Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 294 of 356
Found at i:95566482 original size:159 final size:158
Alignment explanation
Indices: 95566195--95566518 Score: 580
Period size: 159 Copynumber: 2.0 Consensus size: 158
95566185 CTCGGCCCTG
*
95566195 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
95566260 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
95566325 ATTAGGCCTTATCACA-TATATACA-TT
131 ATTAGGCCTTATCACAGTATATACACTT
95566351 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACACT
1 -TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--ACACT
*
95566416 TTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
63 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
95566481 GCCATTAGGCCTTATCACATGTATATACACTT
128 GCCATTAGGCCTTATCACA-GTATATACACTT
95566513 TCACAT
1 TCACAT
95566519 TCATCACATC
Statistics
Matches: 160, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
157 57 0.36
159 87 0.54
161 14 0.09
162 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (158 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACAGTATATACACTT
Found at i:95576111 original size:34 final size:34
Alignment explanation
Indices: 95576073--95576138 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
95576063 GTTTTCATAA
95576073 TTTAGTTTATTTGTTTCTTCAAGAGATCTGATAG
1 TTTAGTTTATTTGTTTCTTCAAGAGATCTGATAG
*
95576107 TTTAGTTTATTTGTTTTTTCAAGAGATCTGAT
1 TTTAGTTTATTTGTTTCTTCAAGAGATCTGAT
95576139 TGTAAAACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.53
Consensus pattern (34 bp):
TTTAGTTTATTTGTTTCTTCAAGAGATCTGATAG
Found at i:95576689 original size:21 final size:20
Alignment explanation
Indices: 95576647--95576704 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
95576637 ATTCAGTCTA
*
95576647 TTTATATTTATCTTTTGCAAT
1 TTTA-ATTTATTTTTTGCAAT
*
95576668 TTTAATTTATTTTTATGTAAT
1 TTTAATTTATTTTT-TGCAAT
95576689 TTTAATTTATTATTTT
1 TTTAATTTATT-TTTT
95576705 ATAGACCGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.27
21 21 0.64
22 3 0.09
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TTTAATTTATTTTTTGCAAT
Found at i:95586284 original size:43 final size:43
Alignment explanation
Indices: 95586236--95586347 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
95586226 CAACTGTTCA
* * * *
95586236 GTGAAAC-GAACAAATATTATATATGTTTGCTCAGCACTGATTG
1 GTGAAACTG-ACAAATATTATACATGTGTGCCCAGCACTGATCG
*
95586279 GTGAAACTGACAAATATTATACATGTGTGCCCAGCACTGGTCG
1 GTGAAACTGACAAATATTATACATGTGTGCCCAGCACTGATCG
* *
95586322 GTGAAACCT-ATAAATATTTTACATGT
1 GTGAAA-CTGACAAATATTATACATGT
95586348 CCTATAACAC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
43 57 0.95
44 3 0.05
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (43 bp):
GTGAAACTGACAAATATTATACATGTGTGCCCAGCACTGATCG
Found at i:95588605 original size:27 final size:27
Alignment explanation
Indices: 95588574--95588751 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
95588564 TAAATTGTAC
*
95588574 AGCACTAAGTGTGCGATTTGACTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
95588601 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
95588627 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
95588655 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
95588683 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
95588710 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
95588737 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
95588752 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:95588690 original size:82 final size:81
Alignment explanation
Indices: 95588575--95588730 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
95588565 AAATTGTACA
* *
95588575 GCACTAAGTGTGCGATTTGACTACGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
95588639 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
95588656 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTACGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
95588721 TGCGAGTTGA
65 TGCGAATTGA
95588731 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:95588742 original size:82 final size:81
Alignment explanation
Indices: 95588571--95588751 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
95588561 GATTAAATTG
* *
95588571 TACAGCACTAAGTGTGCGATTTGACTACGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
95588636 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
95588652 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTACGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
95588716 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
95588734 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
95588752 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:95593481 original size:47 final size:47
Alignment explanation
Indices: 95593403--95593710 Score: 458
Period size: 47 Copynumber: 6.6 Consensus size: 47
95593393 CCCTTCGGGA
* * * * * * *
95593403 CTTATCACATTTATACACTTTCGCATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95593450 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95593497 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95593544 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95593591 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95593640 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95593687 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
95593711 CACAATTATC
Statistics
Matches: 239, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 7 0.03
47 187 0.78
49 45 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95593641 original size:96 final size:96
Alignment explanation
Indices: 95593403--95593701 Score: 471
Period size: 96 Copynumber: 3.2 Consensus size: 96
95593393 CCCTTCGGGA
* * * * * *
95593403 CTTATCACAT-T-TATACACTTTCGCATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
95593466 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
95593497 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
95593560 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
95593591 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
95593656 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
95593687 CTTATCACATATATA
1 CTTATCACATATATA
95593702 CATTCACATC
Statistics
Matches: 186, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
93 1 0.01
94 88 0.47
96 97 0.52
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95593659 original size:143 final size:141
Alignment explanation
Indices: 95593403--95593711 Score: 478
Period size: 143 Copynumber: 2.2 Consensus size: 141
95593393 CCCTTCGGGA
* * * * * *
95593403 CTTATCACATTTATACACTTTCGCATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
95593468 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
95593533 GGCTATTAGGC
131 GGCTATTAGGC
* * *
95593544 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
* * *
95593609 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
95593674 TCGGCTATTAGGC
129 TCGGCTATTAGGC
95593687 CTTATCACATATATACA--TTCACATC
1 CTTATCACATATATACACTTTCACATC
95593712 ACAATTATCC
Statistics
Matches: 153, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
141 53 0.35
143 100 0.65
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
GGCTATTAGGC
Found at i:95597329 original size:40 final size:40
Alignment explanation
Indices: 95597284--95597519 Score: 341
Period size: 40 Copynumber: 5.9 Consensus size: 40
95597274 CGAATACACG
* * *
95597284 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** * **
95597324 ACACCAGCACAAATGCT-TTCGAGG-TTTAGCAAGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATATA
* *
95597363 TCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
95597403 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
95597443 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
95597483 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
95597520 CATTGTCGAG
Statistics
Matches: 177, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 31 0.18
40 146 0.82
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:95597510 original size:120 final size:119
Alignment explanation
Indices: 95597284--95597519 Score: 339
Period size: 119 Copynumber: 2.0 Consensus size: 119
95597274 CGAATACACG
* *
95597284 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTTTCGAGGT
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTTTCGAGGC
*
95597349 TTAGCAAGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATATA
66 TTAGCAAGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * **
95597403 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCG-GG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCT-TTCGAGG
** *
95597467 ACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
65 -CTTAGCAAGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
95597520 CATTGTCGAG
Statistics
Matches: 103, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 52 0.50
120 51 0.50
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (119 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTTTCGAGGC
TTAGCAAGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:95597646 original size:38 final size:38
Alignment explanation
Indices: 95597577--95597651 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
95597567 GAATTTTAAT
*
95597577 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
95597615 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
95597652 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:95599862 original size:47 final size:47
Alignment explanation
Indices: 95599784--95600232 Score: 677
Period size: 47 Copynumber: 9.6 Consensus size: 47
95599774 CCCTTCGGGA
* * * * * * *
95599784 CTTATCACATTTATACACTTTCGCATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95599831 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
95599878 CTCATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95599925 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95599972 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
95600021 CTTATCACATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95600068 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95600115 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95600162 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95600209 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
95600233 CACAATTATC
Statistics
Matches: 374, Mismatches: 26, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
45 7 0.02
47 323 0.86
49 44 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95600199 original size:237 final size:237
Alignment explanation
Indices: 95599784--95600223 Score: 765
Period size: 237 Copynumber: 1.9 Consensus size: 237
95599774 CCCTTCGGGA
* * * *
95599784 CTTATCACATTTATACACTTTCGCATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
95599849 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
95599914 AGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG-TCATTAGGCCTTATC
131 AGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCT-ATTAGGCCTTATC
95599978 ACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
195 ACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
95600021 CTTATCACATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
* *
95600086 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
*
95600151 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
131 AGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
95600216 CATATATA
196 CATATATA
95600224 CATTCACATC
Statistics
Matches: 191, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
237 190 0.99
238 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
AGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
CATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:95612372 original size:25 final size:23
Alignment explanation
Indices: 95612335--95612389 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
95612325 ATATTAAAAG
*
95612335 AAATATTGTAAATTGTAAATTTTAA
1 AAATATTGGAAA-T-TAAATTTTAA
* *
95612360 AATTATTGGAAATTATATTTTAA
1 AAATATTGGAAATTAAATTTTAA
95612383 AAATATT
1 AAATATT
95612390 TGTTACTAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 15 0.58
24 1 0.04
25 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (23 bp):
AAATATTGGAAATTAAATTTTAA
Found at i:95612751 original size:75 final size:75
Alignment explanation
Indices: 95612662--95612812 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 75
95612652 ATATTAATTG
*
95612662 AATGAATTAAGTTGGGTAAAATTACCATGGAGGTCTTTATACTAAGAATCAGATTGCATTTTGTC
1 AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGATTGCATTTTGTC
95612727 TCCTTAAAAA
66 TCCTTAAAAA
* *
95612737 AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGGTTGCATTTTGTG
1 AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGATTGCATTTTGTC
95612802 TCCTTAAAAA
66 TCCTTAAAAA
95612812 A
1 A
95612813 TTGACAAATT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (75 bp):
AATGAATTAAGTTGGGTAAAAATACCATGGAGGTCTTTATACTAAGAATCAGATTGCATTTTGTC
TCCTTAAAAA
Found at i:95616273 original size:3 final size:3
Alignment explanation
Indices: 95616267--95616329 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
95616257 TAGTATGATG
* *
95616267 ATA ATA ATA ATA GA-A GTA ATA ATA A-A AAA ATAA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
*
95616312 A-A TACA ATA ATA ATA ATA
1 ATA -ATA ATA ATA ATA ATA
95616330 TAAAAAATGT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
2 3 0.06
3 42 0.84
4 5 0.10
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:95616302 original size:15 final size:18
Alignment explanation
Indices: 95616267--95616329 Score: 76
Period size: 18 Copynumber: 3.5 Consensus size: 18
95616257 TAGTATGATG
*
95616267 ATAATAAT-AATAGAAGTA
1 ATAATAATAAATACAA-TA
*
95616285 ATAATAAAAAAATA-AATA
1 ATAAT-AATAAATACAATA
95616303 ATAATAATAAATACAATA
1 ATAATAATAAATACAATA
95616321 ATAATAATA
1 ATAATAATA
95616330 TAAAAAATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
17 7 0.17
18 25 0.62
19 4 0.10
20 4 0.10
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (18 bp):
ATAATAATAAATACAATA
Found at i:95616307 original size:21 final size:20
Alignment explanation
Indices: 95616283--95616336 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 20
95616273 ATAATAGAAG
95616283 TAATAATAAAAAAATAAATAA
1 TAATAATAAAAAAAT-AATAA
*
95616304 TAATAATAAATACAATAATAA
1 TAATAATAAA-AAAATAATAA
95616325 TAAT-ATAAAAAA
1 TAATAATAAAAAA
95616337 TGTCTAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 2 0.07
20 5 0.17
21 19 0.63
22 4 0.13
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (20 bp):
TAATAATAAAAAAATAATAA
Found at i:95618197 original size:28 final size:28
Alignment explanation
Indices: 95618130--95618197 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
95618120 CTTTTATGAG
*
95618130 TAAAAAC--TATAAGTTAAGGGCTTATT
1 TAAAAACAATATAGGTTAAGGGCTTATT
*
95618156 TAACTAAA-AA-ATAGGTTAAGGGCTTGTT
1 TAA--AAACAATATAGGTTAAGGGCTTATT
95618184 TAAAAACAATATAG
1 TAAAAACAATATAG
95618198 TGAGTTGAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
26 6 0.18
27 2 0.06
28 26 0.76
ACGTcount: A:0.46, C:0.07, G:0.16, T:0.31
Consensus pattern (28 bp):
TAAAAACAATATAGGTTAAGGGCTTATT
Found at i:95619096 original size:45 final size:44
Alignment explanation
Indices: 95619017--95619139 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 44
95619007 TATTTATAGC
* * *
95619017 TTCAATCTGTTCCACTG-CATCTTCAGGGATATAAGA-TTCGCTATT
1 TTCAATCTGCTCCACTGCCA-CTTCAAGGAGATAAGACTT-GCTA-T
*
95619062 TTCAGTCTGCTCCACTGCCACTTCAAGGAGATAAGACTTGCTAT
1 TTCAATCTGCTCCACTGCCACTTCAAGGAGATAAGACTTGCTAT
* *
95619106 CTCAATCTGCTCCACTGCTACTTC-AGAGAGATAA
1 TTCAATCTGCTCCACTGCCACTTCAAG-GAGATAA
95619140 AGCTAGTGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
43 2 0.03
44 29 0.43
45 33 0.49
46 4 0.06
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCCACTTCAAGGAGATAAGACTTGCTAT
Found at i:95632452 original size:29 final size:28
Alignment explanation
Indices: 95632416--95632493 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
95632406 TCATGAGATT
95632416 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
95632446 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
95632473 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
95632494 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:95632711 original size:174 final size:174
Alignment explanation
Indices: 95632446--95632948 Score: 943
Period size: 174 Copynumber: 2.9 Consensus size: 174
95632436 AAATTGTACA
*
95632446 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
95632511 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
95632576 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
95632620 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
95632685 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
95632750 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
95632794 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
95632859 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
95632924 TTTTGGACAGCGGAAAAAGGTAAGT
131 TTTTGGACAGCGG-AAAAGGTAAGT
95632949 ACCTTGAGTT
Statistics
Matches: 320, Mismatches: 8, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
174 309 0.97
175 11 0.03
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:95640764 original size:29 final size:28
Alignment explanation
Indices: 95640728--95640799 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
95640718 TCATGAGATT
*
95640728 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
95640758 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
95640785 TGGCACTAAGTGTGC
1 -GGCACTAAGTGTGC
95640800 ACGGTTGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:95641023 original size:174 final size:174
Alignment explanation
Indices: 95640758--95641259 Score: 941
Period size: 174 Copynumber: 2.9 Consensus size: 174
95640748 AAATTGTACA
* *
95640758 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
95640823 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
95640888 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
95640932 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
95640997 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
95641062 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
95641106 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
95641171 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
95641236 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
95641260 ACCTTGAGTT
Statistics
Matches: 319, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 319 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:95643425 original size:22 final size:21
Alignment explanation
Indices: 95643376--95643414 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
95643366 GTTGAAATAG
95643376 AATG-TAA-AAATAATTTAAA
1 AATGATAATAAATAATTTAAA
95643395 AATGATAATAAATGAATTTA
1 AATGATAATAAAT-AATTTA
95643415 TAATATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 3 0.18
21 4 0.24
22 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
AATGATAATAAATAATTTAAA
Found at i:95643909 original size:22 final size:20
Alignment explanation
Indices: 95643870--95643932 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 20
95643860 TGATGATGAT
*
95643870 AATAATAGAAGTAATAAAAAA
1 AATAATA-AAATAATAAAAAA
95643891 AATAAT-AAATAATAATAAATA
1 AATAATAAAATAATAA-AAA-A
95643912 CAATAATAAAAT-ATAAAAAA
1 -AATAATAAAATAATAAAAAA
95643932 A
1 A
95643933 GTCCAATTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
19 9 0.24
20 4 0.11
21 10 0.27
22 10 0.27
23 4 0.11
ACGTcount: A:0.73, C:0.02, G:0.03, T:0.22
Consensus pattern (20 bp):
AATAATAAAATAATAAAAAA
Found at i:95644903 original size:11 final size:11
Alignment explanation
Indices: 95644887--95644920 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
95644877 CGTGGGCACT
*
95644887 GACGTGGGGCG
1 GACGTGGCGCG
*
95644898 GACGTGGTGCG
1 GACGTGGCGCG
95644909 GACGTGGCGCG
1 GACGTGGCGCG
95644920 G
1 G
95644921 TGGAGCAGCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.21, G:0.59, T:0.12
Consensus pattern (11 bp):
GACGTGGCGCG
Found at i:95647540 original size:21 final size:21
Alignment explanation
Indices: 95647493--95647541 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
95647483 TTATAGCAAC
95647493 AGAAAATTAATTTAAATTTAT
1 AGAAAATTAATTTAAATTTAT
* *
95647514 ATGAAAA-TAATTTGAATTATTT
1 A-GAAAATTAATTTAAATT-TAT
95647536 AGAAAA
1 AGAAAA
95647542 AAAAGATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (21 bp):
AGAAAATTAATTTAAATTTAT
Found at i:95647823 original size:18 final size:21
Alignment explanation
Indices: 95647777--95647825 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
95647767 AAGTTTTATA
95647777 TAATATCA-TTTTTTAAACAAT
1 TAAT-TCACTTTTTTAAACAAT
95647798 TAATTCACTTTTTT-AA-AAT
1 TAATTCACTTTTTTAAACAAT
95647817 T-ATTCACTT
1 TAATTCACTT
95647826 CCATATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 8 0.30
19 4 0.15
20 5 0.19
21 10 0.37
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATTCACTTTTTTAAACAAT
Found at i:95649130 original size:3 final size:3
Alignment explanation
Indices: 95649124--95649152 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
95649114 CTACTACAGC
95649124 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
95649153 ATTCATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:95649304 original size:37 final size:38
Alignment explanation
Indices: 95649245--95649316 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 38
95649235 TTAATGTTGG
* *
95649245 TTAAAATATGTCTTATTATATTTTTAGTAAATTTAAAAT
1 TTAAAATATGTATTATTATATTTATAG-AAATTTAAAAT
*
95649284 TTAATATATGTATT-TT-TATTTATAGAAATTTAA
1 TTAAAATATGTATTATTATATTTATAGAAATTTAA
95649317 TTACTCTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 8 0.27
37 8 0.27
38 2 0.07
39 12 0.40
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (38 bp):
TTAAAATATGTATTATTATATTTATAGAAATTTAAAAT
Found at i:95649341 original size:29 final size:27
Alignment explanation
Indices: 95649276--95649344 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 27
95649266 TTTTAGTAAA
*
95649276 TTTAAAATTTAATATATGTATTTTTAT
1 TTTAAAATTTAATATATCTATTTTTAT
95649303 TTATAGAAATTTAAT-TACTCTATTTTTTAAT
1 TT-TA-AAATTTAATATA-TCTA-TTTTT-AT
95649334 TTTAAAATTTA
1 TTTAAAATTTA
95649345 TGTTCAATTG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
27 2 0.06
28 4 0.11
29 19 0.53
30 7 0.19
31 4 0.11
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (27 bp):
TTTAAAATTTAATATATCTATTTTTAT
Found at i:95656391 original size:18 final size:18
Alignment explanation
Indices: 95656351--95656403 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
95656341 CAGTTACTTT
* *
95656351 ATAACAGTCAGTTATACA
1 ATAACAGTCAATTATTCA
*
95656369 ATAACAGTCATTTATTCA
1 ATAACAGTCAATTATTCA
* *
95656387 GTAACATTCAATTATTC
1 ATAACAGTCAATTATTC
95656404 CATAGCAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.36
Consensus pattern (18 bp):
ATAACAGTCAATTATTCA
Found at i:95656559 original size:6 final size:6
Alignment explanation
Indices: 95656545--95656579 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
95656535 CACCGCAACG
* *
95656545 GTAACA GTAATA GTAACA GTAACA GTCACA GTAAC
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAAC
95656580 GGTACACAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:95662843 original size:6 final size:6
Alignment explanation
Indices: 95662832--95662864 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
95662822 CACTACAATG
95662832 GTAACA GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTA
95662865 CACAAAGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:95673836 original size:21 final size:21
Alignment explanation
Indices: 95673801--95673861 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
95673791 CACTTAAAAC
95673801 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
95673821 AGGGCAACATGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
* *
95673842 AGGGAAACACGCCAGTGTGG
1 AGGGCAACACGCCCGTGTGG
95673862 CCATTATGAC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 5 0.14
21 31 0.86
ACGTcount: A:0.25, C:0.25, G:0.39, T:0.11
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:95675144 original size:49 final size:49
Alignment explanation
Indices: 95675091--95675207 Score: 130
Period size: 49 Copynumber: 2.4 Consensus size: 49
95675081 GTCGATGTCG
* *
95675091 TGTCCCAAACAGTTCTTACACT-GACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAAACAGGTCTTACACTAG-CTCTCATATATCG-GTGCCGATGCCA
* * *
95675140 TGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGGTGTCGATGCCA
1 TGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCA
** *
95675189 TGTCGTAGACAGGTCTTAC
1 TGTCCCAAACAGGTCTTAC
95675208 GCTAACACAC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 57 0.97
50 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (49 bp):
TGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCA
Found at i:95680504 original size:21 final size:21
Alignment explanation
Indices: 95680464--95680507 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
95680454 ACGCCCTTGC
*
95680464 GGAAGGGCAACATACCCGTGT
1 GGAAGGGCAACACACCCGTGT
* *
95680485 GGAAGGGCAACACGCTCGTGT
1 GGAAGGGCAACACACCCGTGT
95680506 GG
1 GG
95680508 CTATTATAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.25, C:0.23, G:0.39, T:0.14
Consensus pattern (21 bp):
GGAAGGGCAACACACCCGTGT
Found at i:95684574 original size:119 final size:120
Alignment explanation
Indices: 95684398--95684620 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
95684388 TACTCGTTCA
** *
95684398 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
95684463 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
* * *
95684518 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
95684580 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
95684621 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
Found at i:95684620 original size:40 final size:40
Alignment explanation
Indices: 95684396--95684620 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
95684386 GCTACTCGTT
* *
95684396 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
95684436 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
95684476 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
95684516 TC-AATGCCTTCGGG-CTTAGCCC-GAAATTAGTATCTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
95684555 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
95684596 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
95684621 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 5 0.03
39 27 0.17
40 115 0.71
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:95704183 original size:6 final size:6
Alignment explanation
Indices: 95704172--95704199 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
95704162 TTTCTTGCAA
95704172 TTTAAT TTTAAT TTTAAT TTTAAT TTTA
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTA
95704200 TTATTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:95714899 original size:41 final size:40
Alignment explanation
Indices: 95714854--95714987 Score: 121
Period size: 41 Copynumber: 3.3 Consensus size: 40
95714844 GGAAGCAATG
95714854 TGCTGGTGAATTAAATCAGGCTTTATGCCTAGCAGGCTTAT
1 TGCTGGTGAATTAAATCAGGCTTTATGCCTAGCAGGCTT-T
* * * * *
95714895 TGCTGGTGTATAAAATCAGACTTTGA-GTCTAGCAGGCCTTG
1 TGCTGGTGAATTAAATCAGGCTTT-ATGCCTAGCAGG-CTTT
* ** * *
95714936 TGCTCGTGTGTGATA-CAGGC-TTATGCCTAGCAGGCTTT
1 TGCTGGTGAATTAAATCAGGCTTTATGCCTAGCAGGCTTT
95714974 ATGCTGGTGAATTA
1 -TGCTGGTGAATTA
95714988 GTAAAAGCTT
Statistics
Matches: 73, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
38 4 0.05
39 20 0.27
40 4 0.05
41 41 0.56
42 4 0.05
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (40 bp):
TGCTGGTGAATTAAATCAGGCTTTATGCCTAGCAGGCTTT
Found at i:95722410 original size:44 final size:44
Alignment explanation
Indices: 95722345--95722720 Score: 245
Period size: 44 Copynumber: 8.5 Consensus size: 44
95722335 CGACCTACTT
* * * * *
95722345 CAACTTCAGAGG-TATAGGATTTATAGCTTTAATCTGCTCTACTG
1 CAACTTCAG-GGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
* ** * * *
95722389 CAACTTCAGAGAGATAAGATTTGCTATATTCAGTCTACTCCATTG
1 CAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTACTCCACTG
* * * * *
95722434 CAACTTCAGGGAGATAAGACTTGTA-TTTTAACCTGCCCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
* * * * * * *
95722477 CAAATTCAGGGGGATAAGGTTTGCTATCTTTGATCTATTCCACTA
1 CAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTACTCCACTG
* * * *
95722522 CAACTTCAGGGAGATAAGATCTGTAACTTCAATCTACTCCTCTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
* * * * *
95722566 CAACTTTAGGGAGATAAGGTTTGTGGCTTTAATTTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
* * * * * *
95722610 TAACTTCAGGGAGATAAAACTTGGAACTTTAA-CTTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATC-TACTCCACTG
* * * * * * * * * *
95722654 TATCTTTAGGGGGATGAGGTTTGTGGCTTTAATTTGCTCCATTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
**
95722698 TGACTTCAGGGAGATAAGATTTG
1 CAACTTCAGGGAGATAAGATTTG
95722721 CTATTGGTAG
Statistics
Matches: 249, Mismatches: 77, Indels: 12
0.74 0.23 0.04
Matches are distributed among these distances:
43 31 0.12
44 153 0.61
45 65 0.26
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.34
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCACTG
Found at i:95722448 original size:45 final size:44
Alignment explanation
Indices: 95722155--95722626 Score: 215
Period size: 44 Copynumber: 10.6 Consensus size: 44
95722145 CTACGATTTG
* * * ** *
95722155 CTCCAATGCAATTTTAGGGAGA-AGAGATTTGTAGCTTCGATCTA
1 CTCCACTGCAACTTCAGGGAGATA-AGATTTGTATATTCAATCTA
* * ** * *
95722199 CTCCGCTGGAACTTCAAAGAGATAAGACTTGGTA-ATTTCAACCTA
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTTGTATA-TTCAATCTA
* * * * * *
95722244 CTCCACTGCATCTTCAAGGAGATAAGGTTTGCGA-CTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAATCTA
* * *
95722288 CTCTACTGCAACTTCAGGGAGATAAGATTCACCATGGTA-ACTT-GATCCGA
1 CTCCACTGCAACTTCAGGGAGATAAGATT-----T-GTATA-TTCAAT-CTA
* * * * * ** * *
95722338 C-CTACTTCAACTTCAGAGG-TATAGGATTTATAGCTTTAATCTG
1 CTCCACTGCAACTTCAG-GGAGATAAGATTTGTATATTCAATCTA
* * *
95722381 CTCTACTGCAACTTCAGAGAGATAAGATTTGCTATATTCAGTCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAATCTA
* * * * *
95722426 CTCCATTGCAACTTCAGGGAGATAAGACTTGTAT-TTTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAATCTA
* * * * * **
95722469 CCCCACTGCAAATTCAGGGGGATAAGGTTTGCTATCTTTGATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TATATTCAATCTA
* * *
95722514 TTCCACTACAACTTCAGGGAGATAAGATCTGTA-ACTTCAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTATA-TTCAATCTA
* * * *** * * *
95722558 CTCCTCTGCAACTTTAGGGAGATAAGGTTTGTGGCTTTAATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAATCTA
*
95722602 CTCCACTGTAACTTCAGGGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAA
95722627 AACTTGGAAC
Statistics
Matches: 317, Mismatches: 89, Indels: 44
0.70 0.20 0.10
Matches are distributed among these distances:
43 37 0.12
44 147 0.46
45 101 0.32
49 25 0.08
50 7 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTGTATATTCAATCTA
Found at i:95723070 original size:14 final size:14
Alignment explanation
Indices: 95723053--95723084 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
95723043 TGAATTTGGG
*
95723053 TAGTTGAAACTAAT
1 TAGTTCAAACTAAT
95723067 TAGTTCAAACTAAT
1 TAGTTCAAACTAAT
95723081 TAGT
1 TAGT
95723085 CCCATTTCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (14 bp):
TAGTTCAAACTAAT
Found at i:95724877 original size:9 final size:9
Alignment explanation
Indices: 95724861--95724903 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
95724851 GGTATTTTTC
95724861 GGTAATTCG
1 GGTAATTCG
*
95724870 GTTAATTCG
1 GGTAATTCG
*
95724879 GTTAATTCG
1 GGTAATTCG
95724888 GGTAATTCG
1 GGTAATTCG
95724897 GGTAATT
1 GGTAATT
95724904 TTTAACCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.23, C:0.09, G:0.28, T:0.40
Consensus pattern (9 bp):
GGTAATTCG
Found at i:95725081 original size:12 final size:12
Alignment explanation
Indices: 95725064--95725088 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95725054 AGTAATTTCG
95725064 GGTCGGTTAACC
1 GGTCGGTTAACC
95725076 GGTCGGTTAACC
1 GGTCGGTTAACC
95725088 G
1 G
95725089 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:95728773 original size:24 final size:24
Alignment explanation
Indices: 95728746--95728807 Score: 124
Period size: 24 Copynumber: 2.6 Consensus size: 24
95728736 TTTTAGCTAG
95728746 TTGCTCTTGCATATGCGCTTGTAA
1 TTGCTCTTGCATATGCGCTTGTAA
95728770 TTGCTCTTGCATATGCGCTTGTAA
1 TTGCTCTTGCATATGCGCTTGTAA
95728794 TTGCTCTTGCATAT
1 TTGCTCTTGCATAT
95728808 CCCTTTGCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (24 bp):
TTGCTCTTGCATATGCGCTTGTAA
Found at i:95732919 original size:26 final size:27
Alignment explanation
Indices: 95732890--95732956 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
95732880 AGTTTAAAAC
95732890 AAATGATATGTAAAAT-AATTT-AAGAT
1 AAATGATATGTAAAATGAATTTAAAG-T
* **
95732916 AAATAATAAAT-AAATGAATTTAAAGT
1 AAATGATATGTAAAATGAATTTAAAGT
*
95732942 AAATGTTATGTAAAA
1 AAATGATATGTAAAA
95732957 AGAAATTCAA
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
25 4 0.13
26 21 0.68
27 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATGATATGTAAAATGAATTTAAAGT
Found at i:95733087 original size:27 final size:26
Alignment explanation
Indices: 95733030--95733139 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
95733020 TAAAAAAGGG
* ** *
95733030 ATAATACATATAAAAATTTGAAATTTG
1 ATAATACATAAAAAAATTT-AAAAGTA
*
95733057 ATAATATATAAAAAAATTTAAAAGT-
1 ATAATACATAAAAAAATTTAAAAGTA
95733082 A-AATA-ATAAAAAAATTTAAAA-TGA
1 ATAATACATAAAAAAATTTAAAAGT-A
95733106 ATAATACATAAAACAAATTTAAAAAGTAA
1 ATAATACATAAAA-AAATTT-AAAAGT-A
95733135 ATAAT
1 ATAAT
95733140 GGTACAATGC
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
22 1 0.01
23 16 0.23
24 5 0.07
25 5 0.07
26 10 0.14
27 23 0.32
28 4 0.06
29 7 0.10
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.30
Consensus pattern (26 bp):
ATAATACATAAAAAAATTTAAAAGTA
Found at i:95733108 original size:22 final size:23
Alignment explanation
Indices: 95733059--95733139 Score: 99
Period size: 23 Copynumber: 3.3 Consensus size: 23
95733049 GAAATTTGAT
95733059 AATATATAAAAAAATTTAAAAGTA
1 AATA-ATAAAAAAATTTAAAAGTA
*
95733083 AATAATAAAAAAATTTAAAATGAA
1 AATAATAAAAAAATTTAAAA-GTA
95733107 TAATACATAAAACAAATTTAAAAAGTA
1 -AATA-ATAAAA-AAATTT-AAAAGTA
95733134 AATAAT
1 AATAAT
95733140 GGTACAATGC
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
23 16 0.32
24 6 0.12
25 6 0.12
26 10 0.20
27 8 0.16
28 4 0.08
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (23 bp):
AATAATAAAAAAATTTAAAAGTA
Found at i:95746694 original size:10 final size:10
Alignment explanation
Indices: 95746679--95746739 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
95746669 ATATTGTTAT
95746679 ACATGATATG
1 ACATGATATG
95746689 ACATGATATG
1 ACATGATATG
*
95746699 CACATGATTTG
1 -ACATGATATG
** *
95746710 TTATGAGATG
1 ACATGATATG
95746720 CACATGATATG
1 -ACATGATATG
95746731 -CTATGATAT
1 AC-ATGATAT
95746740 AGTCATTATA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
9 1 0.03
10 23 0.57
11 16 0.40
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (10 bp):
ACATGATATG
Found at i:95746704 original size:21 final size:20
Alignment explanation
Indices: 95746679--95746739 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
95746669 ATATTGTTAT
95746679 ACATGATATGACATGATATGC
1 ACATGATATG-CATGATATGC
* * *
95746700 ACATGATTTGTTATGAGATGC
1 ACATGATATG-CATGATATGC
95746721 ACATGATATGCTATGATAT
1 ACATGATATGC-ATGATAT
95746740 AGTCATTATA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:95746705 original size:11 final size:11
Alignment explanation
Indices: 95746679--95746731 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
95746669 ATATTGTTAT
95746679 ACATGATATG-
1 ACATGATATGC
95746689 ACATGATATGC
1 ACATGATATGC
*
95746700 ACATGATTTG-
1 ACATGATATGC
** *
95746710 TTATGAGATGC
1 ACATGATATGC
95746721 ACATGATATGC
1 ACATGATATGC
95746732 TATGATATAG
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.48
11 17 0.52
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:95746843 original size:24 final size:24
Alignment explanation
Indices: 95746787--95746857 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
95746777 AGGAAGTGCG
*
95746787 AAAG-GGCTTTGCCCCAGTTCACCA
1 AAAGAGGCTTTGCCCCAGTT-ATCA
*
95746811 AAA-AGGGCTTTGCCCCAGTTATTA
1 AAAGA-GGCTTTGCCCCAGTTATCA
**
95746835 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAGAGGCTTTGCC-CCAGTTAT
95746858 ATGATAAAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 15 0.38
25 24 0.62
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAGAGGCTTTGCCCCAGTTATCA
Found at i:95753036 original size:18 final size:19
Alignment explanation
Indices: 95753009--95753050 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
95752999 TAACACCCAG
* *
95753009 ATTTTCGAGATTTTCGT-A
1 ATTTTAGAGACTTTCGTAA
*
95753027 ATTTTAGAGACTTTGGTAA
1 ATTTTAGAGACTTTCGTAA
95753046 ATTTT
1 ATTTT
95753051 TTAAAATTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (19 bp):
ATTTTAGAGACTTTCGTAA
Found at i:95754913 original size:25 final size:25
Alignment explanation
Indices: 95754845--95754915 Score: 108
Period size: 24 Copynumber: 2.9 Consensus size: 25
95754835 TTATAATATG
*
95754845 AAAAATGACCATTTTGCACCTAGGT
1 AAAAATGACCATTTTGCCCCTAGGT
95754870 -AAAATGACCATTTTGCCCCTAGGT
1 AAAAATGACCATTTTGCCCCTAGGT
* *
95754894 AAAAATGACCATTATACCCCTA
1 AAAAATGACCATTTTGCCCCTA
95754916 TGGTTTAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
24 23 0.55
25 19 0.45
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTTTGCCCCTAGGT
Found at i:95754970 original size:10 final size:10
Alignment explanation
Indices: 95754951--95755014 Score: 60
Period size: 10 Copynumber: 6.3 Consensus size: 10
95754941 GAGATATTGT
95754951 TATG-CATGA
1 TATGACATGA
95754960 TATGACATGA
1 TATGACATGA
95754970 TATGCACATGA
1 TATG-ACATGA
**
95754981 TATGTTATGA
1 TATGACATGA
*
95754991 GATGCACATGA
1 TATG-ACATGA
95755002 TATG-CTATGA
1 TATGAC-ATGA
95755012 TAT
1 TAT
95755015 ACTCATTATA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
9 5 0.11
10 23 0.51
11 17 0.38
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (10 bp):
TATGACATGA
Found at i:95754981 original size:21 final size:20
Alignment explanation
Indices: 95754955--95755030 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 20
95754945 TATTGTTATG
95754955 CATGATATGACATGATATGCA
1 CATGATATG-CATGATATGCA
* *
95754976 CATGATATGTTATGAGATGCA
1 CATGATATG-CATGATATGCA
* *
95754997 CATGATATGCTATGATATACT
1 CATGATATGC-ATGATATGCA
*
95755018 CATTATATGCATG
1 CATGATATGCATG
95755031 GGTTGGGTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
20 3 0.07
21 43 0.93
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
CATGATATGCATGATATGCA
Found at i:95755208 original size:38 final size:38
Alignment explanation
Indices: 95755157--95755248 Score: 175
Period size: 38 Copynumber: 2.4 Consensus size: 38
95755147 ATGCTGCCAG
*
95755157 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCGACA
1 TGGAGAGCTTGGTTGGGTGGGTTGAGTTATTCCCGACA
95755195 TGGAGAGCTTGGTTGGGTGGGTTGAGTTATTCCCGACA
1 TGGAGAGCTTGGTTGGGTGGGTTGAGTTATTCCCGACA
95755233 TGGAGAGCTTGGTTGG
1 TGGAGAGCTTGGTTGG
95755249 TACAGGTAGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.15, C:0.11, G:0.41, T:0.33
Consensus pattern (38 bp):
TGGAGAGCTTGGTTGGGTGGGTTGAGTTATTCCCGACA
Found at i:95757144 original size:17 final size:17
Alignment explanation
Indices: 95757115--95757171 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
95757105 GAAAACGAGT
95757115 AAAATGACATAATCGGTA
1 AAAAT-ACATAATCGGTA
* *
95757133 AAAATACCTAAT-GTTTA
1 AAAATACATAATCG-GTA
* *
95757150 TAACTACATAATCGGTA
1 AAAATACATAATCGGTA
95757167 AAAAT
1 AAAAT
95757172 GATTAGCATG
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
16 1 0.03
17 22 0.76
18 6 0.21
ACGTcount: A:0.49, C:0.12, G:0.11, T:0.28
Consensus pattern (17 bp):
AAAATACATAATCGGTA
Found at i:95757284 original size:30 final size:30
Alignment explanation
Indices: 95757227--95757284 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
95757217 TTGGAGCTTT
*
95757227 GGGGCAAAAGTGTAAATATGCACAAGTTTA
1 GGGGCAAAAGTGTAAATATGCAAAAGTTTA
* * *
95757257 GGGGCAAAATTGTAATTTTGCAAAAGTT
1 GGGGCAAAAGTGTAAATATGCAAAAGTT
95757285 AGAGTTAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.28
Consensus pattern (30 bp):
GGGGCAAAAGTGTAAATATGCAAAAGTTTA
Found at i:95762265 original size:19 final size:20
Alignment explanation
Indices: 95762241--95762280 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
95762231 ATGTGTTTAT
95762241 TTTGATG-TTTTTAGTAGAA
1 TTTGATGTTTTTTAGTAGAA
95762260 TTTGATGTTTTTTAGTAGAA
1 TTTGATGTTTTTTAGTAGAA
95762280 T
1 T
95762281 ATGAAGCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTGATGTTTTTTAGTAGAA
Found at i:95782326 original size:43 final size:42
Alignment explanation
Indices: 95782276--95782379 Score: 106
Period size: 41 Copynumber: 2.5 Consensus size: 42
95782266 CAATGCCGAC
* * *
95782276 GTCCCATACGTGGTCTTACATGC-AATCACATATCGATTCCACT
1 GTCCCATACGTGGTCTTACA-GCAAATCAAATA-CGATGCCAAT
*
95782319 GTCCCATACAG-GGTCTTAC-GCAAATCAAATACGATGCTAAT
1 GTCCCATAC-GTGGTCTTACAGCAAATCAAATACGATGCCAAT
* *
95782360 GTCCCAGACATGGTCTTACA
1 GTCCCATACGTGGTCTTACA
95782380 CGAGAACACA
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
41 25 0.49
42 8 0.16
43 17 0.33
44 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (42 bp):
GTCCCATACGTGGTCTTACAGCAAATCAAATACGATGCCAAT
Found at i:95782713 original size:15 final size:16
Alignment explanation
Indices: 95782689--95782732 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
95782679 GTTCTTGATC
*
95782689 TAAACATATTCAAA-T
1 TAAACTTATTCAAACT
95782704 TAAACTTATTCAAACT
1 TAAACTTATTCAAACT
95782720 T-AACTTCATTCAA
1 TAAACTT-ATTCAA
95782733 TTTAGTCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 18 0.69
16 8 0.31
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAACTTATTCAAACT
Found at i:95787381 original size:56 final size:56
Alignment explanation
Indices: 95787295--95787414 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
95787285 AAAAGGGATG
95787295 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
95787351 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
95787407 ATGGGCAA
1 ATGGGCAA
95787415 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:95788752 original size:80 final size:79
Alignment explanation
Indices: 95788539--95788796 Score: 267
Period size: 79 Copynumber: 3.3 Consensus size: 79
95788529 TCGAATGATG
* * * * * *
95788539 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAATCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
95788602 TTGTGCGAGATACTAAT
64 TTGTGCGAG-TACTAAA
* *
95788619 TCCGGGCT-AAGCCCGAAGGCA-TTGATGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAATCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCAT
95788681 TTGTGCGAGTTACTAAA
64 TTGTGCGAG-TACTAAA
* *
95788698 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
** *
95788763 GAACGAGTAGCTATA
66 GTGCGAGTA-CTAAA
* *
95788778 TCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAATCCCGAAGG
95788797 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
78 2 0.01
79 76 0.50
80 69 0.45
81 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTACTAAA
Found at i:95788770 original size:40 final size:40
Alignment explanation
Indices: 95788539--95788763 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
95788529 TCGAATGATG
* * * *
95788539 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
95788579 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
95788619 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
*
95788658 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
95788698 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
95788739 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
95788764 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 116 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:95794656 original size:29 final size:28
Alignment explanation
Indices: 95794620--95794697 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
95794610 TCATGAGATT
95794620 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
95794650 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
95794677 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
95794698 GATTATTGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:95794915 original size:174 final size:174
Alignment explanation
Indices: 95794650--95794977 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
95794640 AAATTGTACA
*
95794650 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
95794715 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
*
95794780 TTTTGGATAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
95794824 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
95794889 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
95794954 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
95794978 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:95797907 original size:56 final size:56
Alignment explanation
Indices: 95797821--95797996 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
95797811 ACAAGGGATG
*
95797821 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
95797877 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
95797933 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
95797989 ATGGGCAA
1 ATGGGCAA
95797997 TAAACTAATA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:95799210 original size:40 final size:39
Alignment explanation
Indices: 95799126--95799310 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
95799116 TCGAATGATG
* * * *
95799126 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
95799166 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
95799206 TCCGGGCTAAGCCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTG-TGCGAGTTACTAAA
*
95799245 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
95799286 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
95799311 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:95799262 original size:79 final size:80
Alignment explanation
Indices: 95799126--95799308 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
95799116 TCGAATGATG
* *
95799126 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
95799191 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
95799205 TTCCGGGCTAAG-CCCGAAGGCATTGATGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTG-TGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
95799267 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGATACTATA
* *
95799285 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
95799309 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 61 0.69
80 27 0.30
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:95799332 original size:79 final size:79
Alignment explanation
Indices: 95799179--95799343 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
95799169 GGACTAAGAT
* *
95799179 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGATACGAGTTACTAA
*
95799244 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
95799258 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGA-ACGAG-TAG
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCA-TTGATACGAGTTA-
* *
95799320 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
95799337 CCGAAGG
1 CCGAAGG
95799344 TACGTGATTT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 21 0.28
81 4 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGATACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:95804230 original size:68 final size:66
Alignment explanation
Indices: 95804083--95804268 Score: 202
Period size: 68 Copynumber: 2.8 Consensus size: 66
95804073 ATATAGTTCG
* * *
95804083 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGC--CA-ATTTATCCCGT
1 GCTCTCTTGTACACATGGTGTACACTCAGTACCACACATGTGACCTAGCTACATATATATCCCGT
95804145 A
66 A
* *
95804146 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACACATGTGACCTAGCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGTACAC-TCAGTACCACACATGTGACCTAGCTACAT-AT-ATATC
**
95804209 TTGTA
62 CCGTA
* * * *
95804214 GCTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGTACACATGGTGTACACTCAGTACCACACATGTGACCTAGCTACATA
95804269 CTATTTGTAT
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
62 1 0.01
63 42 0.41
64 1 0.01
65 2 0.02
67 4 0.04
68 51 0.50
69 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (66 bp):
GCTCTCTTGTACACATGGTGTACACTCAGTACCACACATGTGACCTAGCTACATATATATCCCGT
A
Found at i:95810646 original size:19 final size:19
Alignment explanation
Indices: 95810622--95810665 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
95810612 TGTAAACTAG
95810622 TTGAGAAAAATCAGCTCAA
1 TTGAGAAAAATCAGCTCAA
95810641 TTGAGAAAAATCAGCTCAA
1 TTGAGAAAAATCAGCTCAA
*
95810660 ATGAGA
1 TTGAGA
95810666 GGCTAATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (19 bp):
TTGAGAAAAATCAGCTCAA
Found at i:95818347 original size:19 final size:19
Alignment explanation
Indices: 95818323--95818366 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
95818313 TGTAAACTAG
95818323 TTGAGAAAAATCAGCTCAA
1 TTGAGAAAAATCAGCTCAA
95818342 TTGAGAAAAATCAGCTCAA
1 TTGAGAAAAATCAGCTCAA
95818361 TTGAGA
1 TTGAGA
95818367 GGCTAATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (19 bp):
TTGAGAAAAATCAGCTCAA
Found at i:95820201 original size:25 final size:25
Alignment explanation
Indices: 95820173--95820242 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
95820163 TTCTTTTAAT
95820173 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
95820198 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
95820223 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
95820243 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:95821173 original size:27 final size:27
Alignment explanation
Indices: 95821143--95821276 Score: 103
Period size: 27 Copynumber: 4.9 Consensus size: 27
95821133 GTAAATCTAC
*
95821143 AAACCAAGGGTATTTCAGCAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
95821170 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
95821196 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** *
95821226 AAATCAGGGGTATTTTGGTAATTTTAT
1 AAACCAAGGGTATTTCAGTAATTTTGT
**
95821253 AAATTGAA-GGTATTTCAGTAATTT
1 AAA-CCAAGGGTATTTCAGTAATTT
95821277 CACAAACCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 14
0.76 0.11 0.12
Matches are distributed among these distances:
26 1 0.01
27 58 0.67
28 9 0.10
29 18 0.21
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:95821248 original size:56 final size:55
Alignment explanation
Indices: 95821147--95821276 Score: 147
Period size: 56 Copynumber: 2.4 Consensus size: 55
95821137 ATCTACAAAC
* *
95821147 CAAGGGTATTTCAGCAATTTTGTAAACCAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTTTAGAAAGT
* * * * * *
95821203 CAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTT-TGGTAATTTTATAAATT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTTTAGAAAGT
*
95821258 GAA-GGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
95821277 CACAAACCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
54 15 0.24
55 12 0.19
56 36 0.57
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (55 bp):
CAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTTTAGAAAGT
Found at i:95821330 original size:27 final size:27
Alignment explanation
Indices: 95821233--95821333 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
95821223 TGTAAATCAG
* *
95821233 GGGTATTTTGGTAATTTTATAAATTGAA
1 GGGTATTTTGGTAATTTTAAAAACT-AA
** * * *
95821261 -GGTATTTCAGTAATTTCACAAACCAACCA
1 GGGTATTTTGGTAATTTTA-AAAACTA--A
95821290 GTGGTATTTTGGTAATTTTAAAAACTAA
1 G-GGTATTTTGGTAATTTTAAAAACTAA
95821318 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
95821334 CTACCCTATA
Statistics
Matches: 56, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
27 31 0.55
28 4 0.07
29 1 0.02
30 5 0.09
31 15 0.27
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTAAAAACTAA
Found at i:95821399 original size:27 final size:27
Alignment explanation
Indices: 95821365--95821456 Score: 100
Period size: 27 Copynumber: 3.4 Consensus size: 27
95821355 GTAATTTCAC
*
95821365 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
95821392 AATTGAGGGTGAAATA-G-TAATTCTGTA
1 AATCGAGGGT-AAA-ACGATAATTCTGTA
* *
95821419 AATCAAGGGTAAAAC-AGTAATTCTATA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
95821446 AATCGAGGGTA
1 AATCGAGGGTA
95821457 CTTTGGTAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
25 1 0.02
26 3 0.06
27 45 0.83
28 4 0.07
29 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:95823939 original size:7 final size:6
Alignment explanation
Indices: 95823920--95823962 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
95823910 TTTAGAAACA
* * *
95823920 TTTATT TTTATT TTTAAT TTTATGT TTTATG TTAATT TTTATT
1 TTTATT TTTATT TTTATT TTTAT-T TTTATT TTTATT TTTATT
95823963 AAAAGTACTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:95842569 original size:52 final size:52
Alignment explanation
Indices: 95842512--95842623 Score: 170
Period size: 52 Copynumber: 2.2 Consensus size: 52
95842502 ACCTGTTAGA
* * *
95842512 TAGACACGTGCGTGGGGCTTGCATACACAGGCGTGGGAGAAACGAACAACGC
1 TAGACACGGGCGTGGGGATTGCATACACAGGCGTGGGAGAAACGAACAACAC
* *
95842564 TAGACACGGGTGTGGGGATTGCATACACGGGCGTGGGAGAAACGAACAACAC
1 TAGACACGGGCGTGGGGATTGCATACACAGGCGTGGGAGAAACGAACAACAC
*
95842616 CAGACACG
1 TAGACACG
95842624 ACCATGTGAC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.30, C:0.22, G:0.35, T:0.12
Consensus pattern (52 bp):
TAGACACGGGCGTGGGGATTGCATACACAGGCGTGGGAGAAACGAACAACAC
Found at i:95851504 original size:15 final size:15
Alignment explanation
Indices: 95851484--95851512 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
95851474 TGAAAAACAA
95851484 AATAAAAATAAAAAT
1 AATAAAAATAAAAAT
95851499 AATAAAAATAAAAA
1 AATAAAAATAAAAA
95851513 ATTAACTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
AATAAAAATAAAAAT
Found at i:95852200 original size:15 final size:17
Alignment explanation
Indices: 95852180--95852211 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
95852170 ATTCAATGTA
95852180 AATAAT-ATTTA-AAAT
1 AATAATCATTTATAAAT
95852195 AATAATCATTTATAAAT
1 AATAATCATTTATAAAT
95852212 TAAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AATAATCATTTATAAAT
Found at i:95852423 original size:20 final size:21
Alignment explanation
Indices: 95852398--95852437 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
95852388 AATTTAAATT
*
95852398 TTAAAAGTATAAAA-TTAAAA
1 TTAAAAGTAGAAAACTTAAAA
*
95852418 TTAAAATTAGAAAACTTAAA
1 TTAAAAGTAGAAAACTTAAA
95852438 CATATAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (21 bp):
TTAAAAGTAGAAAACTTAAAA
Found at i:95852499 original size:16 final size:14
Alignment explanation
Indices: 95852478--95852513 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 14
95852468 ACAACATTCT
95852478 AAATTAAAATGATATA
1 AAATTAAAAT--TATA
95852494 AAATTAAAATTATA
1 AAATTAAAATTATA
95852508 AAATTA
1 AAATTA
95852514 TAAACATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 10 0.50
16 10 0.50
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AAATTAAAATTATA
Found at i:95852509 original size:14 final size:15
Alignment explanation
Indices: 95852478--95852525 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
95852468 ACAACATTCT
95852478 AAATTAAAATGATATA
1 AAATTAAAAT-ATATA
95852494 AAATTAAAAT-TATA
1 AAATTAAAATATATA
*
95852508 AAATTATAAACATATA
1 AAATTA-AAATATATA
95852524 AA
1 AA
95852526 CAATAAAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 10 0.34
15 3 0.10
16 16 0.55
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
AAATTAAAATATATA
Found at i:95853279 original size:22 final size:22
Alignment explanation
Indices: 95853253--95853302 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
95853243 AAAAGCTTGC
*
95853253 ATGTCTTGAGACAAAAA-CCTAT
1 ATGTCTTGA-AAAAAAAGCCTAT
*
95853275 TTGTCTTGAAAAAAAAGCCTAT
1 ATGTCTTGAAAAAAAAGCCTAT
95853297 ATGTCT
1 ATGTCT
95853303 CAAGACATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (22 bp):
ATGTCTTGAAAAAAAAGCCTAT
Found at i:95863888 original size:47 final size:47
Alignment explanation
Indices: 95863811--95863940 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
95863801 GTGCGAATAA
* * * * * *
95863811 TACCTTAACTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
* *
95863858 T-CTCTTGATTTGGCTACGGGCTATGGTATAGGTACTCTGAGATAAGT
1 TAC-CTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
*
95863905 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
95863941 TATCGATTGT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 69 0.97
48 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
Found at i:95867066 original size:46 final size:46
Alignment explanation
Indices: 95866996--95867202 Score: 170
Period size: 46 Copynumber: 4.4 Consensus size: 46
95866986 AGTCAATACG
*
95866996 ATGTCCCAGACACGGTCTTACATTGACTATCATCTCGTA-GCCGATGC
1 ATGTCCCAGACA-GGTCTTACATTGACTATCATCTCG-AGGCCAATGC
* * * *
95867043 ATGTCCTAGACATGTCTTACATTGGCT-TACGTCTCGAGGCCAATGC
1 ATGTCCCAGACAGGTCTTACATTGACTAT-CATCTCGAGGCCAATGC
* * * * * * *
95867089 ATGTCCCAAACAGGTCTTACACTAACTCTCTTCTCAATGCCAATGCC
1 ATGTCCCAGACAGGTCTTACATTGACTATCATCTCGAGGCCAATG-C
* * *
95867136 ATGTCCCAGACATGGTCTTACACTTG-CTATCATAAT-GTGGCCAATCC
1 ATGTCCCAGACA-GGTCTTACA-TTGACTATCAT-CTCGAGGCCAATGC
* *
95867183 ATGTCCCAGGCATGTCTTAC
1 ATGTCCCAGACAGGTCTTAC
95867203 GCTAGCCCAC
Statistics
Matches: 127, Mismatches: 26, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.02
46 67 0.53
47 36 0.28
48 20 0.16
49 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
ATGTCCCAGACAGGTCTTACATTGACTATCATCTCGAGGCCAATGC
Found at i:95872083 original size:47 final size:47
Alignment explanation
Indices: 95872005--95872507 Score: 853
Period size: 47 Copynumber: 10.6 Consensus size: 47
95871995 CCCTTCGGGA
* * * * * *
95872005 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
95872052 CCTGTCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95872099 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95872146 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95872195 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95872244 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95872291 CTTATCACATATATACACTTTCAGATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95872338 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95872385 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95872432 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95872479 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
95872508 TATTCAAATA
Statistics
Matches: 436, Mismatches: 16, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
47 321 0.74
49 115 0.26
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95877253 original size:40 final size:40
Alignment explanation
Indices: 95877170--95877432 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
95877160 TTGAATGCTG
* * * * * *
95877170 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
95877210 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
95877250 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
95877290 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
95877330 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
95877370 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
95877409 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
95877433 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:95877452 original size:79 final size:80
Alignment explanation
Indices: 95877209--95877467 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
95877199 AAGTGAATAT
* * * * * *
95877209 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
95877273 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
95877289 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
95877354 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
95877369 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
95877433 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
95877448 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
95877468 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:95884765 original size:40 final size:40
Alignment explanation
Indices: 95884682--95884944 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
95884672 TTGAATGCTG
* * * * * *
95884682 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
95884722 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
95884762 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
95884802 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
95884842 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
95884882 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
95884921 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
95884945 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:95884964 original size:79 final size:80
Alignment explanation
Indices: 95884721--95884979 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
95884711 AAGTGAATAT
* * * * * *
95884721 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
95884785 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
95884801 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
95884866 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
95884881 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
95884945 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
95884960 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
95884980 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:95887529 original size:40 final size:40
Alignment explanation
Indices: 95887457--95887719 Score: 273
Period size: 40 Copynumber: 6.6 Consensus size: 40
95887447 CCAGCATGAT
* * *
95887457 TGCTCTTCGGGACCTAGCCCGGACATAACACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
95887497 TGCTCTTCGGGGTTTAGCACGGAGATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** * *
95887537 TGCTCTTTGAAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
95887577 TGCTCTTCGGGACTTAGCCCGGATATATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
95887617 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
95887658 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
95887698 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
95887720 CATCATTCGA
Statistics
Matches: 185, Mismatches: 33, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 163 0.88
41 19 0.10
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:95887673 original size:120 final size:121
Alignment explanation
Indices: 95887444--95887722 Score: 305
Period size: 120 Copynumber: 2.3 Consensus size: 121
95887434 AGAATACACG
* * * *
95887444 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGA
* * * *
95887509 TTTAGCACGGAGATATCACTAGCACGAATGCTCTTTGAAACTTAGCCCGGATA-CA
66 CTTAGCACGGAGATATAACTAGCACCAATGCTCTTCGAAACTTAGCCCGGATATCA
* * * *
95887564 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCGCTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGA
* ** * * * * **
95887629 CTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGG
66 CTTAGCACGGAGATA-TAACTAGCACCAATGCTCTTCGAAACTTAGCCCGGATATCA
* *
95887685 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGACAT
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGACAT
95887723 CATTCGAATA
Statistics
Matches: 132, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
120 106 0.80
121 21 0.16
122 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (121 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGA
CTTAGCACGGAGATATAACTAGCACCAATGCTCTTCGAAACTTAGCCCGGATATCA
Found at i:95888074 original size:29 final size:29
Alignment explanation
Indices: 95888027--95888105 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
95888017 CTTAATAATC
*
95888027 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
95888057 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
95888086 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
95888106 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:95888148 original size:43 final size:43
Alignment explanation
Indices: 95888087--95888189 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
95888077 TGCATTTCAA
95888087 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
95888130 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
95888173 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
95888190 TGAAAACGAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:95889604 original size:47 final size:47
Alignment explanation
Indices: 95889526--95890030 Score: 839
Period size: 47 Copynumber: 10.6 Consensus size: 47
95889516 CCCTTCGGGA
* * * * * *
95889526 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
95889573 CCTGTCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95889620 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95889667 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95889716 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95889765 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95889812 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95889859 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95889906 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95889955 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95890002 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
95890031 TATTCAAATA
Statistics
Matches: 436, Mismatches: 16, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
47 276 0.63
49 160 0.37
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95889719 original size:96 final size:95
Alignment explanation
Indices: 95889526--95890030 Score: 845
Period size: 96 Copynumber: 5.3 Consensus size: 95
95889516 CCCTTCGGGA
* * * * * * * * *
95889526 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACG
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
95889590 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
95889620 CTTATCAC-ATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
95889684 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
95889716 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
95889781 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
95889812 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
95889876 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
*
95889906 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
95889971 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
95890002 CTTATCACATATATATACACTTTCACATT
1 CTTATCACA-ATATATACACTTTCACATT
95890031 TATTCAAATA
Statistics
Matches: 393, Mismatches: 12, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
94 140 0.36
96 207 0.53
98 46 0.12
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95889951 original size:239 final size:237
Alignment explanation
Indices: 95889526--95890030 Score: 875
Period size: 239 Copynumber: 2.1 Consensus size: 237
95889516 CCCTTCGGGA
* * * * * * *
95889526 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
95889591 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
95889656 AGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 AGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
95889721 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95889765 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
95889830 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
95889895 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
131 AGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
95889960 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95890002 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
95890031 TATTCAAATA
Statistics
Matches: 253, Mismatches: 11, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
237 47 0.19
239 206 0.81
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
AGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95903834 original size:2 final size:2
Alignment explanation
Indices: 95903827--95903857 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
95903817 CACATCTTTT
*
95903827 TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
95903858 TATCTGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (2 bp):
TC
Found at i:95906626 original size:46 final size:46
Alignment explanation
Indices: 95906490--95906657 Score: 146
Period size: 47 Copynumber: 3.6 Consensus size: 46
95906480 TAGGTAAGGT
** * * *
95906490 GCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCAT-ATTTC-AA
1 GCCGATG-CATGTTCCAGACAT-GTCTTACACTGACT-ATCATCTCGAG
* * * *
95906537 GTCGATGCCATGTCCCAGACACGGTCTTACATTGACTATCATCTCGTA-
1 GCCGATG-CATGTTCCAGACA-TGTCTTACACTGACTATCATCTCG-AG
*
95906585 GCCGATGCATGTTCCAGACATGTTTTACACTGACT-TACATCTCGAG
1 GCCGATGCATGTTCCAGACATGTCTTACACTGACTAT-CATCTCGAG
*
95906631 GTCGATGCATGTTCCAGACATGTCTTA
1 GCCGATGCATGTTCCAGACATGTCTTA
95906658 AACTAGCTCT
Statistics
Matches: 102, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.02
46 46 0.45
47 47 0.46
48 6 0.06
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTTCCAGACATGTCTTACACTGACTATCATCTCGAG
Found at i:95906788 original size:50 final size:48
Alignment explanation
Indices: 95906730--95906905 Score: 173
Period size: 50 Copynumber: 3.6 Consensus size: 48
95906720 TGAGATGTGT
*
95906730 CAGTGTAAGACCATGTCTGGCACATGACATCGGCACGTAGATGTGAGAGC
1 CAGTGTAAGACCATGTCTGG-ACATGGCATCGGCAC-TAGATGTGAGAGC
* * *
95906780 CAGTGTAAGACCATGTCTGGTACATGGCGTCGGCA-TCA-ATTTCGATAGC
1 CAGTGTAAGACCATGTCTGG-ACATGGCATCGGCACT-AGATGT-GAGAGC
** *
95906829 CAGTGTAAGACTTTGTCTGAGACATGGCATC-G-ACTTGATG-GATGAGC
1 CAGTGTAAGACCATGTCTG-GACATGGCATCGGCACTAGATGTGA-GAGC
*
95906876 CAGTGTAAGACCATGTTTGGGACATGGCAT
1 CAGTGTAAGACCATGTCT-GGACATGGCAT
95906906 TAGCATTTCT
Statistics
Matches: 105, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
46 2 0.02
47 29 0.28
48 9 0.09
49 32 0.30
50 33 0.31
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGACATGGCATCGGCACTAGATGTGAGAGC
Found at i:95915126 original size:30 final size:30
Alignment explanation
Indices: 95915090--95915150 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
95915080 TCCTTAACTC
*
95915090 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
95915120 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
95915150 A
1 A
95915151 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:95919099 original size:9 final size:11
Alignment explanation
Indices: 95919072--95919109 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
95919062 ACACGATTGG
95919072 ACATGATATGC
1 ACATGATATGC
95919083 ACATGATATG-
1 ACATGATATGC
95919093 A-ATGATATGC
1 ACATGATATGC
95919103 ACATGAT
1 ACATGAT
95919110 GTATTCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 8 0.32
10 2 0.08
11 15 0.60
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (11 bp):
ACATGATATGC
Found at i:95919202 original size:25 final size:25
Alignment explanation
Indices: 95919157--95919227 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
95919147 GAGGAAGTGC
*
95919157 AAAAGGGCTTTTGCCCCAGTTTA-CTG
1 AAAAGGGC-TTTGCCCCAGTTTATC-A
*
95919183 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
95919208 AAAAGGGCTTCGCCACAGTT
1 AAAAGGGCTTTGCCCCAGTT
95919228 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
25 30 0.77
26 9 0.23
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:95919482 original size:30 final size:31
Alignment explanation
Indices: 95919448--95919530 Score: 116
Period size: 30 Copynumber: 2.7 Consensus size: 31
95919438 CGGTTACAGT
95919448 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
95919478 AAAGGCTTCGGCCCGGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
95919509 AATGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
95919531 TTGAGGTTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 25 0.54
31 21 0.46
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:95921462 original size:40 final size:40
Alignment explanation
Indices: 95921386--95921565 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
95921376 AAGTATCTTT
* *
95921386 GGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC
* ** *
95921425 GGGTCTTAGCCCGGATATAGTCACTAGCATGATTGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
95921465 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
95921505 GGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGCCTTC
95921548 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
95921566 CATCCGAATA
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
39 8 0.07
40 83 0.67
41 1 0.01
43 31 0.25
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:95924582 original size:37 final size:37
Alignment explanation
Indices: 95924532--95924610 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
95924522 TTATTACGAA
* * *
95924532 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
95924569 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
95924606 GTCTT
1 GTCTT
95924611 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:95924807 original size:47 final size:47
Alignment explanation
Indices: 95924731--95924913 Score: 276
Period size: 47 Copynumber: 3.9 Consensus size: 47
95924721 CTTCGGGACA
* * * * * * * *
95924731 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
95924778 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
95924825 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
95924872 TATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTA
95924914 CGCCATACTA
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:95931158 original size:43 final size:43
Alignment explanation
Indices: 95931097--95931179 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
95931087 CGGATAAAAG
95931097 AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACATGT
1 AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACATGT
95931140 AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACA
1 AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACA
95931180 AGTATGTACG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.27
Consensus pattern (43 bp):
AATGACTAGTTAGAGAAAGAGATTAGTACTAGATGGTACATGT
Found at i:95948463 original size:37 final size:37
Alignment explanation
Indices: 95948402--95948480 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
95948392 TTATTACGAA
* * *
95948402 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
95948439 GTCTTACCCAGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
95948476 GTCTT
1 GTCTT
95948481 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:95948677 original size:47 final size:47
Alignment explanation
Indices: 95948599--95949244 Score: 1141
Period size: 47 Copynumber: 13.7 Consensus size: 47
95948589 CCCTTCGGGA
* * * * * *
95948599 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95948646 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95948693 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95948740 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95948787 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95948834 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95948881 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95948928 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95948975 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95949022 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95949069 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95949116 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95949163 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
95949210 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
95949245 AGAATCCTAA
Statistics
Matches: 577, Mismatches: 21, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 1 0.00
47 576 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95955167 original size:24 final size:24
Alignment explanation
Indices: 95955135--95955180 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
95955125 AACACACACC
95955135 ATATGTACTTTACAGTCATATGCT
1 ATATGTACTTTACAGTCATATGCT
95955159 ATATGTACTTTACAGTCATATG
1 ATATGTACTTTACAGTCATATG
95955181 GGTCAATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.41
Consensus pattern (24 bp):
ATATGTACTTTACAGTCATATGCT
Done.