Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 298 of 356
Found at i:97157023 original size:16 final size:16
Alignment explanation
Indices: 97156987--97157041 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
97156977 AAGGAGTACA
97156987 TGAAGTAAAG-GCTAA-
1 TGAAG-AAAGTGCTAAG
97157002 TCGAAGAAAGTGCTAAG
1 T-GAAGAAAGTGCTAAG
* **
97157019 TGAAGTAAGTTTTAAG
1 TGAAGAAAGTGCTAAG
97157035 TGAAGAA
1 TGAAGAA
97157042 TTTATACTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 5 0.15
16 27 0.82
17 1 0.03
ACGTcount: A:0.44, C:0.05, G:0.27, T:0.24
Consensus pattern (16 bp):
TGAAGAAAGTGCTAAG
Found at i:97157253 original size:15 final size:15
Alignment explanation
Indices: 97157233--97157262 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97157223 TGTAGATTGC
97157233 ACAAAGTGATCGAGT
1 ACAAAGTGATCGAGT
*
97157248 ACAAAGTGTTCGAGT
1 ACAAAGTGATCGAGT
97157263 GTGGTTTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (15 bp):
ACAAAGTGATCGAGT
Found at i:97161415 original size:13 final size:13
Alignment explanation
Indices: 97161397--97161433 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
97161387 TATATTTTTC
*
97161397 AAAAATTATATAA
1 AAAAATAATATAA
97161410 AAAAATAATATAA
1 AAAAATAATATAA
*
97161423 AAAATTAATAT
1 AAAAATAATAT
97161434 GAGCGGGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAAATAATATAA
Found at i:97163409 original size:20 final size:20
Alignment explanation
Indices: 97163367--97163409 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
97163357 AAAAAAATAT
*
97163367 AAAATTATATAATATTTTAA
1 AAAATTATATAATATTTCAA
97163387 AAAATTA-ATAAATATTTCCAA
1 AAAATTATAT-AATATTT-CAA
97163408 AA
1 AA
97163410 TCTTGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 2 0.10
20 14 0.70
21 4 0.20
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATTATATAATATTTCAA
Found at i:97190194 original size:23 final size:21
Alignment explanation
Indices: 97190145--97190196 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
97190135 CGAATAGGTG
97190145 TGTAATGAAAATATCAAAAAA
1 TGTAATGAAAATATCAAAAAA
97190166 TGTAATGAAAATATCAAAAAA
1 TGTAATGAAAATATCAAAAAA
97190187 TAGCTAATGA
1 T-G-TAATGA
97190197 CGTGAAGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 22 0.76
22 1 0.03
23 6 0.21
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.25
Consensus pattern (21 bp):
TGTAATGAAAATATCAAAAAA
Found at i:97191209 original size:32 final size:32
Alignment explanation
Indices: 97191173--97191244 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
97191163 TAGTTAGGCC
*
97191173 GTGTGGGCCACACGGCCTAGGTTATTTGGGTT
1 GTGTGGGCCACACGGCCTAGGTTATTGGGGTT
* * ** *
97191205 GTGTGGGTCATACGGGTTGGGTTATTGGGGTT
1 GTGTGGGCCACACGGCCTAGGTTATTGGGGTT
97191237 GTGTGGGC
1 GTGTGGGC
97191245 TATATGGGCG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.10, C:0.12, G:0.44, T:0.33
Consensus pattern (32 bp):
GTGTGGGCCACACGGCCTAGGTTATTGGGGTT
Found at i:97199513 original size:20 final size:20
Alignment explanation
Indices: 97199475--97199513 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
97199465 GTCCAGTCCT
*
97199475 AAGTCAGAAGATTACCTAAA
1 AAGTCAGAAGATTAACTAAA
97199495 AAGTCA-AAGATTAAACTAA
1 AAGTCAGAAGATT-AACTAA
97199514 GGGGTAAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.54, C:0.13, G:0.13, T:0.21
Consensus pattern (20 bp):
AAGTCAGAAGATTAACTAAA
Found at i:97207304 original size:609 final size:609
Alignment explanation
Indices: 97206145--97207366 Score: 2221
Period size: 609 Copynumber: 2.0 Consensus size: 609
97206135 AAAGAGCAAA
97206145 AGTATTCTATTATTCTAACTATGAATATTCAAAAATAGTTCAATATAGCAAAGAAATCATGAAAT
1 AGTATTCTATTATTCTAACTATGAATATTCAAAAATAGTTCAATATAGCAAAGAAATCATGAAAT
97206210 AAGCAATATATGTAGAGAAAATAGAGAGAAAAGAATAAAAAATGCAAAAAGAAGGAACTTGGGGT
66 AAGCAATATATGTAGAGAAAATAGAGAGAAAAGAATAAAAAATGCAAAAAGAAGGAACTTGGGGT
*
97206275 GTCGAAATCGGTGTTGTAAGCGGCGCACGGGTGTGGGGGGTAGGGTGTGTGGAGTTGCAGCGGCT
131 GTCGAAATCGGTGTTGTAAGCGGCGCACGGGTGTGGGGGGTAGAGTGTGTGGAGTTGCAGCGGCT
97206340 AGGGTTAGGGATTTTTGAGGAGGAAGATGATGAATAGTGAGGGGTTTTAAAGATTTTAGGTCACA
196 AGGGTTAGGGATTTTTGAGGAGGAAGATGATGAATAGTGAGGGGTTTTAAAGATTTTAGGTCACA
* *
97206405 CGGCTATGGGACACGCCCGTGTGCCCTAATTTTTGCCCATGTGTTTCGTGAATTTTGAGTATGGG
261 CGGCTATGGGACACGCCCGTGTGCCATAATTTTTGCCCATGTGTTTCGTGAATTTTGAATATGGG
* *
97206470 CGCGTCTGGCATTCGGCCCACTCCCGTGTCACACAGCCGTGTCTCGTTTGGTTCGCTTCTCCCAT
326 CGCGTCTGGCATTCGGCCCACGCCCGTGTCACACAGCCGTGTCTCGCTTGGTTCGCTTCTCCCAT
*
97206535 GCCCGTGTTAACTTGATAGGTTCACCCATGGATGATAGGTACGGGTGTGTCGCATGCCCGTGCTA
391 GCCCGTGTTAACTTGATAGGTTCACCCATGGATGATAGGCACGGGTGTGTCGCATGCCCGTGCTA
*
97206600 GTTTGGCAGGTTCGTCCACGGCCATGTAGCACTGCCGTGGCGACTTTATCGCTTCCTGTGTTGGA
456 GTTTGGCAGGTTCGTCCACGGCCATGTAGCACTGCCGTGGCAACTTTATCGCTTCCTGTGTTGGA
* * *
97206665 AAATTTTTTCCCTATTTTCGCACAACCTAAGGTACGCCCGTGTGCCTGGCCGTGTGGTATTTAGA
521 AAAATTTTGCCCTATTTTCGCACAACCTAAGATACGCCCGTGTGCCTGGCCGTGTGGTATTTAGA
*
97206730 GAATCTGTATACCATGATTCAGTT
586 GAATCTATATACCATGATTCAGTT
97206754 AGTATTCTATTATTCTAACTATGAATATTCAAAAATAGTTCAATATAGCAAAGAAATCATGAAAT
1 AGTATTCTATTATTCTAACTATGAATATTCAAAAATAGTTCAATATAGCAAAGAAATCATGAAAT
* *
97206819 AAGTAATATATGTAGAGAAAATAGAGAGAAAAGAGTAAACAAATGCAAAAAGAAGGAACTTGGGG
66 AAGCAATATATGTAGAGAAAATAGAGAGAAAAGAATAAA-AAATGCAAAAAGAAGGAACTTGGGG
*
97206884 TGTCGAAATCGGTGTTGTAGGCGGCGCACGGGTGT-GGGGGTAGAGTGTGTGGAGTTGCAGCGGC
130 TGTCGAAATCGGTGTTGTAAGCGGCGCACGGGTGTGGGGGGTAGAGTGTGTGGAGTTGCAGCGGC
* *
97206948 TAGGGTTAGGGATTTTTGGGGAGGGAGATGATGAATAGTGAGGGGTTTTAAAGATTTTAGGTCAC
195 TAGGGTTAGGGATTTTTGAGGAGGAAGATGATGAATAGTGAGGGGTTTTAAAGATTTTAGGTCAC
97207013 ACGGCTATGGGACACGCCCGTGTGCCATAATTTTTGCCCATGTGTTTCGTGAATTTTGAATATGG
260 ACGGCTATGGGACACGCCCGTGTGCCATAATTTTTGCCCATGTGTTTCGTGAATTTTGAATATGG
* *
97207078 GCGCGTCTGGCATTCGGCCCACGCCCGTGTCACGCAGTCGTGTCTCGCTTGGTTCGCTTCTCCCA
325 GCGCGTCTGGCATTCGGCCCACGCCCGTGTCACACAGCCGTGTCTCGCTTGGTTCGCTTCTCCCA
*
97207143 TGCCCGTGTTAACTTGATAGGTTCGCCCATGGATGATAGGCACGGGTGTGTCGCATGCCCGTGCT
390 TGCCCGTGTTAACTTGATAGGTTCACCCATGGATGATAGGCACGGGTGTGTCGCATGCCCGTGCT
*
97207208 AGTTTGGCAGGTTCGTCCACGGCCATGTAGCACTGCCGTGGTAACTTTATCGCTTCCTGTGTTGG
455 AGTTTGGCAGGTTCGTCCACGGCCATGTAGCACTGCCGTGGCAACTTTATCGCTTCCTGTGTTGG
* * *
97207273 AAAAATTTTGCCCTGTTTTCGCACGACCTAAGATACGCCCGTGTGTCTGGCCGTGTGGTATTTAG
520 AAAAATTTTGCCCTATTTTCGCACAACCTAAGATACGCCCGTGTGCCTGGCCGTGTGGTATTTAG
97207338 AGAATCTATATACCATGATTCAGTT
585 AGAATCTATATACCATGATTCAGTT
97207363 AGTA
1 AGTA
97207367 CGTTAGACAT
Statistics
Matches: 589, Mismatches: 23, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
609 530 0.90
610 59 0.10
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (609 bp):
AGTATTCTATTATTCTAACTATGAATATTCAAAAATAGTTCAATATAGCAAAGAAATCATGAAAT
AAGCAATATATGTAGAGAAAATAGAGAGAAAAGAATAAAAAATGCAAAAAGAAGGAACTTGGGGT
GTCGAAATCGGTGTTGTAAGCGGCGCACGGGTGTGGGGGGTAGAGTGTGTGGAGTTGCAGCGGCT
AGGGTTAGGGATTTTTGAGGAGGAAGATGATGAATAGTGAGGGGTTTTAAAGATTTTAGGTCACA
CGGCTATGGGACACGCCCGTGTGCCATAATTTTTGCCCATGTGTTTCGTGAATTTTGAATATGGG
CGCGTCTGGCATTCGGCCCACGCCCGTGTCACACAGCCGTGTCTCGCTTGGTTCGCTTCTCCCAT
GCCCGTGTTAACTTGATAGGTTCACCCATGGATGATAGGCACGGGTGTGTCGCATGCCCGTGCTA
GTTTGGCAGGTTCGTCCACGGCCATGTAGCACTGCCGTGGCAACTTTATCGCTTCCTGTGTTGGA
AAAATTTTGCCCTATTTTCGCACAACCTAAGATACGCCCGTGTGCCTGGCCGTGTGGTATTTAGA
GAATCTATATACCATGATTCAGTT
Found at i:97207407 original size:38 final size:38
Alignment explanation
Indices: 97207365--97207449 Score: 143
Period size: 38 Copynumber: 2.2 Consensus size: 38
97207355 ATTCAGTTAG
* *
97207365 TACGTTAGACATTAAAAACTTAAATTTAAATAAATTAA
1 TACGTTAGACATTAAAAACTCAAATTTAAAGAAATTAA
97207403 TACGTTAGACATTAAAAACTCAAATTTAAAGAAATTAA
1 TACGTTAGACATTAAAAACTCAAATTTAAAGAAATTAA
97207441 TACTGTTAG
1 TAC-GTTAG
97207450 TGCTCGGGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 39 0.89
39 5 0.11
ACGTcount: A:0.49, C:0.09, G:0.08, T:0.33
Consensus pattern (38 bp):
TACGTTAGACATTAAAAACTCAAATTTAAAGAAATTAA
Found at i:97212938 original size:18 final size:18
Alignment explanation
Indices: 97212901--97212939 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
97212891 AGTATAGTTT
*
97212901 CTATCAGTTTCAGTTTCA
1 CTATCAGTTTCAGTTACA
97212919 CTAT-AGTTTCAGTATACA
1 CTATCAGTTTCAGT-TACA
97212937 CTA
1 CTA
97212940 ACTAAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (18 bp):
CTATCAGTTTCAGTTACA
Found at i:97217223 original size:18 final size:19
Alignment explanation
Indices: 97217181--97217225 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
97217171 TCAAGATCTT
97217181 AAATTAATGTGGTCCAAAG
1 AAATTAATGTGGTCCAAAG
97217200 AAATTAATGTGGTCCAAA-
1 AAATTAATGTGGTCCAAAG
97217218 AAATTAAT
1 AAATTAAT
97217226 TAGTACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.29
Consensus pattern (19 bp):
AAATTAATGTGGTCCAAAG
Found at i:97217371 original size:117 final size:118
Alignment explanation
Indices: 97217222--97217467 Score: 431
Period size: 117 Copynumber: 2.1 Consensus size: 118
97217212 TCCAAAAAAT
* *
97217222 TAATTAGTACATTTTTCAAATATCTTCGTTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
1 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
* *
97217287 GTCCAAAAAATTAGAGTCAACATCTTAAAAAAGG-GGAAAATTAATTTTGTTG
66 GTCCAAAAAATTAGAGTCAACATCCTAAAAAAGGAGAAAAATTAATTTTGTTG
*
97217339 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACGTCTTAAATTAATTAGTGTAATCAATTTA
1 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
97217404 GTCCAAAAAATTAGAGTCAACATCCTAAAAAAGGAGAAAAATTAATTTTGTTG
66 GTCCAAAAAATTAGAGTCAACATCCTAAAAAAGGAGAAAAATTAATTTTGTTG
*
97217457 TAATTAATACA
1 TAATTAGTACA
97217468 ATAAATAGGC
Statistics
Matches: 122, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
117 95 0.78
118 27 0.22
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (118 bp):
TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
GTCCAAAAAATTAGAGTCAACATCCTAAAAAAGGAGAAAAATTAATTTTGTTG
Found at i:97221950 original size:8 final size:9
Alignment explanation
Indices: 97221928--97221954 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
97221918 TTTTTAAAAT
97221928 ATTTTTTAA
1 ATTTTTTAA
97221937 ATTTTTTAA
1 ATTTTTTAA
97221946 ATTTTTTAA
1 ATTTTTTAA
97221955 TAGGTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTTTTTAA
Found at i:97223078 original size:34 final size:33
Alignment explanation
Indices: 97223020--97223098 Score: 124
Period size: 34 Copynumber: 2.4 Consensus size: 33
97223010 AGAAAAGTAT
*
97223020 GTACCAATTTGG-AAAAAAAAGGTATAATTTTG
1 GTACCAATTTGGAAAAAAAAAGGTATAATTTAG
*
97223052 GTACTAATTTGGAAAAAAAAAGGGTATAATTTAG
1 GTACCAATTTGGAAAAAAAAA-GGTATAATTTAG
97223086 GTACCAATTTGGA
1 GTACCAATTTGGA
97223099 CTAATGGAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
32 11 0.26
33 8 0.19
34 23 0.55
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.30
Consensus pattern (33 bp):
GTACCAATTTGGAAAAAAAAAGGTATAATTTAG
Found at i:97225371 original size:47 final size:43
Alignment explanation
Indices: 97225286--97225376 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 43
97225276 GATCAACTAT
97225286 AAAAAATTATTTATGAATTACTATAAATATAAAATATTTTTTC
1 AAAAAATTATTTATGAATTACTATAAATATAAAATATTTTTTC
*
97225329 AAAAAATTAATATTATGAATTATTATTTTAAAT-TAAAATATTTTTTC
1 AAAAAATT-AT-TTATGAATTACTA---TAAATATAAAATATTTTTTC
97225376 A
1 A
97225377 GTACCCGTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
43 8 0.19
44 2 0.05
45 12 0.29
47 15 0.36
48 5 0.12
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
AAAAAATTATTTATGAATTACTATAAATATAAAATATTTTTTC
Found at i:97236881 original size:83 final size:83
Alignment explanation
Indices: 97236742--97236909 Score: 336
Period size: 83 Copynumber: 2.0 Consensus size: 83
97236732 TAAGTTGCTT
97236742 GGGCTTTTCAACTTTAGACATTAAAGGGGAAAGAAACCGTTAAAAAGAAAAAGAAAGGGCCATGG
1 GGGCTTTTCAACTTTAGACATTAAAGGGGAAAGAAACCGTTAAAAAGAAAAAGAAAGGGCCATGG
97236807 GTAAAATTAGAATAAAAG
66 GTAAAATTAGAATAAAAG
97236825 GGGCTTTTCAACTTTAGACATTAAAGGGGAAAGAAACCGTTAAAAAGAAAAAGAAAGGGCCATGG
1 GGGCTTTTCAACTTTAGACATTAAAGGGGAAAGAAACCGTTAAAAAGAAAAAGAAAGGGCCATGG
97236890 GTAAAATTAGAATAAAAG
66 GTAAAATTAGAATAAAAG
97236908 GG
1 GG
97236910 CTGTGTTGAG
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (83 bp):
GGGCTTTTCAACTTTAGACATTAAAGGGGAAAGAAACCGTTAAAAAGAAAAAGAAAGGGCCATGG
GTAAAATTAGAATAAAAG
Found at i:97237230 original size:18 final size:18
Alignment explanation
Indices: 97237209--97237243 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97237199 ATTTTTGTAA
* *
97237209 TATATTTTATTTAATTTT
1 TATATATTATATAATTTT
97237227 TATATATTATATAATTT
1 TATATATTATATAATTT
97237244 ACTTTACTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TATATATTATATAATTTT
Found at i:97239635 original size:12 final size:12
Alignment explanation
Indices: 97239618--97239645 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
97239608 TGTACTTAGA
97239618 TATGCAACACTT
1 TATGCAACACTT
97239630 TATGCAACACTT
1 TATGCAACACTT
97239642 TATG
1 TATG
97239646 TTAACCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (12 bp):
TATGCAACACTT
Found at i:97246628 original size:21 final size:21
Alignment explanation
Indices: 97246604--97246645 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
97246594 TAAGAAGGTT
97246604 GAGAGAGAGAGACAGAAATTA
1 GAGAGAGAGAGACAGAAATTA
*
97246625 GAGAGAGAGAGAGAGAAATTA
1 GAGAGAGAGAGACAGAAATTA
97246646 ACACTTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.02, G:0.36, T:0.10
Consensus pattern (21 bp):
GAGAGAGAGAGACAGAAATTA
Found at i:97252051 original size:171 final size:171
Alignment explanation
Indices: 97251766--97252117 Score: 695
Period size: 171 Copynumber: 2.1 Consensus size: 171
97251756 TACACATCAG
97251766 TCTCCTTAACCTTAAACTAATGATAGCCAGAACGAAGGTCAAATTTAGAAAACATATATGCTCAT
1 TCTCCTTAACCTTAAACTAATGATAGCCAGAACGAAGGTCAAATTTAGAAAACATATATGCTCAT
97251831 AGAAATTGATCAAATAAATTGTTGATTCTCGATAGCAGATATTTATTCTTTACTGTGAACTTGTT
66 AGAAATTGATCAAATAAATTGTTGATTCTCGATAGCAGATATTTATTCTTTACTGTGAACTTGTT
97251896 CAGCTAACGATAATCTATACACATTCTCATCGTACCATTCT
131 CAGCTAACGATAATCTATACACATTCTCATCGTACCATTCT
97251937 TCTCCTTAACCTTAAACTAATGATAGCCAGAACGAAGGTCAAATTTAGAAAACATATATGCTCAT
1 TCTCCTTAACCTTAAACTAATGATAGCCAGAACGAAGGTCAAATTTAGAAAACATATATGCTCAT
97252002 AGAAATTGATCAAATAAATTGTTGATTCTCGATAGCAGATATTTATTCTTTACTGTGAACTTGTT
66 AGAAATTGATCAAATAAATTGTTGATTCTCGATAGCAGATATTTATTCTTTACTGTGAACTTGTT
97252067 CAGCTAACGATAATCTATACACATTCTCATCGTACCATTCT
131 CAGCTAACGATAATCTATACACATTCTCATCGTACCATTCT
*
97252108 TCTTCTTAAC
1 TCTCCTTAAC
97252118 AAAAAAACCT
Statistics
Matches: 180, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
171 180 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (171 bp):
TCTCCTTAACCTTAAACTAATGATAGCCAGAACGAAGGTCAAATTTAGAAAACATATATGCTCAT
AGAAATTGATCAAATAAATTGTTGATTCTCGATAGCAGATATTTATTCTTTACTGTGAACTTGTT
CAGCTAACGATAATCTATACACATTCTCATCGTACCATTCT
Found at i:97259792 original size:20 final size:20
Alignment explanation
Indices: 97259767--97259806 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
97259757 TTCTGTATAT
97259767 GCATGCCATAACACATTGCA
1 GCATGCCATAACACATTGCA
97259787 GCATGCCATAACACATTGCA
1 GCATGCCATAACACATTGCA
97259807 TCAGACTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.30, G:0.15, T:0.20
Consensus pattern (20 bp):
GCATGCCATAACACATTGCA
Found at i:97260163 original size:15 final size:15
Alignment explanation
Indices: 97260123--97260164 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
97260113 TCCTCTGTGT
* *
97260123 AGTTCTGTTCGATTC
1 AGTTCTGCTCTATTC
*
97260138 AGTTCTACTCTATTC
1 AGTTCTGCTCTATTC
97260153 AGTTCTGCTCTA
1 AGTTCTGCTCTA
97260165 CTTTGTTCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.24, G:0.14, T:0.45
Consensus pattern (15 bp):
AGTTCTGCTCTATTC
Found at i:97260896 original size:3 final size:3
Alignment explanation
Indices: 97260888--97260920 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
97260878 ACAATATCTT
97260888 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
97260921 TTCTTCTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:97260925 original size:3 final size:3
Alignment explanation
Indices: 97260919--97260975 Score: 96
Period size: 3 Copynumber: 19.0 Consensus size: 3
97260909 ATCATCATCA
*
97260919 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
97260967 TCT TAT TCT
1 TCT TCT TCT
97260976 GTTGCTGCTA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:97269826 original size:17 final size:18
Alignment explanation
Indices: 97269804--97269837 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97269794 TTACAGAACG
*
97269804 ATTAAG-ATTTTAAATAT
1 ATTAAGTATGTTAAATAT
97269821 ATTAAGTATGTTAAATA
1 ATTAAGTATGTTAAATA
97269838 ATAAATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (18 bp):
ATTAAGTATGTTAAATAT
Found at i:97273170 original size:5 final size:5
Alignment explanation
Indices: 97273160--97273188 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
97273150 TAACATATAT
97273160 TATCA TATCA TATCA TATCA TATCA TATC
1 TATCA TATCA TATCA TATCA TATCA TATC
97273189 CCCATCCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (5 bp):
TATCA
Found at i:97276451 original size:13 final size:13
Alignment explanation
Indices: 97276433--97276464 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
97276423 ATTATAATAG
97276433 TAATATAATATAA
1 TAATATAATATAA
97276446 TAATATAATATAA
1 TAATATAATATAA
97276459 TAATAT
1 TAATAT
97276465 TTTCTTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATATAATATAA
Found at i:97283164 original size:42 final size:43
Alignment explanation
Indices: 97283118--97283198 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 43
97283108 TCATATGGCT
* *
97283118 CACACAACCTGGACAAATGCCTATTTCCT-TGCCCGTGTGAAC
1 CACACAACCTGGACAAATACCTATGTCCTCTGCCCGTGTGAAC
** * *
97283160 CACACGGCTTGGACACATACCTATGTCCTCTGCCCGTGT
1 CACACAACCTGGACAAATACCTATGTCCTCTGCCCGTGT
97283199 AGTTCTAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 23 0.72
43 9 0.28
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.25
Consensus pattern (43 bp):
CACACAACCTGGACAAATACCTATGTCCTCTGCCCGTGTGAAC
Found at i:97284787 original size:5 final size:6
Alignment explanation
Indices: 97284768--97284798 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
97284758 AAAGAAATAT
97284768 AAAGAA AAAGAA AAAGAA AAAGAA AAGAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AA-AGAA
97284799 TAAAATGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:97285529 original size:11 final size:10
Alignment explanation
Indices: 97285515--97285608 Score: 53
Period size: 11 Copynumber: 8.3 Consensus size: 10
97285505 CCTTTCTTGT
97285515 ATATTAACTAA
1 ATATTAA-TAA
*
97285526 ATATGAATAAA
1 ATATTAAT-AA
97285537 ATATTAATAAA
1 ATATTAAT-AA
97285548 ATATCTTAATAAA
1 ATA--TTAAT-AA
*
97285561 ATATTATTAAA
1 ATATTAAT-AA
97285572 ATATCTTAATAAA
1 ATA--TTAAT-AA
*
97285585 ATATTATTAAA
1 ATATTAAT-AA
*
97285596 ATAGTAATAA
1 ATATTAATAA
97285606 ATA
1 ATA
97285609 ATTTCACCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
10 6 0.08
11 44 0.62
13 21 0.30
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.37
Consensus pattern (10 bp):
ATATTAATAA
Found at i:97285558 original size:13 final size:12
Alignment explanation
Indices: 97285531--97285598 Score: 79
Period size: 11 Copynumber: 5.8 Consensus size: 12
97285521 ACTAAATATG
97285531 AATAAAATA-TT
1 AATAAAATATTT
97285542 AATAAAATATCTT
1 AATAAAATAT-TT
97285555 AATAAAATA-TT
1 AATAAAATATTT
*
97285566 ATTAAAATATCTT
1 AATAAAATAT-TT
97285579 AATAAAATA-TT
1 AATAAAATATTT
*
97285590 ATTAAAATA
1 AATAAAATA
97285599 GTAATAAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
11 29 0.58
13 21 0.42
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (12 bp):
AATAAAATATTT
Found at i:97285563 original size:24 final size:24
Alignment explanation
Indices: 97285531--97285598 Score: 127
Period size: 24 Copynumber: 2.8 Consensus size: 24
97285521 ACTAAATATG
*
97285531 AATAAAATATTAATAAAATATCTT
1 AATAAAATATTATTAAAATATCTT
97285555 AATAAAATATTATTAAAATATCTT
1 AATAAAATATTATTAAAATATCTT
97285579 AATAAAATATTATTAAAATA
1 AATAAAATATTATTAAAATA
97285599 GTAATAAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (24 bp):
AATAAAATATTATTAAAATATCTT
Found at i:97288092 original size:18 final size:18
Alignment explanation
Indices: 97288069--97288110 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
97288059 AGGTTGGTCG
97288069 ACACGGTCTCAGAGAGTT
1 ACACGGTCTCAGAGAGTT
97288087 ACACGGTCTCAGAGAGTT
1 ACACGGTCTCAGAGAGTT
97288105 ACACGG
1 ACACGG
97288111 CCGTGTGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.19
Consensus pattern (18 bp):
ACACGGTCTCAGAGAGTT
Found at i:97288251 original size:10 final size:10
Alignment explanation
Indices: 97288223--97288256 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
97288213 GTGACCCATG
*
97288223 TTTCTAAAAT
1 TTTCTAAATT
97288233 TTT-TAAATT
1 TTTCTAAATT
97288242 TTTCTAAATT
1 TTTCTAAATT
97288252 TTTCT
1 TTTCT
97288257 GTTTTGTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTCTAAATT
Found at i:97293370 original size:15 final size:17
Alignment explanation
Indices: 97293352--97293384 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
97293342 AATATTTAGG
97293352 AATT-AAAATT-TTAAT
1 AATTAAAAATTATTAAT
97293367 AATTAAAAATTATTAAT
1 AATTAAAAATTATTAAT
97293384 A
1 A
97293385 GTATGGGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 6 0.38
17 6 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTAAAAATTATTAAT
Found at i:97294070 original size:25 final size:25
Alignment explanation
Indices: 97294041--97294091 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
97294031 TCAATTATTG
97294041 TCATTGTTTCTTTGTTACGGTCCTC
1 TCATTGTTTCTTTGTTACGGTCCTC
*
97294066 TCATTGTTTCTTTGTTTCGGTCCTC
1 TCATTGTTTCTTTGTTACGGTCCTC
97294091 T
1 T
97294092 AAAATGAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.06, C:0.24, G:0.16, T:0.55
Consensus pattern (25 bp):
TCATTGTTTCTTTGTTACGGTCCTC
Found at i:97296223 original size:41 final size:39
Alignment explanation
Indices: 97296178--97296306 Score: 127
Period size: 40 Copynumber: 3.2 Consensus size: 39
97296168 AAATAGGCTT
*
97296178 TTAGCGGCG-TTTGGATAAAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGCTTT--AT-AAAAACGCCGCTAAAAATCAAGCA
* ** *
97296219 TTAGCGGCGCTTTTATAAAAACGCTGCTAAAGGTCGAGCA
1 TTAGCGGCGC-TTTATAAAAACGCCGCTAAAAATCAAGCA
* *
97296259 TTAGCGGCGCTTTTTGGAAAACGCCGCTAAAAAT-AAGCA
1 TTAGCGGCGCTTTAT-AAAAACGCCGCTAAAAATCAAGCA
*
97296298 TTACCGGCG
1 TTAGCGGCG
97296307 TTTTCCAAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
39 16 0.22
40 43 0.59
41 11 0.15
43 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.22
Consensus pattern (39 bp):
TTAGCGGCGCTTTATAAAAACGCCGCTAAAAATCAAGCA
Found at i:97296421 original size:41 final size:41
Alignment explanation
Indices: 97296364--97296565 Score: 325
Period size: 41 Copynumber: 5.0 Consensus size: 41
97296354 CTGAGTTTTG
* *
97296364 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
97296405 GGGCCTTTAGCGGCGTTTGTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
97296446 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
97296487 GGGCC-TTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTT
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
97296527 GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
97296566 CCGCTTTTGA
Statistics
Matches: 150, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 37 0.25
41 113 0.75
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:97296546 original size:81 final size:82
Alignment explanation
Indices: 97296364--97296565 Score: 334
Period size: 81 Copynumber: 2.5 Consensus size: 82
97296354 CTGAGTTTTG
* *
97296364 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCACTAATGCTCGGGCCTTTAGCGGCGTTTGTGAAG
1 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTGTGAAA
97296429 AAGCGCCGCTAATGCTC
66 AAGCGCCGCTAATGCTC
* *
97296446 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCGGGCC-TTAGCGGCGTTTTTTAAA
1 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTGTGAAA
*
97296510 AAGCGCCGCTAATGCTT
66 AAGCGCCGCTAATGCTC
* *
97296527 GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGC
1 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGC
97296566 CCGCTTTTGA
Statistics
Matches: 113, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
81 68 0.60
82 45 0.40
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (82 bp):
GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTGTGAAA
AAGCGCCGCTAATGCTC
Found at i:97297234 original size:21 final size:21
Alignment explanation
Indices: 97297197--97297241 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
97297187 TAAATAAGAT
* *
97297197 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAGAAGTTAGAGG
97297218 TTAGGGGTTA-AAGGTTAGAGG
1 TTAGGGGTTAGAA-GTTAGAGG
97297239 TTA
1 TTA
97297242 AGAGTTAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.24, C:0.00, G:0.42, T:0.33
Consensus pattern (21 bp):
TTAGGGGTTAGAAGTTAGAGG
Found at i:97301448 original size:43 final size:43
Alignment explanation
Indices: 97301388--97301478 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
97301378 CTTTGAGTTC
* * * *
97301388 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
*
97301430 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
97301473 ATTACC
1 ATTACC
97301479 TTGCATATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:97301874 original size:42 final size:43
Alignment explanation
Indices: 97301751--97301955 Score: 247
Period size: 42 Copynumber: 4.8 Consensus size: 43
97301741 ACGATATATT
* *
97301751 TTTAGCGGCGTTTGTGGGAAAAAGCGCCGCTAAAGCTCAAT-ATC
1 TTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTC-ATGGTC
* *
97301795 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
* * *
97301838 TTTAGCGACGTTTGTGGG-GAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
* * * *
97301880 TTTAGTGGCATTTGTAGGG--AGGCGCCGCTAAAGATCATGGTC
1 TTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGGTCATGGTC
*
97301922 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAG
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
97301956 TTAGCGACGC
Statistics
Matches: 140, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
41 3 0.02
42 67 0.48
43 52 0.37
44 18 0.13
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:97302786 original size:41 final size:41
Alignment explanation
Indices: 97302729--97302812 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
97302719 TTAAACTTTC
97302729 ATCATCTCATTTAAGTTGTTTATTTCAAAGATTTCAAAAAT
1 ATCATCTCATTTAAGTTGTTTATTTCAAAGATTTCAAAAAT
97302770 ATCATCTCATTTAAGTTGTTTATTTCAAAGATTTCAAAAAT
1 ATCATCTCATTTAAGTTGTTTATTTCAAAGATTTCAAAAAT
97302811 AT
1 AT
97302813 GTCTCTTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (41 bp):
ATCATCTCATTTAAGTTGTTTATTTCAAAGATTTCAAAAAT
Found at i:97303687 original size:25 final size:26
Alignment explanation
Indices: 97303634--97303687 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
97303624 GCCCAAGGGT
**
97303634 TTTTTTTTTTAAATTGAAAAATTATA
1 TTTTTTTTCAAAATTGAAAAATTATA
97303660 TTTTTTTTCAAAATT-AATAAATTA-A
1 TTTTTTTTCAAAATTGAA-AAATTATA
97303685 TTT
1 TTT
97303688 AGGCAATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (26 bp):
TTTTTTTTCAAAATTGAAAAATTATA
Found at i:97304100 original size:30 final size:30
Alignment explanation
Indices: 97304022--97304103 Score: 83
Period size: 31 Copynumber: 2.7 Consensus size: 30
97304012 AAATGTGTAC
* * *
97304022 AATTAAATCAAAATTAAAGTTTCATTTATAT
1 AATTAAA-CCAAATCAAAGTTTCATATATAT
* * *
97304053 ATTTAAACTACAATCAAAGTTTCATATGTAT
1 AATTAAACCA-AATCAAAGTTTCATATATAT
*
97304084 AATTATACCAAATCAAAGTT
1 AATTAAACCAAATCAAAGTT
97304104 GATATGTCAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 12 0.29
31 30 0.71
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.38
Consensus pattern (30 bp):
AATTAAACCAAATCAAAGTTTCATATATAT
Found at i:97304662 original size:19 final size:18
Alignment explanation
Indices: 97304630--97304678 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
97304620 ACCACATAAA
*
97304630 TAAAAAAAATAATTTTTTT
1 TAAAAAAAATAA-TTATTT
97304649 TAAAATAAAA-AATTATTT
1 TAAAA-AAAATAATTATTT
97304667 TAAAAAAAATAA
1 TAAAAAAAATAA
97304679 AGTTTAGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 7 0.26
20 4 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAAAAAATAATTATTT
Found at i:97312632 original size:3 final size:3
Alignment explanation
Indices: 97312624--97312665 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
97312614 TGTAAACGGC
97312624 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
97312666 AGGAAAGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:97313112 original size:94 final size:94
Alignment explanation
Indices: 97312988--97313173 Score: 363
Period size: 94 Copynumber: 2.0 Consensus size: 94
97312978 TTTTAAGTAT
*
97312988 ATCATTTACTTTATCAATTATTTCAACTTCATACTATACACCATTGTCAACCATAATTTACTTAT
1 ATCACTTACTTTATCAATTATTTCAACTTCATACTATACACCATTGTCAACCATAATTTACTTAT
97313053 TTCATCAATACTTTCACAACCTAGATGTC
66 TTCATCAATACTTTCACAACCTAGATGTC
97313082 ATCACTTACTTTATCAATTATTTCAACTTCATACTATACACCATTGTCAACCATAATTTACTTAT
1 ATCACTTACTTTATCAATTATTTCAACTTCATACTATACACCATTGTCAACCATAATTTACTTAT
97313147 TTCATCAATACTTTCACAACCTAGATG
66 TTCATCAATACTTTCACAACCTAGATG
97313174 ACTCTCATAA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 91 1.00
ACGTcount: A:0.33, C:0.24, G:0.03, T:0.40
Consensus pattern (94 bp):
ATCACTTACTTTATCAATTATTTCAACTTCATACTATACACCATTGTCAACCATAATTTACTTAT
TTCATCAATACTTTCACAACCTAGATGTC
Found at i:97313554 original size:18 final size:18
Alignment explanation
Indices: 97313531--97313594 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
97313521 GAACAATTAT
*
97313531 TTATTCAGTACTAGTCAG
1 TTATTCAGTACTAATCAG
* *
97313549 TTATTCGGTAAC-AATCAA
1 TTATTCAGT-ACTAATCAG
* *
97313567 TTATTCAATAATAATCAG
1 TTATTCAGTACTAATCAG
97313585 TTATTCAGTA
1 TTATTCAGTA
97313595 TCAGTCAATT
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
17 1 0.03
18 33 0.92
19 2 0.06
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (18 bp):
TTATTCAGTACTAATCAG
Found at i:97313563 original size:36 final size:36
Alignment explanation
Indices: 97313522--97313604 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
97313512 AATCAATCAG
* * * * *
97313522 AACAATTATTTATTCAGTACTAGTCAGTTATTCGGT
1 AACAATCAATTATTCAATAATAATCAGTTATTCGGT
*
97313558 AACAATCAATTATTCAATAATAATCAGTTATTCAGT
1 AACAATCAATTATTCAATAATAATCAGTTATTCGGT
* *
97313594 ATCAGTCAATT
1 AACAATCAATT
97313605 GATCGGTTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (36 bp):
AACAATCAATTATTCAATAATAATCAGTTATTCGGT
Found at i:97313930 original size:45 final size:45
Alignment explanation
Indices: 97313858--97314007 Score: 194
Period size: 45 Copynumber: 3.3 Consensus size: 45
97313848 ATCCGGAACA
* * *
97313858 GTAACAGTAACAGTATTCAACAAACAAAGTGCTGAATTGGTAACG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCGGTAACG
* * *
97313903 GTAAAAGTAACGGTATTCGACACACAAAGTG-TCGAATCGGTAATG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATCGGTAACG
* * *
97313948 ATAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGGTAACA
1 GTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCGGTAACG
*
97313993 GTAACGGTAACAGTA
1 GTAACAGTAACAGTA
97314008 ACAGCAGTCG
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
44 1 0.01
45 88 0.99
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCGGTAACG
Found at i:97314002 original size:12 final size:12
Alignment explanation
Indices: 97313985--97314009 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97313975 AGTGCCGAAT
97313985 CGGTAACAGTAA
1 CGGTAACAGTAA
97313997 CGGTAACAGTAA
1 CGGTAACAGTAA
97314009 C
1 C
97314010 AGCAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:97317314 original size:29 final size:29
Alignment explanation
Indices: 97317293--97317352 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
97317283 GGTTGGGATT
*
97317293 GGGTTTAGTTTGGGCTGATGGTTTAGTTG
1 GGGTTTAGTTTGGGCTGATGGTTGAGTTG
* *
97317322 GGGTTTAGTTTGGGTTGATGGTTTAGTTG
1 GGGTTTAGTTTGGGCTGATGGTTGAGTTG
97317351 GG
1 GG
97317353 CTTTGGGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.10, C:0.02, G:0.43, T:0.45
Consensus pattern (29 bp):
GGGTTTAGTTTGGGCTGATGGTTGAGTTG
Found at i:97317322 original size:17 final size:18
Alignment explanation
Indices: 97317294--97317354 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 18
97317284 GTTGGGATTG
97317294 GGTTTAGTTTGGGCTGAT
1 GGTTTAGTTTGGGCTGAT
97317312 GGTTTAG-TT--G--G--
1 GGTTTAGTTTGGGCTGAT
*
97317323 GGTTTAGTTTGGGTTGAT
1 GGTTTAGTTTGGGCTGAT
97317341 GGTTTAG-TTGGGCT
1 GGTTTAGTTTGGGCT
97317355 TTGGGTTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 15
0.69 0.02 0.29
Matches are distributed among these distances:
11 7 0.20
12 2 0.06
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 8 0.23
18 14 0.40
ACGTcount: A:0.10, C:0.03, G:0.41, T:0.46
Consensus pattern (18 bp):
GGTTTAGTTTGGGCTGAT
Found at i:97318590 original size:90 final size:89
Alignment explanation
Indices: 97318366--97318597 Score: 279
Period size: 90 Copynumber: 2.6 Consensus size: 89
97318356 TCCATCTTGC
*
97318366 GGCTCGCACATCTCCCTTGTACTCCATCTCTCGAGGTGGCGAGAAGCGATGGGGTGTTTCACCTC
1 GGCTCGCACATCTCCCTTGTACTCCATCT-TCGAGGTGGCGAGAAGCGATGGGCTGTTTCACCTC
* *
97318431 GTGAGGAGGGTTGGATTCCAGGTCA
65 GAGAGGAGGGTTGGATTCCAGATCA
* * * *
97318456 GGCTCGCACATCTCCCTCGTACTCCATCTTATGAGATGGCGAGAATCGATAGGGCT-TTTCACCT
1 GGCTCGCACATCTCCCTTGTACTCCATCTT-CGAGGTGGCGAGAAGCGAT-GGGCTGTTTCACCT
* *
97318520 CGAGAGGAGGGTTAGG-TTCTAGATTA
64 CGAGAGGAGGGTT-GGATTCCAGATCA
* * * * *
97318546 GGCTTGCACATTTCCCTTGTACTCCATCTTGCAAGGTGGTGAGAAGCAATGG
1 GGCTCGCACATCTCCCTTGTACTCCATCTT-CGAGGTGGCGAGAAGCGATGG
97318598 AACGTTCCAC
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
89 3 0.03
90 111 0.93
91 6 0.05
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (89 bp):
GGCTCGCACATCTCCCTTGTACTCCATCTTCGAGGTGGCGAGAAGCGATGGGCTGTTTCACCTCG
AGAGGAGGGTTGGATTCCAGATCA
Found at i:97327919 original size:25 final size:25
Alignment explanation
Indices: 97327851--97327919 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
97327841 TGGCTCCCAG
* * * *
97327851 GAGCTTTCTGATATTTAGCTCTCAT
1 GAGCTTCCCGATATTTGGCGCTCAT
* *
97327876 GAGCTTCCCGAT-TAATGGCGCTCTT
1 GAGCTTCCCGATAT-TTGGCGCTCAT
97327901 GAGCTTCCCGATATTTGGC
1 GAGCTTCCCGATATTTGGC
97327920 TGGCAAGAGC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
24 1 0.03
25 33 0.94
26 1 0.03
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (25 bp):
GAGCTTCCCGATATTTGGCGCTCAT
Found at i:97327971 original size:25 final size:25
Alignment explanation
Indices: 97327901--97327972 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
97327891 TGGCGCTCTT
* ** * *
97327901 GAGCTTCCCGATATTTGGCTGGCAA
1 GAGCTTCCCGTTACATGGCTCGAAA
97327926 GAGCTTCCCGTTACATGGCTCGAAA
1 GAGCTTCCCGTTACATGGCTCGAAA
*
97327951 GAGCTTCCCATTTACAT-GCTCG
1 GAGCTTCCC-GTTACATGGCTCG
97327973 TATGGGCATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 34 0.85
26 6 0.15
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.28
Consensus pattern (25 bp):
GAGCTTCCCGTTACATGGCTCGAAA
Found at i:97335288 original size:25 final size:26
Alignment explanation
Indices: 97335241--97335298 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
97335231 TATTTTTATC
97335241 TTTA-TTTATTTCTTTAAAGTACT-T
1 TTTATTTTATTTCTTTAAAGTACTAT
*
97335265 TTTATTTTATTTCCTTTCAA-TACTAT
1 TTTATTTTATTT-CTTTAAAGTACTAT
97335291 TTTATTTT
1 TTTATTTT
97335299 TAGGTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 11 0.37
26 15 0.50
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTATTTTATTTCTTTAAAGTACTAT
Found at i:97338573 original size:17 final size:17
Alignment explanation
Indices: 97338546--97338587 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
97338536 TTGGTTTATG
97338546 ATATG-AATATTATATA
1 ATATGAAATATTATATA
97338562 ATATGAAATATTATATA
1 ATATGAAATATTATATA
97338579 ATATGAAAT
1 ATATGAAAT
97338588 GTCTATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.40
Consensus pattern (17 bp):
ATATGAAATATTATATA
Found at i:97338932 original size:18 final size:18
Alignment explanation
Indices: 97338909--97338944 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
97338899 TAATATATAT
97338909 TAACCCAAGTACCCAACC
1 TAACCCAAGTACCCAACC
*
97338927 TAACCCAATTACCCAACC
1 TAACCCAAGTACCCAACC
97338945 CAATCAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.44, G:0.03, T:0.14
Consensus pattern (18 bp):
TAACCCAAGTACCCAACC
Found at i:97339026 original size:9 final size:9
Alignment explanation
Indices: 97339012--97339079 Score: 59
Period size: 9 Copynumber: 7.6 Consensus size: 9
97339002 TTTATACAAA
97339012 TAATTCGAT
1 TAATTCGAT
97339021 TAATTCTG-T
1 TAATTC-GAT
* **
97339030 TAATTTGGG
1 TAATTCGAT
*
97339039 TAATTCAAT
1 TAATTCGAT
97339048 TAATTC-AGT
1 TAATTCGA-T
97339057 TAATTCGAT
1 TAATTCGAT
*
97339066 TAATTCGGT
1 TAATTCGAT
97339075 TAATT
1 TAATT
97339080 TTATACTTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
8 2 0.04
9 44 0.92
10 2 0.04
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47
Consensus pattern (9 bp):
TAATTCGAT
Found at i:97339077 original size:27 final size:27
Alignment explanation
Indices: 97339012--97339079 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
97339002 TTTATACAAA
* * *
97339012 TAATTCGATTAATTCTGTTAATTTGGG
1 TAATTCGATTAATTCAGTTAATTCGAG
* *
97339039 TAATTCAATTAATTCAGTTAATTCGAT
1 TAATTCGATTAATTCAGTTAATTCGAG
*
97339066 TAATTCGGTTAATT
1 TAATTCGATTAATT
97339080 TTATACTTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47
Consensus pattern (27 bp):
TAATTCGATTAATTCAGTTAATTCGAG
Found at i:97340723 original size:10 final size:10
Alignment explanation
Indices: 97340708--97340732 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
97340698 AAGAATTAAG
97340708 TAAAATAAAA
1 TAAAATAAAA
97340718 TAAAATAAAA
1 TAAAATAAAA
97340728 TAAAA
1 TAAAA
97340733 GACTAAGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:97348895 original size:16 final size:16
Alignment explanation
Indices: 97348874--97348908 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
97348864 TATATGAGTG
*
97348874 AAAAAAAAATCTTTTT
1 AAAAAAAAATATTTTT
*
97348890 AAAAAAATATATTTTT
1 AAAAAAAAATATTTTT
97348906 AAA
1 AAA
97348909 TTATCTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAAAAAAATATTTTT
Found at i:97350224 original size:276 final size:276
Alignment explanation
Indices: 97349728--97350233 Score: 641
Period size: 276 Copynumber: 1.8 Consensus size: 276
97349718 GTGATAGTAT
* *
97349728 CTTAAATAATAGTTTAGATATACAACTGATGTGGGTAATAAAGTCTGCATAATAAAATTAAGATA
1 CTTAAATAATAGTTTAGATATACAACTGATGTGGGTAATAAAGTCTGAATAATAAAATTAAAATA
* * ** *
97349793 TATAAATAATTCAACATAAAACTTTGATTGAATGATAAATTTAAAGTTTTACGTATTGATGTGGT
66 CATAAATAATTCAAAATAAAACTTT-ATT-AATGATAAATTTAAAGTTTTACACATTGATGTGGC
* * * *
97349858 TTCAAATCTCACCATAAGTTTTTTTTTTTAGATAAAAAGACTAAATACTCTCGAATAATATAACT
129 TTCAAATCCCACCATAAGTTTTTTTTTTTAAATAAAAAGACTAAATACCCTCGAACAATATAACT
*
97349923 TATTTTAAACACGAAAGGATATTTTTATAATTTTACTAACCGAATAGGTCACGGTTGACTCAAAA
194 TATTTTAAACACGAAAAGATATTTTTATAATTTTACTAACCGAATAGGTCACGGTTGACTCAAAA
97349988 CACTAACTTAATTAGTGA
259 CACTAACTTAATTAGTGA
* *
97350006 CTTAAATAATAGTAAGTATAGATATACAATTGTTG-GAGGTAATAAAGTGC-GAATAATAAAATT
1 CTTAAATAATAGT---T-TAGATATACAACTGATGTG-GGTAATAAAGT-CTGAATAATAAAATT
* * * * *
97350069 AAAATGCATAAATAATTTTAAAATAAAAC-TT-TT-ATGGTAAATTTAAGGTTTTACACATTGGT
60 AAAATACATAAATAA-TTCAAAATAAAACTTTATTAATGATAAATTTAAAGTTTTACACATTGAT
* *
97350131 G-GGCTT-AAATCCCACCATAAG-TTTTTTTTTTAAATAAAAAGATTAAAATACCCTTGAACAAT
124 GTGGCTTCAAATCCCACCATAAGTTTTTTTTTTTAAATAAAAAGACT-AAATACCCTCGAACAAT
* * * *
97350193 ATAATTTATTTTAAATATGAAAAGATATTTTTGTAATTTTA
188 ATAACTTATTTTAAACACGAAAAGATATTTTTATAATTTTA
97350234 TTAATTGAGT
Statistics
Matches: 195, Mismatches: 25, Indels: 18
0.82 0.11 0.08
Matches are distributed among these distances:
275 21 0.11
276 64 0.33
277 4 0.02
278 38 0.19
280 2 0.01
281 2 0.01
282 52 0.27
283 12 0.06
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (276 bp):
CTTAAATAATAGTTTAGATATACAACTGATGTGGGTAATAAAGTCTGAATAATAAAATTAAAATA
CATAAATAATTCAAAATAAAACTTTATTAATGATAAATTTAAAGTTTTACACATTGATGTGGCTT
CAAATCCCACCATAAGTTTTTTTTTTTAAATAAAAAGACTAAATACCCTCGAACAATATAACTTA
TTTTAAACACGAAAAGATATTTTTATAATTTTACTAACCGAATAGGTCACGGTTGACTCAAAACA
CTAACTTAATTAGTGA
Found at i:97365958 original size:45 final size:47
Alignment explanation
Indices: 97365890--97365985 Score: 106
Period size: 45 Copynumber: 2.1 Consensus size: 47
97365880 TACTTGGCCA
**
97365890 AGTATAAATAATAAACAACAAATAATTTATAATTTAGTTAAA-A-TT
1 AGTATAAATAATAAACAACAAATAATAGATAATTTAGTTAAATATTT
** * * * *
97365935 AGTATAAATAATTTATAATAAATACTAGATAATTTATTTAAATATTT
1 AGTATAAATAATAAACAACAAATAATAGATAATTTAGTTAAATATTT
97365982 AGTA
1 AGTA
97365986 GGTCAAAATG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
45 34 0.83
46 1 0.02
47 6 0.15
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.40
Consensus pattern (47 bp):
AGTATAAATAATAAACAACAAATAATAGATAATTTAGTTAAATATTT
Found at i:97367168 original size:50 final size:50
Alignment explanation
Indices: 97367114--97367309 Score: 223
Period size: 50 Copynumber: 3.9 Consensus size: 50
97367104 GGTGGAAGTA
* *
97367114 AGTGGCAGTATATTTGCATATCAGTGGTGGCTTGTCCACAAAGTGTTATC
1 AGTGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAGTGTTATC
* * * * *
97367164 AGTGGTAGTATATTTGCATATTAGTGGTGGCTTGGCCATAAAGTATTATC
1 AGTGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAGTGTTATC
** * *
97367214 AGTGATAGTATATCTGCATATTAGTGGTGGATTGTCCACAAAGTCTTATC
1 AGTGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAGTGTTATC
* * * * * * *
97367264 AGTGGCTGTTTATCTACAAATAAATGGTGACTTGTCCACAAA-TGTT
1 AGTGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAGTGTT
97367310 GTATTGGATG
Statistics
Matches: 124, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
49 3 0.02
50 121 0.98
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (50 bp):
AGTGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAGTGTTATC
Found at i:97368673 original size:41 final size:40
Alignment explanation
Indices: 97368601--97368715 Score: 122
Period size: 41 Copynumber: 2.8 Consensus size: 40
97368591 TCTACTACAT
* ** * * *
97368601 GGCCTACCACACGATCATGTGACCCGTATGGTTTGCCAGAC
1 GGCCTA-CACACGATCGTGTGACCCACATGGTCTGACACAC
*
97368642 GGCCTACTACACGATCGTATGACCCACATGGTCTGACACAC
1 GGCCTAC-ACACGATCGTGTGACCCACATGGTCTGACACAC
* *
97368683 GGCCTGGCACATGATCGTGTGACCCACATGGTC
1 GGCCT-ACACACGATCGTGTGACCCACATGGTC
97368716 GCGTGACCCA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.02
41 60 0.97
42 1 0.02
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (40 bp):
GGCCTACACACGATCGTGTGACCCACATGGTCTGACACAC
Found at i:97368712 original size:17 final size:17
Alignment explanation
Indices: 97368690--97368725 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
97368680 CACGGCCTGG
*
97368690 CACATGATCGTGTGACC
1 CACATGATCGCGTGACC
*
97368707 CACATGGTCGCGTGACC
1 CACATGATCGCGTGACC
97368724 CA
1 CA
97368726 GACGACCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.33, G:0.25, T:0.19
Consensus pattern (17 bp):
CACATGATCGCGTGACC
Found at i:97372007 original size:31 final size:31
Alignment explanation
Indices: 97371964--97372033 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
97371954 TCAGTCTCGA
97371964 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
97371994 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
97372025 CATATCACT
1 CATATCACT
97372034 AGTCGAAGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
30 5 0.13
31 34 0.87
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:97372043 original size:30 final size:31
Alignment explanation
Indices: 97371964--97372044 Score: 121
Period size: 31 Copynumber: 2.7 Consensus size: 31
97371954 TCAGTCTCGA
*
97371964 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGAGCCGAAGCCTTTTCATAAAT
*
97371994 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGAGCCGAAGCCTTTTCATAAAT
*
97372025 CATATCACT-AGTCGAAGCCT
1 CATATCACTGAGCCGAAGCCT
97372045 ACTGTAAGCG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 14 0.29
31 34 0.71
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (31 bp):
CATATCACTGAGCCGAAGCCTTTTCATAAAT
Found at i:97372296 original size:25 final size:25
Alignment explanation
Indices: 97372264--97372333 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
97372254 CTCTTTTAAT
97372264 AACTGGGGCAAAACCCTTTTTGATA
1 AACTGGGGCAAAACCCTTTTTGATA
* *
97372289 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAACCCTTTTTGATA
*
97372314 AACTGGGGCATAACCCTTTT
1 AACTGGGGCAAAACCCTTTT
97372334 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAACCCTTTTTGATA
Found at i:97373197 original size:27 final size:27
Alignment explanation
Indices: 97373135--97373212 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
97373125 GTGCATATTC
97373135 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
97373162 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
97373189 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
97373213 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:97373384 original size:54 final size:54
Alignment explanation
Indices: 97373238--97373451 Score: 159
Period size: 54 Copynumber: 4.0 Consensus size: 54
97373228 TACAAGGGTG
* * * * *
97373238 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGT-AAGCA-ATGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATCAGA-GGTA
* * ** **
97373291 TTTCT-ATAATTTTTAGAAAGTTAAGGGTATTTCTGTAATTTTATAAATCAGAGGTA
1 TTT-TGGTAA-TTTTACAAA-CCAAGGGTATTTCAATAATTTTATAAATCAGAGGTA
*** * * *
97373347 TTTTGGTAATTTTACAAATTGAGGGTATTTCAATAATTTCACAAA-CTAGTGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATC-AGAGGTA
** * *
97373401 TTTTGGTAATTTTGTAAACCAAGGGTATTTTAATAATTTTGTAAATC-GAGG
1 TTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATCAGAGG
97373452 GTAAAACGGT
Statistics
Matches: 126, Mismatches: 27, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
53 10 0.08
54 71 0.56
55 30 0.24
56 14 0.11
57 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATCAGAGGTA
Found at i:97373452 original size:27 final size:27
Alignment explanation
Indices: 97373326--97373454 Score: 100
Period size: 27 Copynumber: 4.8 Consensus size: 27
97373316 GGTATTTCTG
**
97373326 TAATTTTATAAATC-AGAGGTATTTTGG
1 TAATTTTATAAATCGAG-GGTATTTTAA
* * *
97373353 TAATTTTACAAATTGAGGGTATTTCAA
1 TAATTTTATAAATCGAGGGTATTTTAA
* * * **
97373380 TAATTTCACAAA-CTAGTGGTATTTTGG
1 TAATTTTATAAATCGAG-GGTATTTTAA
* * *
97373407 TAATTTTGTAAACCAAGGGTATTTTAA
1 TAATTTTATAAATCGAGGGTATTTTAA
*
97373434 TAATTTTGTAAATCGAGGGTA
1 TAATTTTATAAATCGAGGGTA
97373455 AAACGGTAAT
Statistics
Matches: 80, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.03
27 73 0.91
28 5 0.06
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTATTTTAA
Found at i:97373597 original size:81 final size:81
Alignment explanation
Indices: 97373405--97373614 Score: 267
Period size: 81 Copynumber: 2.6 Consensus size: 81
97373395 GTGGTATTTT
* * * ** * * *
97373405 GGTAATTTTGTAAACCAAGGGTATTTTAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTTTGTAAATCGAGGGTAATTTGGTAATTTTATAAATTGAGGATAAAACGGTAATTCTGT
*
97373470 AAATTGAGGGTAAAAC
66 AAATTGAGGATAAAAC
* * ** *
97373486 GGTAATTTTTTAAATTGAGGGTAAAATGGTAATTCTATAAATTGAGGATAAAACGGTAATTCTGT
1 GGTAATTTTGTAAATCGAGGGTAATTTGGTAATTTTATAAATTGAGGATAAAACGGTAATTCTGT
97373551 AAATTGAGGATAAAAC
66 AAATTGAGGATAAAAC
* * *
97373567 GGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGA
1 GGTAATTTTGTAAATCGAGGGTAATTTGGTAATTTTATAAATTGAGGA
97373615 ACATTTTAGT
Statistics
Matches: 107, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTAATTTGGTAATTTTATAAATTGAGGATAAAACGGTAATTCTGT
AAATTGAGGATAAAAC
Found at i:97373600 original size:27 final size:27
Alignment explanation
Indices: 97373434--97373589 Score: 231
Period size: 27 Copynumber: 5.8 Consensus size: 27
97373424 GGTATTTTAA
* *
97373434 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATTGAGGGTAAAACGG
97373461 TAATTCTGTAAATTGAGGGTAAAACGG
1 TAATTCTGTAAATTGAGGGTAAAACGG
* * *
97373488 TAATTTTTTAAATTGAGGGTAAAATGG
1 TAATTCTGTAAATTGAGGGTAAAACGG
* *
97373515 TAATTCTATAAATTGAGGATAAAACGG
1 TAATTCTGTAAATTGAGGGTAAAACGG
*
97373542 TAATTCTGTAAATTGAGGATAAAACGG
1 TAATTCTGTAAATTGAGGGTAAAACGG
*
97373569 TAATTCTGTAAATCGAGGGTA
1 TAATTCTGTAAATTGAGGGTA
97373590 CTTTGGTAAT
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.32
Consensus pattern (27 bp):
TAATTCTGTAAATTGAGGGTAAAACGG
Found at i:97377821 original size:29 final size:30
Alignment explanation
Indices: 97377779--97377837 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
97377769 TATGGTTTAA
*
97377779 TGTGCAATTGTATATATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
97377808 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
97377838 GATCCAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:97383013 original size:11 final size:11
Alignment explanation
Indices: 97382999--97383024 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97382989 TATATTTATA
97382999 TTATTAAAATT
1 TTATTAAAATT
97383010 TTATTAAAATT
1 TTATTAAAATT
97383021 TTAT
1 TTAT
97383025 AAATACAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
TTATTAAAATT
Found at i:97385169 original size:16 final size:17
Alignment explanation
Indices: 97385136--97385170 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
97385126 ATAAAATTAT
*
97385136 TAAATAATTAATACAAA
1 TAAATAATTAACACAAA
97385153 TAAATAA-TAACACAAA
1 TAAATAATTAACACAAA
97385169 TA
1 TA
97385171 TTCATTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAATAATTAACACAAA
Found at i:97385626 original size:14 final size:14
Alignment explanation
Indices: 97385607--97385633 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97385597 TCATGATAAA
97385607 TAAAATACAAGTGG
1 TAAAATACAAGTGG
97385621 TAAAATACAAGTG
1 TAAAATACAAGTG
97385634 TGCAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
TAAAATACAAGTGG
Found at i:97388252 original size:15 final size:15
Alignment explanation
Indices: 97388229--97388278 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
97388219 TTTATTAAAT
97388229 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* *
97388244 TTATTTTGATTGAAT
1 TTATATTGATTGAAA
97388259 TTATATTGATTG-AA
1 TTATATTGATTGAAA
97388273 TTATAT
1 TTATAT
97388279 AATATATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 7 0.23
15 24 0.77
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:97388682 original size:23 final size:23
Alignment explanation
Indices: 97388652--97388733 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 23
97388642 GCTTTATCGA
* *
97388652 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
97388675 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
97388696 TCAGGCACCTCATGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
97388718 T-AGGCACTTTATGTGT
1 TCAGGCACCTCATGTGT
97388734 TATTGAACAA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
21 32 0.63
22 1 0.02
23 18 0.35
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:97394111 original size:15 final size:15
Alignment explanation
Indices: 97394088--97394137 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
97394078 TTTATTAAAT
97394088 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* *
97394103 TTATTTTGATTGAAT
1 TTATATTGATTGAAA
97394118 TTATATTGATTG-AA
1 TTATATTGATTGAAA
97394132 TTATAT
1 TTATAT
97394138 AATATATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 7 0.23
15 24 0.77
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:97394540 original size:23 final size:22
Alignment explanation
Indices: 97394512--97394596 Score: 93
Period size: 21 Copynumber: 3.9 Consensus size: 22
97394502 TTTATCGATC
* *
97394512 AGGCACTTTATGTGTCGTATTT
1 AGGCACCTCATGTGTCGTATTT
*
97394534 CAGGCACCTCGTGTGTCGTA-TT
1 -AGGCACCTCATGTGTCGTATTT
*
97394556 AGGCACCTCGTGTGTCGT-TTT
1 AGGCACCTCATGTGTCGTATTT
* *
97394577 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCATGTGTCGTAT
97394597 ATTGATCAGG
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
21 35 0.65
22 3 0.06
23 16 0.30
ACGTcount: A:0.15, C:0.20, G:0.26, T:0.39
Consensus pattern (22 bp):
AGGCACCTCATGTGTCGTATTT
Found at i:97394559 original size:21 final size:21
Alignment explanation
Indices: 97394522--97394596 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
97394512 AGGCACTTTA
97394522 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TT-AGGCACCTCG
97394545 TGTGTCGTATTAGGCACCTCG
1 TGTGTCGTATTAGGCACCTCG
* * **
97394566 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATTAGGCACCTCG
97394587 TGTGTCGTAT
1 TGTGTCGTAT
97394597 ATTGATCAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 36 0.77
22 2 0.04
23 9 0.19
ACGTcount: A:0.13, C:0.20, G:0.27, T:0.40
Consensus pattern (21 bp):
TGTGTCGTATTAGGCACCTCG
Found at i:97417197 original size:57 final size:56
Alignment explanation
Indices: 97417053--97417259 Score: 227
Period size: 57 Copynumber: 3.6 Consensus size: 56
97417043 ATTAACCTCA
* * *
97417053 TTACAGAAAGGATTTAGCCTAGACGGGTAATCCTGATATAAGCTCTCTCGAGCATATG
1 TTACAGAAAGGATTTAGCC-AGACGGGTAATCCTGAT-TAAGTTCTTTAGAGCATATG
* ** *
97417111 TTATAGATTGGATTTAGCTCAGACGGGTAATCCAGATTAAGTTCTTTAGAGCATATG
1 TTACAGAAAGGATTTAGC-CAGACGGGTAATCCTGATTAAGTTCTTTAGAGCATATG
* *
97417168 TTACAAAAAGGATTTAGCCAGGACTGGTAATCCTGATTAAGTTC-TTATGAGCATATG
1 TTACAGAAAGGATTTAGCCA-GACGGGTAATCCTGATTAAGTTCTTTA-GAGCATATG
** * * *
97417225 TTGGAGACAGGATTTAGCCTGGACTGGTAATCCTG
1 TTACAGAAAGGATTTAGCC-AGACGGGTAATCCTG
97417260 TTATATGATA
Statistics
Matches: 127, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
56 5 0.04
57 90 0.71
58 31 0.24
59 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (56 bp):
TTACAGAAAGGATTTAGCCAGACGGGTAATCCTGATTAAGTTCTTTAGAGCATATG
Found at i:97422383 original size:49 final size:49
Alignment explanation
Indices: 97422289--97422405 Score: 123
Period size: 50 Copynumber: 2.4 Consensus size: 49
97422279 TATTGTTTTG
* * * * *
97422289 ATTTTTTAAAATATATATTGAATTATTTATATTTTATCTAATTATATAT
1 ATTTTTTAAATTTTATTTTGAATTATTTAGATTTTATCTAATTATACAT
*
97422338 AATTTTTTAAATTTTATTTTGAA-TATTTAGATTTT-TTTAATTTATACAT
1 -ATTTTTTAAATTTTATTTTGAATTATTTAGATTTTATCTAA-TTATACAT
*
97422387 A-TCTTTAACATTTTATTTT
1 ATTTTTTAA-ATTTTATTTT
97422406 TAAAAAAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
47 6 0.10
48 15 0.26
49 18 0.31
50 19 0.33
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (49 bp):
ATTTTTTAAATTTTATTTTGAATTATTTAGATTTTATCTAATTATACAT
Found at i:97432176 original size:21 final size:21
Alignment explanation
Indices: 97432118--97432178 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 21
97432108 AGGCACTTTA
97432118 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGT-TTT-AGGCACCTCG
* * *
97432141 TGTGTCATATCAGGCACCTCG
1 TGTGTCGTTTTAGGCACCTCG
97432162 TGTGTCGTTTTAGGCAC
1 TGTGTCGTTTTAGGCAC
97432179 TTTATGTGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 24 0.75
22 1 0.03
23 7 0.22
ACGTcount: A:0.15, C:0.25, G:0.26, T:0.34
Consensus pattern (21 bp):
TGTGTCGTTTTAGGCACCTCG
Found at i:97432186 original size:21 final size:21
Alignment explanation
Indices: 97432108--97432190 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
97432098 TTTATCGATC
* *
97432108 AGGCACTTTATGTGTCGTATTT
1 AGGCACCTCATGTGTCGT-TTT
* * * *
97432130 CAGGCACCTCGTGTGTCATATC
1 -AGGCACCTCATGTGTCGTTTT
*
97432152 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCATGTGTCGTTTT
* *
97432173 AGGCACTTTATGTGTCGT
1 AGGCACCTCATGTGTCGT
97432191 ATACTGATCA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
21 33 0.69
22 1 0.02
23 14 0.29
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.37
Consensus pattern (21 bp):
AGGCACCTCATGTGTCGTTTT
Found at i:97433766 original size:10 final size:10
Alignment explanation
Indices: 97433751--97433789 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
97433741 CCTGCAGTTG
97433751 AAATTTTTCT
1 AAATTTTTCT
97433761 AAATTTTTCCT
1 AAATTTTT-CT
97433772 AAATTTTTC-
1 AAATTTTTCT
97433781 AAATGTTTT
1 AAAT-TTTT
97433790 TGATTTAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 4 0.15
10 13 0.48
11 10 0.37
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (10 bp):
AAATTTTTCT
Found at i:97433773 original size:11 final size:11
Alignment explanation
Indices: 97433751--97433780 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
97433741 CCTGCAGTTG
97433751 AAATTTTT-CT
1 AAATTTTTCCT
97433761 AAATTTTTCCT
1 AAATTTTTCCT
97433772 AAATTTTTC
1 AAATTTTTC
97433781 AAATGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (11 bp):
AAATTTTTCCT
Found at i:97439324 original size:30 final size:30
Alignment explanation
Indices: 97439290--97439350 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97439280 ACGGGTATGA
* *
97439290 GTCACACGCGGGCAACACACATAGGCATGT
1 GTCACACACAGGCAACACACATAGGCATGT
* * *
97439320 GTCACATACAGGCAACACACATGGGCGTGT
1 GTCACACACAGGCAACACACATAGGCATGT
97439350 G
1 G
97439351 ACCTAAGTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.15
Consensus pattern (30 bp):
GTCACACACAGGCAACACACATAGGCATGT
Found at i:97439451 original size:103 final size:103
Alignment explanation
Indices: 97439284--97439471 Score: 313
Period size: 103 Copynumber: 1.8 Consensus size: 103
97439274 GGCCACACGG
* * * *
97439284 GTATGAGTCACACGCGGGCAACACACATAGGCATGTGTCACATACAGGCAACACACATGGGCGTG
1 GTATGAGCCACACGCAGGCAACACACATAGGCATGTGTCACACACAGGCAACACACATGAGCGTG
*
97439349 TGACCTAAGTCAGAGAGTTACACAGTCTGGCCACATAA
66 TGACCCAAGTCAGAGAGTTACACAGTCTGGCCACATAA
* *
97439387 GTATGAGCCACACGCAGGCAACACACATGGGCATGTGTCACACACGGGCAACACACATGAGCGTG
1 GTATGAGCCACACGCAGGCAACACACATAGGCATGTGTCACACACAGGCAACACACATGAGCGTG
97439452 TGACCCAAGTCAGAGAGTTA
66 TGACCCAAGTCAGAGAGTTA
97439472 TAAGCTTGGC
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 78 1.00
ACGTcount: A:0.32, C:0.26, G:0.26, T:0.16
Consensus pattern (103 bp):
GTATGAGCCACACGCAGGCAACACACATAGGCATGTGTCACACACAGGCAACACACATGAGCGTG
TGACCCAAGTCAGAGAGTTACACAGTCTGGCCACATAA
Found at i:97441274 original size:12 final size:14
Alignment explanation
Indices: 97441257--97441289 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
97441247 TCCAATTCTC
97441257 ATAAAATTATT-A-
1 ATAAAATTATTGAT
97441269 ATAAAATTATTGAT
1 ATAAAATTATTGAT
97441283 ATAAAAT
1 ATAAAAT
97441290 CATTTTATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 1 0.05
14 7 0.37
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (14 bp):
ATAAAATTATTGAT
Found at i:97441417 original size:31 final size:29
Alignment explanation
Indices: 97441382--97441483 Score: 89
Period size: 31 Copynumber: 3.3 Consensus size: 29
97441372 TGTATGATTG
97441382 AATCAAAATTAAAATTTCATATGTACATTTA
1 AATCAAAATTAAAATTTCATAT-TACA-TTA
* *
97441413 AATCACAATAAAAATTAT-ATAATTACATTA
1 AATCAAAATTAAAATT-TCAT-ATTACATTA
* * * *
97441443 AATTAAAATTAATATATCAAATTACACATTA
1 AATCAAAATTAAAATTTCATATT--ACATTA
97441474 AATCAAAATT
1 AATCAAAATT
97441484 TGTATATAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
29 4 0.07
30 15 0.26
31 35 0.61
32 3 0.05
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.35
Consensus pattern (29 bp):
AATCAAAATTAAAATTTCATATTACATTA
Found at i:97443301 original size:11 final size:11
Alignment explanation
Indices: 97443285--97443309 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97443275 CCCTATTCAT
97443285 AGAAAAAAAAA
1 AGAAAAAAAAA
97443296 AGAAAAAAAAA
1 AGAAAAAAAAA
97443307 AGA
1 AGA
97443310 GGGTAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:97447367 original size:2 final size:2
Alignment explanation
Indices: 97447360--97447387 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
97447350 TGGAAACTGT
97447360 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
97447388 AGGGTTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:97449030 original size:18 final size:18
Alignment explanation
Indices: 97448991--97449034 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
97448981 TATTTTAAAT
*
97448991 AATTGAAATTTAAATGTC
1 AATTCAAATTTAAATGTC
*
97449009 AATTCAAATTTGAAT-TC
1 AATTCAAATTTAAATGTC
97449026 AAATTCAAA
1 -AATTCAAA
97449035 GATAATTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (18 bp):
AATTCAAATTTAAATGTC
Found at i:97466521 original size:20 final size:20
Alignment explanation
Indices: 97466483--97466522 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
97466473 CTATTTTTAC
**
97466483 ATATATTAATAAATTTATAT
1 ATATATTAATAAAACTATAT
97466503 ATATATTAATAAAACTATAT
1 ATATATTAATAAAACTATAT
97466523 TTTAAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATATTAATAAAACTATAT
Found at i:97467830 original size:132 final size:132
Alignment explanation
Indices: 97467593--97467857 Score: 530
Period size: 132 Copynumber: 2.0 Consensus size: 132
97467583 ACATAGTTAC
97467593 ACGTCTAACAAGGGTGATTACTGATTTCATTTGTTTCAAAAGTGATTGTCCGATATGGTGCAAGA
1 ACGTCTAACAAGGGTGATTACTGATTTCATTTGTTTCAAAAGTGATTGTCCGATATGGTGCAAGA
97467658 CGTCAATCTCAGAGTGACAACAATCAAGACTAGACAATCATGTCTACTTTCAAACTTAAATACTA
66 CGTCAATCTCAGAGTGACAACAATCAAGACTAGACAATCATGTCTACTTTCAAACTTAAATACTA
97467723 AT
131 AT
97467725 ACGTCTAACAAGGGTGATTACTGATTTCATTTGTTTCAAAAGTGATTGTCCGATATGGTGCAAGA
1 ACGTCTAACAAGGGTGATTACTGATTTCATTTGTTTCAAAAGTGATTGTCCGATATGGTGCAAGA
97467790 CGTCAATCTCAGAGTGACAACAATCAAGACTAGACAATCATGTCTACTTTCAAACTTAAATACTA
66 CGTCAATCTCAGAGTGACAACAATCAAGACTAGACAATCATGTCTACTTTCAAACTTAAATACTA
97467855 AT
131 AT
97467857 A
1 A
97467858 TCAAACTTAA
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 133 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (132 bp):
ACGTCTAACAAGGGTGATTACTGATTTCATTTGTTTCAAAAGTGATTGTCCGATATGGTGCAAGA
CGTCAATCTCAGAGTGACAACAATCAAGACTAGACAATCATGTCTACTTTCAAACTTAAATACTA
AT
Found at i:97468222 original size:16 final size:16
Alignment explanation
Indices: 97468201--97468232 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97468191 AAATTTGTAT
97468201 GAAATTCAATGAAAAA
1 GAAATTCAATGAAAAA
97468217 GAAATTCAATGAAAAA
1 GAAATTCAATGAAAAA
97468233 TATTATGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (16 bp):
GAAATTCAATGAAAAA
Found at i:97482593 original size:21 final size:21
Alignment explanation
Indices: 97482563--97482605 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
97482553 TTTGTTAAAG
97482563 TTATAACTTTTTTAATAACTTT
1 TTATAACTTTTTTAATAA-TTT
*
97482585 TTAT-ACTTTTTTTATAATTT
1 TTATAACTTTTTTAATAATTT
97482605 T
1 T
97482606 AGTACAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATAACTTTTTTAATAATTT
Found at i:97484973 original size:15 final size:15
Alignment explanation
Indices: 97484928--97484973 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
97484918 TTAATTTCCC
**
97484928 TCCTTTTCACTTTTT
1 TCCTTTTCTTTTTTT
*
97484943 TCCTTTTCTTATTTT
1 TCCTTTTCTTTTTTT
*
97484958 TCTTTTTCTTTTTTT
1 TCCTTTTCTTTTTTT
97484973 T
1 T
97484974 TGTAGGTGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (15 bp):
TCCTTTTCTTTTTTT
Found at i:97489854 original size:69 final size:69
Alignment explanation
Indices: 97489775--97489937 Score: 211
Period size: 69 Copynumber: 2.4 Consensus size: 69
97489765 AAATGTTTGG
* * * *
97489775 AGGCTCTGGTGTTTAACCTGCGAG-TATTAAAATGACAACTGGGAGTTTTAGCTCATGCTAACTT
1 AGGCTGTGGTGTTTAACCTGCGAGCT-TTAAAATGACAACTGGGAGCTTTAGCTCACGCTAACTG
97489839 TTTAA
65 TTTAA
* * * *
97489844 AGGCTGTGGTGTTTAACCTGCGAGCTTTAAGATGACAGCTTGGAGCTTTAGCTCGCGCTAACTGT
1 AGGCTGTGGTGTTTAACCTGCGAGCTTTAAAATGACAACTGGGAGCTTTAGCTCACGCTAACTGT
*
97489909 TTAG
66 TTAA
* *
97489913 AGGTTGCGGTGTTTAACCTGCGAGC
1 AGGCTGTGGTGTTTAACCTGCGAGC
97489938 CTTAGTTTGA
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
69 81 0.99
70 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.33
Consensus pattern (69 bp):
AGGCTGTGGTGTTTAACCTGCGAGCTTTAAAATGACAACTGGGAGCTTTAGCTCACGCTAACTGT
TTAA
Found at i:97489934 original size:138 final size:138
Alignment explanation
Indices: 97489686--97489936 Score: 317
Period size: 138 Copynumber: 1.8 Consensus size: 138
97489676 TAAAATTGCG
* * * *
97489686 AGCTCAAGCTAACTATTTAGAGGATGCAGTGTCTAACCTGTGAGCCTTAATATGACGGTTGGGAG
1 AGCTCAAGCTAACTATTTAAAGGATGCAGTGTCTAACCTGCGAGCCTTAAGATGACGCTTGGGAG
* *
97489751 CTTTACCTTGCACTAAATGTTTGGAGGCTCTGGTGTTTAACCTGCGAGTATTAAAATGACAACTG
66 CTTTACCTCGCACTAAATGTTTAGAGGCTCTGGTGTTTAACCTGCGAGTATTAAAATGACAACTG
97489816 GGAGTTTT
131 GGAGTTTT
* * * ** * *
97489824 AGCTCATGCTAACTTTTTAAAGGCTGTGGTGTTTAACCTGCGAGCTTTAAGATGACAGCTT-GGA
1 AGCTCAAGCTAACTATTTAAAGGATGCAGTGTCTAACCTGCGAGCCTTAAGATGAC-GCTTGGGA
* * * *
97489888 GCTTTAGCTCGCGCTAACTGTTTAGAGGTTGC-GGTGTTTAACCTGCGAG
65 GCTTTACCTCGCACTAAATGTTTAGAGGCT-CTGGTGTTTAACCTGCGAG
97489937 CCTTAGTTTG
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
138 90 0.96
139 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (138 bp):
AGCTCAAGCTAACTATTTAAAGGATGCAGTGTCTAACCTGCGAGCCTTAAGATGACGCTTGGGAG
CTTTACCTCGCACTAAATGTTTAGAGGCTCTGGTGTTTAACCTGCGAGTATTAAAATGACAACTG
GGAGTTTT
Found at i:97489958 original size:69 final size:70
Alignment explanation
Indices: 97489693--97490290 Score: 377
Period size: 70 Copynumber: 8.6 Consensus size: 70
97489683 GCGAGCTCAA
* * * * * * *
97489693 GCTAACTATTTAGAGGATGCAGTGTCTAACCTGTGAGCCTTAATATGACGGTTGGGAGCTTT-AC
1 GCTAACTATTTAGAGGCTGCGGTGTTTAACCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGAG
*
97489757 CTTGC
66 CTCGC
* * * * ** ** ** *
97489762 ACTAAATGTTTGGAGGCT-CTGGTGTTTAACCTGCGAGTATTAAAATGACAACTGGGAG-TTTTA
1 GCTAACTATTTAGAGGCTGC-GGTGTTTAACCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGA
**
97489825 GCTCAT
65 GCTCGC
* * * *
97489831 GCTAACTTTTTAAAGGCTGTGGTGTTTAACCTGCGAGCTTTAAG-ATGACAGCTT-GGAGCTTT-
1 GCTAACTATTTAGAGGCTGCGGTGTTTAACCTGCGAGCCTT-AGTATGACAG-TTGGGAGCTTTG
97489893 AGCTCGC
64 AGCTCGC
* * * * * *
97489900 GCTAACTGTTTAGAGGTTGCGGTGTTTAACCTGCGAGCCTTAGTTTGATAGTTGGGAGCTTTAAA
1 GCTAACTATTTAGAGGCTGCGGTGTTTAACCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGAG
**
97489965 CTCTT
66 CTCGC
* * ** * * * * * ** *
97489970 ACTAACTATTTA-AAGCTTATGGT-TTGATCTTGCAAACCTTAGTATGACAGTTGAAAGCTTTAA
1 GCTAACTATTTAGAGGC-TGCGGTGTTTAACCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGA
* ***
97490033 ACTATT
65 GCTCGC
* * * * * *
97490039 GCTAACTATTTGGAGGCTACGGTATTGAACCTGCGAACCTTAGTATGACAGTTGGGAGCTTTGAA
1 GCTAACTATTTAGAGGCTGCGGTGTTTAACCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGAG
*
97490104 CTCTC
66 CTCGC
* ** * * *
97490109 GCTAACTATTTGGAGGCTGTAGTATTGAACCTGCGAGCCTTAGTATGATAGTTGGGAGCTTTGAG
1 GCTAACTATTTAGAGGCTGCGGTGTTTAACCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGAG
**
97490174 CTCAT
66 CTCGC
* * * * * ** * *
97490179 GCTAACTATTCAAAGGCTACTGTATTGCACCTGCGAGCCTTAGTATGACAGGTGAGAGCTTTGAG
1 GCTAACTATTTAGAGGCTGCGGTGTTTAACCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGAG
97490244 CTCGC
66 CTCGC
* * * * * *
97490249 GCTAATTGTTTGGAGGTTGTGGT-ATTACACCTGCGAGCCTTA
1 GCTAACTATTTAGAGGCTGCGGTGTTTA-ACCTGCGAGCCTTA
97490291 ATGTGACAAG
Statistics
Matches: 415, Mismatches: 101, Indels: 25
0.77 0.19 0.05
Matches are distributed among these distances:
68 8 0.02
69 195 0.47
70 212 0.51
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (70 bp):
GCTAACTATTTAGAGGCTGCGGTGTTTAACCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGAG
CTCGC
Found at i:97492518 original size:23 final size:23
Alignment explanation
Indices: 97492492--97492541 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
97492482 TTTAAATTTT
* *
97492492 GAGTCAA-TCGAATTGAGTTATTC
1 GAGTCAACTCGAA-TAAGTAATTC
97492515 GAGTCAACTCGAATAAGTAATTC
1 GAGTCAACTCGAATAAGTAATTC
97492538 GAGT
1 GAGT
97492542 TTTGAGTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (23 bp):
GAGTCAACTCGAATAAGTAATTC
Found at i:97492721 original size:20 final size:19
Alignment explanation
Indices: 97492678--97492725 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
97492668 ATTACAAAAT
*
97492678 AATTTCAAAATAATTTTTA
1 AATTTCAAAATAATTTTAA
97492697 AATTTCAAAAT-ATTTATAAA
1 AATTTCAAAATAATTT-T-AA
97492717 AATTTCAAA
1 AATTTCAAA
97492726 TTGTATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 12 0.46
20 10 0.38
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTTCAAAATAATTTTAA
Found at i:97492759 original size:19 final size:20
Alignment explanation
Indices: 97492723--97492766 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
97492713 TAAAAATTTC
97492723 AAATTGTATATATATTTTTA
1 AAATTGTATATATATTTTTA
* *
97492743 AAATTGTA-ATATTTTTTTT
1 AAATTGTATATATATTTTTA
97492762 AAATT
1 AAATT
97492767 TCAAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (20 bp):
AAATTGTATATATATTTTTA
Found at i:97506574 original size:21 final size:20
Alignment explanation
Indices: 97506535--97506593 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 20
97506525 ACAAATAGTA
97506535 TATATATTAT-TTATATATTAT
1 TATATATT-TGTT-TATATTAT
97506556 CTATCATA-TTGTTTATATTAT
1 -TAT-ATATTTGTTTATATTAT
97506577 TATATATTTTGTTTATA
1 TATATA-TTTGTTTATA
97506594 AATTTTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 18 0.55
22 6 0.18
23 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TATATATTTGTTTATATTAT
Found at i:97507004 original size:19 final size:18
Alignment explanation
Indices: 97506935--97507010 Score: 57
Period size: 19 Copynumber: 4.0 Consensus size: 18
97506925 TTTTTTTGAC
* *
97506935 TTATTTTTTTATATGTTTA
1 TTATTTTTGTAT-TGTTTT
*
97506954 TAATTTGTT-TATTTGTTTAT
1 TTATTT-TTGTA-TTGTTT-T
97506974 TTATTTTTGTATT-TTTT
1 TTATTTTTGTATTGTTTT
97506991 TTATTTTTTAGTATTGTTTT
1 TTA-TTTTT-GTATTGTTTT
97507011 AGTAGGTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
17 4 0.09
18 8 0.17
19 21 0.45
20 14 0.30
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (18 bp):
TTATTTTTGTATTGTTTT
Found at i:97507229 original size:42 final size:45
Alignment explanation
Indices: 97507165--97507251 Score: 117
Period size: 42 Copynumber: 2.0 Consensus size: 45
97507155 TTTTCTATGA
*
97507165 TATATTTTGCATGAAATATTAATGCAT-GTAT-ATTTATGTCATT
1 TATATTTTGCATGAAAGATTAATGCATAGTATAATTTATGTCATT
* * *
97507208 TATA-TTTGCATGAAAGGTTAATGTATATTATAATTTATGTCATT
1 TATATTTTGCATGAAAGATTAATGCATAGTATAATTTATGTCATT
97507252 ATTCATCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 19 0.50
43 7 0.18
44 12 0.32
ACGTcount: A:0.33, C:0.06, G:0.13, T:0.48
Consensus pattern (45 bp):
TATATTTTGCATGAAAGATTAATGCATAGTATAATTTATGTCATT
Found at i:97509390 original size:37 final size:38
Alignment explanation
Indices: 97509331--97509439 Score: 103
Period size: 38 Copynumber: 2.9 Consensus size: 38
97509321 AACGTAACGT
* * * **
97509331 TATTCGGGCTCCGTACCTAGCA-GTTTTGTGTTAGTGA
1 TATTCGGGCTCCCTACCGAGCAGGCTTTGTGCCAGTGA
* *
97509368 TATTCGGGCTCCCTGCCGAGCAGGCTTTGTGCCGGTGA
1 TATTCGGGCTCCCTACCGAGCAGGCTTTGTGCCAGTGA
** * * *
97509406 TATTCGGGCTCTGTGCCTAGCAAGCTTTGTGCCA
1 TATTCGGGCTCCCTACCGAGCAGGCTTTGTGCCA
97509440 ATGTATTATA
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
37 19 0.32
38 40 0.68
ACGTcount: A:0.14, C:0.25, G:0.29, T:0.32
Consensus pattern (38 bp):
TATTCGGGCTCCCTACCGAGCAGGCTTTGTGCCAGTGA
Found at i:97509406 original size:38 final size:38
Alignment explanation
Indices: 97509364--97509438 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
97509354 TTTTGTGTTA
*
97509364 GTGATATTCGGGCTCCCTGCCGAGCAGGCTTTGTGCCG
1 GTGATATTCGGGCTCCCTGCCGAGCAAGCTTTGTGCCG
** *
97509402 GTGATATTCGGGCTCTGTGCCTAGCAAGCTTTGTGCC
1 GTGATATTCGGGCTCCCTGCCGAGCAAGCTTTGTGCC
97509439 AATGTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.12, C:0.27, G:0.32, T:0.29
Consensus pattern (38 bp):
GTGATATTCGGGCTCCCTGCCGAGCAAGCTTTGTGCCG
Found at i:97509463 original size:25 final size:25
Alignment explanation
Indices: 97509429--97509482 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
97509419 TGCCTAGCAA
97509429 GCTTTGTGCCAATGTATTATATCAG
1 GCTTTGTGCCAATGTATTATATCAG
* *
97509454 GCTTTGTGCCAGTGTGTTATATCAG
1 GCTTTGTGCCAATGTATTATATCAG
97509479 GCTT
1 GCTT
97509483 CGAGCCTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.17, G:0.24, T:0.41
Consensus pattern (25 bp):
GCTTTGTGCCAATGTATTATATCAG
Found at i:97514060 original size:44 final size:44
Alignment explanation
Indices: 97513901--97514064 Score: 186
Period size: 44 Copynumber: 3.7 Consensus size: 44
97513891 CTCCTTGCTT
* * * * * *
97513901 AATACGGAGAGGCAAAATCTGTCATCTTTGATCTGTTTTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * * * *
97513945 AATACAGAGACGCCACATCT-ACTATCTTCAATATGCTCTTTGTC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* *
97513989 AATACAGAGACGCCAAACCTGTTATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
*
97514033 AATATAGAGACGCCAAATCTGTCATCTTCGAT
1 AATACAGAGACGCCAAATCTGTCATCTTCGAT
97514065 ATACAGAGTC
Statistics
Matches: 97, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
43 1 0.01
44 96 0.99
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (44 bp):
AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
Found at i:97514067 original size:29 final size:30
Alignment explanation
Indices: 97514034--97514094 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
97514024 CTCTCTGTCA
*
97514034 ATAT-AGAGACGCCAAATCTGTCATCTTCG
1 ATATAAGAGACGACAAATCTGTCATCTTCG
* *
97514063 ATATACAGAGTCGACAAATCTGTTATCTTCG
1 ATATA-AGAGACGACAAATCTGTCATCTTCG
97514094 A
1 A
97514095 CCTGCTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 4 0.15
31 23 0.85
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (30 bp):
ATATAAGAGACGACAAATCTGTCATCTTCG
Found at i:97514117 original size:75 final size:75
Alignment explanation
Indices: 97513990--97514139 Score: 237
Period size: 75 Copynumber: 2.0 Consensus size: 75
97513980 CTCTTTGTCA
* * *
97513990 ATACAGAGACGCCAAACCTGTTATCTTCGATCTGCTCTCTGTCAATATAGAGACGCCAAATCTGT
1 ATACAGAGACGACAAACCTGTTATCTTCGACCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
97514055 CATCTTCGAT
66 CATCTTCGAT
* * * *
97514065 ATACAGAGTCGACAAATCTGTTATCTTCGACCTGCTTTCTGTCAATACAGAGACGCCAAATTTGT
1 ATACAGAGACGACAAACCTGTTATCTTCGACCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
97514130 CATCTTCGAT
66 CATCTTCGAT
97514140 CTGCTCTCTG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (75 bp):
ATACAGAGACGACAAACCTGTTATCTTCGACCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
CATCTTCGAT
Found at i:97514135 original size:44 final size:44
Alignment explanation
Indices: 97514065--97514298 Score: 335
Period size: 44 Copynumber: 5.3 Consensus size: 44
97514055 CATCTTCGAT
* * * * *
97514065 ATACAGAGTCGACAAATCTGTTATCTTCGACCTGCTTTCTGTCA
1 ATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCA
*
97514109 ATACAGAGACGCCAAATTTGTCATCTTCGATCTGCTCTCTGTCA
1 ATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCA
* ** *
97514153 ATACAAAGACGAAAAATCTGTTATCTTCGATCTGCTCTCTGTCA
1 ATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCA
97514197 ATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCA
1 ATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCA
* *
97514241 ATACAGAGACGCCAAATCTG-CTATCTTTGATCTGCTCTCTGACA
1 ATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTCA
*
97514285 ATACAGAGATGCCA
1 ATACAGAGACGCCA
97514299 GATCGACTAT
Statistics
Matches: 171, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
43 1 0.01
44 170 0.99
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (44 bp):
ATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCA
Done.