Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 291 of 356
Found at i:94789672 original size:25 final size:25
Alignment explanation
Indices: 94789644--94789695 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
94789634 CTTTCATATT
94789644 CATGCCTTTAGATATTAATTTCTAG
1 CATGCCTTTAGATATTAATTTCTAG
94789669 CATGCCTTTAGATATTAATTTCTAG
1 CATGCCTTTAGATATTAATTTCTAG
94789694 CA
1 CA
94789696 CGCATTCGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (25 bp):
CATGCCTTTAGATATTAATTTCTAG
Found at i:94790435 original size:13 final size:13
Alignment explanation
Indices: 94790417--94790444 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
94790407 TTAAGCCCCC
94790417 ACCACCGTCCACT
1 ACCACCGTCCACT
94790430 ACCACCGTCCACT
1 ACCACCGTCCACT
94790443 AC
1 AC
94790445 ATAAATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.54, G:0.07, T:0.14
Consensus pattern (13 bp):
ACCACCGTCCACT
Found at i:94801338 original size:17 final size:17
Alignment explanation
Indices: 94801316--94801349 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94801306 TTCAGATCAC
*
94801316 TAGACTCATTTCGAATT
1 TAGACTCAATTCGAATT
94801333 TAGACTCAATTCGAATT
1 TAGACTCAATTCGAATT
94801350 ATCCCATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (17 bp):
TAGACTCAATTCGAATT
Found at i:94803399 original size:30 final size:30
Alignment explanation
Indices: 94803359--94803429 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
94803349 AACTGACCCA
* * *
94803359 TGTGGTTCACATGTCTGTGTGACTAGGTCG
1 TGTGGCTCACATGCCTGTATGACTAGGTCG
94803389 TGTGGCTCACATGCCTGTATGACTAGGTCG
1 TGTGGCTCACATGCCTGTATGACTAGGTCG
94803419 TGTGGCTCACA
1 TGTGGCTCACA
94803430 CGGGCACAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.15, C:0.21, G:0.31, T:0.32
Consensus pattern (30 bp):
TGTGGCTCACATGCCTGTATGACTAGGTCG
Found at i:94817361 original size:42 final size:43
Alignment explanation
Indices: 94817253--94817417 Score: 142
Period size: 43 Copynumber: 3.8 Consensus size: 43
94817243 GACAAGTACA
* * *
94817253 ATGCCGATGTCCCAGACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATTCAATATCG
* * *
94817296 AAGCC-ACTATCCCAGACAGGGTCTTACACGAAATT-AGATAT-G
1 ATGCCGA-TGTCCCAGACATGGTCTTACACGAAATTCA-ATATCG
* *
94817338 ATGCCGATGTCCTAGACATGGTCTTACACGTAAATTTCAA-ACCG
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAA-TTCAATATCG
* * *
94817382 ATGCC-AGTGTCCCAAATACGGTCTTACACGATAATT
1 ATGCCGA-TGTCCCAGACATGGTCTTACACGA-AATT
94817418 TAGATCAATA
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 27 0.28
43 40 0.41
44 30 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAATTCAATATCG
Found at i:94820390 original size:15 final size:15
Alignment explanation
Indices: 94820358--94820386 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
94820348 ATTTTCTATG
94820358 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
94820373 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
94820387 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:94821275 original size:34 final size:33
Alignment explanation
Indices: 94821188--94821275 Score: 86
Period size: 34 Copynumber: 2.6 Consensus size: 33
94821178 AAATGGTCTG
** *
94821188 GGCCTTAGCCCATATCAGTGGCAATATCAGTGTG
1 GGCCTTAGCCCAT-TCAGTACCAATATCAGTGTA
* * * *
94821222 GGCCCTAGCCTATTACAGTACCAGTATCTGTGTA
1 GGCCTTAGCCCATT-CAGTACCAATATCAGTGTA
94821256 GGCCTTAGCCCAATTCAGTA
1 GGCCTTAGCCC-ATTCAGTA
94821276 TAGTATCAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
33 1 0.02
34 39 0.91
35 3 0.07
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (33 bp):
GGCCTTAGCCCATTCAGTACCAATATCAGTGTA
Found at i:94824134 original size:14 final size:15
Alignment explanation
Indices: 94824097--94824138 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
94824087 AAATATGAAC
94824097 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
94824113 TATA-ATGTGATA-G
1 TATATATGTGAAATG
94824126 TATATATGTGAAA
1 TATATATGTGAAA
94824139 GCCGAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:94825048 original size:29 final size:30
Alignment explanation
Indices: 94824996--94825134 Score: 149
Period size: 31 Copynumber: 4.6 Consensus size: 30
94824986 CTTGACAAAT
* *
94824996 ACTGGGCCGAAGCC-TTTCGTTTAACGGT-T-
1 ACTGGGCCGAAGCCTTTTC-ATTAAC-ATATC
* *
94825025 ACTGGGTCGAAGCCTTTTCATTAATTATATC
1 ACTGGGCCGAAGCCTTTTCATTAA-CATATC
*
94825056 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATTAA-CATATC
*
94825087 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATTAA-CATATC
*
94825118 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
94825135 ACTGTAAACG
Statistics
Matches: 98, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
29 18 0.18
30 5 0.05
31 75 0.77
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (30 bp):
ACTGGGCCGAAGCCTTTTCATTAACATATC
Found at i:94825067 original size:31 final size:31
Alignment explanation
Indices: 94825025--94825134 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
94825015 TTTAACGGTT
* * *
94825025 ACTGGGTCGAAGCCTTTTCATTAATTATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
94825056 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
94825087 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
94825118 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
94825135 ACTGTAAACG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:94825205 original size:42 final size:42
Alignment explanation
Indices: 94825158--94825249 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
94825148 TGGCCCTTAG
* ** *
94825158 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
94825200 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
94825242 GCCCATTT
1 GCCCATTT
94825250 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:94825465 original size:26 final size:26
Alignment explanation
Indices: 94825394--94825568 Score: 228
Period size: 26 Copynumber: 6.8 Consensus size: 26
94825384 CCTCTTTAAT
* **
94825394 AACTAGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
94825419 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
94825444 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
94825470 AACTGGGGCATAAGACCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
** **
94825496 AACTGGGATATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
94825522 AACTGGGGCATAATCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
94825548 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
94825569 GCACTTCCTC
Statistics
Matches: 128, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
25 31 0.24
26 97 0.76
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:94825511 original size:52 final size:51
Alignment explanation
Indices: 94825394--94825568 Score: 273
Period size: 52 Copynumber: 3.4 Consensus size: 51
94825384 CCTCTTTAAT
94825394 AACTAGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACT-GGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
94825444 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGACCTTTTCAATA
1 AACT-GGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
94825496 AACTGGGATATAAGCCCTTTTCGGTAAACTGGGGCATAATCCCTTTTCAATA
1 AACTGGG-CATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
94825548 AACTGGGGCATAAGCCCTTTT
1 AACT-GGGCATAAGCCCTTTT
94825569 GCACTTCCTC
Statistics
Matches: 116, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
50 10 0.09
51 28 0.24
52 75 0.65
53 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (51 bp):
AACTGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:94826517 original size:27 final size:26
Alignment explanation
Indices: 94826487--94826672 Score: 124
Period size: 27 Copynumber: 6.9 Consensus size: 26
94826477 GTAAATCTAC
*
94826487 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTT-T
* * **
94826514 AAACCAATGGTATTTCTATAATTTTT
1 AAACTAAGGGTATTTCGGTAATTTTT
* *
94826540 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAACT-AAGGGTATTTCGGTAATTTT-T
* *
94826570 AAA-TCAAGGGTATTTTGGTAATTTTA
1 AAACT-AAGGGTATTTCGGTAATTTTT
* * **
94826596 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACTAAGGGTATTTCGGTAATTT-TT
* *
94826623 AAACT-AGTGGTATTTTGGTAATTTTAC
1 AAACTAAG-GGTATTTCGGTAATTTT-T
* *
94826650 AAACTAGGGGTATTTTGGTAATT
1 AAACTAAGGGTATTTCGGTAATT
94826673 CTGCCCTATA
Statistics
Matches: 131, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
26 23 0.18
27 82 0.63
28 7 0.05
29 18 0.14
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (26 bp):
AAACTAAGGGTATTTCGGTAATTTTT
Found at i:94826592 original size:56 final size:53
Alignment explanation
Indices: 94826492--94826647 Score: 154
Period size: 56 Copynumber: 2.9 Consensus size: 53
94826482 TCTACAAACT
* *
94826492 AAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTC
1 AAGGGTATTTCAGTAATTTTGTAAA-CAAGGGTATTT-TGGTAATTTTTA-AAA-TC
* *
94826548 AAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTTTGGTAA-TTTTAAAATT
1 AAGGGTATTTCAGTAATTTTGTAAA-CAAGGGTATTTTGGTAATTTTTAAAATC
* * *** *
94826601 GAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAATTTT
1 AAGGGTATTTCAGTAATTTTGTAAACAAG-GGTATTTTGGTAATTTT
94826648 ACAAACTAGG
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
52 3 0.03
53 34 0.40
54 6 0.07
55 6 0.07
56 37 0.43
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (53 bp):
AAGGGTATTTCAGTAATTTTGTAAACAAGGGTATTTTGGTAATTTTTAAAATC
Found at i:94826712 original size:27 final size:27
Alignment explanation
Indices: 94826577--94826705 Score: 113
Period size: 27 Copynumber: 4.8 Consensus size: 27
94826567 TGTAAATCAA
* * *
94826577 GGGTATTTTGGTAATTTTA-AAA-TTG
1 GGGTATTTCGGTAATTTCACAAACTAG
94826602 AGGGTATTTCGGTAATTTCACAAACTAG
1 -GGGTATTTCGGTAATTTCACAAACTAG
* * *
94826630 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACTAG
* **
94826657 GGGTATTTTGGTAATTCTGC-CCTA-TAG
1 GGGTATTTCGGTAATT-T-CACAAACTAG
*
94826684 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCGGTAATTTCACAA
94826706 TCAAGGGTAA
Statistics
Matches: 84, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
25 1 0.01
26 19 0.23
27 59 0.70
28 5 0.06
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTCACAAACTAG
Found at i:94826734 original size:27 final size:27
Alignment explanation
Indices: 94826704--94826788 Score: 118
Period size: 27 Copynumber: 3.1 Consensus size: 27
94826694 GTAATTTCAC
94826704 AATCAAGGGTAAAAC-GATAATTTTGTA
1 AATCAAGGGTAAAACAG-TAATTTTGTA
*
94826731 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTTTGTA
* * *
94826758 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTTTGTA
94826785 AATC
1 AATC
94826789 GAGCGTACTT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTTTGTA
Found at i:94829142 original size:31 final size:31
Alignment explanation
Indices: 94829104--94829182 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
94829094 TTTAACGGTT
94829104 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
94829135 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
94829166 ATTGGGCCGAACCCTTT
1 ACTGGGCCGAAGCCTTT
94829183 ACTGTAAATG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:94829256 original size:42 final size:42
Alignment explanation
Indices: 94829209--94829297 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
94829199 CCCTTAGACT
* ** *
94829209 CATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCC
1 CATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCC
94829251 CATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCC
1 CATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCC
94829293 CATTT
1 CATTT
94829298 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.30
Consensus pattern (42 bp):
CATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCC
Found at i:94829519 original size:26 final size:26
Alignment explanation
Indices: 94829442--94829590 Score: 203
Period size: 26 Copynumber: 5.8 Consensus size: 26
94829432 CCTCTTTAAT
*
94829442 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
94829467 AACTGGGGCA-AAGCCCTTCTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
94829492 AACTAGGGCATAAGCCATTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
94829518 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* *
94829544 AACTGGGGCATAGGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
94829570 AACTGGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCCTTTT
94829591 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 31 0.29
26 77 0.71
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:94829553 original size:52 final size:52
Alignment explanation
Indices: 94829442--94829590 Score: 230
Period size: 52 Copynumber: 2.9 Consensus size: 52
94829432 CCTCTTTAAT
*
94829442 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTCTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* * *
94829492 AACTAGGGCATAAGCCATTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
94829544 AACTGGGGCATAGGCCCTTTTCGGTAAACTGGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
94829591 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
50 9 0.10
51 23 0.26
52 56 0.64
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:94830422 original size:27 final size:26
Alignment explanation
Indices: 94830392--94830469 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
94830382 GGGCATAATC
94830392 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
*
94830419 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
* *
94830446 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-CAGGGGTATT
94830470 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 5 0.12
27 35 0.81
28 3 0.07
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:94830615 original size:56 final size:54
Alignment explanation
Indices: 94830514--94830670 Score: 158
Period size: 56 Copynumber: 2.9 Consensus size: 54
94830504 ATCTACAAAC
* *
94830514 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAA-CAAGGGTATTT-TGGTAATTTTTA-AAAGT
* *
94830570 CAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTTTGGTAA-TTTTAAAATT
1 CAAGGGTATTTCAGTAATTTTGTAAA-CAAGGGTATTTTGGTAATTTTTAAAAGT
* * *** *
94830624 GAA-GGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAATTTT
1 CAAGGGTATTTCAGTAATTTTGTAAACAAG-GGTATTTTGGTAATTTT
94830671 ACAAACTAGG
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
52 3 0.03
53 31 0.36
54 9 0.10
55 6 0.07
56 38 0.44
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTTGTAAACAAGGGTATTTTGGTAATTTTTAAAAGT
Found at i:94830628 original size:27 final size:27
Alignment explanation
Indices: 94830488--94830695 Score: 140
Period size: 27 Copynumber: 7.7 Consensus size: 27
94830478 TTCATCCTAC
* * * *
94830488 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
94830515 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
94830542 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
**
94830570 CAAGGGTATTTCT-GTAATTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTACAAACT
*
94830597 CAAGGGTATTTTGGTAATTTTA-AAATT
1 -AAGGGTATTTTGGTAATTTTACAAACT
* *
94830624 GAA-GGTATTTCGGTAATTTCACAAACT
1 -AAGGGTATTTTGGTAATTTTACAAACT
94830651 -AGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
94830678 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
94830696 CTACCATATA
Statistics
Matches: 146, Mismatches: 26, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.01
26 20 0.14
27 96 0.66
28 15 0.10
29 14 0.10
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:94830707 original size:27 final size:27
Alignment explanation
Indices: 94830600--94830714 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
94830590 TGTAAATCAA
* *
94830600 GGGTATTTTGGTAATTTTA-AAA-TTG
1 GGGTATTTTGGTAATTCTACAAACTAG
* *
94830625 AAGGTATTTCGGTAATT-TCACAAACTAG
1 -GGGTATTTTGGTAATTCT-ACAAACTAG
* *
94830653 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTCTACAAACTAG
*
94830680 GGGTATTTTGGTAATTCTACCATA-TAG
1 GGGTATTTTGGTAATTCTA-CAAACTAG
94830707 GGGTATTT
1 GGGTATTT
94830715 CAGTAATTTC
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
25 1 0.01
26 15 0.20
27 54 0.71
28 6 0.08
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTCTACAAACTAG
Found at i:94830735 original size:27 final size:26
Alignment explanation
Indices: 94830600--94830735 Score: 105
Period size: 27 Copynumber: 5.1 Consensus size: 26
94830590 TGTAAATCAA
* *
94830600 GGGTATTTTGGTAATTTTAAAATT-G
1 GGGTATTTTGGTAATTTCACAATTAG
* * *
94830625 AAGGTATTTCGGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTCAC-AATTAG
* * *
94830653 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTCAC-AATTAG
*
94830680 GGGTATTTTGGTAA-TTCTACCATATAG
1 GGGTATTTTGGTAATTTC-ACAAT-TAG
**
94830707 GGGTATTTCAGTAATTTCACAATTGAG
1 GGGTATTTTGGTAATTTCACAATT-AG
94830734 GG
1 GG
94830736 TTAAACGATA
Statistics
Matches: 89, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
26 20 0.22
27 65 0.73
28 4 0.04
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTCACAATTAG
Found at i:94830761 original size:27 final size:27
Alignment explanation
Indices: 94830731--94830814 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
94830721 TTTCACAATT
*
94830731 GAGGGTTAAAC-GATAATTTTGTAAATC
1 GAGGGTTAAACAG-TAATTATGTAAATC
*
94830758 GA-GGTTAAAATAGTAATTATGTAAATC
1 GAGGGTT-AAACAGTAATTATGTAAATC
* * * *
94830785 AAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTTAAACAGTAATTATGTAAATC
94830812 GAG
1 GAG
94830815 CATACTTTGG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.09
27 38 0.83
28 4 0.09
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (27 bp):
GAGGGTTAAACAGTAATTATGTAAATC
Found at i:94843457 original size:40 final size:38
Alignment explanation
Indices: 94843420--94843590 Score: 209
Period size: 39 Copynumber: 4.3 Consensus size: 38
94843410 GCTACTCGTT
*
94843420 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGTT-TAGTAACTCGCA
* *
94843460 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGG-TTTAGTAACTCGCA
* *
94843500 CAAATGCCTTCGGGCTTAGCCCAGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCC-G-GTTTAGTAACTCGCA
* *
94843539 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGG-TTTAGTAACTCGCA
94843578 CAAATGCCTTCGG
1 CAAATGCCTTCGG
94843591 ATCTTAGTCT
Statistics
Matches: 117, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
38 3 0.03
39 61 0.52
40 51 0.44
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTTAGTAACTCGCA
Found at i:94843542 original size:39 final size:40
Alignment explanation
Indices: 94843420--94843641 Score: 224
Period size: 40 Copynumber: 5.6 Consensus size: 40
94843410 GCTACTCGTT
* *
94843420 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATT-TAGTAACTCGCA
* * *
94843460 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
*
94843500 CAAATGCCTTCGGG-CTTAGCCCAGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTTAGTAACTCGCA
*
94843539 CAAATGCCTTCGGG-CTTAGCCCGGAA-TTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTTAGTAACTCGCA
* * * * * * *
94843578 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGAATTTAGTAAC-TCGCA
94843619 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
94843642 GACATCATTC
Statistics
Matches: 155, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
38 4 0.03
39 64 0.41
40 74 0.48
41 13 0.08
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
Found at i:94843584 original size:78 final size:80
Alignment explanation
Indices: 94843420--94843590 Score: 233
Period size: 78 Copynumber: 2.2 Consensus size: 80
94843410 GCTACTCGTT
* *
94843420 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
94843485 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * *
94843500 CAAATGCCTTCGGG-CTTAGCCCAGAATT-T-GTATCTCGCACAAATGCCTTCGGG-CTTAGCCC
1 CAAATGCCTTCGGGACATAGCCC-G-ATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
*
94843561 GGAATTAGTATCTCGCA
64 GGAATTAGTAACTCGCA
94843578 CAAATGCCTTCGG
1 CAAATGCCTTCGG
94843591 ATCTTAGTCT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
78 35 0.43
79 29 0.35
80 16 0.20
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:94843627 original size:118 final size:120
Alignment explanation
Indices: 94843420--94843640 Score: 281
Period size: 118 Copynumber: 1.9 Consensus size: 120
94843410 GCTACTCGTT
* *
94843420 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
94843485 ATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAGAATTTGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGAATTTGTATCTCGCA
* * ** *
94843539 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCT
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
94843601 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
64 GGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCC
94843641 GGACATCATT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
117 4 0.05
118 53 0.61
119 30 0.34
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGAATTTGTATCTCGCA
Found at i:94851590 original size:40 final size:40
Alignment explanation
Indices: 94851531--94851762 Score: 308
Period size: 40 Copynumber: 5.8 Consensus size: 40
94851521 TGGATGATAA
* * *
94851531 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACAAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
94851571 TCGGGCTAAGTCCCAAAGGCA-TTGTTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAATT
*
94851611 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
**
94851651 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
**
94851691 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
94851731 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
94851763 AGCTATATCC
Statistics
Matches: 174, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 7 0.04
40 162 0.93
41 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:94851744 original size:120 final size:120
Alignment explanation
Indices: 94851531--94851788 Score: 337
Period size: 120 Copynumber: 2.2 Consensus size: 120
94851521 TGGATGATAA
* * *
94851531 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACAAATTTCGGGCTAAGTCCCAAAGGCATTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACAAATTCCGGGCTAAGTCCCAAAGGCATTGT
** * * *
94851596 TGCGAGTTACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
66 TGCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
* *
94851651 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACTAATTCCGGGCTAAGTCCCGAAGGCATT-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AACTGACAAATTCCGGGCTAAGTCCCAAAGGCATTG
94851714 TGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
65 T-TGCGAACTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
* *
94851771 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
94851789 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
119 19 0.16
120 101 0.83
121 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACAAATTCCGGGCTAAGTCCCAAAGGCATTGT
TGCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
Found at i:94851769 original size:40 final size:40
Alignment explanation
Indices: 94851531--94851788 Score: 298
Period size: 40 Copynumber: 6.5 Consensus size: 40
94851521 TGGATGATAA
* *
94851531 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-AAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATT
* *
94851571 TCGGGCTAAGTCCCAAAGGCA-TTGTTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAG-TACTATATT
*
94851611 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATT
*
94851651 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATATT
*
94851691 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATA-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATATT
* *
94851731 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATA-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATT
* *
94851771 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
94851789 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
39 21 0.11
40 169 0.85
41 8 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATT
Found at i:94857013 original size:17 final size:18
Alignment explanation
Indices: 94856991--94857029 Score: 71
Period size: 17 Copynumber: 2.2 Consensus size: 18
94856981 AAGGACCTCT
94856991 AATTAATAATCCATA-TC
1 AATTAATAATCCATATTC
94857008 AATTAATAATCCATATTC
1 AATTAATAATCCATATTC
94857026 AATT
1 AATT
94857030 TAGTCCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTAATAATCCATATTC
Found at i:94861774 original size:71 final size:67
Alignment explanation
Indices: 94861697--94861838 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
94861687 TCACCAGATA
* * *
94861697 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
94861762 GGCTGC
62 GGCTGC
* * *
94861768 CAGATATTGTGACGAAGTCTCCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
94861833 GC
66 GC
94861835 CAGA
1 CAGA
94861839 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 41 0.63
71 24 0.37
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:94864143 original size:19 final size:20
Alignment explanation
Indices: 94864114--94864160 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
94864104 ACTTGTAAGT
94864114 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
*
94864134 ATAT-TATGTGAATATTTTG
1 ATATATATGTGAATAATTTG
94864153 ATGATATA
1 AT-ATATA
94864161 ACATGTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 16 0.67
20 6 0.25
21 2 0.08
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:94864590 original size:50 final size:51
Alignment explanation
Indices: 94864511--94864750 Score: 240
Period size: 50 Copynumber: 4.8 Consensus size: 51
94864501 GTTGTGAGAA
* ** * * *
94864511 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGATTGATAGAT
* * * *
94864561 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGATTGATAGAT
* * * *
94864611 CGCATGTGTAGTACTAAGTGCAAGCTAGTATGTGTACCCGAAAACTT--T-GAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CC-AAGA-TTGATAGAT
* **
94864662 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAA-ATTGATAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGATTGATAGAT
* *
94864712 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
94864751 GAAAGCTTCG
Statistics
Matches: 156, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
47 2 0.01
48 1 0.01
49 3 0.02
50 112 0.72
51 32 0.21
52 2 0.01
53 2 0.01
54 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGATTGATAGAT
Found at i:94864687 original size:101 final size:101
Alignment explanation
Indices: 94864560--94864754 Score: 318
Period size: 101 Copynumber: 1.9 Consensus size: 101
94864550 GATGGTTAGG
* * * *
94864560 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGATAGATCGCATGTGTAGTAC
* * *
94864625 TAAGTGCAAGCTAGTATGTGTACCCGAAAACTTTGA
66 TAAGTGCAAGCTACTATGCGTACCAGAAAACTTTGA
94864661 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGATAGATCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGATAGATCGCATGTGTAGTAC
*
94864726 TAAGTGCAGGCTACTATGCGTACCAGAAA
66 TAAGTGCAAGCTACTATGCGTACCAGAAA
94864755 GCTTCGGTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 86 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGATAGATCGCATGTGTAGTAC
TAAGTGCAAGCTACTATGCGTACCAGAAAACTTTGA
Found at i:94871400 original size:50 final size:50
Alignment explanation
Indices: 94871325--94871553 Score: 255
Period size: 50 Copynumber: 4.6 Consensus size: 50
94871315 ATTGTGAGAA
* * * *** * *
94871325 CACATGTGAAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
94871375 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
* * * * * * *
94871425 CGCATGTGTAGTACTAAGTGCAGGCTAATATGCGTACTC-GA-TAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTGA--TAGGT
*
94871476 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
**
94871526 TGCATGTGTAGTACTAAGTGCAGGCTAC
1 CACATGTGTAGTACTAAGTGCAGGCTAC
94871554 CATGCATACC
Statistics
Matches: 148, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
49 2 0.01
50 106 0.72
51 38 0.26
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
Found at i:94871574 original size:101 final size:101
Alignment explanation
Indices: 94871374--94871562 Score: 333
Period size: 101 Copynumber: 1.9 Consensus size: 101
94871364 GATGGTTAGG
94871374 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* *
94871439 TAAGTGCAGGCTAATATGCGTACTCGATAACTTCGA
66 TAAGTGCAGGCTAACATGCATACTCGATAACTTCGA
* *
94871475 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
*
94871540 TAAGTGCAGGCTACCATGCATAC
66 TAAGTGCAGGCTAACATGCATAC
94871563 CAGAAAGCTT
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 83 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTAACATGCATACTCGATAACTTCGA
Found at i:94874346 original size:45 final size:45
Alignment explanation
Indices: 94874277--94874364 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
94874267 AAACATGTGT
94874277 CACATACATCATGAACTCAAACCACAACTCAATGAGTTCAGATGC
1 CACATACATCATGAACTCAAACCACAACTCAATGAGTTCAGATGC
* *
94874322 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 CACATACATCATGAACTCAAACCACAACTCAATGAGTTCAGAT
94874365 CGTAAATGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.40, C:0.27, G:0.11, T:0.22
Consensus pattern (45 bp):
CACATACATCATGAACTCAAACCACAACTCAATGAGTTCAGATGC
Found at i:94876487 original size:33 final size:34
Alignment explanation
Indices: 94876416--94876488 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
94876406 GTATGCATCT
94876416 CTGATACTATACTGAAATTGGGCTAAGGCCCACA
1 CTGATACTATACTGAAATTGGGCTAAGGCCCACA
* *
94876450 CTGATACTGTTACTGTAA-TGGGCTAAGG-CCACA
1 CTGATACT-ATACTGAAATTGGGCTAAGGCCCACA
94876483 CTGATA
1 CTGATA
94876489 TTGCCACTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 11 0.31
34 18 0.50
35 7 0.19
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
CTGATACTATACTGAAATTGGGCTAAGGCCCACA
Found at i:94876506 original size:33 final size:33
Alignment explanation
Indices: 94876434--94876512 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
94876424 ATACTGAAAT
**
94876434 TGGGCTAAGGCCCACACTGATACTGTTACTGTAA
1 TGGGCTAAGG-CCACACTGATACTGCCACTGTAA
*
94876468 TGGGCTAAGGCCACACTGATATTGCCACTGATAA
1 TGGGCTAAGGCCACACTGATACTGCCACTG-TAA
*
94876502 -GGGCTTAGGCC
1 TGGGCTAAGGCC
94876513 TAGACTGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.68
34 13 0.32
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (33 bp):
TGGGCTAAGGCCACACTGATACTGCCACTGTAA
Found at i:94880488 original size:40 final size:40
Alignment explanation
Indices: 94880409--94880585 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
94880399 CGGATCATAA
* * * *
94880409 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
94880449 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
94880489 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
94880529 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
94880569 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
94880586 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 100 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:94880855 original size:22 final size:22
Alignment explanation
Indices: 94880815--94880856 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
94880805 GAATGTGCGT
*
94880815 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
94880837 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
94880857 TCAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:94884752 original size:40 final size:40
Alignment explanation
Indices: 94884673--94884889 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
94884663 CGGATGATAA
* * *
94884673 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
94884713 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
94884753 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
94884793 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
94884833 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
94884873 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
94884890 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 15 0.09
40 142 0.89
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:94885157 original size:22 final size:22
Alignment explanation
Indices: 94885117--94885158 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
94885107 GAATGTGCAT
*
94885117 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
94885139 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
94885159 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:94889464 original size:45 final size:45
Alignment explanation
Indices: 94889388--94889474 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
94889378 AAACACGTGT
* * *
94889388 CACATACATCATGAAATCATACCATAGCTCAATGAGTTCAGAAGC
1 CACATACATCATGAAATCAGACCACAACTCAATGAGTTCAGAAGC
* * *
94889433 CACATATATCATGAACTCAGACTACAACTCAATGAGTTCAGA
1 CACATACATCATGAAATCAGACCACAACTCAATGAGTTCAGA
94889475 TCGCATAGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.23
Consensus pattern (45 bp):
CACATACATCATGAAATCAGACCACAACTCAATGAGTTCAGAAGC
Found at i:94902092 original size:21 final size:20
Alignment explanation
Indices: 94902068--94902138 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 20
94902058 TATCATGAAC
94902068 TCAGACCACAACTCAGTGAGT
1 TCAGACCACAACTCA-TGAGT
* **
94902089 TCAGATGCCACATATATCATGAAC
1 TCAGA--CCACA-A-CTCATGAGT
94902113 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTC-ATGAGT
94902134 TCAGA
1 TCAGA
94902139 TCGCATAGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
20 2 0.05
21 15 0.38
22 5 0.13
23 5 0.13
24 9 0.23
25 3 0.08
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (20 bp):
TCAGACCACAACTCATGAGT
Found at i:94902102 original size:45 final size:45
Alignment explanation
Indices: 94902052--94902139 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
94902042 AAACATGTGT
*
94902052 CACATATATCATGAACTCAGACCACAACTCAGTGAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
94902097 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
94902140 CGCATAGTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.23
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:94904397 original size:43 final size:42
Alignment explanation
Indices: 94904313--94904482 Score: 134
Period size: 43 Copynumber: 4.0 Consensus size: 42
94904303 TCTGAGACAT
* * *
94904313 CGTGTAAGACCATGTCTGAGACA-CAGGCCTCG-ATTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATC-GGCATTGTATT--GATTTA
* *
94904356 CGTATAAGACCATGTCTGGGACATCGACATTGTATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACATCGGCATTGTAT-TGATTTA
** *
94904398 CGTGTAAGATCC-TGTCTGGGACAGAGGCATTGATATTGAATTA
1 CGTGTAAGA-CCATGTCTGGGACATCGGCATTG-TATTGATTTA
* * * *
94904441 CATGTAAGACCACGTCCGGGACGTCGGCATTGTACTTG-TTTA
1 CGTGTAAGACCATGTCTGGGACATCGGCATTGTA-TTGATTTA
94904483 TGAGCATCTG
Statistics
Matches: 102, Mismatches: 17, Indels: 17
0.75 0.12 0.12
Matches are distributed among these distances:
42 37 0.36
43 61 0.60
44 3 0.03
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATCGGCATTGTATTGATTTA
Found at i:94906537 original size:18 final size:18
Alignment explanation
Indices: 94906510--94906562 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
94906500 TACAGTTTTA
94906510 TAATTCATATACGTTGTC
1 TAATTCATATACGTTGTC
** *
94906528 TAATT-A-ATATTTTCTC
1 TAATTCATATACGTTGTC
94906544 TAATTCATATACGTTGTC
1 TAATTCATATACGTTGTC
94906562 T
1 T
94906563 TACTTTCATA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
16 12 0.44
17 2 0.07
18 13 0.48
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (18 bp):
TAATTCATATACGTTGTC
Found at i:94907851 original size:14 final size:14
Alignment explanation
Indices: 94907832--94907862 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
94907822 ACGAGATAAT
94907832 AAATAAAATAGAAG
1 AAATAAAATAGAAG
94907846 AAATAAAATAGAAG
1 AAATAAAATAGAAG
94907860 AAA
1 AAA
94907863 CAAGCATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAATAAAATAGAAG
Found at i:94909904 original size:24 final size:22
Alignment explanation
Indices: 94909840--94909910 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 22
94909830 AAACATGTGT
94909840 CACATATATCATGAACTCAGAC
1 CACATATATCATGAACTCAGAC
* * **
94909862 TACA-A-CTCAATGAGTTCAGATGC
1 CACATATATC-ATGAACTCAGA--C
94909885 CACATATATCATGAACTCAGAC
1 CACATATATCATGAACTCAGAC
94909907 CACA
1 CACA
94909911 ACTTAATGAG
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 2 0.06
21 10 0.28
22 8 0.22
23 4 0.11
24 10 0.28
25 2 0.06
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23
Consensus pattern (22 bp):
CACATATATCATGAACTCAGAC
Found at i:94909904 original size:45 final size:45
Alignment explanation
Indices: 94909840--94909927 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
94909830 AAACATGTGT
*
94909840 CACATATATCATGAACTCAGACTACAACTCAATGAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
*
94909885 CACATATATCATGAACTCAGACCACAACTTAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
94909928 CGCATAGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:94909925 original size:21 final size:21
Alignment explanation
Indices: 94909856--94909926 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
94909846 TATCATGAAC
* *
94909856 TCAGACTACAACTCAATGAGT
1 TCAGACCACAACTTAATGAGT
* **
94909877 TCAGATGCCACATA-TATCATGAAC
1 TCAGA--CCACA-ACT-TAATGAGT
94909901 TCAGACCACAACTTAATGAGT
1 TCAGACCACAACTTAATGAGT
94909922 TCAGA
1 TCAGA
94909927 TCGCATAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
21 16 0.43
22 6 0.16
23 5 0.14
24 10 0.27
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (21 bp):
TCAGACCACAACTTAATGAGT
Found at i:94916949 original size:45 final size:45
Alignment explanation
Indices: 94916899--94916986 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
94916889 AAACATGTGT
*
94916899 CACATATATCATGAACTCAGACCATGACTCAATGAGTTCAGATGC
1 CACATATATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
*
94916944 CACATATATCATGAACTCAGACCATAACTTAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCATAACTCAATGAGTTCAGAT
94916987 CGCATAATTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.26
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
Found at i:94932112 original size:39 final size:39
Alignment explanation
Indices: 94931973--94932158 Score: 182
Period size: 39 Copynumber: 4.8 Consensus size: 39
94931963 ACTTGAAACC
** *
94931973 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGC-GGACCTTAAGCCCGGATAT
* * * * *
94932012 AATACCAGCTCAAAGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCACATAGCCTGC-GGACCTTAAGCCCGGATAT
* * *
94932051 ATTTCCAGCACGTAGCCTGCGGACCTTAAGCCCGGTTAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGATAT
* *
94932090 AATTCTAGCACATAGCCTGCGGACCTTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGATAT
*
94932129 AATTCCAGCACATA-CCTTGCGGACCCTAAG
1 AATTCCAGCACATAGCC-TGCGGACCTTAAG
94932159 TCTGGATAAA
Statistics
Matches: 122, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
38 20 0.16
39 102 0.84
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGATAT
Found at i:94935246 original size:21 final size:21
Alignment explanation
Indices: 94935222--94935291 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
94935212 CACATATATC
94935222 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** *
94935243 ATGAGTTCAGATGCCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
*
94935267 ATGAACTCAGACCATAACTCA
1 ATGAACTCAGACCACAACTCA
94935288 ATGA
1 ATGA
94935292 GTTCATATCA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 2 0.05
21 14 0.38
22 4 0.11
23 5 0.14
24 10 0.27
25 2 0.05
ACGTcount: A:0.40, C:0.26, G:0.13, T:0.21
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:94935276 original size:24 final size:22
Alignment explanation
Indices: 94935212--94935280 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
94935202 AAACATGTGT
94935212 CACATATATCATGAACTCAGAC
1 CACATATATCATGAACTCAGAC
* **
94935234 CACA-A-CTCAATGAGTTCAGATGC
1 CACATATATC-ATGAACTCAGA--C
94935257 CACATATATCATGAACTCAGAC
1 CACATATATCATGAACTCAGAC
94935279 CA
1 CA
94935281 TAACTCAATG
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
20 2 0.06
21 10 0.28
22 7 0.19
23 5 0.14
24 10 0.28
25 2 0.06
ACGTcount: A:0.39, C:0.28, G:0.12, T:0.22
Consensus pattern (22 bp):
CACATATATCATGAACTCAGAC
Found at i:94940066 original size:45 final size:45
Alignment explanation
Indices: 94940002--94940089 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
94939992 AAACATGTGT
* * *
94940002 CACATATGTCATGAACTCAGAGCACAACTCAATAAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATAAGTGCAGATGC
*
94940047 CACATATATCATGAACTCAGACCACAACTCAATGAGTGCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATAAGTGCAGAT
94940090 CGGATAGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.39, C:0.25, G:0.15, T:0.22
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATAAGTGCAGATGC
Found at i:94942363 original size:18 final size:18
Alignment explanation
Indices: 94942340--94942379 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
94942330 CTTGGCCCTT
* *
94942340 TGCAGTAACAGTATACAG
1 TGCAGTAACAGCAAACAG
94942358 TGCAGTAACAGCAAACAG
1 TGCAGTAACAGCAAACAG
94942376 TGCA
1 TGCA
94942380 ATAGCAGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (18 bp):
TGCAGTAACAGCAAACAG
Found at i:94943133 original size:27 final size:27
Alignment explanation
Indices: 94942777--94943126 Score: 365
Period size: 27 Copynumber: 13.0 Consensus size: 27
94942767 AGGGCAAATT
* *
94942777 AGTCATTTTACCTTACAGAGGTATTAT-
1 AGTCATTTTACCTTATAGGGGTATT-TC
94942804 AGTCATTTTACCTTATAGGGGTATTAT-
1 AGTCATTTTACCTTATAGGGGTATT-TC
* * *
94942831 AGTCATTTTACCCTACAGGGGTATTAC
1 AGTCATTTTACCTTATAGGGGTATTTC
* *
94942858 AGTCATTTTACCCTATAGGGGTATTAC
1 AGTCATTTTACCTTATAGGGGTATTTC
94942885 AGTCATTTTACCTTATAGGGGTATTTC
1 AGTCATTTTACCTTATAGGGGTATTTC
* *
94942912 AGTCATTTTACCTGATAGGGGTATTTT
1 AGTCATTTTACCTTATAGGGGTATTTC
* * * *
94942939 GGTCATGTTATCTTATGGGGGTATTTC
1 AGTCATTTTACCTTATAGGGGTATTTC
* *
94942966 AATCATTTTACCCTATAGGGGTATTTC
1 AGTCATTTTACCTTATAGGGGTATTTC
*
94942993 AGTCATTTTACCCTAT-GAGGGTATTTC
1 AGTCATTTTACCTTATAG-GGGTATTTC
*
94943020 -GATCATTTTATCC-TATAGGGGTATTTT
1 AG-TCATTTTA-CCTTATAGGGGTATTTC
* *
94943047 GGTCATTTTATCC-TATGGGGGTATTTC
1 AGTCATTTTA-CCTTATAGGGGTATTTC
* *
94943074 -GATCATTTTACCCTAT-GGGAGTATTTT
1 AG-TCATTTTACCTTATAGGG-GTATTTC
* *
94943101 GGTCATTTTACCTTATGGGGGTATTT
1 AGTCATTTTACCTTATAGGGGTATTT
94943127 TGGTCATCAT
Statistics
Matches: 284, Mismatches: 28, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
26 8 0.03
27 268 0.94
28 8 0.03
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (27 bp):
AGTCATTTTACCTTATAGGGGTATTTC
Found at i:94943521 original size:81 final size:81
Alignment explanation
Indices: 94943382--94943545 Score: 224
Period size: 81 Copynumber: 2.0 Consensus size: 81
94943372 CTACTCCATT
*
94943382 ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATGATTTTATCC-T
1 ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTA-CCTT
94943446 ATAGGGGTATTTTGGTC
65 ATAGGGGTATTTTGGTC
* * * ** *
94943463 ATTTTATCCTATGGGGGTATTTC-GATCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCTT
1 ATTTTACCCTATAGGGGTATTTCAG-TCATTTTACCCTATGAGGGTATTAAGATCATTTTACCTT
*
94943527 ATGGGGGTATTTTGGTC
65 ATAGGGGTATTTTGGTC
94943544 AT
1 AT
94943546 CATTTCGGCC
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 3 0.04
81 70 0.96
ACGTcount: A:0.20, C:0.13, G:0.23, T:0.44
Consensus pattern (81 bp):
ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTACCTTA
TAGGGGTATTTTGGTC
Found at i:94943539 original size:27 final size:27
Alignment explanation
Indices: 94943382--94943545 Score: 202
Period size: 27 Copynumber: 6.1 Consensus size: 27
94943372 CTACTCCATT
* **
94943382 ATTTTACCCTATAGGGGTATTTCAGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
* ** * *
94943409 ATTTTACCCTATGAGGGTATTAAGATG
1 ATTTTACCCTATGGGGGTATTTTGGTC
* *
94943436 ATTTTATCCTATAGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
* * *
94943463 ATTTTATCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTTGGTC
94943490 ATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
*
94943517 ATTTTACCTTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
94943544 AT
1 AT
94943546 CATTTCGGCC
Statistics
Matches: 116, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.20, C:0.13, G:0.23, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTTGGTC
Found at i:94943734 original size:412 final size:412
Alignment explanation
Indices: 94942970--94943794 Score: 1578
Period size: 412 Copynumber: 2.0 Consensus size: 412
94942960 TATTTCAATC
**
94942970 ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTCGATCATTTTATCCTA
1 ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTATCCTA
94943035 TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGAGTATTT
66 TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGAGTATTT
94943100 TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
131 TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
*
94943165 AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATTCCCACGTTTATGTATTCAGTTTAC
196 AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATGCCCACGTTTATGTATTCAGTTTAC
94943230 CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
261 CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
94943295 ATAATGGCAGTGTGATTACACACTTGTTTGCGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
326 ATAATGGCAGTGTGATTACACACTTGTTTGCGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
94943360 CATTCGATCAAACTACTCCATT
391 CATTCGATCAAACTACTCCATT
*
94943382 ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATGATTTTATCCTA
1 ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTATCCTA
*
94943447 TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTT
66 TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGAGTATTT
94943512 TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
131 TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
* *
94943577 AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATGCCCATGTTTATGTATTCGGTTTAC
196 AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATGCCCACGTTTATGTATTCAGTTTAC
94943642 CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
261 CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
*
94943707 ATAATGGCAGTGTGATTACACACTTGTTTGTGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
326 ATAATGGCAGTGTGATTACACACTTGTTTGCGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
94943772 CATTCGATCAAACTACTCCATT
391 CATTCGATCAAACTACTCCATT
94943794 A
1 A
94943795 ATCAACTGAT
Statistics
Matches: 405, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
412 405 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (412 bp):
ATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTAAGATCATTTTATCCTA
TAGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATGGGAGTATTT
TGGTCATTTTACCTTATGGGGGTATTTTGGTCATCATTTCGGCCCAACATATCCCAAAATGGCCT
AAACCCATGAGATCGCTCATGGCGGCCTCTACGATTAAATGCCCACGTTTATGTATTCAGTTTAC
CACACGAGCGAGCGCACGCTCGTGTAGTGTCGATGGTCACCTAATCCGGCTTTTGTCGATTTACG
ATAATGGCAGTGTGATTACACACTTGTTTGCGAAAGAGCGCGCAACCCACGAACACCAAAACCTA
CATTCGATCAAACTACTCCATT
Found at i:94945904 original size:46 final size:46
Alignment explanation
Indices: 94945851--94946026 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
94945841 TATTTGGGCA
*
94945851 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* * * *
94945897 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C-AAGCG
* * * *
94945944 TCCGAGCTCATTGAGTTGAGTCCGAGTTTACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* * * * *
94945990 CCCGAGCTCGTTGAGTTGAGTTCGGGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94946027 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
44 3 0.03
46 62 0.59
47 29 0.28
49 3 0.03
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
Found at i:94946006 original size:93 final size:93
Alignment explanation
Indices: 94945847--94946019 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
94945837 GGGATATTTG
* * * *
94945847 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
94945912 TTGAGTCCGAGTTCGTAAGATGTAACTA
66 TTGAGTCCGAGTTCGTAAGATGTAACTA
* * *
94945940 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTTACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
* *
94946005 TTGAGTTCGGGTTCG
66 TTGAGTCCGAGTTCG
94946020 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTAAGATGTAACTA
Found at i:94946383 original size:23 final size:23
Alignment explanation
Indices: 94946325--94946373 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
94946315 TATGGTTATG
94946325 TTACTTGCTATTTGCATGTGAAC
1 TTACTTGCTATTTGCATGTGAAC
94946348 TTACTTGCTATTTGCATGTGAAC
1 TTACTTGCTATTTGCATGTGAAC
94946371 TTA
1 TTA
94946374 TTAAGCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.45
Consensus pattern (23 bp):
TTACTTGCTATTTGCATGTGAAC
Found at i:94949009 original size:15 final size:15
Alignment explanation
Indices: 94948972--94949051 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
94948962 GTATCTTGGG
*
94948972 TTTCTTTATCCTGGAT
1 TTTCTTTATTCTGG-T
*
94948988 CTT-TTTATTCTGGT
1 TTTCTTTATTCTGGT
*
94949002 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGT
* *
94949017 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGT
94949032 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGT
94949046 TTTCTT
1 TTTCTT
94949052 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
14 13 0.25
15 36 0.68
16 4 0.08
ACGTcount: A:0.09, C:0.16, G:0.14, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGT
Found at i:94949036 original size:30 final size:30
Alignment explanation
Indices: 94948963--94949050 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
94948953 CATAGTATCG
* * *
94948963 TATCTTGGGTTTCTTTATCCTGGATCTT-TT
1 TATCTTGGATTTCTTTATTCTGGAT-TTCTC
* *
94948993 TAT-TCTGGTTTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
94949023 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
94949051 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 10 0.20
30 38 0.78
31 1 0.02
ACGTcount: A:0.09, C:0.16, G:0.16, T:0.59
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:94951489 original size:46 final size:46
Alignment explanation
Indices: 94951436--94951608 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
94951426 TTGAGCATCC
94951436 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
* * * *
94951482 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCAT-T
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCGTCT
* * * * *
94951528 CGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
* * *
94951575 GAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94951609 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 61 0.60
47 29 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
Found at i:94955916 original size:11 final size:11
Alignment explanation
Indices: 94955900--94955925 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
94955890 TTTGGAAGGT
94955900 TTAATGTTAGA
1 TTAATGTTAGA
94955911 TTAATGTTAGA
1 TTAATGTTAGA
94955922 TTAA
1 TTAA
94955926 ATTGAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (11 bp):
TTAATGTTAGA
Found at i:94968933 original size:53 final size:53
Alignment explanation
Indices: 94968853--94969046 Score: 149
Period size: 53 Copynumber: 3.6 Consensus size: 53
94968843 TGCCTTTTTA
* * * * *
94968853 AACTTACCATTGCCATGTCTTGACATGGTTTTACGTAGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGCCTTATG
* * *
94968906 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGCCTTAT-G
** * * * * * * *
94968960 TAGTTTATCAATGCAATGTCTTGACATGGTCTTACAT--GATTTCCTTGCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGA--TCCTTGCCTTAT-G
* * *
94969015 AACTTACCAATGCCATGCCTTGGCATGGTCTT
1 AACTCACCATTGCCATGCCTTGACATGGTCTT
94969047 CCTTGGTATC
Statistics
Matches: 112, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
53 46 0.41
54 27 0.24
55 39 0.35
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGCCTTATG
Found at i:94971897 original size:48 final size:48
Alignment explanation
Indices: 94971757--94971935 Score: 142
Period size: 47 Copynumber: 3.9 Consensus size: 48
94971747 GGTTATGCAC
* * *
94971757 GATCCCATGTAAGACCATGTTTGGGACATGG-ATTTAGCATCCATATGT
1 GATCCCATGTAAGACCATGTTTAGGACATGGCA-TTGGCATCGATATGT
* ** * * *
94971805 AATATCGTGTAAGACCATAG-CTAGG-CTAT--CA---GCATCGATGTGT
1 GATCCCATGTAAGACCAT-GTTTAGGAC-ATGGCATTGGCATCGATATGT
*
94971848 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTTTAGGACATGGCATTGGCATCGATATGT
* * * *
94971896 GAT-CCATCTAAGACCATATTCAGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTTTAGGACATGGCATTGGCATC
94971936 CTACCATGTG
Statistics
Matches: 101, Mismatches: 20, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
42 1 0.01
43 29 0.29
44 1 0.01
45 2 0.02
47 34 0.34
48 33 0.33
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTTTAGGACATGGCATTGGCATCGATATGT
Found at i:94977816 original size:29 final size:29
Alignment explanation
Indices: 94977752--94977891 Score: 106
Period size: 29 Copynumber: 4.9 Consensus size: 29
94977742 TACATATATG
**
94977752 CATATGGCCCACTT-GGCCC--ATCTTATT
1 CATATGGCCCA-TTAGGCCCAAATCACATT
*
94977779 CATATGGCCCATTAGGCCCAATTCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* * * * * *
94977808 CATCTGGCCTATCAGGCCCAATTCATATA
1 CATATGGCCCATTAGGCCCAAATCACATT
* * * *
94977837 CATTTGGCCTATTAGGCCTAAATCACCTT
1 CATATGGCCCATTAGGCCCAAATCACATT
* * *
94977866 TATATGGCCCGTTAGGCTCAAATCAC
1 CATATGGCCCATTAGGCCCAAATCAC
94977892 CTTATATTCA
Statistics
Matches: 89, Mismatches: 21, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 16 0.18
29 71 0.80
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:94978131 original size:16 final size:15
Alignment explanation
Indices: 94978109--94978144 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
94978099 TGCAGCCAAA
*
94978109 CTTTTGGCTTTTCGG
1 CTTTTGGCATTTCGG
94978124 CATTTTGGCATTTCGG
1 C-TTTTGGCATTTCGG
94978140 CTTTT
1 CTTTT
94978145 CAGCTTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.06, C:0.19, G:0.22, T:0.53
Consensus pattern (15 bp):
CTTTTGGCATTTCGG
Found at i:94988246 original size:40 final size:40
Alignment explanation
Indices: 94988163--94988383 Score: 252
Period size: 40 Copynumber: 5.5 Consensus size: 40
94988153 CCCAAGTAAT
** * *
94988163 CTTCGGGAT-TTAG-CCGGATATAACCACTTGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
94988201 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
94988241 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
94988281 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * * *
94988321 CTTCAGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAATGC
*
94988362 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
94988384 CATTCGAATA
Statistics
Matches: 153, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 96 0.63
41 29 0.19
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:95003392 original size:18 final size:18
Alignment explanation
Indices: 95003371--95003407 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
95003361 ACAATTTTAA
95003371 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
95003389 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
95003407 A
1 A
95003408 ATGTAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:95003514 original size:19 final size:20
Alignment explanation
Indices: 95003490--95003536 Score: 78
Period size: 19 Copynumber: 2.4 Consensus size: 20
95003480 CATCCAAACA
*
95003490 CCAGAAAAGTAAATTA-TTT
1 CCAGAAAAGTAAATCATTTT
95003509 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
95003529 CCAGAAAA
1 CCAGAAAA
95003537 TATTTTACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.26
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:95010097 original size:40 final size:40
Alignment explanation
Indices: 95010031--95010202 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
95010021 GATAACCAGA
* * *
95010031 CTAAGATCCGAAGGCATTCGTGCTAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
* * * * * *
95010071 CTATGTCCCGGAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGG
*
95010111 CTAAGACCCGAAAGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
*
95010151 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
95010190 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
95010203 ATACTTGGGT
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 95 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
Found at i:95010471 original size:22 final size:22
Alignment explanation
Indices: 95010431--95010472 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
95010421 GAATGTGCAT
*
95010431 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
95010453 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
95010473 TCAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:95016175 original size:47 final size:47
Alignment explanation
Indices: 95016106--95016678 Score: 860
Period size: 47 Copynumber: 12.1 Consensus size: 47
95016096 GAAATGATAG
*
95016106 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95016153 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
95016200 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95016247 TAGGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
95016293 TAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
95016340 TAGGGCCGAGTGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95016387 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
95016436 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
95016485 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
95016532 TAAGGCGTAATGGCCGATGTGATGAATTTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95016579 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
95016628 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
95016675 TAAG
1 TAAG
95016679 TCCCGAAGGG
Statistics
Matches: 490, Mismatches: 31, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
46 43 0.09
47 314 0.64
49 133 0.27
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:95016568 original size:192 final size:192
Alignment explanation
Indices: 95016106--95016678 Score: 919
Period size: 192 Copynumber: 3.0 Consensus size: 192
95016096 GAAATGATAG
* *
95016106 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGTAATGGCCGAT
*
95016171 GTGATGAATGTGAAAGTGTATATACGTGATAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
95016236 --TATATACGTGATAGGGCCTAAT-GCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
131 TATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * *
95016293 TAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCG-AGTGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CGTAATGGCCGA
95016357 TGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGT
65 TGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGT
95016422 GTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
130 GTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
95016485 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGTAATGGCCGAT
* * * *
95016550 GTGATGAATTTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTG
66 GTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
95016615 TATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
131 TATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
95016675 TAAG
1 TAAG
95016679 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 22, Indels: 11
0.92 0.06 0.03
Matches are distributed among these distances:
187 121 0.34
188 1 0.00
189 21 0.06
190 34 0.10
191 3 0.01
192 177 0.50
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (192 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:95016853 original size:37 final size:37
Alignment explanation
Indices: 95016797--95016875 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
95016787 CCGAGCTCTA
* ** *
95016797 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
*
95016834 AAGACCCGATAACTTCGTGTGAAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
95016871 AAGAC
1 AAGAC
95016876 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
Found at i:95018803 original size:29 final size:29
Alignment explanation
Indices: 95018768--95018841 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
95018758 GTTGTGAGAT
* *
95018768 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
95018797 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
95018826 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
95018842 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:95019275 original size:40 final size:40
Alignment explanation
Indices: 95019231--95019546 Score: 544
Period size: 40 Copynumber: 7.9 Consensus size: 40
95019221 GAATTACTAA
95019231 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
95019271 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
95019311 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
95019351 ATCCGGGCTAAGTCCCGAAGAGCATTC-TGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
95019390 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
95019430 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
95019470 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
95019510 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
95019547 CGTGTATTCG
Statistics
Matches: 263, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 39 0.15
40 224 0.85
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:95019445 original size:159 final size:159
Alignment explanation
Indices: 95019231--95019533 Score: 543
Period size: 159 Copynumber: 1.9 Consensus size: 159
95019221 GAATTACTAA
95019231 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* *
95019296 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTA
66 TCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTA
*
95019361 AGTCCCGAAGAGCATTCTGCTAGTGATGT
131 AATCCCGAAGAGCATTCTGCTAGTGATGT
*
95019390 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* * *
95019455 TCATGCTAGCGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTA
66 TCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTA
95019520 AATCCCGAAGAGCA
131 AATCCCGAAGAGCA
95019534 ATCATGCTGG
Statistics
Matches: 137, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
159 137 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (159 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTA
AATCCCGAAGAGCATTCTGCTAGTGATGT
Found at i:95023053 original size:47 final size:47
Alignment explanation
Indices: 95022984--95023508 Score: 798
Period size: 47 Copynumber: 11.1 Consensus size: 47
95022974 GAAATGATAG
* *
95022984 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
95023031 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
95023078 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95023125 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
95023172 TAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
95023219 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95023266 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
95023315 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95023362 TAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
95023409 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
95023458 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
95023505 TAAG
1 TAAG
95023509 TCCCGAAGGG
Statistics
Matches: 444, Mismatches: 30, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 360 0.81
49 84 0.19
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:95023241 original size:141 final size:142
Alignment explanation
Indices: 95022987--95023506 Score: 828
Period size: 143 Copynumber: 3.7 Consensus size: 142
95022977 ATGATAGTAA
* * *
95022987 GGCCTAATGGTCGATGTGATGAATGTGAAAGTG-TATATATGAGATAAGGCCTAATGGCCGATGT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCGAATGGCCGATGT
*
95023051 GATGAATGTGAAAGTGTAAATACGTGATAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATACGTGATAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
95023116 TATACGTGATAG
131 TATACGTGATAG
95023128 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCGATGT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCGAATGGCCGATGT
95023192 GATGAATGTGAAAGTGTATATACGTGATAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATACGTGATAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
95023257 TATACGTGATAG
131 TATACGTGATAG
*
95023269 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTTATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TTATATATGTGATAAGGCCGAATGGCCGATG
* * * *
95023334 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTGT
65 TGATGAATGTGAAAGTGTATATACGTGATAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGT
* *
95023399 ATATATGTGATAA
130 ATATACGTGATAG
* * * * * *
95023412 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATATGTGATAAGGCCGAATGGCCGATG
* * *
95023477 TGATGGATGTGAAAGTGTATAAATGTGATA
65 TGATGAATGTGAAAGTGTATATACGTGATA
95023507 AGTCCCGAAG
Statistics
Matches: 356, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 170 0.48
142 1 0.00
143 185 0.52
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (142 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCGAATGGCCGATGT
GATGAATGTGAAAGTGTATATACGTGATAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
TATACGTGATAG
Found at i:95027721 original size:40 final size:40
Alignment explanation
Indices: 95027642--95027818 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
95027632 CGGATGATAA
* * * *
95027642 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
95027682 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
95027722 CCGGGCTAAGACCCGAAAGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
95027762 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
95027802 -CTGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
95027819 ATACTTGGGT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 16 0.14
40 98 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:95035652 original size:25 final size:25
Alignment explanation
Indices: 95035624--95035671 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95035614 CTATTTTTGA
*
95035624 TAGTATATCTTGAAACTGCTATAAG
1 TAGTATATCTTGAAACTACTATAAG
* *
95035649 TAGTATATGTTGAGACTACTATA
1 TAGTATATCTTGAAACTACTATA
95035672 GATAGACTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (25 bp):
TAGTATATCTTGAAACTACTATAAG
Found at i:95043636 original size:12 final size:12
Alignment explanation
Indices: 95043619--95043661 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
95043609 CGTCACACGA
*
95043619 CCGTGTGGTAGG
1 CCGTGTGGTAAG
95043631 CCGTGTGGTAAG
1 CCGTGTGGTAAG
95043643 CCGTGTGGTAAG
1 CCGTGTGGTAAG
95043655 CCGTGTG
1 CCGTGTG
95043662 CCATAACATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.12, C:0.19, G:0.44, T:0.26
Consensus pattern (12 bp):
CCGTGTGGTAAG
Found at i:95046419 original size:46 final size:46
Alignment explanation
Indices: 95046366--95046542 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
95046356 TATTTGGGCA
*
95046366 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * *
95046412 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-AGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * *
95046460 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* **
95046506 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95046543 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 60 0.56
47 4 0.04
48 29 0.27
49 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:95046523 original size:94 final size:94
Alignment explanation
Indices: 95046362--95046533 Score: 301
Period size: 94 Copynumber: 1.8 Consensus size: 94
95046352 AGGATATTTG
*
95046362 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
95046427 TTGAGTCCGAGTTCGTGAAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAAGATGTAACTA
* *
95046456 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
95046520 GTTGAGTCCGAGTT
65 GTTGAGTCCGAGTT
95046534 TGCTTATGGG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 2 0.03
94 72 0.97
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (94 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAGATGTAACTA
Found at i:95053149 original size:30 final size:30
Alignment explanation
Indices: 95053105--95053193 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
95053095 CAAAGATAAC
*
95053105 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
95053134 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
95053164 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
95053194 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:95053153 original size:15 final size:14
Alignment explanation
Indices: 95053105--95053187 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
95053095 CAAAGATAAC
*
95053105 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
95053119 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
95053134 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
95053149 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
95053164 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
95053179 AAGAAACCC
1 AAGAAACCC
95053188 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:95053193 original size:15 final size:15
Alignment explanation
Indices: 95053116--95053193 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
95053106 AGAAAACCGA
95053116 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
95053131 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
95053145 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
95053160 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
95053176 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
95053191 ATA
1 ATA
95053194 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:95058149 original size:43 final size:43
Alignment explanation
Indices: 95058088--95058289 Score: 244
Period size: 43 Copynumber: 4.7 Consensus size: 43
95058078 CAATGTCATA
* * *
95058088 TCCTAGATATGGTCTTACATGTTATCACATATCGATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATCACATAACGATGCCAATG
* * *
95058131 TCCTAGACATGGTCTTACACGAAATCATATAACGATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATCACATAACGATGCCAATG
* * *
95058174 TCCTAGACATGGTCTTACATGAAACCATATAACGATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATCACATAACGATGCCAATG
* * * *
95058217 TCCCAAACATGGTCTTACACGTAATCACA-ATACAATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATCACATA-ACGATGCCAATG
* * *
95058260 TCCCAGACATAGTTTTACATGTAATCACAT
1 TCCTAGACATGGTCTTACATGTAATCACAT
95058290 CTCGGTAATC
Statistics
Matches: 138, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 137 0.99
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
TCCTAGACATGGTCTTACATGTAATCACATAACGATGCCAATG
Found at i:95061399 original size:49 final size:49
Alignment explanation
Indices: 95061225--95061684 Score: 733
Period size: 49 Copynumber: 9.6 Consensus size: 49
95061215 CCCTTCGGGA
* * *
95061225 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
95061272 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
95061319 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
95061366 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
95061415 CTTATCAC--ATATATACACTTTCACATTCATTACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
95061462 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
95061511 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
95061558 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
95061607 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
95061656 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
95061685 TATTCAAATA
Statistics
Matches: 385, Mismatches: 20, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 178 0.46
49 206 0.54
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:95061432 original size:96 final size:96
Alignment explanation
Indices: 95061225--95061684 Score: 762
Period size: 96 Copynumber: 4.8 Consensus size: 96
95061215 CCCTTCGGGA
* * * * * *
95061225 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
* * *
95061288 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
95061319 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
95061384 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
95061415 CTTATCACATATATACACTTTCACATTCATTACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
95061480 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
95061511 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
95061576 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
95061607 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
95061672 ACACTTTCACATT
64 ACACTTTCACATT
95061685 TATTCAAATA
Statistics
Matches: 346, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 48 0.14
96 231 0.67
98 67 0.19
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:95062855 original size:15 final size:15
Alignment explanation
Indices: 95062835--95062870 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
95062825 TGTTTTTTCA
95062835 TTTATTTCATTAACT
1 TTTATTTCATTAACT
95062850 TTTATTTCATTAACT
1 TTTATTTCATTAACT
95062865 TTTATT
1 TTTATT
95062871 ATATTCTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTATTTCATTAACT
Found at i:95064031 original size:20 final size:21
Alignment explanation
Indices: 95063993--95064031 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
95063983 AATGGTCATG
*
95063993 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
*
95064014 GATGATTT-CGAGTCACTT
1 GATGATTTAAGAGTCACTT
95064032 TTTGTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:95065377 original size:204 final size:204
Alignment explanation
Indices: 95065026--95065435 Score: 784
Period size: 204 Copynumber: 2.0 Consensus size: 204
95065016 ATTATGGAAC
95065026 GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCACCGATGGCTTTTTAAGC
1 GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCACCGATGGCTTTTTAAGC
95065091 CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
66 CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
95065156 GTAGGGATGGATGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACAGGATACAGAGTGTAG
131 GTAGGGATGGATGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACAGGATACAGAGTGTAG
95065221 GGTTGGATT
196 GGTTGGATT
*
95065230 GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCATCGATGGCTTTTTAAGC
1 GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCACCGATGGCTTTTTAAGC
95065295 CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
66 CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
* * *
95065360 GTAGGGATGGGTGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACGGGATACAGTGTGTAG
131 GTAGGGATGGATGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACAGGATACAGAGTGTAG
95065425 GGTTGGATT
196 GGTTGGATT
95065434 GG
1 GG
95065436 TATTTGTGCA
Statistics
Matches: 202, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
204 202 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.28
Consensus pattern (204 bp):
GGAGGAAGTATTTGAGGATCGCATGGTTTTTTGACGACCATGGATTCACCGATGGCTTTTTAAGC
CCAATATATGATTAGCAGCTTTGCTGCAACGTTAGGTAGTTCCGCAACCAGGCTACATCAGGAGT
GTAGGGATGGATGGGTCGATTAAGTCCCTACAAGAGTATAGGGTTGGACAGGATACAGAGTGTAG
GGTTGGATT
Found at i:95070482 original size:46 final size:46
Alignment explanation
Indices: 95070316--95070531 Score: 188
Period size: 46 Copynumber: 4.6 Consensus size: 46
95070306 TTACCAATGC
* *
95070316 CATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTATACTGGCTCTACATAT-GAGGCCGATG
* * * * * * * *
95070363 CATGTACCAGACATGTCTTATACTAGCGCT-CGTCTCATTGCTGATG
1 CATGTCCCAGACATGTCTTATACTGGCTCTACATATGA-GGCCGATG
* * *
95070409 CTATATCCCAGATATGGTCTTATACTGGCTCT-CATAATGTGGCCGATG
1 C-ATGTCCCAGACAT-GTCTTATACTGGCTCTACAT-ATGAGGCCGATG
* *
95070457 CATGTCCCAGACATGTCTTACACTGGCT-TACATTTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTATACTGGCTCTACA-TATGAGGCCGATG
* *
95070503 CATGTCCCAGACATGCCTTATACTAGCTC
1 CATGTCCCAGACATGTCTTATACTGGCTC
95070532 ACACGAATGA
Statistics
Matches: 134, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.01
46 72 0.54
47 36 0.27
48 23 0.17
49 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTATACTGGCTCTACATATGAGGCCGATG
Found at i:95075236 original size:47 final size:47
Alignment explanation
Indices: 95075179--95075482 Score: 416
Period size: 47 Copynumber: 6.4 Consensus size: 47
95075169 ATTGATGTAC
* * *
95075179 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
95075226 AAGTATATATATGCGTGATATGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
95075275 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
95075322 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
95075369 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
95075416 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
95075463 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
95075483 TCCCGAAGGG
Statistics
Matches: 238, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 196 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:95075360 original size:22 final size:22
Alignment explanation
Indices: 95075333--95075454 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
95075323 CATGTGTATG
95075333 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
95075355 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
95075380 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
95075402 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
95075427 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
95075449 TGTGAT
1 TGTGAT
95075455 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:95084903 original size:44 final size:45
Alignment explanation
Indices: 95084748--95084960 Score: 205
Period size: 48 Copynumber: 4.6 Consensus size: 45
95084738 TTGCCAATGC
* * *
95084748 CATGTCCCAGACATGGTCTTACACTGGATATCATCATCGAGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTA-CATC-TCGAGGCCGATG
* * * * *
95084796 CATGTCCCAGACATGTCTTACACTAGCTTTCGTATATCCATGCAGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TAC--ATCTCGAGGCCGATG
* **
95084844 CATGTCCCAGGCATGTCTTACACTAGC-ACATCTCGTA-GTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTACATCTCG-AGGCCGATG
* * * *
95084888 CATGTCCTAGACATGTCTTACACTGGCTTACATTTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGC-TACATCTCGAGGCCGATG
95084934 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
95084961 GCTGGTCTCA
Statistics
Matches: 136, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 33 0.24
45 2 0.01
46 37 0.27
47 12 0.09
48 50 0.37
49 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTACATCTCGAGGCCGATG
Found at i:95084909 original size:92 final size:90
Alignment explanation
Indices: 95084748--95084960 Score: 248
Period size: 92 Copynumber: 2.3 Consensus size: 90
95084738 TTGCCAATGC
* * *
95084748 CATGTCCCAGACATGGTCTTACACTGGATATCATCATCG-AGGCTGATGCATGTCCCAGACATGT
1 CATGTCCCAGACAT-GTCTTACACTAG-CA-CATC-TCGTA-GTTGATGCATGTCCCAGACATGT
* * *
95084812 CTTACACTAGCTTTCGTATATCCATGCAGATG
61 CTTACACTAGCTTAC--ATATCCAGGCAGATA
* *
95084844 CATGTCCCAGGCATGTCTTACACTAGCACATCTCGTAGTTGATGCATGTCCTAGACATGTCTTAC
1 CATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGTTGATGCATGTCCCAGACATGTCTTAC
* * * *
95084909 ACTGGCTTACATTTCGAGGCCGATA
66 ACTAGCTTACATATCCAGGCAGATA
95084934 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
95084961 GCTGGTCTCA
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
90 36 0.35
92 37 0.36
93 5 0.05
94 1 0.01
95 11 0.11
96 13 0.13
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (90 bp):
CATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGTTGATGCATGTCCCAGACATGTCTTAC
ACTAGCTTACATATCCAGGCAGATA
Found at i:95085000 original size:138 final size:138
Alignment explanation
Indices: 95084748--95085001 Score: 300
Period size: 138 Copynumber: 1.8 Consensus size: 138
95084738 TTGCCAATGC
* *
95084748 CATGTCCCAGACATGGTCTTACACTGGATATCATCATCGAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACACTGGATATCATCATCGAGGCCGATACATGTCCCAGACATGTC
** * **
95084813 TTACACTAGCTTTCGTATATCCATGCAGATGCATGTCCCAGGCATGTCTTACACTAGCACATCTC
66 TTACACTAGCGCTCGTATAT-C-TGCAGATGCATATCCCAAACATGTCTTACACTAGCACATCTC
95084878 GTAGTTGATG
129 GTAGTTGATG
* * *
95084888 CATGTCCTAGACAT-GTCTTACACTGGCT-TACAT-TTCGAGGCCGATACATGTCCCAGACATGT
1 CATGTCCCAGACATGGTCTTACACTGGATAT-CATCATCGAGGCCGATACATGTCCCAGACATGT
* * * *
95084950 CTTACACTAGCGCTGGTCTCAT-TGCTGATGCCATATCCCAAATATGGTCTTA
65 CTTACACTAGCGCTCGTAT-ATCTGCAGATG-CATATCCCAAACAT-GTCTTA
95085002 TACTGGCTCT
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
136 7 0.07
137 10 0.10
138 48 0.50
139 18 0.19
140 13 0.14
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (138 bp):
CATGTCCCAGACATGGTCTTACACTGGATATCATCATCGAGGCCGATACATGTCCCAGACATGTC
TTACACTAGCGCTCGTATATCTGCAGATGCATATCCCAAACATGTCTTACACTAGCACATCTCGT
AGTTGATG
Found at i:95087129 original size:48 final size:48
Alignment explanation
Indices: 95087023--95087243 Score: 167
Period size: 48 Copynumber: 4.7 Consensus size: 48
95087013 TGGTTAATGA
* *
95087023 GATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCATACG-TATGA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATCTGCAT-CGATATGT
*
95087071 GAGT-CGGTGTAAGACCATGTCTGGGACATGGCATCTGCATCGATATGT
1 GA-TCCCGTGTAAGACCATGTCTGGGACATGGCATCTGCATCGATATGT
* * ** * * * * *
95087119 GATCCCGTGTATGACCATATCAAGGATATGGC-TTTGGTATCGTTAAGT
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATCT-GCATCGATATGT
** *
95087167 GATTTCGTATACA-ACCATGTCTGGGACATGGCATC-G-AT--ATGA-G-
1 GATCCCGTGTA-AGACCATGTCTGGGACATGGCATCTGCATCGAT-ATGT
* *
95087210 G-TCCCATATAAGACCATGTCTGGGACATGGCATC
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATC
95087244 GGCACCAGTA
Statistics
Matches: 139, Mismatches: 26, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.01
42 28 0.20
43 1 0.01
44 2 0.01
45 1 0.01
46 2 0.01
47 6 0.04
48 96 0.69
49 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (48 bp):
GATCCCGTGTAAGACCATGTCTGGGACATGGCATCTGCATCGATATGT
Found at i:95091034 original size:21 final size:21
Alignment explanation
Indices: 95091009--95091050 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
95090999 AAAGCCAAAA
* *
95091009 ACCCTTCGCTTTACTTTCTTT
1 ACCCTTCACGTTACTTTCTTT
95091030 ACCCTTCACGTTACTTTCTTT
1 ACCCTTCACGTTACTTTCTTT
95091051 TCTTGTGCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.33, G:0.05, T:0.50
Consensus pattern (21 bp):
ACCCTTCACGTTACTTTCTTT
Found at i:95091755 original size:16 final size:16
Alignment explanation
Indices: 95091721--95091763 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
95091711 GCAAATCCCA
* *
95091721 AAAAGCCTAAATACTG
1 AAAAGCCAAAATACAG
*
95091737 AAAAGCCAAAATGCAG
1 AAAAGCCAAAATACAG
*
95091753 AAAAGTCAAAA
1 AAAAGCCAAAA
95091764 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.58, C:0.16, G:0.14, T:0.12
Consensus pattern (16 bp):
AAAAGCCAAAATACAG
Found at i:95092771 original size:31 final size:31
Alignment explanation
Indices: 95092729--95092807 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
95092719 TTTACCAGTT
95092729 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
95092760 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
95092791 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
95092808 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:95092890 original size:42 final size:42
Alignment explanation
Indices: 95092831--95092922 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
95092821 TGGCCCTTAG
**
95092831 GCCCATTTCAATATCACATGAAATGTCAATGGA-TGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAAT-GACTGTATGCAA
95092873 GCCCATTTCAATATCACATGAAATACCAATGACTGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGACTGTATGCAA
95092915 GCCCATTT
1 GCCCATTT
95092923 GGGGAGACCA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
41 2 0.04
42 45 0.96
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGACTGTATGCAA
Found at i:95093194 original size:16 final size:16
Alignment explanation
Indices: 95093170--95093201 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95093160 ACCCATATTC
*
95093170 TATGTAGAATGTCATG
1 TATGCAGAATGTCATG
95093186 TATGCAGAATGTCATG
1 TATGCAGAATGTCATG
95093202 CCCATATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34
Consensus pattern (16 bp):
TATGCAGAATGTCATG
Found at i:95095899 original size:31 final size:29
Alignment explanation
Indices: 95095864--95095925 Score: 106
Period size: 31 Copynumber: 2.1 Consensus size: 29
95095854 GCCGAAACCC
95095864 TTTCATAAATCATATCACTGGGCCTAAGCCT
1 TTTCATAAATCATATCACT-GGCC-AAGCCT
95095895 TTTCATAAATCATATCACTGGCCAAGCCT
1 TTTCATAAATCATATCACTGGCCAAGCCT
95095924 TT
1 TT
95095926 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 8 0.26
30 4 0.13
31 19 0.61
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (29 bp):
TTTCATAAATCATATCACTGGCCAAGCCT
Found at i:95096184 original size:25 final size:24
Alignment explanation
Indices: 95096150--95096208 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 24
95096140 TAATGGGACA
95096150 AAGCCC-TTTCTGATAAACTGGGGC
1 AAGCCCTTTTC-GATAAACTGGGGC
*
95096174 AAGCCCTTTTCGGTAAACTGGGGC
1 AAGCCCTTTTCGATAAACTGGGGC
95096198 AGAGCCCTTTT
1 A-AGCCCTTTT
95096209 GCACTTCCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 19 0.59
25 13 0.41
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.27
Consensus pattern (24 bp):
AAGCCCTTTTCGATAAACTGGGGC
Found at i:95096260 original size:16 final size:16
Alignment explanation
Indices: 95096239--95096269 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
95096229 ACCCATATCC
95096239 ATGCAGAATGTCATGT
1 ATGCAGAATGTCATGT
95096255 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
95096270 CCCATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Done.