Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 295 of 356
Found at i:95955403 original size:25 final size:25
Alignment explanation
Indices: 95955319--95955396 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
95955309 CTTTTAGTCA
* * *
95955319 AACAGTCAATCGGACATATCAATCG
1 AACAGTCAATCGGACATTTCAGTTG
* * *
95955344 AACACTTAATCGGACATTTTAGTTG
1 AACAGTCAATCGGACATTTCAGTTG
95955369 AACAGTCAATCAGGA-ATTTCAGTTG
1 AACAGTCAATC-GGACATTTCAGTTG
95955394 AAC
1 AAC
95955397 GATCAATATG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
25 40 0.93
26 3 0.07
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (25 bp):
AACAGTCAATCGGACATTTCAGTTG
Found at i:95959209 original size:25 final size:25
Alignment explanation
Indices: 95959181--95959234 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
95959171 CATGGTGCCT
*
95959181 TTCAGTCAAACAAT-CAATTGGACAA
1 TTCAGTCAAAC-ATGCAATTAGACAA
* *
95959206 TTCAGTCGAACATGCAATTAGACAT
1 TTCAGTCAAACATGCAATTAGACAA
95959231 TTCA
1 TTCA
95959235 ATAGAATGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (25 bp):
TTCAGTCAAACATGCAATTAGACAA
Found at i:95968443 original size:27 final size:26
Alignment explanation
Indices: 95968412--95968589 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 26
95968402 TAAATTGTAC
95968412 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
95968439 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* * *
95968465 ATGCACTAAGTGTGTGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
95968493 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
95968521 AGCACTAAGTGTGCGATTTGATTCTGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
95968548 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
95968575 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
95968590 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:95968580 original size:82 final size:81
Alignment explanation
Indices: 95968409--95968589 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
95968399 GATTAAATTG
* *
95968409 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
*
95968474 GTGTGTGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
95968490 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTCTG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
95968554 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
95968572 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
95968590 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:95985069 original size:27 final size:26
Alignment explanation
Indices: 95985038--95985215 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 26
95985028 TAAATTGTAC
95985038 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
95985065 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* * *
95985091 ATGCACTAAGCGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
95985119 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
95985147 AGCACTAAGTGTGCGATTTGATTCTGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
95985174 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
95985201 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
95985216 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:95985206 original size:82 final size:81
Alignment explanation
Indices: 95985035--95985215 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
95985025 GATTAAATTG
* *
95985035 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
95985100 GCGTGCGAATTGACCA
66 GCGTGCGAATTGACCA
* * ** * *
95985116 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTCTG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* * **
95985180 AAGTGTGCGAGTTGATTA
64 AAGCGTGCGAATTGACCA
* *
95985198 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
95985216 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GCGTGCGAATTGACCA
Found at i:95987626 original size:15 final size:15
Alignment explanation
Indices: 95987606--95987635 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
95987596 CTACTATAGG
95987606 TAGTAGACTGTACTA
1 TAGTAGACTGTACTA
95987621 TAGTAGACTGTACTA
1 TAGTAGACTGTACTA
95987636 AAATACTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TAGTAGACTGTACTA
Found at i:95994227 original size:37 final size:37
Alignment explanation
Indices: 95994169--95994256 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
95994159 ACATTTGAGT
* * *
95994169 ACATGTAAGTCTATAGCTGGGCTATGACATCGTAATG
1 ACATGTAAGACCATAGCTGGGCTATGACATCGTAATC
* * * *
95994206 ACATGTAAGACCATAGTTGGGCTATGGCATTGTGATC
1 ACATGTAAGACCATAGCTGGGCTATGACATCGTAATC
*
95994243 CCATGTAAGACCAT
1 ACATGTAAGACCAT
95994257 GTCTGGGACA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (37 bp):
ACATGTAAGACCATAGCTGGGCTATGACATCGTAATC
Found at i:95994270 original size:37 final size:38
Alignment explanation
Indices: 95994207--95994319 Score: 106
Period size: 47 Copynumber: 2.8 Consensus size: 38
95994197 ATCGTAATGA
95994207 CATGTAAGACCATAGT-TGGG-CTATGGCAT-TGTGATCC
1 CATGTAAGACCAT-GTCTGGGAC-ATGGCATATGTGATCC
95994244 CATGTAAGACCATGTCTGGGACATGGCATGGCATCAATATGTGATCC
1 CATGTAAGACCATGTCTGGG--A---CATGG---C-ATATGTGATCC
95994291 CATGTAAGACCATGTCTGGGACATGGCAT
1 CATGTAAGACCATGTCTGGGACATGGCAT
95994320 GGGATCAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 23
0.74 0.00 0.26
Matches are distributed among these distances:
36 2 0.03
37 17 0.27
38 2 0.03
39 1 0.02
42 9 0.14
43 1 0.02
45 2 0.03
46 2 0.03
47 28 0.44
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (38 bp):
CATGTAAGACCATGTCTGGGACATGGCATATGTGATCC
Found at i:95994290 original size:47 final size:47
Alignment explanation
Indices: 95994236--95994350 Score: 221
Period size: 47 Copynumber: 2.4 Consensus size: 47
95994226 GCTATGGCAT
95994236 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGCATCAATA
*
95994283 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGCATCAATA
95994330 TGTGATCCCATGTAAGACCAT
1 TGTGATCCCATGTAAGACCAT
95994351 AACTGGTATA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (47 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATGGCATCAATA
Found at i:95994814 original size:19 final size:19
Alignment explanation
Indices: 95994790--95994832 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
95994780 GTATAAAAAT
95994790 CATAAACCAACATTCAAAC
1 CATAAACCAACATTCAAAC
95994809 CATAAACCAACATTCAAAC
1 CATAAACCAACATTCAAAC
95994828 CATAA
1 CATAA
95994833 TACTAACCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.16
Consensus pattern (19 bp):
CATAAACCAACATTCAAAC
Found at i:95995533 original size:27 final size:27
Alignment explanation
Indices: 95995476--95995544 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
95995466 CAACCGATCT
* * *
95995476 CGCACACATAGTGCTCGGTTATAAATT
1 CGCACACATAGTGCTAGCTTATAAATA
* **
95995503 CGCACACATAGTGCTAGCTTTTTCATA
1 CGCACACATAGTGCTAGCTTATAAATA
*
95995530 CGCACACATTGTGCT
1 CGCACACATAGTGCT
95995545 GCCGCATTCG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (27 bp):
CGCACACATAGTGCTAGCTTATAAATA
Found at i:95995583 original size:25 final size:23
Alignment explanation
Indices: 95995530--95995589 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
95995520 CTTTTTCATA
* *
95995530 CGCACACATTGTGCTGCCGCATT
1 CGCACACATAGTGCTGCCCCATT
95995553 CGCACACATAGTGCTGCCCCATT
1 CGCACACATAGTGCTGCCCCATT
95995576 CGCACACATAGTGC
1 CGCACACATAGTGC
95995590 CCTTTTCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.22
Consensus pattern (23 bp):
CGCACACATAGTGCTGCCCCATT
Found at i:96001524 original size:27 final size:27
Alignment explanation
Indices: 96001494--96001670 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
96001484 AAATTGTACA
* *
96001494 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
96001521 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
96001548 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
96001575 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
96001603 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
96001630 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
96001657 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
96001671 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:96001607 original size:82 final size:81
Alignment explanation
Indices: 96001494--96001649 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
96001484 AAATTGTACA
* * * *
96001494 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
96001558 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
96001575 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
96001640 TGCGAGTTGA
65 TGCGAATTGA
96001650 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:96005321 original size:28 final size:28
Alignment explanation
Indices: 96005239--96005414 Score: 230
Period size: 28 Copynumber: 6.3 Consensus size: 28
96005229 GAGATTGGCG
* * * *
96005239 CTAAGTGTGCGGGTTTAAATTGTGCAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCA
* *
96005268 CTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
96005295 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
96005323 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
96005351 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
96005379 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
96005406 CTGAGTGTG
1 CTAAGTGTG
96005415 TGGACTTATT
Statistics
Matches: 134, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
27 42 0.31
28 81 0.60
29 11 0.08
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:96010810 original size:21 final size:21
Alignment explanation
Indices: 96010786--96010836 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
96010776 ATATTGTTAT
*
96010786 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
96010807 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
96010828 ACATGATAT
1 ACATGATAT
96010837 ACTCATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:96010812 original size:11 final size:11
Alignment explanation
Indices: 96010786--96010850 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
96010776 ATATTGTTAT
96010786 ACATGATATG-
1 ACATGATATGC
96010796 ACATGATATGC
1 ACATGATATGC
96010807 ACATGATATG-
1 ACATGATATGC
** *
96010817 TTATGAGATGC
1 ACATGATATGC
*
96010828 ACATGATATAC
1 ACATGATATGC
* *
96010839 TCATTATATGC
1 ACATGATATGC
96010850 A
1 A
96010851 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:96010848 original size:32 final size:31
Alignment explanation
Indices: 96010788--96010848 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
96010778 ATTGTTATAC
* *
96010788 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
96010819 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
96010849 CATGGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:96014666 original size:48 final size:48
Alignment explanation
Indices: 96014591--96014768 Score: 203
Period size: 48 Copynumber: 3.7 Consensus size: 48
96014581 GGCTGGCACA
* * * *
96014591 GATCCCATGTAAGACCATGTTTAGGACATGGCATTTGCATTAATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATGT
* * *
96014639 GATCCCATGTAAGACCATGCCTGGGACATGGCGTTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATGT
* * * * *
96014687 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCACCGACATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATGT
** * * *
96014735 GATTTCTTGTAAGATCATGTCTGAGACATGGCAT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCAT
96014769 CGATATGAGA
Statistics
Matches: 110, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATGT
Found at i:96026549 original size:25 final size:25
Alignment explanation
Indices: 96026520--96026567 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96026510 TTATAATATG
* * *
96026520 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
96026545 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
96026568 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:96026634 original size:20 final size:20
Alignment explanation
Indices: 96026611--96026649 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
96026601 TAAACATGGT
96026611 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
96026631 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
96026650 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:96026727 original size:24 final size:24
Alignment explanation
Indices: 96026700--96026819 Score: 190
Period size: 24 Copynumber: 5.1 Consensus size: 24
96026690 GAGGAAGTGC
*
96026700 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
96026724 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
96026748 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
96026771 -AAAGGGTTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
*
96026794 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
96026818 AA
1 AA
96026820 CGAGGCTAGG
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
23 44 0.49
24 45 0.51
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:96026755 original size:23 final size:23
Alignment explanation
Indices: 96026701--96026819 Score: 184
Period size: 23 Copynumber: 5.1 Consensus size: 23
96026691 AGGAAGTGCA
*
96026701 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
96026724 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
96026748 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
96026771 AAAGGGTTTATGCCCCAGTTGTT
1 AAAGGGCTTATGCCCCAGTTATT
*
96026794 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
96026818 AA
1 AA
96026820 CGAGGCTAGG
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
23 46 0.52
24 42 0.48
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:96026770 original size:47 final size:48
Alignment explanation
Indices: 96026700--96026819 Score: 190
Period size: 47 Copynumber: 2.5 Consensus size: 48
96026690 GAGGAAGTGC
*
96026700 AAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* *
96026748 -AAAGGGCTTATGCCCCAGTTATT-AAAGGGTTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
96026794 AAAAGGGCTTTTGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAA
96026820 CGAGGCTAGG
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
46 21 0.32
47 44 0.67
48 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:96027070 original size:31 final size:31
Alignment explanation
Indices: 96027032--96027126 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
96027022 CGTTTACAGT
*
96027032 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
96027063 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
96027094 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
96027125 AA
1 AA
96027127 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:96046351 original size:21 final size:21
Alignment explanation
Indices: 96046325--96046367 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
96046315 ATCCATCACA
96046325 TGTTATTTCT-TCGATAGATAT
1 TGTTATTTCTCT-GATAGATAT
96046346 TGTTATTTCTCTGATAGATAT
1 TGTTATTTCTCTGATAGATAT
96046367 T
1 T
96046368 AAGATTCAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.53
Consensus pattern (21 bp):
TGTTATTTCTCTGATAGATAT
Found at i:96061755 original size:8 final size:8
Alignment explanation
Indices: 96061738--96061767 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
96061728 CCAATTTATT
96061738 TCTTCTTC
1 TCTTCTTC
*
96061746 TCTTCCTC
1 TCTTCTTC
96061754 TCTTCTTC
1 TCTTCTTC
96061762 TCTTCT
1 TCTTCT
96061768 CCCCAAGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (8 bp):
TCTTCTTC
Found at i:96069818 original size:11 final size:11
Alignment explanation
Indices: 96069802--96069827 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
96069792 ACTTATCAAC
96069802 TATTATTATTT
1 TATTATTATTT
96069813 TATTATTATTT
1 TATTATTATTT
96069824 TATT
1 TATT
96069828 CTGATTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTATTATTT
Found at i:96071766 original size:63 final size:63
Alignment explanation
Indices: 96071662--96071788 Score: 148
Period size: 63 Copynumber: 2.0 Consensus size: 63
96071652 TGTGTGTTAA
* * * * *
96071662 GCTGCGTAACTCACTATTTTTGAATTAGAGACACACGGGCTACGGAAATGGGCATGTCTCCAG
1 GCTGCGTAACTCACTATTTTTAAATTAAAGACACACAGGCTAAGGAAATGAGCATGTCTCCAG
* ** * *
96071725 GCTGTGTAACTCACTA-TTTTAAATTAAAGGTTACACAGGCTAAGGACATGAGCATGTGTCCAG
1 GCTGCGTAACTCACTATTTTTAAATTAAA-GACACACAGGCTAAGGAAATGAGCATGTCTCCAG
96071788 G
1 G
96071789 TCCTTTGAGG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
62 10 0.19
63 43 0.81
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (63 bp):
GCTGCGTAACTCACTATTTTTAAATTAAAGACACACAGGCTAAGGAAATGAGCATGTCTCCAG
Found at i:96072455 original size:22 final size:22
Alignment explanation
Indices: 96072422--96072463 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
96072412 AGGAAATTGT
*
96072422 ATCTGATACTGATCTGTTCTAC
1 ATCTGATACTGATCTATTCTAC
96072444 ATCTG-TATCTGATCTATTCT
1 ATCTGATA-CTGATCTATTCT
96072464 GTGTCTTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (22 bp):
ATCTGATACTGATCTATTCTAC
Found at i:96074549 original size:14 final size:14
Alignment explanation
Indices: 96074530--96074557 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96074520 GAGTTAATTG
96074530 TACCATTGATAATA
1 TACCATTGATAATA
96074544 TACCATTGATAATA
1 TACCATTGATAATA
96074558 CTAGTGGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
TACCATTGATAATA
Found at i:96075128 original size:23 final size:23
Alignment explanation
Indices: 96075076--96075211 Score: 138
Period size: 23 Copynumber: 6.0 Consensus size: 23
96075066 TACCAATATA
*
96075076 TCAGCTCATAAGAGCTTACTGTTT
1 TCAGCTCATTAGAGCTTACTG-TT
* *
96075100 TCAGCTCATTGGAGCTTACCGTT
1 TCAGCTCATTAGAGCTTACTGTT
*
96075123 TCAGCTC-GTATGAGCTTACTG-T
1 TCAGCTCATTA-GAGCTTACTGTT
* *
96075145 TCAGCTTAATAGAGCTTACTG-T
1 TCAGCTCATTAGAGCTTACTGTT
96075167 TCAGCTCGA-TAGAGCTTA-TCGTT
1 TCAGCTC-ATTAGAGCTTACT-GTT
*
96075190 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTCATTAGAGCTTACTGT
96075212 CCATCAGCTC
Statistics
Matches: 96, Mismatches: 9, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.01
22 36 0.38
23 40 0.42
24 19 0.20
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (23 bp):
TCAGCTCATTAGAGCTTACTGTT
Found at i:96075163 original size:45 final size:45
Alignment explanation
Indices: 96075076--96075208 Score: 155
Period size: 45 Copynumber: 2.9 Consensus size: 45
96075066 TACCAATATA
* * * *
96075076 TCAGCTCATAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGTT
1 TCAGCTCGTATGAGCTTACTG-TTTCAGCTCAATAGAGCTTACCG-T
* *
96075123 TCAGCTCGTATGAGCTTACTG-TTCAGCTTAATAGAGCTTACTGT
1 TCAGCTCGTATGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGT
96075167 TCAGCTCG-ATAGAGCTTA-TCGTTTCAGCTCAATAGAGCTTAC
1 TCAGCTCGTAT-GAGCTTACT-GTTTCAGCTCAATAGAGCTTAC
96075209 TGTCCATCAG
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
43 3 0.04
44 17 0.22
45 37 0.49
47 19 0.25
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (45 bp):
TCAGCTCGTATGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGT
Found at i:96078520 original size:23 final size:23
Alignment explanation
Indices: 96078473--96078516 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
96078463 TTTTGCAATA
*
96078473 TAATTGTTAAATAAATATTGAAT
1 TAATTATTAAATAAATATTGAAT
*
96078496 TAATTATTAAAT-CATATTGAA
1 TAATTATTAAATAAATATTGAA
96078517 ATTATAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (23 bp):
TAATTATTAAATAAATATTGAAT
Found at i:96101969 original size:93 final size:93
Alignment explanation
Indices: 96101810--96101980 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
96101800 GCCCATAAGT
* * *
96101810 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCATTAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
96101875 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
**
96101903 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
96101968 CGAGTTCGGATGC
66 CGAGCTCGGATGC
96101981 TCAACCATCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:96101977 original size:46 final size:46
Alignment explanation
Indices: 96101802--96101977 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
96101792 TGTAACCCGC
* * *
96101802 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
* * *
96101848 CCATTAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACAT
* *
96101898 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
96101941 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
96101978 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 63 0.57
47 28 0.25
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:96106893 original size:33 final size:33
Alignment explanation
Indices: 96106838--96106900 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
96106828 ATATCTGCAT
* *
96106838 CTGATACTAATTCTGTATTGGGCTTAGGCCAGC
1 CTGATACTAATTCTATATTGGGCTCAGGCCAGC
*
96106871 CTGATACTATTTCTATGA-TGGGCTCAGGCC
1 CTGATACTAATTCTAT-ATTGGGCTCAGGCC
96106901 CAGTCTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.33
Consensus pattern (33 bp):
CTGATACTAATTCTATATTGGGCTCAGGCCAGC
Found at i:96112600 original size:16 final size:16
Alignment explanation
Indices: 96112579--96112611 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
96112569 CTGAATTCTC
96112579 TGCTCATCTCTTCTTT
1 TGCTCATCTCTTCTTT
*
96112595 TGCTCATCTTTTCTTT
1 TGCTCATCTCTTCTTT
96112611 T
1 T
96112612 TCTTTTAGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.27, G:0.06, T:0.61
Consensus pattern (16 bp):
TGCTCATCTCTTCTTT
Found at i:96113209 original size:17 final size:17
Alignment explanation
Indices: 96113167--96113209 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
96113157 GTGGAATGGG
*
96113167 TTTACAAAAACAAAGAT
1 TTTACAAAAACAAAAAT
*
96113184 TTT-CGAAAACAAAAAT
1 TTTACAAAAACAAAAAT
*
96113200 TTTATAAAAA
1 TTTACAAAAA
96113210 AACTCGATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.58, C:0.09, G:0.05, T:0.28
Consensus pattern (17 bp):
TTTACAAAAACAAAAAT
Found at i:96123887 original size:22 final size:22
Alignment explanation
Indices: 96123839--96123937 Score: 103
Period size: 22 Copynumber: 4.4 Consensus size: 22
96123829 TAGCTTATTG
* *
96123839 GAGCTTACTGTTTCAGTTC-GTA
1 GAGCTTACTG-TTCAGCTCAATA
*
96123861 TGAGCTTACTGTTCAACTCAATA
1 -GAGCTTACTGTTCAGCTCAATA
* *
96123884 GAGCGTACTGTTCAGCTCGATA
1 GAGCTTACTGTTCAGCTCAATA
96123906 GAGCTTACCAT-TTCAGCTCAATA
1 GAGCTTA-C-TGTTCAGCTCAATA
96123929 GAGCTTACT
1 GAGCTTACT
96123938 ACATCAGCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.02
22 32 0.49
23 31 0.48
24 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:96123926 original size:45 final size:45
Alignment explanation
Indices: 96123839--96123937 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 45
96123829 TAGCTTATTG
*
96123839 GAGCTTACTGTTTCAGTTCGTATGAGCTTACTGTTCAACTCAATA
1 GAGCTTACTGTTTCAGCTCGTATGAGCTTACTGTTCAACTCAATA
* *
96123884 GAGCGTACTG-TTCAGCTCG-ATAGAGCTTACCAT-TTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCGTAT-GAGCTTA-C-TGTTCAACTCAATA
96123929 GAGCTTACT
1 GAGCTTACT
96123938 ACATCAGCTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
43 2 0.04
44 15 0.32
45 29 0.62
46 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (45 bp):
GAGCTTACTGTTTCAGCTCGTATGAGCTTACTGTTCAACTCAATA
Found at i:96123944 original size:23 final size:23
Alignment explanation
Indices: 96123862--96123946 Score: 84
Period size: 22 Copynumber: 3.8 Consensus size: 23
96123852 CAGTTCGTAT
* *
96123862 GAGCTTACT-GTTCAACTCAATA
1 GAGCTTACTACTTCAGCTCAATA
* * *
96123884 GAGCGTACT-GTTCAGCTCGATA
1 GAGCTTACTACTTCAGCTCAATA
* *
96123906 GAGCTTACCATTTCAGCTCAATA
1 GAGCTTACTACTTCAGCTCAATA
*
96123929 GAGCTTACTACATCAGCT
1 GAGCTTACTACTTCAGCT
96123947 TAGGAGGAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
22 26 0.50
23 26 0.50
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (23 bp):
GAGCTTACTACTTCAGCTCAATA
Found at i:96126919 original size:22 final size:22
Alignment explanation
Indices: 96126891--96126991 Score: 139
Period size: 22 Copynumber: 4.6 Consensus size: 22
96126881 GTTCTAGGGT
* *
96126891 CACACGGGCGTGTCCCTTGGAC
1 CACACAGGCGTGTCCCATGGAC
* *
96126913 CACACGGGCATGTCCCATGGAC
1 CACACAGGCGTGTCCCATGGAC
*
96126935 CACACAGGCGTGTCTCATGGAC
1 CACACAGGCGTGTCCCATGGAC
*
96126957 CACACAGGCGTGTCCCTTGGAC
1 CACACAGGCGTGTCCCATGGAC
*
96126979 TACACAGGCGTGT
1 CACACAGGCGTGT
96126992 GAGCCCTGCA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 71 1.00
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.18
Consensus pattern (22 bp):
CACACAGGCGTGTCCCATGGAC
Found at i:96131340 original size:46 final size:46
Alignment explanation
Indices: 96131290--96131462 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
96131280 TGGTTGAGCA
*
96131290 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
96131336 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
96131383 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
96131429 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
96131463 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 60 0.59
47 27 0.26
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:96131439 original size:93 final size:93
Alignment explanation
Indices: 96131287--96131457 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
96131277 GGATGGTTGA
* *
96131287 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
96131352 TGAGTCCAAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
* * *
96131380 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
96131445 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
96131458 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:96137703 original size:11 final size:11
Alignment explanation
Indices: 96137687--96137725 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
96137677 TCAGCTCTTT
96137687 TTATTTTATTA
1 TTATTTTATTA
*
96137698 TTATTTTATTC
1 TTATTTTATTA
*
96137709 TAAATTTTATTA
1 T-TATTTTATTA
96137721 TTATT
1 TTATT
96137726 ATTAAGTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:96137948 original size:27 final size:25
Alignment explanation
Indices: 96137918--96137972 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
96137908 CTCTTTTGAG
* *
96137918 TTAATAAATTCTCTTTAGATTTTTCTT
1 TTAAGAAATTCTC-TT-GAGTTTTCTT
*
96137945 TTAAGAATTTCTCTTGAGTTTTCTT
1 TTAAGAAATTCTCTTGAGTTTTCTT
96137970 TTA
1 TTA
96137973 GAAGTGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 12 0.48
26 2 0.08
27 11 0.44
ACGTcount: A:0.24, C:0.11, G:0.07, T:0.58
Consensus pattern (25 bp):
TTAAGAAATTCTCTTGAGTTTTCTT
Found at i:96140799 original size:27 final size:27
Alignment explanation
Indices: 96140769--96140822 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
96140759 TCATACAACC
* *
96140769 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
96140796 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
96140823 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:96142395 original size:60 final size:60
Alignment explanation
Indices: 96142300--96142414 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
96142290 CACATACGTA
* * *
96142300 CCCCTATTTCTACTTCGGTACCCCTGATTGAACATACCTGCCCCTGTTTGTACTTTTGTG
1 CCCCTATTTCTACTACGGCACCCCTGATTGAACATACCTGCCCCTATTTGTACTTTTGTG
* * * * * *
96142360 CCCCTGTTTGTACTACGGCACCCCTGATTGCACATACGTTCCCCTATTTTTACTT
1 CCCCTATTTCTACTACGGCACCCCTGATTGAACATACCTGCCCCTATTTGTACTT
96142415 CACCCCAAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 46 1.00
ACGTcount: A:0.16, C:0.33, G:0.14, T:0.37
Consensus pattern (60 bp):
CCCCTATTTCTACTACGGCACCCCTGATTGAACATACCTGCCCCTATTTGTACTTTTGTG
Found at i:96144031 original size:68 final size:67
Alignment explanation
Indices: 96143985--96144142 Score: 271
Period size: 68 Copynumber: 2.3 Consensus size: 67
96143975 ATACTATATA
*
96143985 GTAGCTAGGTCACATGTGTGATACGGGATGTATCGCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
96144050 AAT
65 AAT
96144053 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
96144118 AAT
65 AAT
* *
96144121 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
96144143 TCCAAGTGAA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:96144216 original size:66 final size:67
Alignment explanation
Indices: 96144020--96144216 Score: 190
Period size: 68 Copynumber: 2.9 Consensus size: 67
96144010 GGATGTATCG
* * * *
96144020 CATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGAT
1 CATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGAA
*
96144082 GTATC-C
62 GGA-CAC
*
96144088 CATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGAA
1 CATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGAA
96144153 GGACAC
62 GGACAC
* *
96144159 CATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
96144217 TTCACCATGT
Statistics
Matches: 115, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 54 0.47
69 1 0.01
70 1 0.01
71 26 0.23
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (67 bp):
CATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGAC
AC
Found at i:96156689 original size:68 final size:67
Alignment explanation
Indices: 96156568--96156724 Score: 278
Period size: 68 Copynumber: 2.3 Consensus size: 67
96156558 ATACTATATA
*
96156568 GTAGCTAGGTCACATGTGTGATACGGATGTATCGCATGTAGACAAGAGAGCTACGTGAGAGATAA
1 GTAGCTAGGTCACATGTGTGATACGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATAA
96156633 AT
66 AT
96156635 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATAC-GGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
96156700 AAT
65 AAT
* *
96156703 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
96156725 TCCAAGTGAA
Statistics
Matches: 86, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
67 24 0.28
68 62 0.72
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATAA
AT
Found at i:96164146 original size:68 final size:68
Alignment explanation
Indices: 96164074--96164257 Score: 241
Period size: 68 Copynumber: 2.7 Consensus size: 68
96164064 CATCATGTGT
* * *
96164074 ACAAGAAG-GCTAC-AAGATACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCA
1 ACAAGAAGAGCTACGAAGAGA-TAAAT-GTAGCTAGGTCACATGTGTGATACGGGATGTATCACA
96164137 TGTAG
64 TGTAG
*
96164142 ACAAG-AGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCACAT
1 ACAAGAAGAGCTACG-AAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCACAT
96164206 GTAG
65 GTAG
* * *
96164210 ACAAG-AGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGAT
1 ACAAGAAGAGCTACG-AAGAGATAAATGTAGCTAGGTCACATGTGTGAT
96164258 TCCAAGTGAA
Statistics
Matches: 107, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
67 2 0.02
68 97 0.91
69 4 0.04
70 4 0.04
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.23
Consensus pattern (68 bp):
ACAAGAAGAGCTACGAAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCACATG
TAG
Found at i:96164331 original size:66 final size:67
Alignment explanation
Indices: 96164134--96164331 Score: 183
Period size: 68 Copynumber: 2.9 Consensus size: 67
96164124 GGGATGTATC
* * *
96164134 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
96164196 TGTATCA
62 AGGA-CA
*
96164203 -CATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
96164267 AGGACA
62 AGGACA
* * *
96164273 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCGTGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
96164332 TTCACCATGT
Statistics
Matches: 114, Mismatches: 10, Indels: 13
0.83 0.07 0.09
Matches are distributed among these distances:
66 23 0.20
67 9 0.08
68 54 0.47
69 1 0.01
70 2 0.02
71 25 0.22
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:96167842 original size:45 final size:44
Alignment explanation
Indices: 96167793--96167976 Score: 174
Period size: 45 Copynumber: 4.1 Consensus size: 44
96167783 TCTTCTAACC
* *
96167793 ATGGTCTTATATATTCCTGAAGTAGTGCCATAGTATCTTTCAACT
1 ATGGTCTTAT-TATTCCTGGATTAGTGCCATAGTATCTTTCAACT
** * *
96167838 ATGGTCTTATT-TGTATTGGATTTGATGCCATAGTATCTTTCAACC
1 ATGGTCTTATTAT-TCCTGGATTAG-TGCCATAGTATCTTTCAACT
* ** *
96167883 ATGATCTTATATATTTTTGGTTTAGTGCCATAGTATCTTTCAACT
1 ATGGTCTTAT-TATTCCTGGATTAGTGCCATAGTATCTTTCAACT
* * * * *
96167928 ATAGTCTTATTCACTCC-GGTTTAATGCCATAATATCTTTCAACT
1 ATGGTCTTATT-ATTCCTGGATTAGTGCCATAGTATCTTTCAACT
96167972 ATGGT
1 ATGGT
96167977 ATTTCTCATT
Statistics
Matches: 115, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
43 1 0.01
44 37 0.32
45 67 0.58
46 9 0.08
47 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (44 bp):
ATGGTCTTATTATTCCTGGATTAGTGCCATAGTATCTTTCAACT
Found at i:96167923 original size:90 final size:90
Alignment explanation
Indices: 96167770--96167938 Score: 243
Period size: 90 Copynumber: 1.9 Consensus size: 90
96167760 TTGCTTCAAA
*
96167770 TGATGCCATGATATCTTCTAACCATGGTCTTATATATTCCTGAAGTAGTGCCATAGTATCTTTCA
1 TGATGCCATGATATCTTCTAACCATGATCTTATATATTCCTGAAGTAGTGCCATAGTATCTTTCA
*
96167835 ACTATGGTCTTATTTGTATTGGATT
66 ACTATAGTCTTATTTGTATTGGATT
** ***
96167860 TGATGCCAT-AGTATCTT-TCAACCATGATCTTATATATTTTTGGTTTAGTGCCATAGTATCTTT
1 TGATGCCATGA-TATCTTCT-AACCATGATCTTATATATTCCTGAAGTAGTGCCATAGTATCTTT
96167923 CAACTATAGTCTTATT
64 CAACTATAGTCTTATT
96167939 CACTCCGGTT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
89 2 0.03
90 68 0.97
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.44
Consensus pattern (90 bp):
TGATGCCATGATATCTTCTAACCATGATCTTATATATTCCTGAAGTAGTGCCATAGTATCTTTCA
ACTATAGTCTTATTTGTATTGGATT
Found at i:96173279 original size:8 final size:8
Alignment explanation
Indices: 96173266--96173331 Score: 51
Period size: 8 Copynumber: 7.9 Consensus size: 8
96173256 CTTCTTCTTA
96173266 TTTTATTT
1 TTTTATTT
96173274 TTTTATCTT
1 TTTTAT-TT
*
96173283 CTTTATTT
1 TTTTATTT
* *
96173291 ATTTATTC
1 TTTTATTT
*
96173299 TATTATTT
1 TTTTATTT
96173307 TATTTATTT
1 T-TTTATTT
*
96173316 ATGTTATTT
1 -TTTTATTT
*
96173325 TATTATT
1 TTTTATT
96173332 CTATTTATGT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
8 26 0.57
9 19 0.41
10 1 0.02
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.74
Consensus pattern (8 bp):
TTTTATTT
Found at i:96173289 original size:17 final size:16
Alignment explanation
Indices: 96173267--96173331 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
96173257 TTCTTCTTAT
96173267 TTTATTTTTTTATCTTC
1 TTTATTTTTTTAT-TTC
*
96173284 TTTATTTATTTA-TTC
1 TTTATTTTTTTATTTC
*
96173299 TATTATTTTATTTATTTA
1 T-TTATTTT-TTTATTTC
*
96173317 TGTTATTTTATTATT
1 T-TTATTTTTTTATT
96173332 CTATTTATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 4 0.10
16 6 0.15
17 20 0.50
18 10 0.25
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTATTTTTTTATTTC
Found at i:96173302 original size:13 final size:12
Alignment explanation
Indices: 96173267--96173362 Score: 70
Period size: 13 Copynumber: 7.4 Consensus size: 12
96173257 TTCTTCTTAT
*
96173267 TTTATTTTTTTA
1 TTTATTTATTTA
*
96173279 TCTTCTTTATTTA
1 T-TTATTTATTTA
96173292 TTTATTCTA-TTA
1 TTTATT-TATTTA
96173304 TTTTATTTATTTA
1 -TTTATTTATTTA
96173317 TGTTATTT-TATTA
1 T-TTATTTAT-TTA
96173330 TTCTATTTATGTTTA
1 TT-TATTTA--TTTA
*
96173345 TTTTATTTAATTA
1 -TTTATTTATTTA
96173358 TTTAT
1 TTTAT
96173363 CCCATTTTAG
Statistics
Matches: 69, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
12 18 0.26
13 39 0.57
15 9 0.13
16 3 0.04
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (12 bp):
TTTATTTATTTA
Found at i:96173513 original size:21 final size:21
Alignment explanation
Indices: 96173489--96173530 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
96173479 AATATACTTG
96173489 TTTATTGCTCTTATTGTTCTT
1 TTTATTGCTCTTATTGTTCTT
**
96173510 TTTATTTTTCTTATTGTTCTT
1 TTTATTGCTCTTATTGTTCTT
96173531 CGTCATTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.12, G:0.07, T:0.71
Consensus pattern (21 bp):
TTTATTGCTCTTATTGTTCTT
Found at i:96173540 original size:21 final size:21
Alignment explanation
Indices: 96173497--96173539 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
96173487 TGTTTATTGC
* *
96173497 TCTTATTGTTCTTTTTATTTT
1 TCTTATTGTTCTTGTCATTTT
96173518 TCTTATTGTTCTTCGTCATTTT
1 TCTTATTGTTCTT-GTCATTTT
96173540 CATCAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (21 bp):
TCTTATTGTTCTTGTCATTTT
Found at i:96173592 original size:12 final size:12
Alignment explanation
Indices: 96173547--96173594 Score: 55
Period size: 13 Copynumber: 4.0 Consensus size: 12
96173537 TTTCATCAAA
96173547 TTAG-TATT-TT
1 TTAGTTATTATT
*
96173557 TTATGTTACTATT
1 TTA-GTTATTATT
96173570 TTAGTTTATTATT
1 TTAG-TTATTATT
96173583 TTAGTTATTATT
1 TTAGTTATTATT
96173595 ATGATCCATC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 3 0.09
11 1 0.03
12 12 0.38
13 16 0.50
ACGTcount: A:0.23, C:0.02, G:0.08, T:0.67
Consensus pattern (12 bp):
TTAGTTATTATT
Found at i:96181169 original size:40 final size:40
Alignment explanation
Indices: 96180928--96181155 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
96180918 TATTCGGATG
* *
96180928 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
96180968 A-ATTCCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
96181007 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
96181047 ATAACCGGGCTAAGTCCCGAATGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
96181087 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
96181127 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
96181156 AGCAAGTAGC
Statistics
Matches: 173, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 35 0.20
40 138 0.80
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:96189584 original size:46 final size:46
Alignment explanation
Indices: 96189534--96189709 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
96189524 TGATTGAGCA
96189534 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
96189580 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
96189625 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
96189673 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96189710 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.05
45 5 0.04
46 61 0.54
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:96189690 original size:93 final size:93
Alignment explanation
Indices: 96189531--96189702 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
96189521 GGATGATTGA
* *
96189531 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
96189596 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
96189624 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
96189688 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
96189703 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:96196935 original size:46 final size:46
Alignment explanation
Indices: 96196885--96197013 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
96196875 TGATTGAGCA
*
96196885 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
96196931 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
96196977 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96197014 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 2 0.03
46 77 0.97
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:96199259 original size:79 final size:80
Alignment explanation
Indices: 96199128--96199275 Score: 246
Period size: 79 Copynumber: 1.9 Consensus size: 80
96199118 TATTCGGATG
*
96199128 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAA-ACCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATACCGGGCTAAGACCCGAAGGCA
96199192 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* *
96199207 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-ACCGGGCTAAGACCCGAAGGC
96199271 ATTTG
65 ATTTG
96199276 AGCAAGTAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
78 2 0.03
79 48 0.75
80 14 0.22
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATACCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:96199297 original size:79 final size:79
Alignment explanation
Indices: 96199128--96199308 Score: 242
Period size: 79 Copynumber: 2.3 Consensus size: 79
96199118 TATTCGGATG
*
96199128 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAACCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATACCGGGCTAAACCCGAAGGCAT
* *
96199193 TTGTGCGAGTTACT
66 TTGAGCAAGTTACT
* *
96199207 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-ACCGGGCTAA-ACCCGAAGGC
96199271 ATTTGAGCAAG-TAGCT
64 ATTTGAGCAAGTTA-CT
* * *
96199287 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
96199309 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 64 0.70
80 25 0.27
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATACCGGGCTAAACCCGAAGGCAT
TTGAGCAAGTTACT
Found at i:96199308 original size:39 final size:40
Alignment explanation
Indices: 96199128--96199275 Score: 237
Period size: 40 Copynumber: 3.7 Consensus size: 40
96199118 TATTCGGATG
*
96199128 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
* * *
96199168 A-ATTCCGGGCTAA-ACCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
96199207 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
96199247 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
96199276 AGCAAGTAGC
Statistics
Matches: 98, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 34 0.35
40 64 0.65
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
Found at i:96213376 original size:26 final size:26
Alignment explanation
Indices: 96213299--96213377 Score: 69
Period size: 26 Copynumber: 3.1 Consensus size: 26
96213289 TCATATTTCC
*
96213299 TTTGTTCTTTATTCTCTCAATCTCTC
1 TTTGTTCTTTATTCTCTCAATCTCTT
* *
96213325 TTT-AT-TTTATAACATCAT-AAT-T-TT
1 TTTGTTCTTTAT-TC-TC-TCAATCTCTT
96213349 TTTGTTCTTTATTCTCTCAATCTCTT
1 TTTGTTCTTTATTCTCTCAATCTCTT
96213375 TTT
1 TTT
96213378 ATTTTATAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 16
0.66 0.08 0.26
Matches are distributed among these distances:
23 1 0.03
24 14 0.35
25 6 0.15
26 18 0.45
27 1 0.03
ACGTcount: A:0.18, C:0.19, G:0.03, T:0.61
Consensus pattern (26 bp):
TTTGTTCTTTATTCTCTCAATCTCTT
Found at i:96223313 original size:15 final size:15
Alignment explanation
Indices: 96223295--96223358 Score: 62
Period size: 15 Copynumber: 4.3 Consensus size: 15
96223285 TTATCTTGGG
96223295 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
96223310 TTTCTTTATTCTAGG-
1 TTTCTTTATTCT-GGA
* *
96223325 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
*
96223340 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
96223354 TTTCT
1 TTTCT
96223359 CATTATCTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
14 14 0.35
15 21 0.52
16 5 0.12
ACGTcount: A:0.12, C:0.14, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:96226230 original size:20 final size:20
Alignment explanation
Indices: 96226167--96226233 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
96226157 ATTTTGATAA
96226167 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
96226187 ACACGACATGTATGATATGC
1 ACATGATATGTATGATATGC
96226207 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
96226227 ACATGAT
1 ACATGAT
96226234 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:96226310 original size:24 final size:24
Alignment explanation
Indices: 96226283--96226461 Score: 313
Period size: 24 Copynumber: 7.4 Consensus size: 24
96226273 GAGGAAGTGC
96226283 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
96226307 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
96226331 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
96226355 AAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
* *
96226380 AAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATT
96226404 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
96226428 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
96226452 AAAAGAGGCT
1 AAAAG-GGCT
96226462 AGGGCTCCAG
Statistics
Matches: 148, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
24 120 0.81
25 28 0.19
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:96226408 original size:73 final size:72
Alignment explanation
Indices: 96226283--96226461 Score: 313
Period size: 73 Copynumber: 2.5 Consensus size: 72
96226273 GAGGAAGTGC
* *
96226283 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCCC
96226348 AGTTATT
66 AGTTATT
96226355 AAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCC
1 -AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCC
96226420 CAGTTATT
65 CAGTTATT
*
96226428 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCT
96226462 AGGGCTCCAG
Statistics
Matches: 102, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
72 28 0.27
73 74 0.73
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCCC
AGTTATT
Found at i:96252506 original size:20 final size:21
Alignment explanation
Indices: 96252468--96252507 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
96252458 ACTTATTTGA
96252468 CTATCAACAAACATTCAAAAT
1 CTATCAACAAACATTCAAAAT
*
96252489 CTATCATCAAAC-TTCAAAA
1 CTATCAACAAACATTCAAAA
96252508 CCCATACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (21 bp):
CTATCAACAAACATTCAAAAT
Found at i:96253146 original size:21 final size:21
Alignment explanation
Indices: 96253122--96253162 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
96253112 ATATGTTAAC
*
96253122 TATGTAAATAATATATTTAGT
1 TATGTAAATAATATACTTAGT
96253143 TATGTAAATAATATACTTAG
1 TATGTAAATAATATACTTAG
96253163 GAGAGAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (21 bp):
TATGTAAATAATATACTTAGT
Found at i:96253204 original size:21 final size:21
Alignment explanation
Indices: 96253166--96253205 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
96253156 TACTTAGGAG
*
96253166 AGAAGTTAAGGATTTTGATCT
1 AGAAGTTAAGGATCTTGATCT
96253187 AGAAGTT-AGAGATCTTGAT
1 AGAAGTTAAG-GATCTTGAT
96253206 AGATTTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (21 bp):
AGAAGTTAAGGATCTTGATCT
Found at i:96257889 original size:20 final size:19
Alignment explanation
Indices: 96257861--96257898 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
96257851 GTCATCCTTA
96257861 TTAGCCATGAT-TCATTCAC
1 TTAGCCATG-TGTCATTCAC
96257880 TTAGCACATGTGTCATTCA
1 TTAGC-CATGTGTCATTCA
96257899 TCACACATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (19 bp):
TTAGCCATGTGTCATTCAC
Found at i:96267809 original size:40 final size:40
Alignment explanation
Indices: 96267754--96268099 Score: 615
Period size: 40 Copynumber: 8.7 Consensus size: 40
96267744 GAGCATTGGA
96267754 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
96267794 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
96267834 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
96267874 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT-
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
96267913 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
96267953 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
96267993 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
96268033 ATATATCCGGGCTAAGACCCGAAGGCAATTATGC-AGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
96268072 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
96268100 AGTGTTTGCG
Statistics
Matches: 293, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 69 0.24
40 224 0.76
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:96268043 original size:159 final size:159
Alignment explanation
Indices: 96267754--96268099 Score: 631
Period size: 159 Copynumber: 2.2 Consensus size: 159
96267744 GAGCATTGGA
96267754 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
*
96267819 CAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGG
66 CAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGG
96267884 GCTAAGACCCGAAGGCAATTATGCGAGTT-
131 GCTAAGACCCGAAGGCAATTATGC-AGTTG
96267913 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* *
96267978 CAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGG
66 CAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGG
96268043 GCTAAGACCCGAAGGCAATTATGCAGTTG
131 GCTAAGACCCGAAGGCAATTATGCAGTTG
* *
96268072 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
96268100 AGTGTTTGCG
Statistics
Matches: 181, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
158 4 0.02
159 177 0.98
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (159 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGG
GCTAAGACCCGAAGGCAATTATGCAGTTG
Found at i:96276498 original size:40 final size:40
Alignment explanation
Indices: 96276439--96276791 Score: 589
Period size: 40 Copynumber: 8.8 Consensus size: 40
96276429 GAACATTGGA
* *
96276439 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
96276479 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
96276519 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
96276559 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
96276599 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
96276639 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
96276679 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
96276719 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTC
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
96276759 ATATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATG
96276792 TTTGCGGCTG
Statistics
Matches: 293, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 293 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:96278363 original size:15 final size:15
Alignment explanation
Indices: 96278345--96278378 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
96278335 TATATACTAT
96278345 GTATACATATATTTA
1 GTATACATATATTTA
**
96278360 GTATGTATATATTTA
1 GTATACATATATTTA
96278375 GTAT
1 GTAT
96278379 TATTACACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (15 bp):
GTATACATATATTTA
Found at i:96278905 original size:11 final size:11
Alignment explanation
Indices: 96278889--96278913 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96278879 CGTCCTTCTC
96278889 AAAAAACTAAA
1 AAAAAACTAAA
96278900 AAAAAACTAAA
1 AAAAAACTAAA
96278911 AAA
1 AAA
96278914 CTAAAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAACTAAA
Found at i:96289652 original size:47 final size:47
Alignment explanation
Indices: 96289600--96289827 Score: 332
Period size: 47 Copynumber: 4.8 Consensus size: 47
96289590 TGTACAAGTA
* * *
96289600 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
96289647 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
96289696 TGTATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
96289743 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
96289790 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
96289828 AAATGTGATA
Statistics
Matches: 167, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 126 0.75
49 40 0.24
50 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:96295701 original size:42 final size:42
Alignment explanation
Indices: 96295604--96296140 Score: 682
Period size: 42 Copynumber: 12.7 Consensus size: 42
96295594 ATTTCAGATG
* ** * *
96295604 TCGTGTAAGACCTTGTCTGGGACAGAGGCCTCG-ATTTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT--GATT
* *
96295647 TCGTGCAAGACCATGTCTGGGACATTGGCATCGTATCTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* * *
96295689 TCGTGTAAGACCATGTCTGAGACATCAGCATCGTATCTGTTT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* *
96295731 TCCTGTAAGACCATGTCTGGGACATCGGCATCGTATCTCATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
96295773 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* * * *
96295815 TCGTGTAAGGCCATGTTTGGGAGATCGGCATCGTATCTAATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* * *
96295857 TCATGTAAGACAATGTCTGGGACATCGGCATCGTATCCGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* *
96295899 TCGTGTAAGACCATGTTTGGGACATCGGCATCGTATCTAATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
*
96295941 TCGTGTAAGACCATGTCTGGGACATCGGCATCATATCTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* * * *
96295983 TCGTGTAAAACCATGTCTGGGACATCGACATCGTTTTTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* *
96296025 TCATGTAAGACCATGTCTGGGACATCGGTATCGTATCTGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
* * * **
96296067 TTGTGTAAGGCCCTGTCTGGGACAGAGGCATCG-ATACTGAATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTAT-CTG-ATT
* * * * *
96296110 ACATGTAAGACCACGTCCGGGACGTCGGCAT
1 TCGTGTAAGACCATGTCTGGGACATCGGCAT
96296141 TGTACCCATT
Statistics
Matches: 426, Mismatches: 65, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
41 2 0.00
42 369 0.87
43 52 0.12
44 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
Found at i:96302123 original size:46 final size:46
Alignment explanation
Indices: 96302050--96302411 Score: 290
Period size: 46 Copynumber: 7.8 Consensus size: 46
96302040 TATTTGGGTA
*
96302050 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
96302096 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* **
96302141 CATCCGAACTCGTTGAGCTGAGTCTAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * * *
96302189 TCCAAACTCGTTGAGTTGATTCTGAGTTCA-TGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
*
96302236 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * * *
96302282 TCTGAACTCGTTGAGTTGAATCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
96302329 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
96302375 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96302412 GCAGGTTACA
Statistics
Matches: 243, Mismatches: 54, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
42 3 0.01
43 4 0.02
45 5 0.02
46 126 0.52
47 93 0.38
48 5 0.02
50 4 0.02
51 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:96302163 original size:47 final size:47
Alignment explanation
Indices: 96302098--96302357 Score: 216
Period size: 47 Copynumber: 5.6 Consensus size: 47
96302088 TGCGAACGTT
* *
96302098 CGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCATC
* ** * *
96302145 CGAACTCGTTGAGCTGAGTCTAAGTTCACTTATGGATGCGAAC---G--TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-CTGA--GATG-TAACTAGGCATC
* * * * *
96302191 CAAACTCGTTGAGTTGATTCTGAGTTCATGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCATC
* *
96302238 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA--A-G--TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-CTGA--GATG-TAACTAGGCATC
* * * *
96302284 TGAACTCGTTGAGTTGAATCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCATC
96302331 CGAACTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
96302358 ACTTATGGAT
Statistics
Matches: 167, Mismatches: 28, Indels: 36
0.72 0.12 0.16
Matches are distributed among these distances:
42 5 0.03
43 6 0.04
44 1 0.01
45 6 0.04
46 52 0.31
47 78 0.47
48 6 0.04
49 1 0.01
50 7 0.04
51 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCCTGAGATGTAACTAGGCATC
Found at i:96302213 original size:93 final size:93
Alignment explanation
Indices: 96302049--96302404 Score: 568
Period size: 93 Copynumber: 3.8 Consensus size: 93
96302039 ATATTTGGGT
* *
96302049 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
* *
96302114 AGTCTGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAAATGTAACTAGGC
* ** *
96302142 ATCCGAACTCGTTGAGCTGAGTCTAAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
* * *
96302207 ATTCTGAGTTCATGAAATGTAACTAGGC
66 AGTCCGAGTTCGTGAAATGTAACTAGGC
* *
96302235 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCTGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
*
96302300 AATCCGAGTTCGTGAAATGTAACTAGGC
66 AGTCCGAGTTCGTGAAATGTAACTAGGC
* *
96302328 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
96302393 AGTCCGAGTTCG
66 AGTCCGAGTTCG
96302405 CTTATGGGCA
Statistics
Matches: 240, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 240 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGGC
Found at i:96306008 original size:39 final size:39
Alignment explanation
Indices: 96305871--96306005 Score: 189
Period size: 39 Copynumber: 3.5 Consensus size: 39
96305861 ATTCATTTTT
* *
96305871 AAGCATATATCACATTACACATATAATCGCATAACATTC
1 AAGCATATATCACAATACACATATAATCACATAACATTC
* * * * *
96305910 AAGCATATACCACAGTACACATATAACCATATAACATTG
1 AAGCATATATCACAATACACATATAATCACATAACATTC
* *
96305949 AAGCATATATCACAACACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACACATATAATCACATAACATTC
96305988 AAGCATATATCACAATAC
1 AAGCATATATCACAATAC
96306006 TCAAAAACAT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.25
Consensus pattern (39 bp):
AAGCATATATCACAATACACATATAATCACATAACATTC
Found at i:96309493 original size:26 final size:26
Alignment explanation
Indices: 96309457--96309514 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
96309447 AGCTTCGGAG
*
96309457 AGCCATTAATC-AGAAAGCTCCCAAAA
1 AGCCATTAATCGAGAAA-CTCACAAAA
* *
96309483 AGCCTTTAATCGAGAAACTCACGAAA
1 AGCCATTAATCGAGAAACTCACAAAA
96309509 AGCCAT
1 AGCCAT
96309515 AAAGCGGGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.43, C:0.26, G:0.14, T:0.17
Consensus pattern (26 bp):
AGCCATTAATCGAGAAACTCACAAAA
Found at i:96309615 original size:24 final size:24
Alignment explanation
Indices: 96309577--96309653 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
96309567 ACAACCAATC
* * *
96309577 GGGATGCTCCAAAGAGCTATTAAC
1 GGGAAGCTCAAAAGAGCTATTAAT
* * *
96309601 GGGAAGCTCACAAGAACCATATAAT
1 GGGAAGCTCAAAAGAGCTAT-TAAT
* *
96309626 GGAAAGCTCAAAAGGGCTATTAAT
1 GGGAAGCTCAAAAGAGCTATTAAT
96309650 GGGA
1 GGGA
96309654 CACTCTTTTG
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
24 22 0.55
25 18 0.45
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.18
Consensus pattern (24 bp):
GGGAAGCTCAAAAGAGCTATTAAT
Found at i:96313037 original size:22 final size:22
Alignment explanation
Indices: 96312986--96313053 Score: 75
Period size: 22 Copynumber: 2.9 Consensus size: 22
96312976 GCCATGATTG
*
96312986 GTAAGCTCCTCATGAGCTGATGGACA
1 GTAAGCT-CTGATGAGCTGA---ACA
96313012 GTAAGCTCT-ATTGAGCTGAACA
1 GTAAGCTCTGA-TGAGCTGAACA
96313034 GTAAGCTCTGATGAGCTGAA
1 GTAAGCTCTGATGAGCTGAA
96313054 ACATCGGTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 21 0.52
23 1 0.03
24 1 0.03
25 10 0.25
26 7 0.17
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (22 bp):
GTAAGCTCTGATGAGCTGAACA
Found at i:96313206 original size:200 final size:201
Alignment explanation
Indices: 96312926--96313333 Score: 710
Period size: 201 Copynumber: 2.0 Consensus size: 201
96312916 GGATACTCGG
* * * * *
96312926 GTGATATACATCAGTAATCTGTCAATTTATTATCATTTTAGATCTTTCGAGCCATGATTGGTAAG
1 GTGACATACATCAGTAATCTATCAATTCATTATCATTTTAGATCTTTCGAGCCATGATCGATAAG
96312991 CTCCTCATGAGCTGATGGACAGTAAGCTCTATTGAGCTG-AACAGTAAGCTCTGATGAGCTGAAA
66 CTCCTCATGAGCTGATGGACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGATGAGCTGAAA
96313055 CATCGGTAAGCTCATACGAGCTATAGTGAGTCCACAACAAATGCAGGAGCTCAACCAAATCGGTA
131 CATCGGTAAGCTCATACGAGCTATAGTGAGTCCACAACAAATGCAGGAGCTCAACCAAATCGGTA
96313120 ACCCTA
196 ACCCTA
*
96313126 GTGACATACATCAGTAATCTATCAATTCATTATCATTTTCGATCTTTCGAGCCATGATCGATAAG
1 GTGACATACATCAGTAATCTATCAATTCATTATCATTTTAGATCTTTCGAGCCATGATCGATAAG
*
96313191 CTCCTTATGAGCTGATGGACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGATGAGCTGAAA
66 CTCCTCATGAGCTGATGGACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGATGAGCTGAAA
* * * *
96313256 CATCGGTAAGCTCATACGAGTTGTGGTGAGTCCACAACAAATGCATGAGCTCAACCAAATCGGTA
131 CATCGGTAAGCTCATACGAGCTATAGTGAGTCCACAACAAATGCAGGAGCTCAACCAAATCGGTA
96313321 ACCCTA
196 ACCCTA
96313327 GTGACAT
1 GTGACAT
96313334 TTCACTTTTA
Statistics
Matches: 196, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
200 97 0.49
201 99 0.51
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (201 bp):
GTGACATACATCAGTAATCTATCAATTCATTATCATTTTAGATCTTTCGAGCCATGATCGATAAG
CTCCTCATGAGCTGATGGACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTGATGAGCTGAAA
CATCGGTAAGCTCATACGAGCTATAGTGAGTCCACAACAAATGCAGGAGCTCAACCAAATCGGTA
ACCCTA
Found at i:96313239 original size:23 final size:23
Alignment explanation
Indices: 96313209--96313257 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
96313199 GAGCTGATGG
96313209 ACAGTAAGCTCT-ATTGAGCTGAA
1 ACAGTAAGCTCTGA-TGAGCTGAA
96313232 ACAGTAAGCTCTGATGAGCTGAA
1 ACAGTAAGCTCTGATGAGCTGAA
96313255 ACA
1 ACA
96313258 TCGGTAAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (23 bp):
ACAGTAAGCTCTGATGAGCTGAA
Found at i:96313504 original size:32 final size:32
Alignment explanation
Indices: 96313463--96313523 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
96313453 ATAAACACAA
96313463 GTATTTAAAAGTTTGATTCTAATTATACATAG
1 GTATTTAAAAGTTTGATTCTAATTATACATAG
96313495 GTATTTAAAAGTTTGATTCTAATTATACA
1 GTATTTAAAAGTTTGATTCTAATTATACA
96313524 AACTTACCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (32 bp):
GTATTTAAAAGTTTGATTCTAATTATACATAG
Found at i:96322853 original size:10 final size:10
Alignment explanation
Indices: 96322839--96322896 Score: 82
Period size: 10 Copynumber: 5.8 Consensus size: 10
96322829 GTTTTAGCTT
*
96322839 TTATCTTTAT
1 TTATCTTTAA
96322849 TTATCTTTAA
1 TTATCTTTAA
96322859 TTATCTTTAA
1 TTATCTTTAA
96322869 TTATCTTTAA
1 TTATCTTTAA
*
96322879 TTAT-TTGTAT
1 TTATCTT-TAA
96322889 TTATCTTT
1 TTATCTTT
96322897 TAGAATTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
9 2 0.05
10 40 0.91
11 2 0.05
ACGTcount: A:0.24, C:0.09, G:0.02, T:0.66
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:96322864 original size:20 final size:20
Alignment explanation
Indices: 96322839--96322896 Score: 91
Period size: 20 Copynumber: 2.9 Consensus size: 20
96322829 GTTTTAGCTT
96322839 TTATCTTTATTTATCTTTAA
1 TTATCTTTATTTATCTTTAA
*
96322859 TTATCTTTAATTATCTTTAA
1 TTATCTTTATTTATCTTTAA
96322879 TTAT-TTGTATTTATCTTT
1 TTATCTT-TATTTATCTTT
96322897 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 33 0.94
ACGTcount: A:0.24, C:0.09, G:0.02, T:0.66
Consensus pattern (20 bp):
TTATCTTTATTTATCTTTAA
Found at i:96333452 original size:27 final size:27
Alignment explanation
Indices: 96333422--96333599 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
96333412 ATATTGAGTC
* * * *
96333422 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
96333449 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
96333476 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
96333504 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
96333531 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
96333558 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
96333585 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
96333600 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:96333561 original size:82 final size:81
Alignment explanation
Indices: 96333443--96333598 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
96333433 TGCTATATAA
* *
96333443 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
96333508 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
96333525 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
96333589 CACTTAGTGC
65 CACTTAGTGC
96333599 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:96341870 original size:13 final size:13
Alignment explanation
Indices: 96341852--96341878 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96341842 TAAGTAATCG
96341852 CACACGGGCGTGT
1 CACACGGGCGTGT
96341865 CACACGGGCGTGT
1 CACACGGGCGTGT
96341878 C
1 C
96341879 CCTGCCGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:96349814 original size:26 final size:25
Alignment explanation
Indices: 96349769--96349818 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
96349759 TTTCTCACAC
96349769 CAATTTTACCTGAGTAAAATTTTGG
1 CAATTTTACCTGAGTAAAATTTTGG
96349794 CAATTTTATCC-GAAGTAAAATTTTG
1 CAATTTTA-CCTG-AGTAAAATTTTG
96349819 AGAAAATTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (25 bp):
CAATTTTACCTGAGTAAAATTTTGG
Found at i:96353068 original size:27 final size:26
Alignment explanation
Indices: 96352998--96353090 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 26
96352988 CACATGGGTT
* *
96352998 TTCC-TTTTCTTAGATCGCCTCAAAGAC
1 TTCCATTTTC-TAGATTGCCACAAAG-C
* *
96353025 TTCCA-TTTCATATATTGCCATAGAAGC
1 TTCCATTTTC-TAGATTGCCACA-AAGC
* *
96353052 TTTCATTTTCTAGATTGCCACAAAGG
1 TTCCATTTTCTAGATTGCCACAAAGC
96353078 TTCCATTTTCTAG
1 TTCCATTTTCTAG
96353091 CGTATTGACG
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
26 15 0.28
27 31 0.58
28 7 0.13
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.40
Consensus pattern (26 bp):
TTCCATTTTCTAGATTGCCACAAAGC
Found at i:96354127 original size:12 final size:12
Alignment explanation
Indices: 96354110--96354134 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96354100 AGTGGACTTG
96354110 ACACGTGTAACT
1 ACACGTGTAACT
96354122 ACACGTGTAACT
1 ACACGTGTAACT
96354134 A
1 A
96354135 ACTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (12 bp):
ACACGTGTAACT
Found at i:96357187 original size:18 final size:19
Alignment explanation
Indices: 96357166--96357207 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
96357156 TGTTTAAAAC
96357166 TTAATTAACAT-TTA-TTAA
1 TTAATTAA-ATCTTATTTAA
96357184 TTAATTAAATCTTATTTAA
1 TTAATTAAATCTTATTTAA
96357203 TTAAT
1 TTAAT
96357208 CCTTAATCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 2 0.09
18 11 0.50
19 9 0.41
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (19 bp):
TTAATTAAATCTTATTTAA
Found at i:96363124 original size:30 final size:29
Alignment explanation
Indices: 96363090--96363146 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
96363080 CCGAGCCTAG
96363090 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTGT-AATATGCAAAAGTTTAA
* * *
96363120 GGGCAAAATTGTAATTTTCAAAAGTTT
1 GGGCAAAAGTGTAATATGCAAAAGTTT
96363147 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (29 bp):
GGGCAAAAGTGTAATATGCAAAAGTTTAA
Found at i:96370750 original size:43 final size:43
Alignment explanation
Indices: 96370689--96370933 Score: 348
Period size: 43 Copynumber: 5.7 Consensus size: 43
96370679 CAACAAACTT
* * * *
96370689 GCACACTTAGTGCTAATTAATTAACCGAAGTTATAATGGTTTC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
96370732 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
*
96370775 GCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
* * * *
96370818 GCACACTTAGTGCCAATTAATTAGCCAAAGCTATAACTATATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
* *
96370861 GCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTATATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
**
96370904 ATACACTTAGTGCC-ATTACATTAAACCGAA
1 GCACACTTAGTGCCAATTA-ATT-AACCGAA
96370934 CTTATATCTG
Statistics
Matches: 187, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
42 4 0.02
43 177 0.95
44 6 0.03
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (43 bp):
GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
Found at i:96372793 original size:20 final size:18
Alignment explanation
Indices: 96372759--96372795 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
96372749 GCAACTCATA
96372759 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
96372777 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
96372796 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:96374979 original size:45 final size:45
Alignment explanation
Indices: 96374848--96374979 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 45
96374838 TAGACTTTTC
* * *
96374848 TCATATCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
* * **
96374890 TCATTTCACCGGCATTATAGCCTACTAGGCTCGAAA-GCTTGAATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATA
*
96374935 GT-ATCTCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 -TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
96374980 ATATTTCCCC
Statistics
Matches: 73, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
42 15 0.21
43 13 0.18
44 6 0.08
45 38 0.52
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (45 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
Found at i:96375208 original size:43 final size:43
Alignment explanation
Indices: 96375147--96375348 Score: 280
Period size: 43 Copynumber: 4.7 Consensus size: 43
96375137 CAACAAACTT
* * ** *
96375147 GCACACTTAGTGCTAATTAATTAACCGAAGTTATAATGGTTTC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTATATC
*
96375190 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTATATC
* *
96375233 GCACACTTAGTGCCAATTAATTAGCCAAAGCTATAATTATATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTATATC
*
96375276 GCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTATATC
1 GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTATATC
**
96375319 ATACACTTAGTGCC-ATTACATTAAACCGAA
1 GCACACTTAGTGCCAATTA-ATT-AACCGAA
96375349 CTTATATCTG
Statistics
Matches: 146, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.03
43 136 0.93
44 6 0.04
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (43 bp):
GCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTATATC
Found at i:96376697 original size:20 final size:18
Alignment explanation
Indices: 96376663--96376699 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
96376653 GCAACTCATA
96376663 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
96376681 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
96376700 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:96379360 original size:47 final size:47
Alignment explanation
Indices: 96379185--96379634 Score: 630
Period size: 47 Copynumber: 9.4 Consensus size: 47
96379175 CAGCCAAGAG
96379185 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
96379232 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
96379283 AGTGTATGTATATATGTAATAAGGTCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
96379334 AGTGTATATGTGTGATGAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
96379381 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
96379428 AGTGTATATATATAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
96379475 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
96379522 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
96379569 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
96379616 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
96379635 TCCCGAAAGG
Statistics
Matches: 369, Mismatches: 30, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 273 0.74
49 2 0.01
51 94 0.25
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:96379809 original size:37 final size:37
Alignment explanation
Indices: 96379753--96379831 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
96379743 CCGAGCTCTA
* * *
96379753 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
96379790 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
96379827 AAGAC
1 AAGAC
96379832 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:96381734 original size:43 final size:43
Alignment explanation
Indices: 96381686--96381874 Score: 360
Period size: 43 Copynumber: 4.4 Consensus size: 43
96381676 TTGGTTTTCA
96381686 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
96381729 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
96381772 GCACTAAGTGTGCGGGCAATAAGTGTTCGCGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
96381815 GCACTAAGTGTGCGGGCAGTAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
96381858 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
96381875 TTGAAATGCA
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 143 1.00
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:96381891 original size:29 final size:29
Alignment explanation
Indices: 96381856--96381929 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
96381846 GTTGTGAGAT
* *
96381856 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
96381885 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
96381914 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
96381930 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:96382363 original size:40 final size:40
Alignment explanation
Indices: 96382240--96382515 Score: 279
Period size: 40 Copynumber: 6.9 Consensus size: 40
96382230 TCGAATGATG
**
96382240 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGATCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGAT-ATA
* * ** * * *
96382280 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* * *
96382320 TCCGGGCTAAGTCCCAAAGCGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
96382360 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
96382400 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
96382440 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
96382480 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
96382516 CGTGTATTCG
Statistics
Matches: 199, Mismatches: 34, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
40 180 0.90
41 19 0.10
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:96386209 original size:47 final size:47
Alignment explanation
Indices: 96386034--96386482 Score: 585
Period size: 47 Copynumber: 9.4 Consensus size: 47
96386024 CAGCCAAGAG
96386034 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
96386081 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
96386132 AGTGTATGTATATATGTAATAACGTCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * ** *
96386183 AGTGTATATGTGTGATGAGGCCTAATAGCCGACATGATGAATGTTAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
96386230 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
96386277 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* **
96386324 AGTGTATATATGTGATAAGGCCTAATGGTCGATGCAATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
96386371 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
96386418 AGTGT-TATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
96386464 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
96386483 TCCCGAAAGG
Statistics
Matches: 359, Mismatches: 38, Indels: 10
0.88 0.09 0.02
Matches are distributed among these distances:
46 37 0.10
47 227 0.63
49 2 0.01
51 93 0.26
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:96386643 original size:37 final size:37
Alignment explanation
Indices: 96386601--96386679 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
96386591 CCGAGCTCTA
* * *
96386601 AAGACCCGATGACTACGTGTGGGGATTTTATCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
* *
96386638 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
96386675 AAGAC
1 AAGAC
96386680 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
Found at i:96391224 original size:9 final size:8
Alignment explanation
Indices: 96391208--96391232 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
96391198 GGAGTTAGGA
96391208 TATTTTTT
1 TATTTTTT
96391216 TATTTTTT
1 TATTTTTT
96391224 TATTTTTT
1 TATTTTTT
96391232 T
1 T
96391233 CTTCCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TATTTTTT
Found at i:96394692 original size:45 final size:42
Alignment explanation
Indices: 96394641--96394826 Score: 167
Period size: 45 Copynumber: 4.1 Consensus size: 42
96394631 TTTAGCCATA
*
96394641 GTCTTATCTATTTC-TAACAAGATGTCATAGTGTCTTTCAGCTATG
1 GTCTTAT-TATTTCGT-A-AAG-TGTCATAGTGTCTTTCAACTATG
*
96394686 GTCTTATTCATTTTCGGTATAGTGTCATAGTGTCTTTCAACTATG
1 GTCTTATT-A-TTTC-GTAAAGTGTCATAGTGTCTTTCAACTATG
* * * * *
96394731 GTCTTATTTATTTTTGGTATAGTGCCATAGTGTCATTCAAATATG
1 GTCTTA-TTA--TTTCGTAAAGTGTCATAGTGTCTTTCAACTATG
* *
96394776 GTCTTATTTATTTTCGGTATAGTGCCATAGTGTCTTTCAACTATG
1 GTCTTA-TTA-TTTC-GTAAAGTGTCATAGTGTCTTTCAACTATG
96394821 GTCTTA
1 GTCTTA
96394827 ATCATTTTTC
Statistics
Matches: 125, Mismatches: 9, Indels: 14
0.84 0.06 0.09
Matches are distributed among these distances:
44 5 0.04
45 106 0.85
46 12 0.10
47 1 0.01
48 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46
Consensus pattern (42 bp):
GTCTTATTATTTCGTAAAGTGTCATAGTGTCTTTCAACTATG
Done.