*
94691044 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
94691064 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
94691084 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
94691101 TCAATCATAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:94691113 original size:4 final size:5
Alignment explanation
Indices: 94691056--94691120 Score: 66
Period size: 5 Copynumber: 13.4 Consensus size: 5
94691046 CATGTGCATT
* *
94691056 TCATA -CATA TCATG TGCATA TCATA -CATA TCATG TGCATA TCATA TCA-A
1 TCATA TCATA TCATA T-CATA TCATA TCATA TCATA T-CATA TCATA TCATA
94691105 TCATA -CATA TCATA TC
1 TCATA TCATA TCATA TC
94691121 CCACGTATGA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
4 16 0.32
5 26 0.52
6 8 0.16
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (5 bp):
TCATA
Found at i:94707223 original size:13 final size:13
Alignment explanation
Indices: 94707202--94707241 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
94707192 GAAGCAATAG
*
94707202 CACACGGGCATGT
1 CACATGGGCATGT
94707215 CACATGGGCATGT
1 CACATGGGCATGT
94707228 CACATGGGCATGT
1 CACATGGGCATGT
94707241 C
1 C
94707242 CCTGTCAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.20
Consensus pattern (13 bp):
CACATGGGCATGT
Found at i:94718229 original size:54 final size:54
Alignment explanation
Indices: 94718165--94718275 Score: 195
Period size: 54 Copynumber: 2.1 Consensus size: 54
94718155 TCTTGAGCAT
*
94718165 TGTCATCCCTTTATTCTTCCACTTATATTGTATTCAATAATTTTATTAATTGAA
1 TGTCATCCCTTTATTCTTCCACTTATATTGCATTCAATAATTTTATTAATTGAA
* *
94718219 TGTCGTCCCTTTATTCTTCCACTTATATTGCATTCAATAGTTTTATTAATTGAA
1 TGTCATCCCTTTATTCTTCCACTTATATTGCATTCAATAATTTTATTAATTGAA
94718273 TGT
1 TGT
94718276 TTGTATAAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50
Consensus pattern (54 bp):
TGTCATCCCTTTATTCTTCCACTTATATTGCATTCAATAATTTTATTAATTGAA
Found at i:94726561 original size:45 final size:45
Alignment explanation
Indices: 94726492--94726579 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
94726482 AAACATGTGT
*
94726492 CACATACATCATGAACTCATACCACAAC-TCAATGAGTTCAGATGC
1 CACATACATCATGAACTCAAACCACAACTTC-ATGAGTTCAGATGC
*
94726537 CACATATATCATGAACTCAAACCACAACTTCATGAGTTCAGAT
1 CACATACATCATGAACTCAAACCACAACTTCATGAGTTCAGAT
94726580 CGCATAGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 38 0.95
46 2 0.05
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAAACCACAACTTCATGAGTTCAGATGC
Found at i:94731054 original size:38 final size:38
Alignment explanation
Indices: 94730998--94731097 Score: 96
Period size: 40 Copynumber: 2.6 Consensus size: 38
94730988 CACACCATCT
* *
94730998 CCATCCAA-CCCATCACACCATGTGGGGATAAAATCAAC
1 CCATCCAATCCTA-CACACCATATGGGGATAAAATCAAC
* ** *
94731036 CCA-CCCATCCCTACACACCATATATGGGGATTTAATGAAC
1 CCATCCAAT-CCTACACACC--ATATGGGGATAAAATCAAC
94731076 CCATCCAATCCTACACACCATA
1 CCATCCAATCCTACACACCATA
94731098 AGGTACCGCG
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
37 3 0.06
38 12 0.24
39 3 0.06
40 28 0.56
41 4 0.08
ACGTcount: A:0.35, C:0.36, G:0.10, T:0.19
Consensus pattern (38 bp):
CCATCCAATCCTACACACCATATGGGGATAAAATCAAC
Found at i:94736123 original size:42 final size:42
Alignment explanation
Indices: 94736064--94736227 Score: 123
Period size: 42 Copynumber: 3.7 Consensus size: 42
94736054 TATTTGGGCA
*
94736064 TCCGAACTTGTTGAGTTGAGTCCGAGTTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGGATGCGAATG
* ** *
94736106 TCCGAGCTCGTTGAGTTGAGTCCGAGTTTGTGAGATG-TAACTAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATG-GATGCGAA-T--G
* * * *
94736151 CATCCAAATTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTT--C--ATGGATGCGAATG
* * *
94736199 CCCGAGCTCATTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
94736228 GCTTATAGGC
Statistics
Matches: 92, Mismatches: 19, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
42 30 0.33
43 5 0.05
44 1 0.01
45 1 0.01
46 22 0.24
47 24 0.26
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (42 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGGATGCGAATG
Found at i:94739212 original size:31 final size:31
Alignment explanation
Indices: 94739174--94739252 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
94739164 TTTAACGGTT
*
94739174 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATAATATC
94739205 ACTGGGCCGAAGCCTTTTCATAAATAATATC
1 ACTGGGCCGAAGCCTTTTCATAAATAATATC
*
94739236 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
94739253 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATAATATC
Found at i:94739323 original size:42 final size:41
Alignment explanation
Indices: 94739276--94739367 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 41
94739266 TGGCCCTTAG
*
94739276 GCCCATTTCAATATCACATGTAATGT-CAATGGATGTATGCAA
1 GCCCATTTCAATATCACATG-AAT-TACAATGAATGTATGCAA
*
94739318 GCCCATTTCAATATCACATGAATTACCAATGAATGTATGCCA
1 GCCCATTTCAATATCACATGAATTA-CAATGAATGTATGCAA
94739360 GCCCATTT
1 GCCCATTT
94739368 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
40 1 0.02
41 3 0.07
42 42 0.91
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (41 bp):
GCCCATTTCAATATCACATGAATTACAATGAATGTATGCAA
Found at i:94739582 original size:26 final size:26
Alignment explanation
Indices: 94739512--94739634 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
94739502 CCTCTTTAAT
**
94739512 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
94739537 AACTGGGGTA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
94739562 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
94739588 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
94739614 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
94739635 GCACTTCCCC
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 31 0.35
26 57 0.65
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:94739623 original size:52 final size:51
Alignment explanation
Indices: 94739512--94739634 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
94739502 CCTCTTTAAT
*
94739512 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGTAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
94739562 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
*
94739614 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
94739635 GCACTTCCCC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 10 0.14
51 24 0.35
52 35 0.51
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
Found at i:94740462 original size:27 final size:27
Alignment explanation
Indices: 94740432--94740496 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
94740422 GGGCATATTC
94740432 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
94740459 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
94740486 GTCTTTTTACC
1 GTCATTTTACC
94740497 TAATAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:94740584 original size:28 final size:28
Alignment explanation
Indices: 94740550--94740658 Score: 89
Period size: 28 Copynumber: 3.9 Consensus size: 28
94740540 GTAAATCTAC
94740550 AAACCAAGGGTATTTCAGTAATTTTGTT
1 AAACCAAGGGTATTTCAGTAATTTTGTT
* *
94740578 AAACCAATGGTATTTCCA-TAATTTT-TAG
1 AAACCAAGGGTATTT-CAGTAATTTTGT-T
* * *
94740606 AAAGTCAAGGGTATTTCTGTAACTTTG-T
1 AAA-CCAAGGGTATTTCAGTAATTTTGTT
* * **
94740634 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
94740659 ACAAATTAAG
Statistics
Matches: 65, Mismatches: 11, Indels: 11
0.75 0.13 0.13
Matches are distributed among these distances:
27 19 0.29
28 28 0.43
29 18 0.28
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (28 bp):
AAACCAAGGGTATTTCAGTAATTTTGTT
Found at i:94740728 original size:81 final size:81
Alignment explanation
Indices: 94740639--94740873 Score: 280
Period size: 81 Copynumber: 2.9 Consensus size: 81
94740629 TTTGTAAATC
*
94740639 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGATAATTTCACAAACC-AGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGATAATTTTACAAACCAAG-GGTATTT
*
94740703 TGGTAATTTTACAAACT
65 TAGTAATTTTACAAACT
* *
94740720 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA-TTTCAGTAATTTTACAAACCAAGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGA-TAATTTTACAAACCAAGGGTATTT
* * *
94740784 TAGCAATTTTATAGACT
65 TAGTAATTTTACAAACT
* ** * * ** *
94740801 A-GGGTGTTTTGGTAATTTTACTGATCGAA-GGTATTTTGGTAATTTTGTAAACCGAGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAAT-TAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
94740864 TAGTAATTTT
65 TAGTAATTTT
94740874 GTAAATCGAG
Statistics
Matches: 132, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 59 0.45
81 71 0.54
82 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTTT
AGTAATTTTACAAACT
Found at i:94740791 original size:27 final size:27
Alignment explanation
Indices: 94740535--94740873 Score: 227
Period size: 27 Copynumber: 12.5 Consensus size: 27
94740525 TACAAGAGTG
* *
94740535 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
** ** *
94740562 TTTCAGTAATTTTGTTAAACCAATGGTA
1 TTTTGGTAATTTT-ACAAACCAAGGGTA
*** * *
94740590 TTTCCATAATTTTTAGAAAGTCAAGGGTA
1 TTTTGGTAA-TTTTACAAA-CCAAGGGTA
* ** * *
94740619 TTTCT-GTAACTTTGTAAATCAGGGGTA
1 TTT-TGGTAATTTTACAAACCAAGGGTA
**
94740646 TTTTGGTAATTTTACAAATTAAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
* *
94740673 TTTTGATAATTTCACAAACC-AGTGGTA
1 TTTTGGTAATTTTACAAACCAAG-GGTA
* *
94740700 TTTTGGTAATTTTACAAACTAGGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
***
94740727 TTTTGGTAATTTTACAAATTGAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
**
94740754 TTTCAGTAATTTTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
* * * * * *
94740781 TTTTAGCAATTTTATAGA-CTAGGGTG
1 TTTTGGTAATTTTACAAACCAAGGGTA
* * *
94740807 TTTTGGTAATTTTACTGATCGAA-GGTA
1 TTTTGGTAATTTTAC-AAACCAAGGGTA
** *
94740834 TTTTGGTAATTTTGTAAACCGAGGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTA
*
94740861 TTTTAGTAATTTT
1 TTTTGGTAATTTT
94740874 GTAAATCGAG
Statistics
Matches: 240, Mismatches: 62, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
26 24 0.10
27 170 0.71
28 29 0.12
29 17 0.07
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAACCAAGGGTA
Found at i:94740874 original size:27 final size:27
Alignment explanation
Indices: 94740554--94740941 Score: 198
Period size: 27 Copynumber: 14.3 Consensus size: 27
94740544 ATCTACAAAC
* * *
94740554 CAAGGGTATTTCAGTAATTTTGTTAAAC
1 CAAGGGTATTTTAGTAATTTT-ATAAAT
* * *
94740582 CAATGGTATTTCCA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
94740611 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
94740638 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
94740665 TAAGGGTATTTT-GATAATTTCACAAA-
1 CAAGGGTATTTTAG-TAATTTTATAAAT
* * *
94740691 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTAGTAATTTTATAAAT
* * *
94740718 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
** * * *
94740746 TGAGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
94740773 CAAGGGTATTTTAGCAATTTTATAGA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
94740799 CTAGGGTGTTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAT
* * *
94740826 CGAA-GGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTTAGTAATTTTATAAAT
* *
94740853 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* **** *
94740880 CGAGGGTAAAACAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *** *
94740907 TAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
94740934 CGAGGGTA
1 CAAGGGTA
94740942 AAACGGTAAT
Statistics
Matches: 289, Mismatches: 56, Indels: 31
0.77 0.15 0.08
Matches are distributed among these distances:
26 26 0.09
27 218 0.75
28 25 0.09
29 20 0.07
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:94740942 original size:27 final size:27
Alignment explanation
Indices: 94740839--94740995 Score: 188
Period size: 27 Copynumber: 5.8 Consensus size: 27
94740829 AGGTATTTTG
* ****
94740839 GTAATTTTGTAAACCGAGGGTATTTTA
1 GTAATTTTGTAAATCGAGGGTAAAACA
94740866 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
** *
94740893 GTAATTTTGTAAATTAAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
94740920 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
94740947 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
94740974 GTAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTA
94740996 CTTTGGTAAT
Statistics
Matches: 112, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.32
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:94741008 original size:54 final size:54
Alignment explanation
Indices: 94740838--94740995 Score: 217
Period size: 54 Copynumber: 2.9 Consensus size: 54
94740828 AAGGTATTTT
* *** * *
94740838 GGTAATTTTGTAAACCGAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
* **
94740892 AGTAATTTTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
**
94740946 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
94740996 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (54 bp):
GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
Found at i:94741032 original size:81 final size:81
Alignment explanation
Indices: 94740857--94741040 Score: 188
Period size: 81 Copynumber: 2.3 Consensus size: 81
94740847 GTAAACCGAG
* * * *
94740857 GGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATTAAGGGTAAAATAGT
1 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGT
* *
94740922 AATTCTATAAATCGAG
66 AATTCTACAAATCGAA
*** * * * *** *
94740938 GGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGT
1 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGT
* * *
94741003 AATTTTACAATTTGAA
66 AATTCTACAAATCGAA
*
94741019 GGTATTTCAGTAATTTGGTAAA
1 GGTATTTCAGTAATTTTGTAAA
94741041 CTAAAGGCCC
Statistics
Matches: 79, Mismatches: 24, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGT
AATTCTACAAATCGAA
Found at i:94742046 original size:15 final size:15
Alignment explanation
Indices: 94742026--94742081 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
94742016 GTATCTTGGG
94742026 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
94742041 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
94742056 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
94742071 TTTCTTTATTC
1 TTTCTTTATTC
94742082 GGTTTTCCCG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:94743362 original size:39 final size:39
Alignment explanation
Indices: 94743309--94743471 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
94743299 GGACTTTAGC
* * * * *
94743309 CCGGACATATTTCCAGCACGTAGCCTACGGACCTTCAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
* *
94743348 CCAGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
*
94743387 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
*
94743426 CCGGATATAATTCCAGCACATAGCCTACAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
94743465 CCGGATA
1 CCGGATA
94743472 CACATCAAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
Found at i:94750537 original size:39 final size:39
Alignment explanation
Indices: 94750494--94750623 Score: 215
Period size: 39 Copynumber: 3.3 Consensus size: 39
94750484 CCAGACATAT
* * *
94750494 TTCCAGCACGTAGCCTACGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
94750533 TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
94750572 TTCCAGCACATAGCCTGCGGACCCAAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
94750611 TTCCAGCACATAG
1 TTCCAGCACATAG
94750624 TGTAACACCT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:94755422 original size:25 final size:25
Alignment explanation
Indices: 94755386--94755436 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
94755376 TAAAGAATTT
94755386 GCACACACAGTGCCTCA-ATTCATTC
1 GCACACACAGTGCCT-ATATTCATTC
*
94755411 GCACACATAGTGCCTATATTCATTC
1 GCACACACAGTGCCTATATTCATTC
94755436 G
1 G
94755437 TTATTACACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (25 bp):
GCACACACAGTGCCTATATTCATTC
Found at i:94755687 original size:43 final size:43
Alignment explanation
Indices: 94755567--94755674 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
94755557 CACCGGCATT
* * *
94755567 AAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGACACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACA
*
94755610 AAGCCTGCTAGGAACGAAGGCCCGAATACACATCACC-AGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGA-CACA
*
94755653 AAGCCTGCTAGGCATGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCC
94755675 TGATTTCACA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.02
43 57 0.98
ACGTcount: A:0.35, C:0.32, G:0.22, T:0.10
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACA
Found at i:94755751 original size:40 final size:40
Alignment explanation
Indices: 94755691--94755806 Score: 187
Period size: 40 Copynumber: 2.9 Consensus size: 40
94755681 CACATCATCG
* * *
94755691 GCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
*
94755731 GCACGAATGCTCTTCGGGACTTAGCCCGAATATAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
*
94755771 GCACGAATGCTCTTCGGGACTTAGCTCGGATATAAC
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
94755807 TCTCAATTCT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
Found at i:94758167 original size:37 final size:37
Alignment explanation
Indices: 94758108--94758253 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
94758098 AGCTCAGACG
* *
94758108 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94758145 AAATCTCCACACGTAGTCATCGGGTCTTACCCCGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
94758182 TAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94758219 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
94758254 ATATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:94758454 original size:48 final size:48
Alignment explanation
Indices: 94758400--94758534 Score: 243
Period size: 48 Copynumber: 2.8 Consensus size: 48
94758390 GCACATCGCC
94758400 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
94758448 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATGTCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
94758496 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
94758535 TGCATGTTTA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:94758576 original size:22 final size:22
Alignment explanation
Indices: 94758550--94758672 Score: 60
Period size: 22 Copynumber: 5.3 Consensus size: 22
94758540 GTTTATATTC
94758550 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
94758572 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
94758596 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
94758619 ATCACATACAT-G-CATGTTC-ACATT
1 ATCACAT---TGGCCA--TTCGGCCTT
94758643 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
94758666 ATCACAT
1 ATCACAT
94758673 ATATGCACAT
Statistics
Matches: 75, Mismatches: 8, Indels: 36
0.63 0.07 0.30
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:94758583 original size:47 final size:47
Alignment explanation
Indices: 94758504--94758697 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
94758494 CATACATATT
* * * * *
94758504 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTTATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
94758551 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
94758598 TCACATTGGCCATTCGGCCTTATCACATACATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
94758645 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
94758692 TCACAT
1 TCACAT
94758698 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:94758632 original size:94 final size:94
Alignment explanation
Indices: 94758464--94758697 Score: 303
Period size: 94 Copynumber: 2.5 Consensus size: 94
94758454 TTTCACACTA
* * *
94758464 GCCATTCGGCTTTA-C-CACATATGCATGTCTCATACATAT-TTCACATTAGCCATTCGGCTTTA
1 GCCATTCGGCCTTATCACACATATGCATG-CTC--ACAT-TCATCACATTAGCCATTCGGCCTTA
* * *
94758526 CCACATATATGCATGTTTATATTCATCACATTG
62 CCACATACATGCATGTTCACATTCATCACATTG
* *
94758559 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTACCAC
94758624 ATACATGCATGTTCACATTCATCACATTG
66 ATACATGCATGTTCACATTCATCACATTG
* ***
94758653 GCCATTCGGCCTTATCACATATATGCACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACAT
94758698 AAAATCCTAA
Statistics
Matches: 124, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.76
95 13 0.10
96 4 0.03
97 12 0.10
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTACCAC
ATACATGCATGTTCACATTCATCACATTG
Found at i:94758694 original size:25 final size:25
Alignment explanation
Indices: 94758619--94758698 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
94758609 ATTCGGCCTT
* **
94758619 ATCACATACATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
94758644 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
94758666 ATCACATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
94758691 ATCACATA
1 ATCACATA
94758699 AAATCCTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 10 0.24
23 6 0.15
24 5 0.12
25 20 0.49
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:94762680 original size:40 final size:40
Alignment explanation
Indices: 94762632--94762894 Score: 352
Period size: 40 Copynumber: 6.7 Consensus size: 40
94762622 GCCCGAATAC
* * * *
94762632 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * * * * *
94762672 ATAACACCAGCATGAATGCTTTTCGGAACTTAGCCCAGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
94762712 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
94762752 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCTGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * *
94762792 ATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
94762832 ACATCACTAGCACGACTGCTCTTC-GGA-TTAG-CCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
94762869 ACATCACTAGCACGAATGCTCTTCGG
1 ACATCACTAGCACGAATGCTCTTCGG
94762895 ATTTTATATA
Statistics
Matches: 197, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
37 29 0.15
38 5 0.03
39 2 0.01
40 161 0.82
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:94762769 original size:80 final size:78
Alignment explanation
Indices: 94762632--94763410 Score: 927
Period size: 80 Copynumber: 9.9 Consensus size: 78
94762622 GCCCGAATAC
* * * * * * * * *
94762632 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCATGAATGCTTTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
*
94762697 GAACTTAGCCCAGAT
66 G-A-TTAGCCCGGAT
94762712 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-
*
94762777 GGATTTAGCCTGGAT
65 GGA-TTAGCCCGGAT
* * * *
94762792 ATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGACTGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
94762857 GATTAG-CCGGAT
66 GATTAGCCCGGAT
** * * * * ** ***
94762869 ACATCACTAGCACGAATGCTCTTC-GGA-TT-----TTATATAGCAC--G-ATG-CTTTTC-GGA
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
** *
94762922 ACTTAGTCCGGAT
66 GATTAGCCCGGAT
*
94762935 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-
94763000 GGACTTAGCCCGGAT
65 GGA-TTAGCCCGGAT
* * *
94763015 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCTGGATATATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
*
94763080 GAACTTAGTCCGGAT
66 G-A-TTAGCCCGGAT
*
94763095 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-
94763160 GGACTTAGCCCGGAT
65 GGA-TTAGCCCGGAT
* *
94763175 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCA
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-
* *
94763240 GAACTTAGTCCGGAT
65 GGA-TTAGCCCGGAT
* *
94763255 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
*
94763320 GAACTTAGTCCGGAT
66 G-A-TTAGCCCGGAT
* *
94763335 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-
94763400 GGATTTAGCCC
65 GGA-TTAGCCC
94763411 AGACATTTCA
Statistics
Matches: 617, Mismatches: 62, Indels: 40
0.86 0.09 0.06
Matches are distributed among these distances:
65 4 0.01
66 34 0.06
67 5 0.01
68 3 0.00
70 7 0.01
73 7 0.01
75 3 0.00
76 4 0.01
77 31 0.05
78 4 0.01
79 6 0.01
80 503 0.82
81 6 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
GATTAGCCCGGAT
Found at i:94762845 original size:120 final size:120
Alignment explanation
Indices: 94762632--94763410 Score: 1070
Period size: 120 Copynumber: 6.6 Consensus size: 120
94762622 GCCCGAATAC
* * * * * * * * *
94762632 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCATGAATGCTTTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
*
94762697 GAACTTAGCCCAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
66 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * *
94762752 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCTGGATATATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
* *
94762817 GAACTTAGTCCGGATACATCACTAGCACGACTGCTCTTC-GGA-TTAG-CCGGAT
66 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
94762869 ACATCACTAGCACGAATGCTCTTC-GGA-TT--------T-TAT-A-TAGCACG-ATGCTTTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
* *
94762920 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
66 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
94762975 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
* * * * * *
94763040 GGATTTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
66 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
94763095 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
* *
94763160 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
66 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
94763215 ATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
* * * * *
94763280 GGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
66 GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
94763335 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
* *
94763400 GGATTTAGCCC
66 GAACTTAGCCC
94763411 AGACATTTCA
Statistics
Matches: 598, Mismatches: 44, Indels: 34
0.88 0.07 0.05
Matches are distributed among these distances:
103 47 0.08
104 10 0.02
105 5 0.01
106 33 0.06
107 4 0.01
108 2 0.00
115 2 0.00
116 4 0.01
117 32 0.05
118 5 0.01
119 10 0.02
120 444 0.74
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
GAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:94763422 original size:40 final size:40
Alignment explanation
Indices: 94762903--94763410 Score: 811
Period size: 40 Copynumber: 12.7 Consensus size: 40
94762893 GGATTTTATA
* * *
94762903 TAGCACG-ATGCTTTTCGGAACTTAGTCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
*
94762942 TAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
94762982 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
* * *
94763022 TAGCACGAATGCTCTTCGGGATTTAGCCTGGATATATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
* *
94763062 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
*
94763102 TAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
94763142 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
* *
94763182 TAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
* * *
94763222 TAGCACGAATGCTCTTCAGAACTTAGTCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
* *
94763262 TAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
* *
94763302 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
* *
94763342 TAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCAC
1 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
*
94763382 TAGCACGAATGCTCTTCGGGATTTAGCCC
1 TAGCACGAATGCTCTTCGGGACTTAGCCC
94763411 AGACATTTCA
Statistics
Matches: 432, Mismatches: 36, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 7 0.02
40 425 0.98
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
Found at i:94764750 original size:37 final size:37
Alignment explanation
Indices: 94764691--94764836 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
94764681 AGCTCAGACG
* *
94764691 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94764728 AAATCTCCACACGTAGTCATCGGGTCTTACCCCGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94764765 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94764802 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
94764837 ATATATTTCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:94765036 original size:48 final size:48
Alignment explanation
Indices: 94764983--94765117 Score: 234
Period size: 48 Copynumber: 2.8 Consensus size: 48
94764973 GCACATCGCC
*
94764983 TACATATTACACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
94765031 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATGTCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
94765079 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
94765118 TGCATGTTTA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:94765166 original size:47 final size:47
Alignment explanation
Indices: 94765087--94765280 Score: 282
Period size: 47 Copynumber: 4.1 Consensus size: 47
94765077 CATACATATT
* * * * *
94765087 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTTATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
94765134 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTT-ACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATG-TTCACATTCA
* *
94765181 TCACATTGGCCATTCGGCCTTATCACATACATGCATGTTCACATCCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
94765228 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
94765275 TCACAT
1 TCACAT
94765281 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.02
47 129 0.97
48 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:94765208 original size:94 final size:94
Alignment explanation
Indices: 94765047--94765280 Score: 289
Period size: 94 Copynumber: 2.5 Consensus size: 94
94765037 TTTCACACTA
* * *
94765047 GCCATTCGGCTTTA-C-CACATATGCATGTCTCATACATAT-TTCACATTAGCCATTCGGCTTTA
1 GCCATTCGGCCTTATCACACATATGCATG-CT--TACAT-TCATCACATTAGCCATTCGGCCTTA
* * * *
94765109 CCACATATATGCATGTTTATATTCATCACATTG
62 CCACATACATGCATGTTCACATCCATCACATTG
* *
94765142 GCCATTCGGCCTTATCACACATATGCATGCTTACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATATGCATGCTTACATTCATCACATTAGCCATTCGGCCTTACCAC
94765207 ATACATGCATGTTCACATCCATCACATTG
66 ATACATGCATGTTCACATCCATCACATTG
*
94765236 GCCATTCGGCCTTATCACATATATGCA--CATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATGCATGC-TT-ACATTCATCACAT
94765281 AAAATCCTAA
Statistics
Matches: 124, Mismatches: 10, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
92 1 0.01
93 3 0.02
94 92 0.74
95 13 0.10
96 3 0.02
97 12 0.10
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACACATATGCATGCTTACATTCATCACATTAGCCATTCGGCCTTACCAC
ATACATGCATGTTCACATCCATCACATTG
Found at i:94776481 original size:46 final size:46
Alignment explanation
Indices: 94776432--94776597 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 46
94776422 TATGAACTCG
*
94776432 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCA
* * * *
94776478 TTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAACTCA
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCCGAGCTCA
*
94776525 TTGAGTTGAGTCCGAGTTCACTTATGGTTGCGAACG-CTCGAGCTCA
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAGCTCA
* * *
94776571 TCGAGTTGAGTCCAAGTTCGCTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
94776598 GCGGGTTACA
Statistics
Matches: 97, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 4 0.04
46 50 0.52
47 27 0.28
48 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCA
Found at i:94780175 original size:69 final size:69
Alignment explanation
Indices: 94780062--94780197 Score: 245
Period size: 69 Copynumber: 2.0 Consensus size: 69
94780052 TCTTGTGGAA
* *
94780062 GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAACATTTACCTTTTTGAAAACCTGCATC
1 GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAAAATTTACCTTTTTGAAAACCCGCATC
94780127 CTGC
66 CTGC
*
94780131 GCTTTAAAACATGTTGCTTAAATGTGGTGTTTTGAAAAAAATTTACCTTTTTGAAAACCCGCATC
1 GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAAAATTTACCTTTTTGAAAACCCGCATC
94780196 CT
66 CT
94780198 ACTGCTAGCA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (69 bp):
GCTTTAAAACATGTTGCTTAAACGTGGTGTTTTGAAAAAAATTTACCTTTTTGAAAACCCGCATC
CTGC
Found at i:94783789 original size:45 final size:45
Alignment explanation
Indices: 94783733--94783820 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
94783723 AAACATGTGT
*
94783733 CACATACATCATGAACTCAGACCACAACTCAATGAGTTTAGATGC
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
* *
94783778 CACATATATCATGAACTCAGTCCACAACTCAATGAGTTCAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
94783821 CCCATAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:94783818 original size:21 final size:21
Alignment explanation
Indices: 94783749--94783818 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
94783739 CATCATGAAC
*
94783749 TCAGACCACAACTCAATGAGT
1 TCAGTCCACAACTCAATGAGT
* * **
94783770 TTAGATGCCACATATATC-ATGAAC
1 TCAG-T-CCACA-A-CTCAATGAGT
94783794 TCAGTCCACAACTCAATGAGT
1 TCAGTCCACAACTCAATGAGT
94783815 TCAG
1 TCAG
94783819 ATCCCATAGT
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 2 0.06
21 12 0.34
22 5 0.14
23 6 0.17
24 8 0.23
25 2 0.06
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (21 bp):
TCAGTCCACAACTCAATGAGT
Found at i:94784200 original size:14 final size:15
Alignment explanation
Indices: 94784181--94784213 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
94784171 TATTTAAGCA
94784181 AATATTA-TTATATT
1 AATATTATTTATATT
94784195 AATATTATTTTATATT
1 AATATTA-TTTATATT
94784211 AAT
1 AAT
94784214 TAAATAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
16 10 0.59
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
AATATTATTTATATT
Found at i:94785282 original size:16 final size:15
Alignment explanation
Indices: 94785253--94785302 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 15
94785243 TAATATAAAG
94785253 TGAATTGAAATATAT
1 TGAATTGAAATATAT
94785268 TGAATTGAGAATATAT
1 TGAATTGA-AATATAT
94785284 CTGATTATTTGAAATATAT
1 -TGA--A-TTGAAATATAT
94785303 ACTGATTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 3 0.10
19 8 0.27
20 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (15 bp):
TGAATTGAAATATAT
Found at i:94785307 original size:20 final size:20
Alignment explanation
Indices: 94785272--94785309 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
94785262 ATATATTGAA
94785272 TTGAGAATATATCTGATTAT
1 TTGAGAATATATCTGATTAT
94785292 TTGA-AATATATACTGATT
1 TTGAGAATATAT-CTGATT
94785310 GAAAACTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (20 bp):
TTGAGAATATATCTGATTAT
Found at i:94785719 original size:18 final size:18
Alignment explanation
Indices: 94785645--94785776 Score: 102
Period size: 18 Copynumber: 7.3 Consensus size: 18
94785635 TAAATAAAGG
**
94785645 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTAT
* * * *
94785663 TAGTGAATAATTAACTGT
1 TACTGAATAACTGACTAT
* * * *
94785681 TAGTGAATAAATAACTGT
1 TACTGAATAACTGACTAT
*
94785699 TACTGAATAACTGATTAT
1 TACTGAATAACTGACTAT
*
94785717 TACTGAATAATTGACTAT
1 TACTGAATAACTGACTAT
* * * *
94785735 TAATGAATAAATGGCTGT
1 TACTGAATAACTGACTAT
* *
94785753 TACTGAATAACTGATTGT
1 TACTGAATAACTGACTAT
94785771 TACTGA
1 TACTGA
94785777 GCAATTGATC
Statistics
Matches: 94, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 94 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (18 bp):
TACTGAATAACTGACTAT
Found at i:94785784 original size:54 final size:54
Alignment explanation
Indices: 94785645--94785776 Score: 183
Period size: 54 Copynumber: 2.4 Consensus size: 54
94785635 TAAATAAAGG
* * * * * *
94785645 TACTGAATAACTGACTGCTAGTGAATAATTAACTGTTAGTGAATAAATAACTGT
1 TACTGAATAACTGATTGTTACTGAATAATTGACTATTAATGAATAAATAACTGT
* **
94785699 TACTGAATAACTGATTATTACTGAATAATTGACTATTAATGAATAAATGGCTGT
1 TACTGAATAACTGATTGTTACTGAATAATTGACTATTAATGAATAAATAACTGT
94785753 TACTGAATAACTGATTGTTACTGA
1 TACTGAATAACTGATTGTTACTGA
94785777 GCAATTGATC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (54 bp):
TACTGAATAACTGATTGTTACTGAATAATTGACTATTAATGAATAAATAACTGT
Found at i:94785785 original size:18 final size:18
Alignment explanation
Indices: 94785696--94785795 Score: 65
Period size: 18 Copynumber: 5.6 Consensus size: 18
94785686 AATAAATAAC
*
94785696 TGTTACTGAATAACTGAT
1 TGTTACTGAACAACTGAT
* * * *
94785714 TATTACTGAATAATTGAC
1 TGTTACTGAACAACTGAT
* * * * **
94785732 TATTAATGAATAAATGGC
1 TGTTACTGAACAACTGAT
*
94785750 TGTTACTGAATAACTGAT
1 TGTTACTGAACAACTGAT
* *
94785768 TGTTACTGAGCAATTGAT
1 TGTTACTGAACAACTGAT
*
94785786 CGTTACTGAA
1 TGTTACTGAA
94785796 TGATATTGAT
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTTACTGAACAACTGAT
Done.