Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 293 of 356
Found at i:95304395 original size:82 final size:81
Alignment explanation
Indices: 95304224--95304404 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
95304214 GATTAAATTG
* *
95304224 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
95304289 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
95304305 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
95304369 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
95304387 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
95304405 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:95311409 original size:27 final size:27
Alignment explanation
Indices: 95311378--95311554 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
95311368 TAAATTGTAC
95311378 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
95311405 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
95311431 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
95311459 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
95311487 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
95311514 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
95311541 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
95311555 AGACTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:95311492 original size:82 final size:81
Alignment explanation
Indices: 95311379--95311534 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
95311369 AAATTGTACA
* *
95311379 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
95311443 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
95311460 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
95311525 TGCGAGTTGA
65 TGCGAATTGA
95311535 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:95311546 original size:82 final size:81
Alignment explanation
Indices: 95311375--95311554 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
95311365 GATTAAATTG
* *
95311375 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
95311440 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
95311456 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
95311520 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
95311538 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
95311555 AGACTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:95314487 original size:28 final size:26
Alignment explanation
Indices: 95314455--95314556 Score: 93
Period size: 28 Copynumber: 3.7 Consensus size: 26
95314445 ATAAATATAT
95314455 GCACTATGTGTGCGAGATTAGTAATTGA
1 GCACTATGTGTGCGAGATTAGTAA--GA
95314483 GCACTATGTGTGCGAGATCGGGT-GTAAG-
1 GCACTATGTGTGCGAGAT----TAGTAAGA
*
95314511 GCACTATGTGTGCGA-ATTTATTAACCGA
1 GCACTATGTGTGCGAGA-TTAGTAA--GA
95314539 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
95314557 CGGGTGTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 20
0.75 0.01 0.24
Matches are distributed among these distances:
24 1 0.02
25 3 0.05
27 2 0.03
28 50 0.79
29 2 0.03
31 4 0.06
32 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.29
Consensus pattern (26 bp):
GCACTATGTGTGCGAGATTAGTAAGA
Found at i:95314522 original size:56 final size:56
Alignment explanation
Indices: 95314455--95314578 Score: 196
Period size: 56 Copynumber: 2.2 Consensus size: 56
95314445 ATAAATATAT
**
95314455 GCACTATGTGTGCGAGA-TTAGTAATTGAGCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGA-ATTTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
*
95314511 GCACTATGTGTGCGAATTTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAATTTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
*
95314567 GCACTGTGTGTG
1 GCACTATGTGTG
95314579 TGCAAAATTA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
55 1 0.02
56 62 0.98
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.29
Consensus pattern (56 bp):
GCACTATGTGTGCGAATTTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:95314570 original size:28 final size:28
Alignment explanation
Indices: 95314483--95314578 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
95314473 TAGTAATTGA
95314483 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
***
95314511 GCACTATGTGTGCGA-AT-TTAT-TAACCG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
95314538 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
*
95314567 GCACTGTGTGTG
1 GCACTATGTGTG
95314579 TGCAAAATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 3 0.05
28 41 0.75
29 3 0.05
30 1 0.02
31 3 0.05
ACGTcount: A:0.22, C:0.16, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:95322040 original size:27 final size:27
Alignment explanation
Indices: 95322010--95322107 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
95322000 TATAATATAT
95322010 GCACTATGTGTGCGAGATTAGTAACCA
1 GCACTATGTGTGCGAGATTAGTAACCA
*
95322037 GCACTATGTGTGCGAGATGGT-GTAA--G
1 GCACTATGTGTGCGAGAT--TAGTAACCA
* *
95322063 GCACTATGTGTGAGA-ATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACC-A
95322090 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
95322108 CGGATGTAAG
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
23 1 0.02
24 3 0.05
25 2 0.03
26 14 0.24
27 32 0.54
28 6 0.10
29 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATTAGTAACCA
Found at i:95322093 original size:53 final size:55
Alignment explanation
Indices: 95322010--95322129 Score: 183
Period size: 53 Copynumber: 2.2 Consensus size: 55
95322000 TATAATATAT
*
95322010 GCACTATGTGTGCGAGATTAGTAACCAGCACTATGTGTGCGAGAT-GG-TGTAAG
1 GCACTATGTGTGAGAGATTAGTAACCAGCACTATGTGTGCGAGATCGGATGTAAG
*
95322063 GCACTATGTGTGAGA-ATTATTAACCGAGCACTATGTGTGCGAGATCGGATGTAAG
1 GCACTATGTGTGAGAGATTAGTAACC-AGCACTATGTGTGCGAGATCGGATGTAAG
*
95322118 GCACTGTGTGTG
1 GCACTATGTGTG
95322130 TGCAAAATTA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
52 9 0.15
53 33 0.54
54 2 0.03
55 17 0.28
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.28
Consensus pattern (55 bp):
GCACTATGTGTGAGAGATTAGTAACCAGCACTATGTGTGCGAGATCGGATGTAAG
Found at i:95329610 original size:28 final size:28
Alignment explanation
Indices: 95329578--95329679 Score: 118
Period size: 28 Copynumber: 3.6 Consensus size: 28
95329568 ATGAATATAT
95329578 GCACTATGTGTGCGAGATTAGTAACCAA
1 GCACTATGTGTGCGAGATTAGTAACCAA
* *
95329606 GCACTATGTGTGCGAGATTGAGTGTA--AG
1 GCACTATGTGTGCGAGATT-AGT-AACCAA
* * * *
95329634 GCACTATGTGTGAGAAATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCAA
95329662 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
95329680 CGGATGTAAG
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.02
27 2 0.03
28 53 0.88
29 3 0.05
30 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTAGTAACCAA
Found at i:95329659 original size:56 final size:56
Alignment explanation
Indices: 95329578--95329701 Score: 178
Period size: 56 Copynumber: 2.2 Consensus size: 56
95329568 ATGAATATAT
* * *
95329578 GCACTATGTGTGCGAGATTAGTAACCAAGCACTATGTGTGCGAGAT-TGAGTGTAAG
1 GCACTATGTGTGAGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGA-TGTAAG
* *
95329634 GCACTATGTGTGAGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGATGTAAG
1 GCACTATGTGTGAGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGATGTAAG
*
95329690 GCACTGTGTGTG
1 GCACTATGTGTG
95329702 TGCAAAATTA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
56 59 0.97
57 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (56 bp):
GCACTATGTGTGAGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGATGTAAG
Found at i:95329693 original size:28 final size:26
Alignment explanation
Indices: 95329578--95329701 Score: 90
Period size: 28 Copynumber: 4.5 Consensus size: 26
95329568 ATGAATATAT
* *
95329578 GCACTATGTGTGCGAGATTA-GTAACCAA
1 GCACTATGTGTGCGAGATGATGT-A--AG
95329606 GCACTATGTGTGCGAGATTGAGTGTAAG
1 GCACTATGTGTGCGAGA-TGA-TGTAAG
* * *
95329634 GCACTATGTGTGAGAAATTAT-TAACCG
1 GCACTATGTGTGCGAGATGATGTAA--G
95329661 AGCACTATGTGTGCGAGATCGGATGTAAG
1 -GCACTATGTGTGCGAGAT--GATGTAAG
*
95329690 GCACTGTGTGTG
1 GCACTATGTGTG
95329702 TGCAAAATTA
Statistics
Matches: 78, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
25 3 0.04
26 1 0.01
27 3 0.04
28 60 0.77
29 3 0.04
30 3 0.04
31 5 0.06
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (26 bp):
GCACTATGTGTGCGAGATGATGTAAG
Found at i:95332612 original size:17 final size:17
Alignment explanation
Indices: 95332590--95332623 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
95332580 GCAAGCTATC
95332590 AGGATTTCAAAAATACA
1 AGGATTTCAAAAATACA
95332607 AGGATTTCAAAAATACA
1 AGGATTTCAAAAATACA
95332624 TATAGCATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
AGGATTTCAAAAATACA
Found at i:95335087 original size:28 final size:28
Alignment explanation
Indices: 95335056--95335119 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 28
95335046 ATACCTTTCA
*
95335056 CATATTCACA-ATTAATTTACACATATAG
1 CATATTCACATACT-ATTTACACATATAG
*
95335084 CATATTTTCTCATACTATTTACACATATAG
1 CATA--TTCACATACTATTTACACATATAG
95335114 CATATT
1 CATATT
95335120 TTCTCATACT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 6 0.19
30 23 0.74
31 2 0.06
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.41
Consensus pattern (28 bp):
CATATTCACATACTATTTACACATATAG
Found at i:95335097 original size:17 final size:17
Alignment explanation
Indices: 95335077--95335127 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
95335067 TTAATTTACA
95335077 CATATAGCATATTTTCT
1 CATATAGCATATTTTCT
* *
95335094 C--ATA-C-TATTTACA
1 CATATAGCATATTTTCT
95335107 CATATAGCATATTTTCT
1 CATATAGCATATTTTCT
95335124 CATA
1 CATA
95335128 CTTATATCAC
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
13 7 0.27
14 1 0.04
15 6 0.23
16 1 0.04
17 11 0.42
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (17 bp):
CATATAGCATATTTTCT
Found at i:95335105 original size:30 final size:30
Alignment explanation
Indices: 95335070--95335129 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
95335060 TTCACAATTA
95335070 ATTTACACATATAGCATATTTTCTCATACT
1 ATTTACACATATAGCATATTTTCTCATACT
95335100 ATTTACACATATAGCATATTTTCTCATACT
1 ATTTACACATATAGCATATTTTCTCATACT
95335130 TATATCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.43
Consensus pattern (30 bp):
ATTTACACATATAGCATATTTTCTCATACT
Found at i:95335139 original size:30 final size:30
Alignment explanation
Indices: 95335073--95335139 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
95335063 ACAATTAATT
*
95335073 TACACATATAGCATATTTTCTCATACTATT
1 TACACATATAGCATATTTTCTCATACTATA
95335103 TACACATATAGCATATTTTCTCATACT-TA
1 TACACATATAGCATATTTTCTCATACTATA
95335132 TATCACAT
1 TA-CACAT
95335140 CTCATCACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 3 0.09
30 32 0.91
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (30 bp):
TACACATATAGCATATTTTCTCATACTATA
Found at i:95342680 original size:40 final size:40
Alignment explanation
Indices: 95342583--95342807 Score: 222
Period size: 40 Copynumber: 5.7 Consensus size: 40
95342573 TTGAATGCTG
* * * * *
95342583 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** * *
95342623 TCCAGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
95342663 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
95342703 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
95342743 TTCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
95342782 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
95342808 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 33 0.21
40 116 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:95342793 original size:39 final size:40
Alignment explanation
Indices: 95342636--95342805 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
95342626 AGACTAAGAT
* * *
95342636 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
*
95342676 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** * *
95342716 CCGAAGGCATTCGTGCGAGTTGTTAAATTCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
95342756 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
95342795 CCGAAGGCATT
1 CCGAAGGCATT
95342806 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 33 0.28
40 84 0.72
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:95349402 original size:27 final size:27
Alignment explanation
Indices: 95349372--95349603 Score: 313
Period size: 27 Copynumber: 8.6 Consensus size: 27
95349362 ATATCGAGTC
* * *
95349372 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
95349399 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
95349426 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
95349453 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
95349480 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
95349508 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
95349535 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
95349562 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
95349589 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95349604 GTACAATTTA
Statistics
Matches: 186, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
27 162 0.87
28 24 0.13
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:95349538 original size:109 final size:108
Alignment explanation
Indices: 95349372--95349603 Score: 322
Period size: 109 Copynumber: 2.1 Consensus size: 108
95349362 ATATCGAGTC
* * *
95349372 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAG
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAG
*
95349437 TGC-TACATAATCAAATCGCACACTTAGTGCTACATAATCAAAT
66 TGCAT-CATAATCAAATCGCACACTTAGTGCAACATAATCAAAT
* * ** *
95349480 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTA
* ** *
95349545 GTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
65 GTGCATCATAATCAAATCGCACACTTAGTGCAACATAATCAAAT
95349589 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95349604 GTACAATTTA
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
108 20 0.18
109 88 0.81
110 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (108 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAG
TGCATCATAATCAAATCGCACACTTAGTGCAACATAATCAAAT
Found at i:95354562 original size:14 final size:13
Alignment explanation
Indices: 95354541--95354578 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
95354531 AAATATTTGA
95354541 CTTGTTCTTAATT
1 CTTGTTCTTAATT
95354554 CTGTGTTCTTAATT
1 CT-TGTTCTTAATT
95354568 CTTGTT-TTAAT
1 CTTGTTCTTAAT
95354579 ATTCTAGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.21
13 6 0.25
14 13 0.54
ACGTcount: A:0.16, C:0.13, G:0.11, T:0.61
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:95355547 original size:25 final size:25
Alignment explanation
Indices: 95355519--95355588 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
95355509 CTCTTTTAAT
*
95355519 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
95355544 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
95355569 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
95355589 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:95355821 original size:27 final size:27
Alignment explanation
Indices: 95355791--95356033 Score: 315
Period size: 27 Copynumber: 9.0 Consensus size: 27
95355781 GGGGCAAAAT
* * * *
95355791 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
95355818 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
95355845 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
95355872 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
95355899 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
95355926 GATAATTCTACCCTACAGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
95355953 AGTAATTCTACCCTACAGGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
95355980 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
95356007 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
95356034 AATATCACAA
Statistics
Matches: 186, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 186 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:95356081 original size:27 final size:27
Alignment explanation
Indices: 95356051--95356228 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
95356041 CAAATCGAGA
* * *
95356051 GTATTTTGATAATTTCACAAATTAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
* *
95356078 GTATTTTGGCAATTTTACAAGCCT-GGG
1 GTATTTTGGTAATTTTACAA-ACTAGGG
95356105 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
* * *
95356132 GTATTTTAGTAATTTTAAAAACCAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
** *
95356159 GTATTTTGGTAATTTTACTGA-TCGAGG
1 GTATTTTGGTAATTTTACAAACTAG-GG
** * *
95356186 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAACTAGGG
**
95356213 GTATTTCAGTAATTTT
1 GTATTTTGGTAATTTT
95356229 GTAAATCGAG
Statistics
Matches: 122, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.02
27 118 0.97
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACTAGGG
Found at i:95356159 original size:81 final size:81
Alignment explanation
Indices: 95356074--95356228 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
95356064 TTCACAAATT
* * *
95356074 AGGGGTATTTTGGCAATTTTACA-AGCCTG-GGGTATTTTGGTAATTTTACAAACTAGGGGTATT
1 AGGGGTATTTTGGCAATTTTACAGA-TC-GAGGGTATTTTGGTAATTTTACAAACCAAGGGTATT
*
95356137 TTAGTAATTTTAAAAACC
64 TCAGTAATTTTAAAAACC
* * **
95356155 AGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC
1 AGGGGTATTTTGGCAATTTTACAGATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTC
95356220 AGTAATTTT
66 AGTAATTTT
95356229 GTAAATCGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 1 0.02
81 62 0.97
82 1 0.02
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGCAATTTTACAGATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTC
AGTAATTTTAAAAACC
Found at i:95356174 original size:54 final size:53
Alignment explanation
Indices: 95356051--95356228 Score: 194
Period size: 54 Copynumber: 3.3 Consensus size: 53
95356041 CAAATCGAGA
* * * * * *
95356051 GTATTTTGATAATTTCACAAATTAGGGGTATTTTGGCAATTTTACAAGCCTGGG
1 GTATTTTGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTAAAAACCAGGG
*
95356105 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTAAAAACCAGGG
1 GTATTTTGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTAAAAACCAGGG
** * ** *
95356159 GTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAATAG-GGGTATTTTGGTAATTTTAAAAACCAGGG
**
95356213 GTATTTCAGTAATTTT
1 GTATTTTGGTAATTTT
95356229 GTAAATCGAG
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
53 2 0.02
54 104 0.98
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (53 bp):
GTATTTTGGTAATTTTACAAATAGGGGTATTTTGGTAATTTTAAAAACCAGGG
Found at i:95356404 original size:107 final size:108
Alignment explanation
Indices: 95356220--95356454 Score: 355
Period size: 107 Copynumber: 2.2 Consensus size: 108
95356210 AGGGTATTTC
* * * *
95356220 AGTAATTTTGTAAATCGAGGGTAAAACTGTAATTCTATAAATCGAGGGTAAAACGGTTATTCTAT
1 AGTAATTCTGTAAATCGAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
* *
95356285 AAATTAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAT
66 AAATCAAGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAAT
* *
95356328 GGTAATTCTGTAAATCGAGGATAAAACGGT-ATTCTATAAATCGAGGGTAAAATGGTAATTCTAT
1 AGTAATTCTGTAAATCGAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
* * *
95356392 AAATCGAGGGTAAAATGGTAACTCTGTAAATTGAGGGTAAAAT
66 AAATCAAGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAAT
*
95356435 AGTAATTCTGTAAATTGAGG
1 AGTAATTCTGTAAATCGAGG
95356455 GTACTTTGGT
Statistics
Matches: 114, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
107 88 0.77
108 26 0.23
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.31
Consensus pattern (108 bp):
AGTAATTCTGTAAATCGAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
AAATCAAGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAAT
Found at i:95356468 original size:27 final size:27
Alignment explanation
Indices: 95356221--95356457 Score: 316
Period size: 27 Copynumber: 8.8 Consensus size: 27
95356211 GGGTATTTCA
* *
95356221 GTAATTTTGTAAATCGAGGGTAAAACT-
1 GTAATTCTATAAATCGAGGGTAAAA-TG
*
95356248 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
95356275 GTTATTCTATAAATTAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
95356302 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
95356329 GTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
95356356 GT-ATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
95356382 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
95356409 GTAACTCTGTAAATTGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
95356436 GTAATTCTGTAAATTGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
95356458 CTTTGGTAAT
Statistics
Matches: 187, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.12
27 164 0.88
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:95358791 original size:24 final size:24
Alignment explanation
Indices: 95358745--95358816 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 24
95358735 GCTTTATCAT
** *
95358745 ATAACTGGAGGCCTAGCCTTTTTTA
1 ATAACTGG-GGCAAAGCCCTTTTTA
*
95358770 ATAACTGGGGCAAAGCCCTTTTTG
1 ATAACTGGGGCAAAGCCCTTTTTA
95358794 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCCTTTT
95358817 CGGTAAACTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.33
25 28 0.67
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCCTTTTTA
Found at i:95358829 original size:24 final size:25
Alignment explanation
Indices: 95358772--95358840 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
95358762 CTTTTTTAAT
*
95358772 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
95358797 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
95358822 AACT-GGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
95358841 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 14 0.34
25 27 0.66
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:95359075 original size:27 final size:27
Alignment explanation
Indices: 95359045--95359286 Score: 313
Period size: 27 Copynumber: 9.0 Consensus size: 27
95359035 GGCAAAATGA
* * * *
95359045 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
95359072 TAATTCTACCTTGCAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
95359099 TATTTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
95359126 TAATTCTACCCTACAGGGGTATCTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
95359153 TAATTCTACCCTATAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
95359180 TAATTCTACCCTATAGGGTTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
95359207 TAATTCTACCCTACAGGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
95359234 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
95359261 TAATTCTACCCTACAAGGGTATTTCG
1 TAATTCTACCCTACAGGGGTATTTCG
95359287 ATATTTTACA
Statistics
Matches: 184, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 184 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:95359136 original size:81 final size:81
Alignment explanation
Indices: 95359045--95359286 Score: 358
Period size: 81 Copynumber: 3.0 Consensus size: 81
95359035 GGCAAAATGA
* * * * * * * *
95359045 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTGCAGGGGTATTTCGATATTTCTACCC
1 TAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCC
95359110 TATAGGGGTATTTCGG
66 TATAGGGGTATTTCGG
* *
95359126 TAATTCTACCCTACAGGGGTATCTCAGTAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCC
* *
95359191 TATAGGGTTATTTCAG
66 TATAGGGGTATTTCGG
95359207 TAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCC
* *
95359272 TACAAGGGTATTTCG
66 TATAGGGGTATTTCG
95359287 ATATTTTACA
Statistics
Matches: 143, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 143 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCC
TATAGGGGTATTTCGG
Found at i:95359338 original size:27 final size:26
Alignment explanation
Indices: 95359219--95359482 Score: 174
Period size: 27 Copynumber: 9.9 Consensus size: 26
95359209 ATTCTACCCT
* * * **
95359219 ACAGGGGTATCTCGGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* **
95359246 ACAGGGGTATTTTGGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-CAA
* * *
95359273 ACAAGGGTATTTCGAT-ATTTTACAA
1 ACAGGGGTATTTTGGTAATTTTACAA
* * *
95359298 ATC-GAGAGTATTTTGATAATTTCACAA
1 A-CAG-GGGTATTTTGGTAATTTTACAA
*
95359325 ATCAGGGGTGTTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTGGTAATTTTACAA
* **
95359352 GCCTGGGTATTTTGGTAATTTTACAA
1 ACAGGGGTATTTTGGTAATTTTACAA
* *
95359378 ACTAGGGGTATTTTAGTAATTATACAA
1 AC-AGGGGTATTTTGGTAATTTTACAA
*
95359405 ACCAGGGGTATTTTGGTAATTTTACTGA
1 A-CAGGGGTATTTTGGTAATTTTAC-AA
* **
95359433 TC-GAGGGTATTTTGGTAATTTTGTAA
1 ACAG-GGGTATTTTGGTAATTTTACAA
** *
95359459 ACCAATGGTATTTTAGTAATTTTA
1 A-CAGGGGTATTTTGGTAATTTTA
95359483 TAAATCGAGG
Statistics
Matches: 190, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.01
26 41 0.22
27 144 0.76
28 3 0.02
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (26 bp):
ACAGGGGTATTTTGGTAATTTTACAA
Found at i:95359362 original size:53 final size:54
Alignment explanation
Indices: 95359247--95359493 Score: 200
Period size: 54 Copynumber: 4.6 Consensus size: 54
95359237 TTCTACCCTA
* ** * * * *
95359247 CAGGGGTATTTTGGTAATTCTAC-CCTACAAGGGTATTTCGAT-ATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAT-CAGGGGTATTTTGGTAATTTTACAAAC
* * * * *
95359300 C-GAGAGTATTTTGATAATTTCACAAATCAGGGGTGTTTTGGTAATTTTACAAGC
1 CAG-GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
* * *
95359354 C-TGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTAGTAATTATACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAAC
** **
95359407 CAGGGGTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAAC
** * *
95359461 CAATGGTATTTTAGTAATTTTATAAATCGAGGG
1 CAGGGGTATTTTGGTAATTTTACAAATC-AGGG
95359494 TAAAACAGTA
Statistics
Matches: 152, Mismatches: 33, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
52 2 0.01
53 72 0.47
54 74 0.49
55 3 0.02
56 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
Found at i:95359495 original size:81 final size:80
Alignment explanation
Indices: 95359247--95359493 Score: 230
Period size: 80 Copynumber: 3.1 Consensus size: 80
95359237 TTCTACCCTA
* * * * * * * *
95359247 CAGGGGTATTTTGGTAATTCTACCCTA-CAAGGGTATTTCGAT-ATTTTACAAATCGAGAGTATT
1 CAGGGGTATTTTGGTAATTTTA--CAAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATT
*
95359310 TT-GATAATTTCACAAAT
64 TTAG-TAATTTTACAAAT
* * * *
95359327 CAGGGGTGTTTTGGTAATTTTACAAGCCTGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
* *
95359392 AGTAATTATACAAAC
66 AGTAATTTTACAAAT
* * * ** *
95359407 CAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTT
1 CAGGGGTATTTTGGTAATTTTAC-AAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
*
95359472 TAGTAATTTTATAAAT
65 TAGTAATTTTACAAAT
95359488 CGAGGG
1 C-AGGG
95359494 TAAAACAGTA
Statistics
Matches: 134, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
78 2 0.01
79 11 0.08
80 70 0.52
81 47 0.35
82 4 0.03
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
AGTAATTTTACAAAT
Found at i:95359655 original size:134 final size:135
Alignment explanation
Indices: 95359475--95359734 Score: 387
Period size: 134 Copynumber: 1.9 Consensus size: 135
95359465 GGTATTTTAG
* * * *
95359475 TAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAA
1 TAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAA
* * *
95359540 ATCGAGGGTAAAATTGTAATTCTATAAATTGAGGGTAAAACAGTAATTCTGT-AATCGAGGATAA
66 ATCGAGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGATAA
95359604 AACGA
131 AACGA
* ** * *
95359609 TAATTCTATTAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAA
* *
95359674 ATCGAGGGTAAAATGGTAACTCTGTAAATCGAGGGTAAAACTGTAATTCTGTAAATCGAGG
66 ATCGAGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGG
95359735 GTACTTTGGT
Statistics
Matches: 111, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
134 103 0.93
135 8 0.07
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (135 bp):
TAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAA
ATCGAGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGATAA
AACGA
Found at i:95359748 original size:27 final size:27
Alignment explanation
Indices: 95359474--95359737 Score: 325
Period size: 27 Copynumber: 9.8 Consensus size: 27
95359464 TGGTATTTTA
* * **
95359474 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
95359501 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
95359528 ATAATTTTGTAAATCGAGGGTAAAATT
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * **
95359555 GTAATTCTATAAATTGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
95359582 GTAATTCTGT-AATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
95359608 ATAATTCTATTAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
95359635 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
95359662 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
95359689 GTAACTCTGTAAATCGAGGGTAAAACT-
1 GTAATTCTGTAAATCGAGGGTAAAA-TG
95359716 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
95359738 CTTTGGTAAT
Statistics
Matches: 209, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 21 0.10
27 187 0.89
28 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:95374785 original size:46 final size:46
Alignment explanation
Indices: 95374735--95374903 Score: 141
Period size: 46 Copynumber: 3.7 Consensus size: 46
95374725 GCATCCGAAT
95374735 TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGC
1 TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGC
* * * * *
95374781 TCATTGAGTTAAGTCTGAGTTC-GTGA--GAT-CTAACTAGGCATCCGAGC
1 TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCCGAGC
* * *
95374828 TCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGC
1 TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGC
** * *
95374874 TTGTTGA-ATGAAGTCCGAGTTCGCTTATGG
1 TCATTGAGTTG-AGTCCGAGTTCACTTATGG
95374904 GCGGGTTACA
Statistics
Matches: 96, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
42 4 0.04
43 3 0.03
45 5 0.05
46 49 0.51
47 25 0.26
48 3 0.03
50 3 0.03
51 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGC
Found at i:95374888 original size:93 final size:93
Alignment explanation
Indices: 95374724--95374896 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
95374714 AGGATATTTG
* * *
95374724 GGCATCCGAATTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAA
* *
95374789 TTAAGTCTGAGTTCGTGAGATCTAACTA
66 TGAAGTCCGAGTTCGTGAGATCTAACTA
* * * **
95374817 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAA
95374882 TGAAGTCCGAGTTCG
66 TGAAGTCCGAGTTCG
95374897 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAA
TGAAGTCCGAGTTCGTGAGATCTAACTA
Found at i:95376240 original size:27 final size:27
Alignment explanation
Indices: 95376210--95376301 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
95376200 ATTACCAAAG
*
95376210 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
95376237 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * **
95376264 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACTGTTT
95376291 TACCCTCGATT
1 TACCCTCGATT
95376302 ATGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:95376436 original size:27 final size:27
Alignment explanation
Indices: 95376305--95376506 Score: 142
Period size: 27 Copynumber: 7.4 Consensus size: 27
95376295 CTCGATTATG
* **
95376305 AAATTACTAAAATACCCCT-ATAGGGTA
1 AAATTACCAAAATACCCCTGAT-TTGTA
*
95376332 GAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * *
95376359 AAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** * *
95376386 AAATTACTGAAATACCCTTAATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
**
95376413 AAATTACCAAAATACCCCTGATTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
95376440 AAATTA-CAGAAATACCCTTGACTTTCTAA
1 AAATTACCA-AAATACCCCTGA-TTTGT-A
* * *
95376469 AAATTA-TAGAAATACCCTTGGTTTGTA
1 AAATTACCA-AAATACCCCTGATTTGTA
* *
95376496 GATTTACCAAA
1 AAATTACCAAA
95376507 TCACCTTTGT
Statistics
Matches: 139, Mismatches: 30, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
26 2 0.01
27 108 0.78
28 9 0.06
29 20 0.14
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:95376443 original size:81 final size:80
Alignment explanation
Indices: 95376266--95376457 Score: 201
Period size: 81 Copynumber: 2.4 Consensus size: 80
95376256 TACTGTTTTA
***
95376266 CCCTCGATTTACAAAATTACCATTTTACCCTCGATTATGAAATTACTAAAATACCCCTATAGGGT
1 CCCT-GATTTACAAAATTACCAAAATACCCTCGATTATGAAATTACTAAAATACCCCTATAGGGT
*
95376331 AGAATTACCAAAATAC
65 AAAATTACCAAAATAC
** * * * * * **
95376347 CCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACTGAAATACCCTTA-ATTT
1 CCCTGA-TTTACAAAATTACCAAAATACC-CTCGATTATGAAATTACTAAAATACCCCTATA-GG
95376410 GTAAAATTACCAAAATAC
63 GTAAAATTACCAAAATAC
95376428 CCCTGATTTACAAAATTA-CAGAAATACCCT
1 CCCTGATTTACAAAATTACCA-AAATACCCT
95376458 TGACTTTCTA
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
79 1 0.01
80 22 0.24
81 67 0.74
82 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (80 bp):
CCCTGATTTACAAAATTACCAAAATACCCTCGATTATGAAATTACTAAAATACCCCTATAGGGTA
AAATTACCAAAATAC
Found at i:95376444 original size:54 final size:54
Alignment explanation
Indices: 95376333--95376458 Score: 164
Period size: 54 Copynumber: 2.3 Consensus size: 54
95376323 TATAGGGTAG
* * * ***
95376333 AATTACCA-AAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTA-CAGAAATACCCTTAATTTGTAAAATTACCAAAATACCACTGATTTACAA
* *
95376387 AATTACTGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACAGAAATACCCTTAATTTGTAAAATTACCAAAATACCACTGATTTACAA
95376441 AATTACAGAAATACCCTT
1 AATTACAGAAATACCCTT
95376459 GACTTTCTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.02
54 61 0.98
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACAGAAATACCCTTAATTTGTAAAATTACCAAAATACCACTGATTTACAA
Found at i:95387430 original size:40 final size:40
Alignment explanation
Indices: 95387334--95387409 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
95387324 CGACTATGCT
*
95387334 TGGCACTAAGTGTGCGAGTTAGAATAGCTTTGGCTACAAA
1 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACAAA
*
95387374 TGGCACTAAGTGTGCGAGTTGGAATAGCTTCGGCTA
1 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTA
95387410 TATAAGGCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (40 bp):
TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACAAA
Found at i:95392402 original size:56 final size:56
Alignment explanation
Indices: 95392337--95392453 Score: 216
Period size: 56 Copynumber: 2.1 Consensus size: 56
95392327 GACAGTAATG
95392337 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
* *
95392393 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGGAGT
1 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
95392449 ATGGG
1 ATGGG
95392454 TAATAAAGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.26
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:95392472 original size:56 final size:56
Alignment explanation
Indices: 95392337--95392469 Score: 162
Period size: 56 Copynumber: 2.4 Consensus size: 56
95392327 GACAGTAATG
** *
95392337 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGAAAGGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
** * * *
95392393 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGGAGT
1 ATGGGCAAAACATGAAAGGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
*
95392449 ATGGGTAATAA-A-GAAAGGAAA
1 ATGGGCAA-AACATGAAAGGAAA
95392470 ACAAAAGAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
55 6 0.09
56 62 0.89
57 2 0.03
ACGTcount: A:0.46, C:0.07, G:0.23, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGAAAGGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:95393644 original size:40 final size:41
Alignment explanation
Indices: 95393461--95393691 Score: 172
Period size: 40 Copynumber: 5.6 Consensus size: 41
95393451 TTGAATGCTG
* * * * * *
95393461 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTAC-GAGTTATTAAAA
*
95393501 TCCGGACTAAGAT-CCGAAGGCATTCGTACGAGTTATT-AAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTACGAGTTATTAAAA
* *
95393541 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTATTAAATCCGTA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTACGAGTTATTAAA-----A
* *
95393587 TTCCGGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 -TCC-GGGCTAAGTCCCGAAGGCATTCGTACGAGTTATTAAAA
* * * *
95393629 TCCGGGTTAAGTCCCGAAGGCATT-GTATGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTACGAGTTATTAAAA
*
95393669 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
95393692 TGAACGAGGA
Statistics
Matches: 163, Mismatches: 16, Indels: 25
0.80 0.08 0.12
Matches are distributed among these distances:
39 28 0.17
40 86 0.53
41 11 0.07
42 1 0.01
46 1 0.01
47 9 0.06
48 27 0.17
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTACGAGTTATTAAAA
Found at i:95393673 original size:39 final size:40
Alignment explanation
Indices: 95393592--95393691 Score: 123
Period size: 39 Copynumber: 2.5 Consensus size: 40
95393582 CCGTATTCCG
* *
95393592 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAATCC
1 GGGTTAAGTCCCGAAGGCATTCGTACGAGTTCTAAAATCC
* *
95393632 GGGTTAAGTCCCGAAGGCATT-GTATGAGTTACTATAA-CC
1 GGGTTAAGTCCCGAAGGCATTCGTACGAGTT-CTAAAATCC
* *
95393671 GGGCTATGTCCCGAAGGCATT
1 GGGTTAAGTCCCGAAGGCATT
95393692 TGAACGAGGA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 28 0.53
40 25 0.47
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTCGTACGAGTTCTAAAATCC
Found at i:95400192 original size:56 final size:56
Alignment explanation
Indices: 95400127--95400243 Score: 216
Period size: 56 Copynumber: 2.1 Consensus size: 56
95400117 GACAGTAATG
95400127 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
* *
95400183 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGGAGT
1 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
95400239 ATGGG
1 ATGGG
95400244 TAATAAAGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.26
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:95400262 original size:56 final size:56
Alignment explanation
Indices: 95400127--95400259 Score: 162
Period size: 56 Copynumber: 2.4 Consensus size: 56
95400117 GACAGTAATG
** *
95400127 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGAAAGGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
** * * *
95400183 ATGGGCAAAACATGTCATGAAACATGTTTTGTTAATGGAAGAATAAAATAAGGAGT
1 ATGGGCAAAACATGAAAGGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
*
95400239 ATGGGTAATAA-A-GAAAGGAAA
1 ATGGGCAA-AACATGAAAGGAAA
95400260 ACAAAAGAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
55 6 0.09
56 62 0.89
57 2 0.03
ACGTcount: A:0.46, C:0.07, G:0.23, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGAAAGGAAACATGTTTTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:95401401 original size:40 final size:40
Alignment explanation
Indices: 95401252--95401474 Score: 224
Period size: 40 Copynumber: 5.6 Consensus size: 40
95401242 TTGAATGCTG
* * * * *
95401252 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
*
95401292 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
95401332 TCCGGACTAAGAT-CCAAAGGCATTCGTGCGAGTTATTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
95401372 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATT-AAA
* ** *
95401412 TCCGGGTTAAGTCCCGAAGGCATT-GTATGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTA-AA
*
95401452 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
95401475 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 32 0.20
40 121 0.76
41 7 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:95407019 original size:40 final size:41
Alignment explanation
Indices: 95406964--95407060 Score: 162
Period size: 40 Copynumber: 2.4 Consensus size: 41
95406954 TGACTATGCG
95406964 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACA-AA
1 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACATAA
* *
95407004 TGGCACTAAGTGTGCGAGTTGGAATAGCTTCGGCTATATAA
1 TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACATAA
95407045 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
95407061 TACCGACTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
40 52 0.96
41 2 0.04
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTAGAATAGCTTCGGCTACATAA
Found at i:95413151 original size:31 final size:31
Alignment explanation
Indices: 95413113--95413222 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
95413103 TTTAACGGTT
95413113 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
95413144 ACTGGGCCGAAACCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
95413175 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* * *
95413206 ATTGGGGCAAAGCCTTT
1 ACTGGGCCGAAGCCTTT
95413223 ACTGTAAATG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:95413293 original size:42 final size:42
Alignment explanation
Indices: 95413246--95413337 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
95413236 TGGCCCTTAG
* * ** *
95413246 GCCCATTTCAATATCACATGTAATGTCAAAGGATGTATGCAA
1 GCCCATTTCAATATCAAATGAAATACCAAAGAATGTATGCAA
*
95413288 GCCCATTTCAATATCAAATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCAAATGAAATACCAAAGAATGTATGCAA
*
95413330 GCCTATTT
1 GCCCATTT
95413338 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCAAATGAAATACCAAAGAATGTATGCAA
Found at i:95413553 original size:26 final size:26
Alignment explanation
Indices: 95413482--95413626 Score: 222
Period size: 26 Copynumber: 5.7 Consensus size: 26
95413472 CCTCTTTAAT
95413482 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
95413507 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
95413532 AACTGGGGCATAAGCCCTTTTCCGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
95413558 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
* * *
95413584 AACTAGGCCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
95413610 AACTGGGGCATAAGCCC
1 AACTGGGGCATAAGCCC
95413627 ATTTGCACTT
Statistics
Matches: 109, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 34 0.31
26 75 0.69
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:95414494 original size:27 final size:27
Alignment explanation
Indices: 95414403--95414486 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
95414393 GGGTATATTC
* *
95414403 GTCACTTTACCATACAGCGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
* *
95414430 GTCACTTTACCCTAGAGGGACTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
95414457 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
95414484 GTC
1 GTC
95414487 TTTTTACCTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.30
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:95416022 original size:40 final size:40
Alignment explanation
Indices: 95415978--95416194 Score: 224
Period size: 40 Copynumber: 5.6 Consensus size: 40
95415968 GCTACTCATT
*
95415978 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
95416018 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
95416058 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* **
95416098 CCAATGCCTT-----C---GCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
95416130 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
95416171 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
95416195 ACATCATTCA
Statistics
Matches: 150, Mismatches: 13, Indels: 28
0.79 0.07 0.15
Matches are distributed among these distances:
31 1 0.01
32 24 0.16
35 1 0.01
37 1 0.01
40 107 0.71
41 16 0.11
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:95416179 original size:72 final size:72
Alignment explanation
Indices: 95416046--95416181 Score: 177
Period size: 72 Copynumber: 1.9 Consensus size: 72
95416036 AGCCCGGTTA
* * *
95416046 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGC
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGC
95416111 CCGAAAT
66 CCGAAAT
** * *
95416118 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTTC
95416181 G
64 G
95416182 GGACTTAGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
71 3 0.05
72 48 0.87
73 4 0.07
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (72 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGC
CCGAAAT
Found at i:95418051 original size:81 final size:81
Alignment explanation
Indices: 95417937--95418199 Score: 329
Period size: 81 Copynumber: 3.3 Consensus size: 81
95417927 TTTAGAAAGT
* *
95417937 CAAGGGTATTTTTGTAACTTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAATTAAGGGTAT
1 CAAGGGTATTTTAGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTAT
*
95418000 TTCGGTAATTTCACAAAC
64 TTCGGTAATTTTACAAAC
* * *
95418018 C-AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAATTGAGGGTATT
1 CAAG-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATT
95418082 TCGGTAATTTTACAAAC
65 TCGGTAATTTTACAAAC
* * * **
95418099 CAAGGGTATTTTAGCACTTTTACAGACTA-GGGTATTTTGGTAATTTTACTGA-TAGAGGGTATT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTA-AGGGTATT
* **
95418162 TTGGTAATTTTGTAAAC
65 TCGGTAATTTTACAAAC
95418179 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
95418200 GTAAATCGAG
Statistics
Matches: 159, Mismatches: 18, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.02
80 69 0.43
81 85 0.53
82 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTT
CGGTAATTTTACAAAC
Found at i:95418200 original size:27 final size:27
Alignment explanation
Indices: 95417926--95418213 Score: 242
Period size: 27 Copynumber: 10.7 Consensus size: 27
95417916 TTTCCATAAT
* *
95417926 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAAGGGTATTTTGGTAA
* ** *
95417954 CTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
* *
95417981 TTTTACAAATTAAGGGTATTTCGGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
* *
95418008 TTTCACAAA-CCAGTGGTATTTTGGTAA
1 TTTTACAAATCAAG-GGTATTTTGGTAA
* *
95418035 TTTTACAAA-CTAGGGGTATTTTGATAA
1 TTTTACAAATC-AAGGGTATTTTGGTAA
** *
95418062 TTTTACAAATTGAGGGTATTTCGGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
* * * *
95418089 TTTTACAAACCAAGGGTATTTTAGCAC
1 TTTTACAAATCAAGGGTATTTTGGTAA
* *
95418116 TTTTACAGA-CTAGGGTATTTTGGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
**
95418142 TTTTACTGAT-AGAGGGTATTTTGGTAA
1 TTTTACAAATCA-AGGGTATTTTGGTAA
** * *
95418169 TTTTGTAAACCAAGGGTATTTTAGTAA
1 TTTTACAAATCAAGGGTATTTTGGTAA
** *
95418196 TTTTGTAAATCGAGGGTA
1 TTTTACAAATCAAGGGTA
95418214 AAACAGTAAT
Statistics
Matches: 208, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
26 23 0.11
27 177 0.85
28 8 0.04
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
TTTTACAAATCAAGGGTATTTTGGTAA
Found at i:95418359 original size:27 final size:27
Alignment explanation
Indices: 95418192--95418343 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
95418182 GGGTATTTTA
* * *
95418192 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
95418219 GTAATTTTGTAAATCAATGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
95418246 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
95418273 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
95418300 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
95418327 GTAATTCTATAAATCGA
1 GTAATTCTATAAATCGA
95418344 TGGTCCTTTG
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:95418362 original size:81 final size:81
Alignment explanation
Indices: 95418192--95418341 Score: 246
Period size: 81 Copynumber: 1.9 Consensus size: 81
95418182 GGGTATTTTA
* * * *
95418192 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAATGGTAAAACGGTAATTCTATA
1 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
95418257 AATCAAGGGTAAAATG
66 AATCAAGGGTAAAATG
* *
95418273 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
95418338 AATC
66 AATC
95418342 GATGGTCCTT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (81 bp):
GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATA
AATCAAGGGTAAAATG
Found at i:95419990 original size:118 final size:117
Alignment explanation
Indices: 95419782--95420011 Score: 343
Period size: 118 Copynumber: 2.0 Consensus size: 117
95419772 GTGCACTTCT
* *
95419782 AGTTATTCTTGGACTAGATAGCCTGTAAAAAGAAATTTCAAGGTTCAAATCTAGTAATGTCTTAT
1 AGTTATTCTTGGACTAGATAGCCTGTAAAAAGAAATTTCAAGATTCAAATCTAGTAATGACTTAT
*
95419847 GTATGGTATTGAATTTTTATATGCCTCATTATTATCTCTGTGTTCTTTCTGCC
66 GTATGGTATTGAATTTTTATATGCCTCATT-TTATCTCTGTATTCTTTCTGCC
* * * * * *
95419900 AGTTATTCTTGGGCTATATAGGCTGTAAAAAGAAATTTCTAGATTCAAATCTAGTCATGACTTTT
1 AGTTATTCTTGGACTAGATAGCCTGTAAAAAGAAATTTCAAGATTCAAATCTAGTAATGACTTAT
* * *
95419965 GTTTGGTTTTGAATTTTTATATGCCTTATTTTATCTCTGTATTCTTT
66 GTATGGTATTGAATTTTTATATGCCTCATTTTATCTCTGTATTCTTT
95420012 TTAGTGGGTG
Statistics
Matches: 100, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
117 16 0.16
118 84 0.84
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (117 bp):
AGTTATTCTTGGACTAGATAGCCTGTAAAAAGAAATTTCAAGATTCAAATCTAGTAATGACTTAT
GTATGGTATTGAATTTTTATATGCCTCATTTTATCTCTGTATTCTTTCTGCC
Found at i:95422949 original size:18 final size:18
Alignment explanation
Indices: 95422926--95422963 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
95422916 TTACTAAGCG
95422926 TTAGTTATGAAGGTAGGT
1 TTAGTTATGAAGGTAGGT
95422944 TTAGTTATGAAGGTAGGT
1 TTAGTTATGAAGGTAGGT
95422962 TT
1 TT
95422964 TTATGGAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (18 bp):
TTAGTTATGAAGGTAGGT
Found at i:95431303 original size:28 final size:27
Alignment explanation
Indices: 95431238--95431417 Score: 270
Period size: 28 Copynumber: 6.6 Consensus size: 27
95431228 TTATTAAGTC
* * * *
95431238 CGCACACTCAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTACATAGTCAACT
*
95431265 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
95431293 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
95431320 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
95431348 CGTACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
95431376 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
95431403 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95431418 GCACAATTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
27 66 0.46
28 78 0.54
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:95431322 original size:55 final size:54
Alignment explanation
Indices: 95431238--95431417 Score: 270
Period size: 55 Copynumber: 3.3 Consensus size: 54
95431228 TTATTAAGTC
* * * * *
95431238 CGCACACTCAGTGCTATATAATCAGCTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCA-ACT
95431293 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACT
* *
95431348 CGTACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAACT
95431403 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95431418 GCACAATTTA
Statistics
Matches: 115, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
55 87 0.76
56 28 0.24
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
Found at i:95431377 original size:83 final size:82
Alignment explanation
Indices: 95431238--95431417 Score: 279
Period size: 83 Copynumber: 2.2 Consensus size: 82
95431228 TTATTAAGTC
* * * *
95431238 CGCACACTCAGTGCTATATAATCAGCTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
95431303 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
* * *
95431320 CGCACACTTAGTGCTACATAGTCAAACTCGTACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
95431385 AGTGCTACATAGTCAATT
65 AGTGCTACATAGTCAACT
95431403 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95431418 GCACAATTTA
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
82 20 0.22
83 69 0.78
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:95453241 original size:48 final size:49
Alignment explanation
Indices: 95453160--95453344 Score: 216
Period size: 48 Copynumber: 3.8 Consensus size: 49
95453150 TGAGGTCACG
* * *
95453160 TGTGTAGTACTAAGTGTAGGCTGCTATGTGTACC-GATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
* * * * *
95453208 TGTGCAGTACTAAGTGCAGGCTACTATGCGTACCCGA-AACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-T-TGGTCGCA
* * *
95453258 TGTGTAGTACTAAGTGCAGGCTACTACGTC-TACCAGATTATTGGTCGAA
1 TGTGTAGTACTAAGTGCAGGCTACTATG-CGTACCAGATAATTGGTCGCA
95453307 TGTGTAGTACTAAGTGCAGGCTAC-ATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
95453345 GCTTCGGTAC
Statistics
Matches: 114, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 42 0.37
49 31 0.27
50 38 0.33
51 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
Found at i:95453336 original size:98 final size:98
Alignment explanation
Indices: 95453155--95453339 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 98
95453145 TATGGTGAGG
* * * * *
95453155 TCACGTGTGTAGTACTAAGTGTAGGCTGCTATGTGTACCGATAATTGGTCGCATGTGCAGTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCGATAATTGGTCGAATGTGCAGTACTA
95453220 AGTGCAGGCTACTATGCGTACCCGAAACTGTGA
66 AGTGCAGGCTACTATGCGTACCCGAAACTGTGA
* *
95453253 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATTATTGGTCGAATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACC-GATAATTGGTCGAATGTGCAGTACT
95453318 AAGTGCAGGCTAC-ATGCGTACC
65 AAGTGCAGGCTACTATGCGTACC
95453340 AGATAGCTTC
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
98 44 0.56
99 35 0.44
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCGATAATTGGTCGAATGTGCAGTACTA
AGTGCAGGCTACTATGCGTACCCGAAACTGTGA
Found at i:95457097 original size:39 final size:40
Alignment explanation
Indices: 95457049--95457247 Score: 223
Period size: 39 Copynumber: 5.0 Consensus size: 40
95457039 CGGAATTTAA
** *
95457049 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
95457089 CCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95457128 CCGGTTATAGTAACTCGCACCAA-GCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
95457166 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
95457206 CCGGATATGGTCACTTAGCACAAA-GCCTTCAGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
95457246 CC
1 CC
95457248 CGACATCATC
Statistics
Matches: 139, Mismatches: 11, Indels: 18
0.83 0.07 0.11
Matches are distributed among these distances:
37 1 0.01
38 28 0.20
39 49 0.35
40 49 0.35
41 12 0.09
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95457177 original size:38 final size:39
Alignment explanation
Indices: 95457068--95457247 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 39
95457058 GCTACTCGTT
*
95457068 CAAATGCCTTCGGGACATAGCCCGG-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
95457107 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
95457147 CCAA-GCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCA
* * * *
95457185 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
*
95457226 CAAA-GCCTTCAGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
95457248 CGACATCATC
Statistics
Matches: 124, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
38 27 0.22
39 42 0.34
40 44 0.35
41 11 0.09
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:95463545 original size:46 final size:46
Alignment explanation
Indices: 95463397--95463660 Score: 175
Period size: 46 Copynumber: 5.7 Consensus size: 46
95463387 ATGTAACCAT
* * ** *
95463397 GCCGATGCATGTCCTAGACATGTCTTACACTAG--AACAT-CTCGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTG
** * * * * *
95463441 GCCGACACATGTTCCAAACATGTCTGACACTGG--CTAATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA-CT-GTG
* * *
95463487 GTCGATGTATGTCCCAGACATGTTTTACACTGGCTCTCATACTGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACTGTG
** * * **
95463533 GTTGATGCATGTCCCATACATGTCTTACACTAGCCTCGTC-T-CAAT-
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GGCTC-TCATACTGTG
* * *
95463578 GCCGATGCTATGTCCCAGACATGGTCTTACCACTGGCTATCATAATGCG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTA-CACTGGCTCTCATACTGTG
*
95463627 GCCAATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
95463661 ACCAAATCTC
Statistics
Matches: 169, Mismatches: 39, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
44 28 0.17
45 6 0.04
46 81 0.48
47 23 0.14
48 24 0.14
49 7 0.04
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACTGTG
Found at i:95463648 original size:94 final size:91
Alignment explanation
Indices: 95463489--95463657 Score: 239
Period size: 94 Copynumber: 1.8 Consensus size: 91
95463479 ATCTCGAGGT
* * * * *** *
95463489 CGATGTATGTCCCAGACATGTTTTACACTGGCTCTCATACTGTGGTTGATGCATGTCCCATACAT
1 CGATGTATGTCCCAGACATGTCTTACACTGGCTATCATAATGCGGCCAATGCATGTCCCAGACAT
95463554 GTCTTACACTAGCCTCGTCTCAATGC
66 GTCTTACACTAGCCTCGTCTCAATGC
95463580 CGATGCTATGTCCCAGACATGGTCTTACCACTGGCTATCATAATGCGGCCAATGCATGTCCCAGA
1 CGATG-TATGTCCCAGACAT-GTCTTA-CACTGGCTATCATAATGCGGCCAATGCATGTCCCAGA
95463645 CATGTCTTACACT
63 CATGTCTTACACT
95463658 GGCACCAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
91 5 0.07
92 14 0.21
93 5 0.07
94 43 0.64
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.30
Consensus pattern (91 bp):
CGATGTATGTCCCAGACATGTCTTACACTGGCTATCATAATGCGGCCAATGCATGTCCCAGACAT
GTCTTACACTAGCCTCGTCTCAATGC
Found at i:95471347 original size:26 final size:26
Alignment explanation
Indices: 95471311--95471362 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
95471301 CACACTATCA
*
95471311 CAGTTTATATGTATGATATGTATAGC
1 CAGTTTATATGTATGACATGTATAGC
*
95471337 CAGTTTATATGTATGGCATGTATAGC
1 CAGTTTATATGTATGACATGTATAGC
95471363 TAGACTCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (26 bp):
CAGTTTATATGTATGACATGTATAGC
Found at i:95479988 original size:119 final size:120
Alignment explanation
Indices: 95479782--95480005 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
95479772 TCCTCGTTCA
* *
95479782 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCTGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
95479847 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
95479902 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGTCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* * *
95479965 TATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAT
65 TATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGAT
95480006 ATCATTCAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
118 1 0.01
119 69 0.77
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:95480004 original size:40 final size:40
Alignment explanation
Indices: 95479780--95480007 Score: 291
Period size: 40 Copynumber: 5.7 Consensus size: 40
95479770 GCTCCTCGTT
* *
95479780 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
95479820 CAAATGCCTTCGGGACTTAACCCTGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
95479860 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
95479900 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
95479939 CAAATGCCTTCGGGTCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCA
95479980 CAAA-GCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
95480008 CATTCAAATA
Statistics
Matches: 166, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
39 34 0.20
40 123 0.74
41 9 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:95487985 original size:119 final size:120
Alignment explanation
Indices: 95487803--95488025 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
95487793 TCCTCGTTCA
* *
95487803 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCGTCGGGACTTAACCCGGAT
* *
95487868 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
95487923 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCGTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCGTCGGGA-CTTAACCCGG
* * *
95487985 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
95488026 CATCGTTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCGTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:95488025 original size:40 final size:40
Alignment explanation
Indices: 95487801--95488025 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
95487791 GCTCCTCGTT
* *
95487801 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
95487841 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
95487881 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
95487921 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
95487960 CAAATGCCGTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
95488001 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
95488026 CATCGTTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 118 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:95490856 original size:21 final size:20
Alignment explanation
Indices: 95490828--95490866 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
95490818 ATGTGTATTT
95490828 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
95490848 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
95490867 ATACAGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:95497514 original size:357 final size:358
Alignment explanation
Indices: 95496549--95497591 Score: 1953
Period size: 357 Copynumber: 2.9 Consensus size: 358
95496539 ACATATCATG
*
95496549 CCATATTCAAAAACATACCAAATCATCACAACTTACATAACTTCTAAATGCATTTTCTCACCTTT
1 CCATATTCAAAAACATACCAATTCATCACAACTTACATAACTTCTAAATGCATTTTCTCACCTTT
* *
95496614 CTATCAACCAAATTATACTTCTTAAACATACCACTTCATCATCCTCAAATCATACCAAAATTTAC
66 CTATCAACCAAATTATACTTCTCAAACATACCACTTCATCATCCACAAATCATACCAAAATTTAC
*
95496679 CATTCCTCAAGCATTAATACATCAACCAATAACTAACCAAAAGAGCACCCATACAACCATTTCAA
131 CATTCCTCAAGCATTAATACATCAACCAATAACTAACCAAAAGAGCATCCATACAACCATTTCAA
* *
95496744 GCAAGCCAACACTTAGGACATCATATACATCACATATAACATTCATCAAACATATAATCCAAGCC
196 GGAAG-CAACACTTAGGACATCATATACATCACATATAACATTCATCAAACATATAATTCAAGCC
* *** *
95496809 AACTTAAACGGCCATATACACCAACATTTACAAGCCAAGTTCATGCCTAATATCATGACTCAAAA
260 AACTTAAATGGTTGTATACACCAACATTTACAAGCCAAATTCATGCCTAATATCATGACTCAAAA
95496874 CATTTTCTCAAACATATAATTCAACTACTCAATT
325 CATTTTCTCAAACATATAATTCAACTACTCAATT
95496908 CCATATTCAAAAACATACCAATTCATCACAACTTACATAACTTCTAAATGCATTTTCTCACCTTT
1 CCATATTCAAAAACATACCAATTCATCACAACTTACATAACTTCTAAATGCATTTTCTCACCTTT
95496973 CTATCAACCAAATTATACTTCTCAAACATACCACTTCATCATCCACAAATCATACCAAAATTTAC
66 CTATCAACCAAATTATACTTCTCAAACATACCACTTCATCATCCACAAATCATACCAAAATTTAC
95497038 CATTCCTCAAGCATTAATACATCAACCAATAACTAACCAAAAGAGCATCCATACAACCATTTCAA
131 CATTCCTCAAGCATTAATACATCAACCAATAACTAACCAAAAGAGCATCCATACAACCATTTCAA
95497103 GGAAGCAACACTTAGGACATCATATACATCACATATAACATTCATCAAACATATAATTCAAGCCA
196 GGAAGCAACACTTAGGACATCATATACATCACATATAACATTCATCAAACATATAATTCAAGCCA
95497168 ACTTAAATGGTTGTATACACCAACATTTACAAGCCAAATTCATGCCTAATATCATGACTCAAAAC
261 ACTTAAATGGTTGTATACACCAACATTTACAAGCCAAATTCATGCCTAATATCATGACTCAAAAC
95497233 ATTTTCTCAAACATATAATTCAACTACTCAATT
326 ATTTTCTCAAACATATAATTCAACTACTCAATT
95497266 CCATATTCAAAAACATACCAATTCATCACAACTTACATAACTTCTAAAT-CATTTTCTCACCTTT
1 CCATATTCAAAAACATACCAATTCATCACAACTTACATAACTTCTAAATGCATTTTCTCACCTTT
95497330 CTATCAACCAAATTATACTTCTCAAACATACCACTTCATCATCCACAAATCATACCAAAATTTAC
66 CTATCAACCAAATTATACTTCTCAAACATACCACTTCATCATCCACAAATCATACCAAAATTTAC
*
95497395 CATTCCTCAAGCATTAATACATCAACCTATAACTAACCAAAAGAGCATCCATACAACCATTTCAA
131 CATTCCTCAAGCATTAATACATCAACCAATAACTAACCAAAAGAGCATCCATACAACCATTTCAA
95497460 GGAAGCAACACTTAGGACATCATATACATCACATATAACATTCATCAAACATATAATTCAAGCCA
196 GGAAGCAACACTTAGGACATCATATACATCACATATAACATTCATCAAACATATAATTCAAGCCA
*
95497525 ACTTAAATGGTTGTATACACCAACATTTACAAGCCAATTTCATGCCTAATATCATGACTCAAAAC
261 ACTTAAATGGTTGTATACACCAACATTTACAAGCCAAATTCATGCCTAATATCATGACTCAAAAC
95497590 AT
326 AT
95497592 ACCGAAATGA
Statistics
Matches: 671, Mismatches: 13, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
357 275 0.41
358 201 0.30
359 195 0.29
ACGTcount: A:0.41, C:0.27, G:0.04, T:0.27
Consensus pattern (358 bp):
CCATATTCAAAAACATACCAATTCATCACAACTTACATAACTTCTAAATGCATTTTCTCACCTTT
CTATCAACCAAATTATACTTCTCAAACATACCACTTCATCATCCACAAATCATACCAAAATTTAC
CATTCCTCAAGCATTAATACATCAACCAATAACTAACCAAAAGAGCATCCATACAACCATTTCAA
GGAAGCAACACTTAGGACATCATATACATCACATATAACATTCATCAAACATATAATTCAAGCCA
ACTTAAATGGTTGTATACACCAACATTTACAAGCCAAATTCATGCCTAATATCATGACTCAAAAC
ATTTTCTCAAACATATAATTCAACTACTCAATT
Found at i:95502409 original size:23 final size:23
Alignment explanation
Indices: 95502383--95502429 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
95502373 TATTCTATTA
*
95502383 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
95502406 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
95502429 T
1 T
95502430 AATGTCATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:95507603 original size:39 final size:39
Alignment explanation
Indices: 95507451--95507740 Score: 233
Period size: 40 Copynumber: 7.3 Consensus size: 39
95507441 ATTTGATGTG
* * *
95507451 TATCCGGGCTTAAAGACCCGCAGGCTATAC--GCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCT-T-CGTGCTGGAATTA
* * * * * *
95507491 TATCCGGGCTTAAAGACCCACCGGCTTTGTGCTAGAATTA
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTA
* * * *
95507531 TATTCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTA
* * * * *
95507571 TATCTGGACTTAAGGTCTGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTA
* * *
95507610 TATCCGGGCTTAAAAACCCGCAGGCTTCGTGCTGGAATTA
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTA
* * *
95507650 TATCCGGACTTACGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTA
* * * * * *
95507689 TATCCGGACATAAGGTCCGCAAGCTTCGTACTGGTACTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTA
*
95507728 TATCCGGGCTTAA
1 TATCCGGACTTAA
95507741 AGTCCCGTAG
Statistics
Matches: 208, Mismatches: 39, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
39 102 0.49
40 106 0.51
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTA
Found at i:95507693 original size:79 final size:79
Alignment explanation
Indices: 95507451--95507695 Score: 296
Period size: 79 Copynumber: 3.1 Consensus size: 79
95507441 ATTTGATGTG
* * * *
95507451 TATCCGGGCTTAAAGACCCGCAGGCTATAC--GCTGGAATTGTATCCGGGCTTAAAGACCCACCG
1 TATCCGGGCTTAAAGACCCGCAGGCT-T-CGTGCTGGAATTGTATCCGGACTT-AAGATCCGCAG
* *
95507514 GCTTTGTGCTAGAATTA
63 GCTTCGTGCTGGAATTA
* * * *
95507531 TATTCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCTGGACTTAAGGTCTGCAGGCT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCT
* *
95507596 TCATGCTGGAATTG
66 TCGTGCTGGAATTA
* * *
95507610 TATCCGGGCTTAAAAACCCGCAGGCTTCGTGCTGGAATTATATCCGGACTTACGATCCGCAGGCT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCT
* *
95507675 TCGTGCTGGTACTA
66 TCGTGCTGGAATTA
95507689 TATCCGG
1 TATCCGG
95507696 ACATAAGGTC
Statistics
Matches: 140, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
78 1 0.01
79 95 0.68
80 44 0.31
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (79 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCT
TCGTGCTGGAATTA
Found at i:95514470 original size:40 final size:39
Alignment explanation
Indices: 95514415--95514649 Score: 285
Period size: 40 Copynumber: 5.9 Consensus size: 39
95514405 ATATTTGATG
* *
95514415 TGTATCCGGGCTTAAAGACTCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCT-TGTGCTGGAAT
* * *
95514455 TGTATTCGGGCTTAAAGACCCACAGGCTTTGTGCTGCAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGC-TTGTGCTGGAAT
* *
95514495 TATATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTT-GTGCTGGAAT
** **
95514535 TGTATCCGAACTT-AAGGTCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTT-GTGCTGGAAT
95514574 TGTATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGC-TTGTGCTGGAAT
* *
95514614 TGTATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGG
1 TGTATCCGGGCTTAAAGACCCGCAGGCTT-GTGCTGG
95514650 TACTATATCG
Statistics
Matches: 168, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 56 0.33
40 107 0.64
41 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
TGTATCCGGGCTTAAAGACCCGCAGGCTTGTGCTGGAAT
Found at i:95514594 original size:79 final size:78
Alignment explanation
Indices: 95514415--95514649 Score: 326
Period size: 79 Copynumber: 3.0 Consensus size: 78
95514405 ATATTTGATG
* * * * * *
95514415 TGTATCCGGGCTTAAAGACTCGCAGGCTATATGCTGGAATTGTATTCGGGCTTAAAGACCCACAG
1 TGTATCCGGGCTTAAAGACCCGCAGGCT-TGTGCTGGAATTGTATCCGGACTT-AAGATCCGCAG
* *
95514480 GCTTTGTGCTGCAAT
64 GCTTCGTGCTGGAAT
* * * *
95514495 TATATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGAACTTAAGGTCCGCAGG
1 TGTATCCGGGCTTAAAGACCCGCAGGCTT-GTGCTGGAATTGTATCCGGACTTAAGATCCGCAGG
95514560 CTTCGTGCTGGAAT
65 CTTCGTGCTGGAAT
95514574 TGTATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGG
1 TGTATCCGGGCTTAAAGACCCGCAGGC-TTGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGG
95514639 CTTCGTGCTGG
65 CTTCGTGCTGG
95514650 TACTATATCG
Statistics
Matches: 137, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
79 91 0.66
80 46 0.34
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (78 bp):
TGTATCCGGGCTTAAAGACCCGCAGGCTTGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGC
TTCGTGCTGGAAT
Found at i:95514706 original size:39 final size:39
Alignment explanation
Indices: 95514495--95514706 Score: 129
Period size: 39 Copynumber: 5.4 Consensus size: 39
95514485 GTGCTGCAAT
* * * * * * *
95514495 TATATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TATATCCGGACTT-AAGATCCGCAGCCTTCGTACTGGTAC
* * * * * * *
95514535 TGTATCCGAACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAGATCCGCAGCCTTCGTACTGGTAC
* * * * * * * *
95514574 TGTATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAAT
1 TATATCCGGACTT-AAGATCCGCAGCCTTCGTACTGGTAC
* * *
95514614 TGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTAC
1 TATATCCGGACTTAAGATCCGCAGCCTTCGTACTGGTAC
* * *
95514653 TATAT-CGAGACTTAAGGTCTGTAGCCTTCGTACTGGTAC
1 TATATCCG-GACTTAAGATCCGCAGCCTTCGTACTGGTAC
*
95514692 TATATCCGGGCTTAA
1 TATATCCGGACTTAA
95514707 AGTCCCATAG
Statistics
Matches: 146, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
38 2 0.01
39 98 0.67
40 46 0.32
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAAGATCCGCAGCCTTCGTACTGGTAC
Found at i:95518760 original size:53 final size:53
Alignment explanation
Indices: 95518675--95518779 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
95518665 TTCTTTTTTA
* * * ** *
95518675 AACTTACCATTGCCATGTCTTGACACGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTACCATGCCTTGACACGGTCTTACAAGGGATCCTTGCCTTATG
* * *
95518728 AACTCACCATTACCATGCCTTGGCATGGTCTTACAAGGGATCTTTGCCTTAT
1 AACTCACCATTACCATGCCTTGACACGGTCTTACAAGGGATCCTTGCCTTAT
95518780 AGTAGTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (53 bp):
AACTCACCATTACCATGCCTTGACACGGTCTTACAAGGGATCCTTGCCTTATG
Found at i:95529991 original size:24 final size:24
Alignment explanation
Indices: 95529962--95530024 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
95529952 ATTCAAATCA
* * *
95529962 GCACACATAGTGCTATTCAACTCC
1 GCACACATAGTGCCATACAACACC
* * *
95529986 GGACACATTGTGCCATACTACACC
1 GCACACATAGTGCCATACAACACC
95530010 GCACACATAGTGCCA
1 GCACACATAGTGCCA
95530025 ATGTACACTT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATACAACACC
Found at i:95538705 original size:22 final size:22
Alignment explanation
Indices: 95538677--95538798 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
95538667 TTCCACATCC
95538677 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
95538699 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
95538723 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
95538746 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
95538770 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
95538793 ATCACA
1 ATCACA
95538799 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:95538712 original size:47 final size:47
Alignment explanation
Indices: 95538649--95539252 Score: 829
Period size: 47 Copynumber: 12.6 Consensus size: 47
95538639 CCCTTCGGGA
* * *
95538649 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
95538696 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
95538743 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
95538790 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
95538837 CTTATCACACATACACATGTTCACATTCATCACATTCATCACATTGGCCATTCGGC
1 CTTAT--CACAT----ATATACAC-TT--TCACATTCATCACATTGGCCATTCGGC
* *
95538893 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
95538940 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
95538987 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
95539036 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
95539083 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
95539132 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
95539179 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
95539226 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
95539253 TATTCAAATA
Statistics
Matches: 515, Mismatches: 25, Indels: 34
0.90 0.04 0.06
Matches are distributed among these distances:
46 1 0.00
47 370 0.72
48 1 0.00
49 95 0.18
50 6 0.01
53 4 0.01
54 5 0.01
55 1 0.00
56 32 0.06
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:95538871 original size:9 final size:9
Alignment explanation
Indices: 95538857--95538881 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
95538847 ATACACATGT
95538857 TCACATTCA
1 TCACATTCA
95538866 TCACATTCA
1 TCACATTCA
95538875 TCACATT
1 TCACATT
95538882 GGCCATTCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (9 bp):
TCACATTCA
Found at i:95539065 original size:96 final size:94
Alignment explanation
Indices: 95538866--95539252 Score: 589
Period size: 96 Copynumber: 4.1 Consensus size: 94
95538856 TTCACATTCA
* *
95538866 TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTG
* *
95538930 GCCATTCGGCCTTATCACACATACACA-TGT
65 GCCATTCGGCCTTATCACATATATACACT-T
95538960 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATT
95539025 GGCCATTCGGCCTTATCACATATATACACTT
64 GGCCATTCGGCCTTATCACATATATACACTT
* * *
95539056 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
1 TCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATT
*
95539121 GGCCATTAGGCCTTATCACATATATACACTT
64 GGCCATTCGGCCTTATCACATATATACACTT
* * *
95539152 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
* *
95539217 CTATTAGGCCTTATCACATATATACACTT
66 CCATTCGGCCTTATCACATATATACACTT
95539246 TCACATT
1 TCACATT
95539253 TATTCAAATA
Statistics
Matches: 280, Mismatches: 9, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
94 99 0.35
96 179 0.64
97 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
CCATTCGGCCTTATCACATATATACACTT
Found at i:95540646 original size:85 final size:85
Alignment explanation
Indices: 95540517--95540695 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
95540507 TATTTTATTG
*
95540517 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
95540582 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
95540602 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
95540667 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
95540687 CCCATGCTC
1 CCCATGCTC
95540696 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:95541187 original size:15 final size:15
Alignment explanation
Indices: 95541148--95541188 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
95541138 GTATCTTGGG
* *
95541148 TTTCTTTATCCTGGA
1 TTTCTTTATTCTAGA
*
95541163 TCTCTTTATTCTAGA
1 TTTCTTTATTCTAGA
95541178 TTTCTTTATTC
1 TTTCTTTATTC
95541189 CGGGTTTCTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.15, C:0.20, G:0.07, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTAGA
Found at i:95541196 original size:15 final size:15
Alignment explanation
Indices: 95541148--95541215 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
95541138 GTATCTTGGG
95541148 TTTCTTTA-TCCTGGA
1 TTTCTTTATTCC-GGA
* **
95541163 TCTCTTTATTCTAGA
1 TTTCTTTATTCCGGA
*
95541178 TTTCTTTATTCCGGG
1 TTTCTTTATTCCGGA
* *
95541193 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-CGGA
95541208 TTTCTTTA
1 TTTCTTTA
95541216 ATCGGTTTTC
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
14 2 0.05
15 36 0.90
16 2 0.05
ACGTcount: A:0.13, C:0.19, G:0.12, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCCGGA
Found at i:95543666 original size:46 final size:46
Alignment explanation
Indices: 95543613--95543788 Score: 139
Period size: 46 Copynumber: 3.8 Consensus size: 46
95543603 TATTTGGGCA
95543613 TCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATG
* * * * * *
95543659 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAA-T--G
* * *
95543704 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATG
* * *
95543752 CCCGAGA-TCGTTGATTTGAG-CCCGAGTTCGCTTATGG
1 TCCGA-ACTCGTTGAGTTGAGTCCC-AGTTCACTTATGG
95543789 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 18, Indels: 22
0.72 0.13 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 54 0.53
47 29 0.29
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATG
Found at i:95543771 original size:93 final size:93
Alignment explanation
Indices: 95543609--95543781 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
95543599 GGGATATTTG
* * *
95543609 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
**
95543674 TTGAGTTCGAGTTCGTGAAATGTAACTA
66 TTGAGCCCGAGTTCGTGAAATGTAACTA
*
95543702 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGA-TCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACCTATGGATGCGAACGCCCGA-ACTCGTTGA
*
95543766 TTTGAGCCCGAGTTCG
65 GTTGAGCCCGAGTTCG
95543782 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGCCCGAGTTCGTGAAATGTAACTA
Found at i:95547289 original size:28 final size:29
Alignment explanation
Indices: 95547258--95547317 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
95547248 AAAGTGATTT
* *
95547258 TTGACAAAAATGTCAATTAGGGA-TTAAA
1 TTGACAAAAATGTAAATTAAGGAGTTAAA
* *
95547286 TTGAGAAAAGTGTAAATTAAGGAGTTAAA
1 TTGACAAAAATGTAAATTAAGGAGTTAAA
95547315 TTG
1 TTG
95547318 TGGAATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.45, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTAAGGAGTTAAA
Found at i:95548879 original size:41 final size:43
Alignment explanation
Indices: 95548801--95548898 Score: 130
Period size: 41 Copynumber: 2.3 Consensus size: 43
95548791 TCCTAGACGT
* *
95548801 GGTCTTACATGTAATCACATACCGATGCCACTATCCCAGACAA
1 GGTCTTACACGTAATCAAATACCGATGCCACTATCCCAGACAA
* *
95548844 GGTCTTACACG-AATCAAATA-CGATGCCGA-TGTCCCAGACAT
1 GGTCTTACACGTAATCAAATACCGATGCC-ACTATCCCAGACAA
95548885 GGTCTTACACGTAA
1 GGTCTTACACGTAA
95548899 CCACATATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 28 0.57
42 11 0.22
43 10 0.20
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATACCGATGCCACTATCCCAGACAA
Found at i:95550406 original size:20 final size:20
Alignment explanation
Indices: 95550378--95550439 Score: 70
Period size: 25 Copynumber: 2.9 Consensus size: 20
95550368 ATGCAAATAA
95550378 ATGTCTTTAAATTGAATTGT
1 ATGTCTTTAAATTGAATTGT
*
95550398 ATGTGTTTACTTGACATTGAATTGT
1 ATGTCTTTA----A-ATTGAATTGT
95550423 ATGTCTTTAAATTGAAT
1 ATGTCTTTAAATTGAAT
95550440 GTGGAACGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
20 15 0.43
21 1 0.03
24 1 0.03
25 18 0.51
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (20 bp):
ATGTCTTTAAATTGAATTGT
Found at i:95550649 original size:43 final size:43
Alignment explanation
Indices: 95550553--95550707 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 43
95550543 ATCTAGATAT
* * * *
95550553 GATTACATGTAAGACCATGTCTGGGACATCGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
*
95550596 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGA
** * * *
95550639 GATTTTGTGTAAGACCCTGTCAGGGACAGTGGCATCG-ATATGTA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA-ATG-A
* * *
95550683 -ATAACATGTAAGACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
95550708 TATGGAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 84 0.93
44 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
Found at i:95553797 original size:47 final size:47
Alignment explanation
Indices: 95553728--95553849 Score: 138
Period size: 48 Copynumber: 2.6 Consensus size: 47
95553718 TCTCATATCG
*
95553728 ATGTCATGTCCCAGACATGGTCTTCACA-AAATCACATATCGATGCCA
1 ATGTCATATCCCAGACATGGTCTT-ACAGAAATCACATATCGATGCCA
* ** *
95553775 ATGTCATATCCCAGATATGGTCTTACATGGGATCACATATTGATGCCA
1 ATGTCATATCCCAGACATGGTCTTACA-GAAATCACATATCGATGCCA
* * * *
95553823 ATGCCATGTCCAAGACGTGGTCTTACA
1 ATGTCATATCCCAGACATGGTCTTACA
95553850 TGGGATCACA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 3 0.05
47 22 0.35
48 38 0.60
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGTCATATCCCAGACATGGTCTTACAGAAATCACATATCGATGCCA
Found at i:95553844 original size:48 final size:48
Alignment explanation
Indices: 95553758--95553859 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
95553748 TCTTCACAAA
* * *
95553758 ATCACATATCGATGCCAATGTCATATCCCAGATATGGTCTTACATGGG
1 ATCACATATCGATGCCAATGCCATATCCAAGACATGGTCTTACATGGG
* * *
95553806 ATCACATATTGATGCCAATGCCATGTCCAAGACGTGGTCTTACATGGG
1 ATCACATATCGATGCCAATGCCATATCCAAGACATGGTCTTACATGGG
95553854 ATCACA
1 ATCACA
95553860 CATAACACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (48 bp):
ATCACATATCGATGCCAATGCCATATCCAAGACATGGTCTTACATGGG
Found at i:95559965 original size:37 final size:37
Alignment explanation
Indices: 95559894--95559970 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
95559884 ATTACGAAGC
* * * *
95559894 CTTACCCGGACATAATCTCCGCACGAAGTTATCGGGT
1 CTTACCCGGACAAAATCCCCACACGAAGTCATCGGGT
*
95559931 CTTACCCGGACAAAATCCCCACACGTAGTCATCGGGT
1 CTTACCCGGACAAAATCCCCACACGAAGTCATCGGGT
95559968 CTT
1 CTT
95559971 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CTTACCCGGACAAAATCCCCACACGAAGTCATCGGGT
Found at i:95560167 original size:47 final size:47
Alignment explanation
Indices: 95560089--95560617 Score: 648
Period size: 47 Copynumber: 10.7 Consensus size: 47
95560079 CCCTTCGGGA
* * * * * * *
95560089 CTTATCACATTTATAAACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95560136 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95560183 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** **
95560230 CTTATCACATATATACA-TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TA----GGC
*
95560293 CTTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95560342 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95560389 CTTATCACATATATAAACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
95560438 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95560485 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
95560534 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
95560583 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
95560618 AGAATCCTAA
Statistics
Matches: 429, Mismatches: 26, Indels: 54
0.84 0.05 0.11
Matches are distributed among these distances:
46 3 0.01
47 220 0.51
49 150 0.35
50 1 0.00
51 3 0.01
54 5 0.01
55 3 0.01
56 6 0.01
57 3 0.01
58 5 0.01
61 1 0.00
62 1 0.00
63 13 0.03
65 13 0.03
66 2 0.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95560252 original size:16 final size:17
Alignment explanation
Indices: 95560230--95560271 Score: 70
Period size: 16 Copynumber: 2.6 Consensus size: 17
95560220 GCCATTAGGC
95560230 CTTATCACATATATACA
1 CTTATCACATATATACA
95560247 -TTATCACATATATACA
1 CTTATCACATATATACA
95560263 CTT-TCACAT
1 CTTATCACAT
95560272 TCATCACATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 22 0.92
17 2 0.08
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (17 bp):
CTTATCACATATATACA
Found at i:95560258 original size:63 final size:63
Alignment explanation
Indices: 95560184--95560307 Score: 248
Period size: 63 Copynumber: 2.0 Consensus size: 63
95560174 CCATTAGGCC
95560184 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
95560247 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
95560308 TACACTTTCA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (63 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:95560316 original size:49 final size:49
Alignment explanation
Indices: 95560247--95560596 Score: 613
Period size: 49 Copynumber: 7.3 Consensus size: 49
95560237 CATATATACA
95560247 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
95560294 TTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGCC
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
95560343 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
95560390 TTATCACATATATAAACACTTTCACATTTATCACATCGGCCATTAGGCC
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
95560439 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
95560486 TTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
95560535 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
95560584 TTATCTCATATAT
1 TTATCACATATAT
95560597 GCATGTTCAC
Statistics
Matches: 288, Mismatches: 9, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
47 98 0.34
49 190 0.66
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:95560357 original size:96 final size:96
Alignment explanation
Indices: 95560247--95560596 Score: 646
Period size: 96 Copynumber: 3.6 Consensus size: 96
95560237 CATATATACA
95560247 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
95560312 CTTTCACATTTATCACATCGGCCATTAGGCC
66 CTTTCACATTTATCACATCGGCCATTAGGCC
*
95560343 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
95560408 CTTTCACATTTATCACATCGGCCATTAGGCC
66 CTTTCACATTTATCACATCGGCCATTAGGCC
*
95560439 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATACA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
*
95560504 CTTTCACATTCATCACATCGGCCATTAGGCC
66 CTTTCACATTTATCACATCGGCCATTAGGCC
*
95560535 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
95560597 GCATGTTCAC
Statistics
Matches: 246, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
96 195 0.79
98 51 0.21
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (96 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
CTTTCACATTTATCACATCGGCCATTAGGCC
Found at i:95560606 original size:145 final size:143
Alignment explanation
Indices: 95560247--95560617 Score: 622
Period size: 145 Copynumber: 2.6 Consensus size: 143
95560237 CATATATACA
95560247 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
*
95560310 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
95560375 ATCGGCCATTAGGCC
129 ATCGGCCATTAGGCC
* *
95560390 TTATCACATATATAAACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
95560455 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCAC
95560520 ATCGGCCATTAGGCC
129 ATCGGCCATTAGGCC
* *
95560535 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
95560600 -TGTTCACATCCATCACAT
66 CT-TTCACATTCATCACAT
95560618 AGAATCCTAA
Statistics
Matches: 215, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
143 54 0.25
144 1 0.00
145 160 0.74
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (143 bp):
TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCC
Found at i:95563553 original size:40 final size:40
Alignment explanation
Indices: 95563509--95564010 Score: 668
Period size: 40 Copynumber: 12.6 Consensus size: 40
95563499 CCAGCATGAT
* * * * * *
95563509 TGCTCTTCGGGACCTAGCCCAGATATAACACCAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
95563549 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
95563589 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
95563629 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
95563669 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
95563709 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
95563749 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
95563789 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
95563829 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
95563869 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * * *
95563909 TGCTCTTCGGAACTTAGCCCGGTTATAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* ** * * *
95563950 TGC-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
95563990 TGC-CTTCGGG-CTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
95564011 ATTAGTAACT
Statistics
Matches: 415, Mismatches: 46, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
39 10 0.02
40 392 0.94
41 13 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:95563997 original size:120 final size:120
Alignment explanation
Indices: 95563509--95564090 Score: 667
Period size: 120 Copynumber: 4.9 Consensus size: 120
95563499 CCAGCATGAT
* * * * * * * *** *
95563509 TGCTCTTCGGGACCTAGCCCAGATATAACACCAACACGAATGCTCTTTGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
* * * *
95563574 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
66 CATCACTAGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
95563629 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
** *
95563694 CATCACTAGCATGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
66 CATCACTAGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
95563749 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GAGACTTAGCCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGA-ACTTAGCCCGGAT
* * *
95563813 ACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
65 ACATCACTAGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
95563869 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGTTA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
* * * * ** * * *
95563934 TAGTAACTCGCACAAATGC-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAA
66 CA-TCACTAGCACAAATGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * * * * *
95563990 TGC-CTTCGGG-CTTAGCCCGGAATTA-GTAACTCGCACAAATGC-CTTCGGATCTTAGTCCGGA
1 TGCTCTTCGGGACTTAGCCCGG-A-TACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGA
** *
95564051 TATGGTCACTTAGCACAAA-GC-CTTCGGGACTTAGCTCGGA
64 TA-CATCAC-TAGCACAAATGCTCTTCGGGACTTAGCCCGGA
95564091 CATCATTCGA
Statistics
Matches: 404, Mismatches: 50, Indels: 17
0.86 0.11 0.04
Matches are distributed among these distances:
119 52 0.13
120 323 0.80
121 29 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
CATCACTAGCACAAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:95564084 original size:40 final size:39
Alignment explanation
Indices: 95563509--95564090 Score: 584
Period size: 40 Copynumber: 14.6 Consensus size: 39
95563499 CCAGCATGAT
* * * * * *
95563509 TGCTCTTCGGGACCTAGCCCAGATATAACACCAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC-AA
* ** * *
95563549 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC-AA
* *
95563589 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA-CAA
95563629 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC-AA
* *
95563669 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA-CAA
*
95563709 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC-AA
* *
95563749 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA-CAA
*
95563789 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC-AA
* *
95563829 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA-CAA
95563869 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC-AA
* * * * *
95563909 TGCTCTTCGGAACTTAGCCCGGTTATAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCAC-AA
* ** * *
95563950 TGC-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCA-CAA
* * *
95563990 TGC-CTTCGGG-CTTAGCCCGGAATTA-GTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGG-A-TACATCACTAGCAC-AA
* **
95564029 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACAA
* *
95564069 AGC-CTTCGGGACTTAGCTCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
95564091 CATCATTCGA
Statistics
Matches: 470, Mismatches: 53, Indels: 38
0.84 0.09 0.07
Matches are distributed among these distances:
38 5 0.01
39 28 0.06
40 414 0.88
41 23 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACAA
Found at i:95566020 original size:37 final size:37
Alignment explanation
Indices: 95565947--95566025 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
95565937 TTATTACGAA
* * * * *
95565947 GTCTTACCCGGACATAATCTCCGCACGAAGTTATCGG
1 GTCTTACCCGGAAAAAATCCCCACACGAAGTCATCGG
* *
95565984 GTCTTACCCGGAAAAAATCCCCACATGTAGTCATCGG
1 GTCTTACCCGGAAAAAATCCCCACACGAAGTCATCGG
95566021 GTCTT
1 GTCTT
95566026 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGAAAAAATCCCCACACGAAGTCATCGG
Found at i:95566222 original size:47 final size:47
Alignment explanation
Indices: 95566144--95566574 Score: 488
Period size: 47 Copynumber: 8.7 Consensus size: 47
95566134 CCCTTCAGGA
* * * * * *
95566144 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95566191 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95566238 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95566285 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** **
95566332 CTTATCACATATATACA-TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TA----GGC
*
95566395 CTTATCACATATATAAACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
95566444 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95566491 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGTC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
95566540 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
95566575 AGAATCCTAA
Statistics
Matches: 335, Mismatches: 26, Indels: 46
0.82 0.06 0.11
Matches are distributed among these distances:
46 3 0.01
47 213 0.64
49 64 0.19
50 1 0.00
51 2 0.01
54 5 0.01
55 3 0.01
56 6 0.02
57 3 0.01
58 5 0.01
61 1 0.00
62 1 0.00
63 19 0.06
65 7 0.02
66 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95566354 original size:16 final size:17
Alignment explanation
Indices: 95566332--95566373 Score: 70
Period size: 16 Copynumber: 2.6 Consensus size: 17
95566322 GCCATTAGGC
95566332 CTTATCACATATATACA
1 CTTATCACATATATACA
95566349 -TTATCACATATATACA
1 CTTATCACATATATACA
95566365 CTT-TCACAT
1 CTTATCACAT
95566374 TCATCACATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 22 0.92
17 2 0.08
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (17 bp):
CTTATCACATATATACA
Found at i:95566360 original size:63 final size:63
Alignment explanation
Indices: 95566286--95566409 Score: 248
Period size: 63 Copynumber: 2.0 Consensus size: 63
95566276 CCATTAGGCC
95566286 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
95566349 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
95566410 AACACTTTCA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (63 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:95566367 original size:110 final size:112
Alignment explanation
Indices: 95566238--95566469 Score: 416
Period size: 110 Copynumber: 2.1 Consensus size: 112
95566228 GCCATTAGGC
*
95566238 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACA
95566302 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
95566349 -TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-AAC
*
95566413 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
95566461 CTT-TCACAT
1 CTTATCACAT
95566470 TCATCACATC
Statistics
Matches: 116, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
110 59 0.51
112 55 0.47
113 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.33
Consensus pattern (112 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:95566419 original size:49 final size:47
Alignment explanation
Indices: 95566349--95566574 Score: 355
Period size: 49 Copynumber: 4.7 Consensus size: 47
95566339 CATATATACA
95566349 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
95566396 TTATCACATATATAAACACTTTCACATTTATCACATCGGCCATTAGGCC
1 TTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCC
95566445 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
95566492 TTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGTCC
1 TTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
95566541 TTATCTCATATATGCA-TGTTCACATCCATCACAT
1 TTATCACATATATACACT-TTCACATTCATCACAT
95566575 AGAATCCTAA
Statistics
Matches: 168, Mismatches: 6, Indels: 10
0.91 0.03 0.05
Matches are distributed among these distances:
46 1 0.01
47 76 0.45
49 91 0.54
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Done.