Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 299 of 356
Found at i:97514185 original size:163 final size:163
Alignment explanation
Indices: 97513915--97514227 Score: 475
Period size: 163 Copynumber: 1.9 Consensus size: 163
97513905 CGGAGAGGCA
* * * *
97513915 AAATCTGTCATCTTTGATCTGTTTTCTGTCAATACAGAGACGCCACATCTACTATCTTCAATATG
1 AAATCTGTCATCTTCGACCTGCTTTCTGTCAATACAGAGACGCCAAATCTACTATCTTCAATATG
* * ** *
97513980 CTCTTTGTCAATACAGAGACGCCAAACCTGTTATCTTCGATCTGCTCTCTGTCAATATAGAGACG
66 CTCTCTGTCAATACAAAGACGAAAAACCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACG
97514045 CCAAATCTGTCATCTTCGATATACAGAGTCGAC
131 CCAAATCTGTCATCTTCGATATACAGAGTCGAC
* ** * *
97514078 AAATCTGTTATCTTCGACCTGCTTTCTGTCAATACAGAGACGCCAAAT-TTGTCATCTTCGATCT
1 AAATCTGTCATCTTCGACCTGCTTTCTGTCAATACAGAGACGCCAAATCTACT-ATCTTCAATAT
*
97514142 GCTCTCTGTCAATACAAAGACGAAAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGAC
65 GCTCTCTGTCAATACAAAGACGAAAAACCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGAC
97514207 GCCAAATCTGTCATCTTCGAT
130 GCCAAATCTGTCATCTTCGAT
97514228 CTGCTCTCTG
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
162 2 0.01
163 132 0.99
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (163 bp):
AAATCTGTCATCTTCGACCTGCTTTCTGTCAATACAGAGACGCCAAATCTACTATCTTCAATATG
CTCTCTGTCAATACAAAGACGAAAAACCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAGACG
CCAAATCTGTCATCTTCGATATACAGAGTCGAC
Found at i:97530038 original size:17 final size:17
Alignment explanation
Indices: 97530015--97530065 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 17
97530005 ATAGGGAATA
97530015 ATATAATAAAATATGAT
1 ATATAATAAAATATGAT
* *
97530032 ATGTAATAAAATATGAA
1 ATATAATAAAATATGAT
*
97530049 ATATAA-ATAATATGAT
1 ATATAATAAAATATGAT
97530065 A
1 A
97530066 AAATAACATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 9 0.31
17 20 0.69
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (17 bp):
ATATAATAAAATATGAT
Found at i:97530357 original size:30 final size:30
Alignment explanation
Indices: 97530323--97530380 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
97530313 ATAATGGCCA
*
97530323 TTAGGACTAAATTGAAACAAAAATAAAAGG
1 TTAGGACCAAATTGAAACAAAAATAAAAGG
* ** *
97530353 TTAGGGCCAAATTTTAATAAAAATAAAA
1 TTAGGACCAAATTGAAACAAAAATAAAA
97530381 TGAAATGGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.55, C:0.07, G:0.14, T:0.24
Consensus pattern (30 bp):
TTAGGACCAAATTGAAACAAAAATAAAAGG
Found at i:97532199 original size:38 final size:38
Alignment explanation
Indices: 97532114--97532211 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 38
97532104 GAATATAATG
* * *
97532114 ATTATAATTACCATAATTATAATAATGTTTGACAAAAA
1 ATTATAATTACAATAATTATAATAATATTCGACAAAAA
* * **
97532152 AATACAATTACAATAATTATAATAATATTCGATC-GTAA
1 ATTATAATTACAATAATTATAATAATATTCGA-CAAAAA
97532190 ATTATAATTACAATAATTATAA
1 ATTATAATTACAATAATTATAA
97532212 CAAGAATTTC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 49 0.98
39 1 0.02
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (38 bp):
ATTATAATTACAATAATTATAATAATATTCGACAAAAA
Found at i:97533966 original size:23 final size:23
Alignment explanation
Indices: 97533940--97533984 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97533930 ATATATTCAG
97533940 ATTAAAT-TTTACAAATAATTTAT
1 ATTAAATATTTA-AAATAATTTAT
* *
97533963 ATTAATTATTTAAAATTATTTA
1 ATTAAATATTTAAAATAATTTA
97533985 AAATTTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTAAATATTTAAAATAATTTAT
Found at i:97534504 original size:30 final size:30
Alignment explanation
Indices: 97534468--97534526 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
97534458 AAATAATTCA
* *
97534468 ACTCTTTTTGAAAGGTTGA-TGGTAAAATTG
1 ACTCTTTTTAAAAAGTTGATTGG-AAAATTG
97534498 ACTCTTTTTAAAAAGTTGATTGGAAAATT
1 ACTCTTTTTAAAAAGTTGATTGGAAAATT
97534527 TAGCTCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.41
Consensus pattern (30 bp):
ACTCTTTTTAAAAAGTTGATTGGAAAATTG
Found at i:97539963 original size:13 final size:13
Alignment explanation
Indices: 97539947--97539972 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97539937 AACTATAAGA
97539947 AGCTTAAAATCAT
1 AGCTTAAAATCAT
97539960 AGCTTAAAATCAT
1 AGCTTAAAATCAT
97539973 CATCCTCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
AGCTTAAAATCAT
Found at i:97543803 original size:27 final size:27
Alignment explanation
Indices: 97543765--97543821 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
97543755 CTCAACTTTT
97543765 TAAAATGTGTATTTTCAGTCCTAATTC
1 TAAAATGTGTATTTTCAGTCCTAATTC
97543792 TAAAATGTGTATTTTCAGTCCTAATTC
1 TAAAATGTGTATTTTCAGTCCTAATTC
97543819 TAA
1 TAA
97543822 TTTTTACTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (27 bp):
TAAAATGTGTATTTTCAGTCCTAATTC
Found at i:97545106 original size:21 final size:21
Alignment explanation
Indices: 97545069--97545109 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
97545059 ATAAAAATAA
97545069 AAAAATAAAATTAAGAATTTGG
1 AAAAATAAAA-TAAGAATTTGG
97545091 AAAAATAAAA-ACAGAATTT
1 AAAAATAAAATA-AGAATTT
97545110 AAAGTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 7 0.39
22 10 0.56
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.24
Consensus pattern (21 bp):
AAAAATAAAATAAGAATTTGG
Found at i:97545141 original size:17 final size:18
Alignment explanation
Indices: 97545121--97545154 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
97545111 AAGTGAATTG
97545121 AAATTGCA-AAATTAAAT
1 AAATTGCAGAAATTAAAT
97545138 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
97545155 ATGAGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:97545865 original size:10 final size:10
Alignment explanation
Indices: 97545847--97545897 Score: 68
Period size: 10 Copynumber: 5.1 Consensus size: 10
97545837 AATGAAATTC
*
97545847 TAAAAATAAA
1 TAAAGATAAA
97545857 TACAA-ATAAA
1 TA-AAGATAAA
*
97545867 TAAAGATAAT
1 TAAAGATAAA
97545877 TAAAGATAAA
1 TAAAGATAAA
97545887 TAAAGATAAA
1 TAAAGATAAA
97545897 T
1 T
97545898 GTAAATAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
9 2 0.05
10 33 0.89
11 2 0.05
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (10 bp):
TAAAGATAAA
Found at i:97545875 original size:20 final size:19
Alignment explanation
Indices: 97545847--97545907 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
97545837 AATGAAATTC
*
97545847 TAAAAATAAATACAAATAAA
1 TAAAGATAAATA-AAATAAA
*
97545867 TAAAGATAATTAAAGATAAA
1 TAAAGATAAATAAA-ATAAA
*
97545887 TAAAGATAAATGTAAATAAA
1 TAAAGATAAAT-AAAATAAA
97545907 T
1 T
97545908 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.06
20 31 0.89
21 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (19 bp):
TAAAGATAAATAAAATAAA
Found at i:97547502 original size:20 final size:20
Alignment explanation
Indices: 97547476--97547528 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
97547466 CAAGGATAAG
97547476 GTATTGATACTTTGTGAAA-
1 GTATTGATACTTTGTGAAAT
*
97547495 GATATTGATACTTTGTTAAAT
1 G-TATTGATACTTTGTGAAAT
*
97547516 GTATCGATACTTT
1 GTATTGATACTTT
97547529 TGATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.45
Consensus pattern (20 bp):
GTATTGATACTTTGTGAAAT
Found at i:97555398 original size:30 final size:30
Alignment explanation
Indices: 97555362--97555424 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
97555352 GATAAAAGGT
97555362 AACTCTTTCTACTATCTCTGCATGTAAACA
1 AACTCTTTCTACTATCTCTGCATGTAAACA
*
97555392 AACTCTTTCTACTATTTCTGCATGTAAACA
1 AACTCTTTCTACTATCTCTGCATGTAAACA
97555422 AAC
1 AAC
97555425 ACACCCTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (30 bp):
AACTCTTTCTACTATCTCTGCATGTAAACA
Found at i:97562202 original size:23 final size:21
Alignment explanation
Indices: 97562150--97562245 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
97562140 CCTGATCAGT
** * *
97562150 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
* *
97562171 AAACGACACACGAGGTACCTG
1 ATACGACACACGAGGTGCCTG
97562192 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
97562213 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
97562234 AAATACGACACA
1 --ATACGACACA
97562246 TAAAGTGCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
21 55 0.85
23 10 0.15
ACGTcount: A:0.38, C:0.27, G:0.22, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:97562210 original size:42 final size:43
Alignment explanation
Indices: 97562150--97562257 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 43
97562140 CCTGATCAGT
*
97562150 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTACCTG-
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTACCTGA
* * * * *
97562192 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTACCTG-A
*
97562236 ATACGACACATAAAGTGCCTAA
1 ATACGACACACAAAGTGCCTAA
97562258 TCAGTAAAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 36 0.67
44 18 0.33
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (43 bp):
ATACGACACACAAAGTGCCTAAAACGACACACGAGGTACCTGA
Found at i:97562653 original size:15 final size:15
Alignment explanation
Indices: 97562628--97562685 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
97562618 TCATATATAT
97562628 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
97562644 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
97562659 AATAATTTCAATCAA
1 TATAAATTCAATCAA
97562674 TATAAATTCAAT
1 TATAAATTCAAT
97562686 AAATTCATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:97563971 original size:5 final size:5
Alignment explanation
Indices: 97563955--97563992 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
97563945 TCTTTGGTTT
*
97563955 ATATA TATATA ATATA ATAGA ATATA ATATA ATATA AT
1 ATATA -ATATA ATATA ATATA ATATA ATATA ATATA AT
97563993 TAAAACATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:97564705 original size:5 final size:5
Alignment explanation
Indices: 97564695--97564722 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
97564685 CCAATTTGTG
97564695 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
97564723 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:97564846 original size:17 final size:17
Alignment explanation
Indices: 97564820--97564857 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
97564810 TATAAGAGGA
*
97564820 ATAGACTATGTCTATTT
1 ATAGAATATGTCTATTT
97564837 ATAGAATATGTCTATTT
1 ATAGAATATGTCTATTT
97564854 ATAG
1 ATAG
97564858 GCTTGTAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (17 bp):
ATAGAATATGTCTATTT
Found at i:97567733 original size:30 final size:32
Alignment explanation
Indices: 97567673--97567736 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
97567663 CACTTATTTT
97567673 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
97567706 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
97567737 ATACATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:97567996 original size:41 final size:41
Alignment explanation
Indices: 97567951--97568106 Score: 210
Period size: 41 Copynumber: 3.8 Consensus size: 41
97567941 ACCGGCTCTT
*
97567951 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
97567992 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
97568033 AGCCTGCTAGA-TGTAAAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACT-TATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
97568074 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
97568107 TAACGATAAA
Statistics
Matches: 105, Mismatches: 4, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
39 2 0.02
40 3 0.03
41 95 0.90
42 2 0.02
43 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:97570804 original size:24 final size:24
Alignment explanation
Indices: 97570766--97570834 Score: 68
Period size: 28 Copynumber: 2.7 Consensus size: 24
97570756 CATATATCAC
97570766 TAAGTACAAAGTGC-AAATAATGA
1 TAAGTACAAAGTGCAAAATAATGA
*
97570789 TAAGTACCGAAGTGCAAAATAATTATGA
1 TAAGTA-CAAAGTGCAAAAT-A--ATGA
*
97570817 TAAGCACAAAAGTGCAAA
1 TAAGTAC-AAAGTGCAAA
97570835 TTTTACAACG
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
23 6 0.16
24 7 0.19
25 4 0.11
26 1 0.03
27 1 0.03
28 18 0.49
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (24 bp):
TAAGTACAAAGTGCAAAATAATGA
Found at i:97579881 original size:21 final size:22
Alignment explanation
Indices: 97579852--97579898 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
97579842 CAGAAGGAGT
*
97579852 GAGTAGTACTTCACAGCAGGTG
1 GAGTAGTACTCCACAGCAGGTG
*
97579874 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCACAGCAGGTG
97579895 GAGT
1 GAGT
97579899 TTGAGCAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCACAGCAGGTG
Found at i:97582155 original size:19 final size:18
Alignment explanation
Indices: 97582114--97582155 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
97582104 ATCAACCCAA
* *
97582114 TAAATATTTTTTATTTCT
1 TAAATATTATTTATTTAT
97582132 TAAATATTATTTATTTAAT
1 TAAATATTATTTATTT-AT
97582151 TAAAT
1 TAAAT
97582156 CAATTAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TAAATATTATTTATTTAT
Found at i:97587841 original size:15 final size:17
Alignment explanation
Indices: 97587823--97587854 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97587813 ATATTTATGT
97587823 ATAAAA-TT-ATGTAAA
1 ATAAAAGTTGATGTAAA
97587838 ATAAAAGTTGATGTAAA
1 ATAAAAGTTGATGTAAA
97587855 TATTTCACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.31
Consensus pattern (17 bp):
ATAAAAGTTGATGTAAA
Found at i:97596145 original size:3 final size:3
Alignment explanation
Indices: 97596137--97596165 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
97596127 ATATACACAA
97596137 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
97596166 GGTATAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:97601201 original size:11 final size:10
Alignment explanation
Indices: 97601184--97601208 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
97601174 TATCTCACTC
97601184 ATTTTTTTTT
1 ATTTTTTTTT
97601194 ATTTTTTTTT
1 ATTTTTTTTT
97601204 ATTTT
1 ATTTT
97601209 GTGCTCACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (10 bp):
ATTTTTTTTT
Found at i:97603605 original size:22 final size:22
Alignment explanation
Indices: 97603577--97603621 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
97603567 GAGTTAGAAA
97603577 AATATTTAAAAAATTATTTTCT
1 AATATTTAAAAAATTATTTTCT
*
97603599 AATATTTTAAAAATTATTTTCT
1 AATATTTAAAAAATTATTTTCT
97603621 A
1 A
97603622 TGTTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATTTAAAAAATTATTTTCT
Found at i:97610956 original size:56 final size:56
Alignment explanation
Indices: 97610870--97611004 Score: 180
Period size: 56 Copynumber: 2.4 Consensus size: 56
97610860 CCATGGCTTC
* ** * *
97610870 GATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCGATTTGTGACTTT
1 GATATATGTGTGCGAGTAAGACCACGTTTTATACGCCGGCATCGATATGTGACTCT
* * * *
97610926 GATATATGTGTACAAGTAAGACCACGTTTTATATGCCGGCATTGATATGTGACTCT
1 GATATATGTGTGCGAGTAAGACCACGTTTTATACGCCGGCATCGATATGTGACTCT
*
97610982 GATATACGTGTGCGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
97611005 CTGTATGGGA
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTTTATACGCCGGCATCGATATGTGACTCT
Found at i:97615630 original size:24 final size:24
Alignment explanation
Indices: 97615598--97615646 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
97615588 GAGACTATCA
97615598 TTGCTCAGCGGTAAAACCAGGAAT
1 TTGCTCAGCGGTAAAACCAGGAAT
97615622 TTGCTCAGCGGTAAAACCAGGAAT
1 TTGCTCAGCGGTAAAACCAGGAAT
97615646 T
1 T
97615647 GTCACCCACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (24 bp):
TTGCTCAGCGGTAAAACCAGGAAT
Found at i:97618734 original size:43 final size:42
Alignment explanation
Indices: 97618685--97618805 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 42
97618675 GAGAGGATAT
97618685 ACAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAAC
1 ACAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAAC
* * *
97618727 ATCAATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAAT
1 A-CAATGCCAATGTCCCAGAC-GTGGTCTTACACGTAATCAAAC
* ** *
97618770 ACGATGCTGATGTCCCAGACATGGTCTTACACGTAA
1 ACAATGCCAATGTCCCAGACGTGGTCTTACACGTAA
97618806 AACAGAAGTC
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 29 0.43
43 37 0.55
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
ACAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAAC
Found at i:97622763 original size:56 final size:56
Alignment explanation
Indices: 97622689--97622829 Score: 162
Period size: 56 Copynumber: 2.5 Consensus size: 56
97622679 GGCACTTAAC
* * * * *
97622689 TGCGAAGTATCGGGGATGGCACTTAGTGTGTGATACATCCAAAATGGCATTTAGTG
1 TGCGAAGTATCGAGGATGGCACTTAGTGTATGAAACATCCAAAATAGCACTTAGTG
*
97622745 TGCGAAGTAAT-GAGGATGGCACTTAGTGTATGAAACATCCATAATAGCACTTAGTG
1 TGCGAAGT-ATCGAGGATGGCACTTAGTGTATGAAACATCCAAAATAGCACTTAGTG
* *
97622801 TGTGAGGTATCG-GGTATGGCA-TCTAGTGT
1 TGCGAAGTATCGAGG-ATGGCACT-TAGTGT
97622830 GCGAGACATT
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
55 5 0.07
56 66 0.90
57 2 0.03
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (56 bp):
TGCGAAGTATCGAGGATGGCACTTAGTGTATGAAACATCCAAAATAGCACTTAGTG
Found at i:97622917 original size:32 final size:32
Alignment explanation
Indices: 97622881--97622948 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
97622871 TGAGTACGAG
*
97622881 AATTGGTACGAGATGGTACATGTATGTATGAA
1 AATTGGTACGAGATGGTACAGGTATGTATGAA
*
97622913 AATTGGTACGAGATGGTACAGGTATGTATGGA
1 AATTGGTACGAGATGGTACAGGTATGTATGAA
97622945 AATT
1 AATT
97622949 CAATTGAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (32 bp):
AATTGGTACGAGATGGTACAGGTATGTATGAA
Found at i:97628932 original size:36 final size:36
Alignment explanation
Indices: 97628885--97628957 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
97628875 CTTGTTGAAG
*
97628885 TTCTACCACAAATGAATCAATGGAAGATTCATCATA
1 TTCTACCACAAATGAAGCAATGGAAGATTCATCATA
* * * *
97628921 TTCTAGCACAAATGAAGCAGTGGAAGGTTTATCATA
1 TTCTACCACAAATGAAGCAATGGAAGATTCATCATA
97628957 T
1 T
97628958 ATCTTGAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (36 bp):
TTCTACCACAAATGAAGCAATGGAAGATTCATCATA
Found at i:97630697 original size:14 final size:15
Alignment explanation
Indices: 97630674--97630706 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
97630664 AAGAAGGACG
97630674 AAAAATTAAATAAAT
1 AAAAATTAAATAAAT
*
97630689 AAAAA-TAAATAACT
1 AAAAATTAAATAAAT
97630703 AAAA
1 AAAA
97630707 TAACTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAAATTAAATAAAT
Found at i:97632937 original size:33 final size:32
Alignment explanation
Indices: 97632885--97632958 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 32
97632875 ATAATATCAT
*
97632885 ATAATATTCTTTTAGGAATCAAATTGCTAAGAG
1 ATAATA-TCTTTTAGGAATCAAATTGCTAAAAG
*
97632918 ATAATATCTTATTATGAATCAAATTGCTAAAAG
1 ATAATATCTT-TTAGGAATCAAATTGCTAAAAG
97632951 ATAATATC
1 ATAATATC
97632959 CTAACATTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 4 0.11
33 34 0.89
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (32 bp):
ATAATATCTTTTAGGAATCAAATTGCTAAAAG
Found at i:97634364 original size:22 final size:22
Alignment explanation
Indices: 97634336--97634405 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
97634326 CCCTGAGTCT
97634336 AGCAGGATTGGCACCATGTTCC
1 AGCAGGATTGGCACCATGTTCC
* * *
97634358 AGCAGGA--GTCA-C-TGAGTCT
1 AGCAGGATTGGCACCATG-TTCC
97634377 AGCAGGATTGGCACCATGTTCC
1 AGCAGGATTGGCACCATGTTCC
97634399 AGCAGGA
1 AGCAGGA
97634406 GTCAAAGCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 2 0.05
19 10 0.27
20 3 0.08
21 3 0.08
22 17 0.46
23 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (22 bp):
AGCAGGATTGGCACCATGTTCC
Found at i:97634373 original size:41 final size:41
Alignment explanation
Indices: 97634328--97634409 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
97634318 TCCATAAACC
97634328 CTGAGTCTAGCAGGATTGGCACCATGTTCCAGCAGGAGTCA
1 CTGAGTCTAGCAGGATTGGCACCATGTTCCAGCAGGAGTCA
97634369 CTGAGTCTAGCAGGATTGGCACCATGTTCCAGCAGGAGTCA
1 CTGAGTCTAGCAGGATTGGCACCATGTTCCAGCAGGAGTCA
97634410 AAGCATATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (41 bp):
CTGAGTCTAGCAGGATTGGCACCATGTTCCAGCAGGAGTCA
Found at i:97641491 original size:24 final size:24
Alignment explanation
Indices: 97641431--97641483 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
97641421 ATTCGTAGGT
*
97641431 TAAATAAATTATACTAATAAATAC
1 TAAATATATTATACTAATAAATAC
* *
97641455 TAAATATATTATATTAATAGATAC
1 TAAATATATTATACTAATAAATAC
97641479 TAAAT
1 TAAAT
97641484 CTTTTATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (24 bp):
TAAATATATTATACTAATAAATAC
Found at i:97642199 original size:24 final size:24
Alignment explanation
Indices: 97642146--97642191 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
97642136 TCTTTCTAGA
* *
97642146 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAGCATTTATTAGCATAAT
97642170 ATATTTAGCATTTATTAGCATA
1 ATATTTAGCATTTATTAGCATA
97642192 GTTTATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGCATAAT
Found at i:97644482 original size:24 final size:23
Alignment explanation
Indices: 97644450--97644513 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 23
97644440 AACACCCTTC
*
97644450 TTTTCCTCCTCATTTACCCCTTTT
1 TTTTCCTCCTCATTTACCCC-TCT
*
97644474 TTTTCCTCCCCATTTACCCCTCT
1 TTTTCCTCCTCATTTACCCCTCT
97644497 TTTTCCTCCTCATTTAC
1 TTTTCCTCCTCATTTAC
97644514 TGCCTTTACA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
23 18 0.49
24 19 0.51
ACGTcount: A:0.09, C:0.41, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTTCCTCCTCATTTACCCCTCT
Found at i:97655320 original size:40 final size:39
Alignment explanation
Indices: 97655256--97655467 Score: 246
Period size: 40 Copynumber: 5.3 Consensus size: 39
97655246 TCTTCGAAAT
* * *
97655256 TTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
97655295 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
97655335 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
97655375 TTATCCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * * *
97655415 TTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
97655455 TTAGCCCGGATAT
1 TTAGCCCGGATAT
97655468 CATTCAAATG
Statistics
Matches: 145, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 10 0.07
40 128 0.88
41 7 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:97655383 original size:80 final size:80
Alignment explanation
Indices: 97655256--97655467 Score: 327
Period size: 80 Copynumber: 2.7 Consensus size: 80
97655246 TCTTCGAAAT
* * * * * *
97655256 TTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
97655320 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
97655335 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
97655400 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
97655415 TTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
97655468 CATTCAAATG
Statistics
Matches: 120, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 4 0.03
80 116 0.97
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:97659945 original size:16 final size:16
Alignment explanation
Indices: 97659924--97659954 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97659914 TTGCTGCTCC
*
97659924 CAAATTTTTCATCTCT
1 CAAATTTCTCATCTCT
97659940 CAAATTTCTCATCTC
1 CAAATTTCTCATCTC
97659955 AAATTCTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (16 bp):
CAAATTTCTCATCTCT
Found at i:97673878 original size:9 final size:9
Alignment explanation
Indices: 97673864--97673940 Score: 93
Period size: 9 Copynumber: 8.6 Consensus size: 9
97673854 ATAAGTATAA
97673864 AATTAACCG
1 AATTAACCG
97673873 AATTAACCG
1 AATTAACCG
**
97673882 AATTAATTG
1 AATTAACCG
*
97673891 AATTAACTG
1 AATTAACCG
97673900 AATT-ACTCG
1 AATTAAC-CG
* *
97673909 AATTACCCA
1 AATTAACCG
97673918 AATTAACCG
1 AATTAACCG
97673927 AATTAACCG
1 AATTAACCG
97673936 AATTA
1 AATTA
97673941 TTTGTATAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
8 2 0.03
9 55 0.95
10 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:97673976 original size:6 final size:6
Alignment explanation
Indices: 97673960--97674012 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
97673950 AATTATATGT
* * *
97673960 TTTTTA GTTTTA TTTTTA TTTTTA GTTTTA GTTTTAGA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA
97674010 TTT
1 TTT
97674013 ATTAAATTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 31 0.79
7 7 0.18
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:97673983 original size:18 final size:19
Alignment explanation
Indices: 97673960--97674012 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
97673950 AATTATATGT
*
97673960 TTTTTAGTTTTATTTT-TA
1 TTTTTAGTTTTATTTTAGA
97673978 TTTTTAGTTTTAGTTTTAGA
1 TTTTTAGTTTTA-TTTTAGA
*
97673998 TTTTTATTTTTATTT
1 TTTTTAGTTTTATTT
97674013 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 12 0.39
19 7 0.23
20 12 0.39
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (19 bp):
TTTTTAGTTTTATTTTAGA
Found at i:97673987 original size:26 final size:25
Alignment explanation
Indices: 97673961--97674009 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
97673951 ATTATATGTT
97673961 TTTTAGTTTT-ATTTTTATTTTTAG
1 TTTTAGTTTTAATTTTTATTTTTAG
97673985 TTTTAGTTTTAGATTTTTATTTTTA
1 TTTTAGTTTTA-ATTTTTATTTTTA
97674010 TTTATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 10 0.43
26 13 0.57
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.73
Consensus pattern (25 bp):
TTTTAGTTTTAATTTTTATTTTTAG
Found at i:97674053 original size:13 final size:13
Alignment explanation
Indices: 97674037--97674061 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97674027 AATTTTTATG
97674037 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
97674050 ATTGGGTTGGGT
1 ATTGGGTTGGGT
97674062 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:97674061 original size:18 final size:18
Alignment explanation
Indices: 97674038--97674075 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
97674028 ATTTTTATGA
97674038 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
97674056 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
97674074 TT
1 TT
97674076 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:97679084 original size:6 final size:5
Alignment explanation
Indices: 97679060--97679090 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
97679050 TAACTAATTT
97679060 AATAA AATAA AATAA AATAAA AATAA AATAA
1 AATAA AATAA AATAA AAT-AA AATAA AATAA
97679091 TATCTTCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:97679084 original size:11 final size:11
Alignment explanation
Indices: 97679060--97679090 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
97679050 TAACTAATTT
97679060 AATAAAAT-AA
1 AATAAAATAAA
97679070 AATAAAATAAA
1 AATAAAATAAA
97679081 AATAAAATAA
1 AATAAAATAA
97679091 TATCTTCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:97679734 original size:45 final size:45
Alignment explanation
Indices: 97679497--97679968 Score: 216
Period size: 45 Copynumber: 10.6 Consensus size: 45
97679487 TAGCTTCGAT
* * *
97679497 CTACTCCGCTGAAACTTCAAGGAGATAAGAATTGGTAAT-TTCAAC
1 CTACTCCACTGCAACTTCAGGGAGATAAG-ATTGGTAATCTTCAAC
* * * * * *
97679542 CTGCTCCACTGCAACTTCAGGGAAATAAAGCTT-GTACT-TTTATC
1 CTACTCCACTGCAACTTCAGGGAGAT-AAGATTGGTAATCTTCAAC
* * * * * * * *
97679586 CTGCTCTACTGCAACTTCAGAGAGATAGGA-TCGTGA-CTTCGAT
1 CTACTCCACTGCAACTTCAGGGAGATAAGATTGGTAATCTTCAAC
* * * * * * ** *
97679629 CTGCTCCAATGTAATTTCAGGGAGA-AGAGATTTGT-AGCTTTGAT
1 CTACTCCACTGCAACTTCAGGGAGATA-AGATTGGTAATCTTCAAC
* * * *
97679673 CTACTCCGCTGGAACTTCAAGGAGGTAAGAGTTGGTAAT-TTCAAC
1 CTACTCCACTGCAACTTCAGGGAGATAAGA-TTGGTAATCTTCAAC
* * ** **
97679718 CTACTTCACTGCAACTTCAGGGAGATAAGATTTGTGGTCTTCAGT
1 CTACTCCACTGCAACTTCAGGGAGATAAGATTGGTAATCTTCAAC
*
97679763 CTACTCCACTGCAACTTCAGGGAGATAAGACTTGCT-A-CTTCAAC
1 CTACTCCACTGCAACTTCAGGGAGATAAGA-TTGGTAATCTTCAAC
* * * * * * * *
97679807 CTGCTCTACTCCAACTTCAGAGAGATAAGGTTTGCT-ATCTTCGAT
1 CTACTCCACTGCAACTTCAGGGAGATAA-GATTGGTAATCTTCAAC
* *** * * **
97679852 CTATTTTGCTGTAACTTCAGGGAGATAAGATCTGCT-ATCTTCAGT
1 CTACTCCACTGCAACTTCAGGGAGATAAGAT-TGGTAATCTTCAAC
* *** *
97679897 CTGCTCCACTGCAACTTCAAAAAGATAAGACTTGCT-A-CTTCAAC
1 CTACTCCACTGCAACTTCAGGGAGATAAGA-TTGGTAATCTTCAAC
* * * *
97679941 CTGCTCTACTGTAACTTCAGAGAGATAA
1 CTACTCCACTGCAACTTCAGGGAGATAA
97679969 AGTTCGCCAT
Statistics
Matches: 324, Mismatches: 88, Indels: 31
0.73 0.20 0.07
Matches are distributed among these distances:
42 2 0.01
43 29 0.09
44 132 0.41
45 153 0.47
46 8 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
CTACTCCACTGCAACTTCAGGGAGATAAGATTGGTAATCTTCAAC
Found at i:97679832 original size:89 final size:88
Alignment explanation
Indices: 97679480--97679937 Score: 290
Period size: 89 Copynumber: 5.2 Consensus size: 88
97679470 TAGGGAAAAG
* * * * *
97679480 AGATTTG-TAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGATAAGAATTGGTAATTTCAACCT
1 AGATTTGCTATCTTCGATCTACTCCGCTGCAACTTCAGGGAGATAAG-ATTGCT-ACTTCAACCT
* * *
97679544 GCTCCACTGCAACTTCAGGGAAATA
64 GCTCTACTGCAACTTCAGAGAGATA
* ** * ** * * * * *
97679569 A-AGCTTG-TA-CTTTTATCCTGCTCTACTGCAACTTCAGAGAGATAGGATCG-TGACTTCGATC
1 AGA-TTTGCTATCTTCGAT-CTACTCCGCTGCAACTTCAGGGAGATAAGATTGCT-ACTTCAACC
* * * * *
97679630 TGCTCCAATGTAATTTCAGGGAGA-A
63 TGCTCTACTGCAACTTCAGAGAGATA
* * * * * * *
97679655 GAGATTTG-TAGCTTTGATCTACTCCGCTGGAACTTCAAGGAGGTAAGAGTTGGTAATTTCAACC
1 -AGATTTGCTATCTTCGATCTACTCCGCTGCAACTTCAGGGAGATAAGA-TTGCT-ACTTCAACC
* *
97679719 TACT-TCACTGCAACTTCAGGGAGATA
63 TGCTCT-ACTGCAACTTCAGAGAGATA
* *
97679745 AGATTTG-TGGTCTTC-AGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCTACTTCAACC
1 AGATTTGCT-ATCTTCGA-TCTACTCCGCTGCAACTTCAGGGAGATAAGA-TTGCTACTTCAACC
*
97679808 TGCTCTACTCCAACTTCAGAGAGATA
63 TGCTCTACTGCAACTTCAGAGAGATA
* * ** * **
97679834 AGGTTTGCTATCTTCGATCTATTTTGCTGTAACTTCAGGGAGATAAGATCTGCTATCTTCAGTCT
1 AGATTTGCTATCTTCGATCTACTCCGCTGCAACTTCAGGGAGATAAGAT-TGCTA-CTTCAACCT
* * *
97679899 GCTCCACTGCAACTTCAAAAAGATA
64 GCTCTACTGCAACTTCAGAGAGATA
*
97679924 AGACTTGCTA-CTTC
1 AGATTTGCTATCTTC
97679938 AACCTGCTCT
Statistics
Matches: 286, Mismatches: 67, Indels: 32
0.74 0.17 0.08
Matches are distributed among these distances:
86 1 0.00
87 55 0.19
88 19 0.07
89 137 0.48
90 74 0.26
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (88 bp):
AGATTTGCTATCTTCGATCTACTCCGCTGCAACTTCAGGGAGATAAGATTGCTACTTCAACCTGC
TCTACTGCAACTTCAGAGAGATA
Found at i:97679895 original size:134 final size:134
Alignment explanation
Indices: 97679712--97680020 Score: 422
Period size: 134 Copynumber: 2.3 Consensus size: 134
97679702 AGTTGGTAAT
* * * * * *
97679712 TTCAACCTACTTCACTGCAACTTCAGGGAGATAAGATTTGTGGTCTTCAGTCTACTCCACTGCAA
1 TTCAATCTATTTCGCTGTAACTTCAGGGAGATAAGATCTGTGATCTTCAGTCTACTCCACTGCAA
*** * *
97679777 CTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCTACTCCAACTTCAGAGAGATAAGGTTTGC
66 CTTCAAAAAGATAAGACTTGCTACTTCAACCTGCTCTACTCCAACTTCAGAGAGATAAAGTTCGC
*
97679842 TATC
131 CATC
* * *
97679846 TTCGATCTATTTTGCTGTAACTTCAGGGAGATAAGATCTGCT-ATCTTCAGTCTGCTCCACTGCA
1 TTCAATCTATTTCGCTGTAACTTCAGGGAGATAAGATCTG-TGATCTTCAGTCTACTCCACTGCA
**
97679910 ACTTCAAAAAGATAAGACTTGCTACTTCAACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTCG
65 ACTTCAAAAAGATAAGACTTGCTACTTCAACCTGCTCTACTCCAACTTCAGAGAGATAAAGTTCG
97679975 CCATC
130 CCATC
* * *
97679980 TTCAATTTATTTCGCTGTAACTTCAAGGAGATAAAATCTGT
1 TTCAATCTATTTCGCTGTAACTTCAGGGAGATAAGATCTGT
97680021 CGATTTACCG
Statistics
Matches: 152, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
133 1 0.01
134 150 0.99
135 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (134 bp):
TTCAATCTATTTCGCTGTAACTTCAGGGAGATAAGATCTGTGATCTTCAGTCTACTCCACTGCAA
CTTCAAAAAGATAAGACTTGCTACTTCAACCTGCTCTACTCCAACTTCAGAGAGATAAAGTTCGC
CATC
Found at i:97679957 original size:89 final size:89
Alignment explanation
Indices: 97679763--97679968 Score: 227
Period size: 89 Copynumber: 2.3 Consensus size: 89
97679753 GGTCTTCAGT
* * * *
97679763 CTACTCCACTGCAACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCTACTCCAACTTCAGA
1 CTACTCTACTGTAACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTCCAACTTCAAA
* ** * *
97679828 GAGATAAGGTTTGCTATCTTCGAT
66 AAGATAAGACTTGCTATCTTCAAC
* * * ** *
97679852 CTATTTTGCTGTAACTTCAGGGAGATAAGA-TCTGCTATCTTCAGTCTGCTCCACTGCAACTTCA
1 CTACTCTACTGTAACTTCAGGGAGATAAGACT-TGCTA-CTTCAACCTGCTCCACTCCAACTTCA
97679916 AAAAGATAAGACTTGCTA-CTTCAAC
64 AAAAGATAAGACTTGCTATCTTCAAC
* *
97679941 CTGCTCTACTGTAACTTCAGAGAGATAA
1 CTACTCTACTGTAACTTCAGGGAGATAA
97679969 AGTTCGCCAT
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
88 1 0.01
89 58 0.61
90 36 0.38
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (89 bp):
CTACTCTACTGTAACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTCCAACTTCAAA
AAGATAAGACTTGCTATCTTCAAC
Found at i:97680463 original size:46 final size:46
Alignment explanation
Indices: 97680333--97680467 Score: 146
Period size: 46 Copynumber: 2.9 Consensus size: 46
97680323 CTGGTTTACT
* * * * *
97680333 CCACTGCATCTTCAGGGAG-ATAAAATTTGTGGTTTCTTCTATCTATT
1 CCACTGCAAC-TCAGGG-GTATAAGATTTGTGGCTTCTTCAATCTATC
* * * ** *
97680380 CCACTACAACTCAAGGGTACAAGATTTGTAACATCTTCAATCTATC
1 CCACTGCAACTCAGGGGTATAAGATTTGTGGCTTCTTCAATCTATC
97680426 CCACTGCAACTCAGGGGTATAAGATTTGTGGCTTCTTCAATC
1 CCACTGCAACTCAGGGGTATAAGATTTGTGGCTTCTTCAATC
97680468 AATTGATCTG
Statistics
Matches: 70, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
45 1 0.01
46 61 0.87
47 8 0.11
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (46 bp):
CCACTGCAACTCAGGGGTATAAGATTTGTGGCTTCTTCAATCTATC
Found at i:97685792 original size:26 final size:26
Alignment explanation
Indices: 97685762--97685813 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
97685752 ATAAAAAGAT
97685762 AGAAAATAATCAATTTGCAGCTTGAC
1 AGAAAATAATCAATTTGCAGCTTGAC
97685788 AGAAAATAATCAATTTGCAGCTTGAC
1 AGAAAATAATCAATTTGCAGCTTGAC
97685814 TCTCTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (26 bp):
AGAAAATAATCAATTTGCAGCTTGAC
Found at i:97686950 original size:3 final size:3
Alignment explanation
Indices: 97686942--97686970 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
97686932 ATACTATATA
97686942 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97686971 AAGTTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:97687159 original size:15 final size:14
Alignment explanation
Indices: 97687101--97687171 Score: 63
Period size: 15 Copynumber: 4.9 Consensus size: 14
97687091 ATATTAGTAT
*
97687101 ATAAATAGAAATAG
1 ATAAATAAAAATAG
*
97687115 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
97687129 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
97687144 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
97687159 ATAAATAATAATA
1 ATAAATAAAAATA
97687172 ATATTAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
13 2 0.04
14 20 0.43
15 22 0.48
16 2 0.04
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:97687164 original size:29 final size:29
Alignment explanation
Indices: 97687100--97687165 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
97687090 AATATTAGTA
*
97687100 TATAAATAGAAATAGAAATATAATAATAG
1 TATAAATAGAAATAGAAATATAAAAATAG
* *
97687129 TAGAAATATAAATAGATAA-ATAAAAATTAG
1 TATAAATAGAAATAGA-AATATAAAAA-TAG
97687159 -ATAAATA
1 TATAAATA
97687166 ATAATAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (29 bp):
TATAAATAGAAATAGAAATATAAAAATAG
Found at i:97687735 original size:5 final size:5
Alignment explanation
Indices: 97687727--97687761 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
97687717 TAATTAATTT
97687727 AATAA AATAA AAT-A AATAA AATGAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AAT-AA AATAA AATAA
97687762 TATCTTCCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:97687746 original size:14 final size:15
Alignment explanation
Indices: 97687727--97687757 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
97687717 TAATTAATTT
97687727 AATAAAAT-AAAATA
1 AATAAAATGAAAATA
97687741 AATAAAATGAAAATA
1 AATAAAATGAAAATA
97687756 AA
1 AA
97687758 ATAATATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (15 bp):
AATAAAATGAAAATA
Found at i:97690497 original size:871 final size:870
Alignment explanation
Indices: 97688765--97690508 Score: 3407
Period size: 871 Copynumber: 2.0 Consensus size: 870
97688755 GCCATTCCGA
97688765 ACCGCTTCTTTTATGGCGTCCTTTAATGTAAAATAGTCTCTCATCTTATGCCTATATCATCGTGT
1 ACCGCTTCTTTTATGGCGTCCTTTAATGTAAAATAGTCTCTCATCTTATGCCTATATCATCGTGT
97688830 AAGGCACATCGATTCCTGGATTTCGTCTTTCTACTAATACTCCACATCGGAGTTGGTTTAAGAAG
66 AAGGCACATCGATTCCTGGATTTCGTCTTTCTACTAATACTCCACATCGGAGTTGGTTTAAGAAG
97688895 GATGCCCAGGCTCTTTACTAGGTTAAGGATGTAGGCTCGCGTGGCATTCAGCGAGGTGTAAGCCT
131 GATGCCCAGGCTCTTTACTAGGTTAAGGATGTAGGCTCGCGTGGCATTCAGCGAGGTGTAAGCCT
* *
97688960 CAAACCTGCCCTGAGGAGGATTATGCCTTGTGTATTCTTACTGGGGCCTTTGCGGGTTTCTAAGT
196 CAAACCTGCCCTGAGGAGGATTATGCCTTGTGTATTCCTACTAGGGCCTTTGCGGGTTTCTAAGT
*
97689025 GTGTCACATTGGGCTAAGGTCTTGTGTAGTCTGTTGATCTTGACTCGTAGGGATTGATTGATGGG
261 GTGTCACATTGGGCTAAGGTCTTGTGTAGTCTGTCGATCTTGACTCGTAGGGATTGATTGATGGG
97689090 AGATTACCTACTATGCTATCCCGCTCTACTCTTGGGTTGTCGATCATCTCTTTGAAAATTGACCT
326 AGATTACCTACTATGCTATCCCGCTCTACTCTTGGGTTGTCGATCATCTCTTTGAAAATTGACCT
97689155 ACGACGTTCTCTTAATTTCTTTTGCCTTTAGGAACTTATAGGCTCACTCGTATAGGTCGGCTAGG
391 ACGACGTTCTCTTAATTTCTTTTGCCTTTAGGAACTTATAGGCTCACTCGTATAGGTCGGCTAGG
*
97689220 CTCTGCAATCTGTTGTTTGTGAATAAATACTGCATGTGGACATTCTACACTTCCATAATGAAGGC
456 CTCTGCAATCTATTGTTTGTGAATAAATACTGCATGTGGACATTCTACACTTCCATAATGAAGGC
97689285 GTGTATCGCCCACTAGTCTTCTAGGTTTTTTGTGTTGAATGTAGCCACATAGGACCTTTTTTGTA
521 GTGTATCGCCCACTAGTCTTCTAGGTTTTTTGTGTTGAATGTAGCCACATAGGACCTTTTTTGTA
97689350 GTCTTGAAGGGACTCACCCTCCCACTACTTTACTGACATTAACCTCATGAATGCGTTCATGATTG
586 GTCTTGAAGGGACTCACCCTCCCACTACTTTACTGACATTAACCTCATGAATGCGTTCATGATTG
97689415 CTCGATAGGCCTTGAACCTACCCAAGAACATTTGTCCCAGTTGCGAGAAATTATGAATAGATCCT
651 CTCGATAGGCCTTGAACCTACCCAAGAACATTTGTCCCAGTTGCGAGAAATTATGAATAGATCCT
97689480 TGTAGAAGGGAGAGATACCATTCCTTGGTGTTTACTTTCAGCGTTGTAGAGAAACCTTTCATTTG
716 TGTAGAAGGGAGAGATACCATTCCTTGGTGTTTACTTTCAGCGTTGTAGAGAAACCTTTCATTTG
97689545 ACTACGTCTGACGCTCCAAACTCATTCATATAGTAATTATCCTACATCAAGTGGGCTCATAGGTC
781 ACTACGTCTGACGCTCCAAACTCATTCATATAGTAATTATCCTACATCAAGTGGGCTCATAGGTC
97689610 CCTTCTTTCAAACATATCTTTAGGT
846 CCTTCTTTCAAACATATCTTTAGGT
*
97689635 ACCGCTTCTTTTATGGCGTCCTTTAATGTAAAATAGTCTTTCATCTTATGCCCTATATCATCGTG
1 ACCGCTTCTTTTATGGCGTCCTTTAATGTAAAATAGTCTCTCATCTTATG-CCTATATCATCGTG
*
97689700 TAAGGCACATCGGTTCCTGGATTTCGTCTTTCTACTAATACTCCACATCGGAGTTGGTTTAAGAA
65 TAAGGCACATCGATTCCTGGATTTCGTCTTTCTACTAATACTCCACATCGGAGTTGGTTTAAGAA
97689765 GGATGCCCAGGCTCTTTACTAGGTTAAGGATGTAGGCTCGCGTGGCATTCAGCGAGGTGTAAGCC
130 GGATGCCCAGGCTCTTTACTAGGTTAAGGATGTAGGCTCGCGTGGCATTCAGCGAGGTGTAAGCC
*
97689830 TCAAACCTGCCCTGGGGAGGATTATGCCTTGTGTATTCCTACTAGGGCCTTTGCGGGTTTCTAAG
195 TCAAACCTGCCCTGAGGAGGATTATGCCTTGTGTATTCCTACTAGGGCCTTTGCGGGTTTCTAAG
97689895 TGTGTCACATTGGGCTAAGGTCTTGTGTAGTCTGTCGATCTTGACTCGTAGGGATTGATTGATGG
260 TGTGTCACATTGGGCTAAGGTCTTGTGTAGTCTGTCGATCTTGACTCGTAGGGATTGATTGATGG
97689960 GAGATTACCTACTATGCTATCCCGCTCTACTCTTGGGTTGTCGATCATCTCTTTGAAAATTGACC
325 GAGATTACCTACTATGCTATCCCGCTCTACTCTTGGGTTGTCGATCATCTCTTTGAAAATTGACC
97690025 TACGACGTTCTCTTAATTTCTTTTGCCTTTAGGAACTTATAGGCTCACTCGTATAGGTCGGCTAG
390 TACGACGTTCTCTTAATTTCTTTTGCCTTTAGGAACTTATAGGCTCACTCGTATAGGTCGGCTAG
97690090 GCTCTGCAATCTATTGTTTGTGAATAAATACTGCATGTGGACATTCTACACTTCCATAATGAAGG
455 GCTCTGCAATCTATTGTTTGTGAATAAATACTGCATGTGGACATTCTACACTTCCATAATGAAGG
97690155 CGTGTATCGCCCACTAGTCTTCTAGGTTTTTTGTGTTGAATGTAGCCACATAGGACCTTTTTTGT
520 CGTGTATCGCCCACTAGTCTTCTAGGTTTTTTGTGTTGAATGTAGCCACATAGGACCTTTTTTGT
*
97690220 AGTCTTGAAGGGACTCACCCTCCCACTACTTTACTGACATTAACCTCATGAGTGCGTTCATGATT
585 AGTCTTGAAGGGACTCACCCTCCCACTACTTTACTGACATTAACCTCATGAATGCGTTCATGATT
97690285 GCTCGATAGGCCTTGAACCTACCCAAGAACATTTGTCCCAGTTGCGAGAAATTATGAATAGATCC
650 GCTCGATAGGCCTTGAACCTACCCAAGAACATTTGTCCCAGTTGCGAGAAATTATGAATAGATCC
97690350 TTGTAGAAGGGAGAGATACCATTCCTTGGTGTTTACTTTCAGCGTTGTAGAGAAACCTTTCATTT
715 TTGTAGAAGGGAGAGATACCATTCCTTGGTGTTTACTTTCAGCGTTGTAGAGAAACCTTTCATTT
97690415 GACTACGTCTGACGCTCCAAACTCATTCATATAGTAATTATCCTACATCAAGTGGGCTCATAGGT
780 GACTACGTCTGACGCTCCAAACTCATTCATATAGTAATTATCCTACATCAAGTGGGCTCATAGGT
97690480 CCCTTCTTTCAAACATATCTTTAGGT
845 CCCTTCTTTCAAACATATCTTTAGGT
97690506 ACC
1 ACC
97690509 TTAAAATTGC
Statistics
Matches: 865, Mismatches: 8, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
870 49 0.06
871 816 0.94
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (870 bp):
ACCGCTTCTTTTATGGCGTCCTTTAATGTAAAATAGTCTCTCATCTTATGCCTATATCATCGTGT
AAGGCACATCGATTCCTGGATTTCGTCTTTCTACTAATACTCCACATCGGAGTTGGTTTAAGAAG
GATGCCCAGGCTCTTTACTAGGTTAAGGATGTAGGCTCGCGTGGCATTCAGCGAGGTGTAAGCCT
CAAACCTGCCCTGAGGAGGATTATGCCTTGTGTATTCCTACTAGGGCCTTTGCGGGTTTCTAAGT
GTGTCACATTGGGCTAAGGTCTTGTGTAGTCTGTCGATCTTGACTCGTAGGGATTGATTGATGGG
AGATTACCTACTATGCTATCCCGCTCTACTCTTGGGTTGTCGATCATCTCTTTGAAAATTGACCT
ACGACGTTCTCTTAATTTCTTTTGCCTTTAGGAACTTATAGGCTCACTCGTATAGGTCGGCTAGG
CTCTGCAATCTATTGTTTGTGAATAAATACTGCATGTGGACATTCTACACTTCCATAATGAAGGC
GTGTATCGCCCACTAGTCTTCTAGGTTTTTTGTGTTGAATGTAGCCACATAGGACCTTTTTTGTA
GTCTTGAAGGGACTCACCCTCCCACTACTTTACTGACATTAACCTCATGAATGCGTTCATGATTG
CTCGATAGGCCTTGAACCTACCCAAGAACATTTGTCCCAGTTGCGAGAAATTATGAATAGATCCT
TGTAGAAGGGAGAGATACCATTCCTTGGTGTTTACTTTCAGCGTTGTAGAGAAACCTTTCATTTG
ACTACGTCTGACGCTCCAAACTCATTCATATAGTAATTATCCTACATCAAGTGGGCTCATAGGTC
CCTTCTTTCAAACATATCTTTAGGT
Found at i:97697933 original size:67 final size:69
Alignment explanation
Indices: 97697793--97697937 Score: 161
Period size: 67 Copynumber: 2.1 Consensus size: 69
97697783 TTAATCATTT
* * * *
97697793 TAATATTAAATTAATATAACACTTATCAAGATAAATATTAGATTAAATTTAATATTAAGATAATT
1 TAATATTAAATTAACAAAACACTTATCAAGATAAATATCAAATTAAATTTAATATTAAGATAATT
***
97697858 ACTT
66 AAAA
* * * *
97697862 TAATATTAAA-TAACAAAATAC-TATCAATATAAGTATCAAATTAAATTTAATATTAA-ATCTAT
1 TAATATTAAATTAACAAAACACTTATCAAGATAAATATCAAATTAAATTTAATATTAAGAT-AAT
97697924 TAAAA
65 TAAAA
97697929 TAATATTAA
1 TAATATTAA
97697938 TTTTGGAATA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
66 2 0.03
67 44 0.69
68 8 0.12
69 10 0.16
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (69 bp):
TAATATTAAATTAACAAAACACTTATCAAGATAAATATCAAATTAAATTTAATATTAAGATAATT
AAAA
Found at i:97705067 original size:65 final size:65
Alignment explanation
Indices: 97704932--97705152 Score: 254
Period size: 66 Copynumber: 3.3 Consensus size: 65
97704922 CTTAGTCATT
* *
97704932 TTACCATCCCTATTCAAATTTTCAAATCCGCCTATCTTCAAATTTTATAGTCATTTTT-CACCTA
1 TTACCATCCCTATTCAAATTTTCAAATCCGCCTATCTTCAAATTTTACATTC-TTTTTCCA-CTA
97704996 TC
64 TC
* *
97704998 TTACCATTCCTATTCAAATTTTCAAA-CCTG-CTATCTTTAAATTTTACATTCTTTTTCCATCTA
1 TTACCATCCCTATTCAAATTTTCAAATCC-GCCTATCTTCAAATTTTACATTCTTTTTCCA-CTA
97705061 TC
64 TC
* * *
97705063 TTACCATCCCTAATCAAATTTTGAAATCCGCCTATCTTCAAA-TTT-CATGGTCGTTTTCCACTT
1 TTACCATCCCTATTCAAATTTTCAAATCCGCCTATCTTCAAATTTTACAT--TCTTTTTCCAC-T
97705126 ATC
63 ATC
*
97705129 TTACCATTCCTATCTTCAAATTTT
1 TTACCATCCCTA--TTCAAATTTT
97705153 ATAATCGTTT
Statistics
Matches: 134, Mismatches: 12, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
64 8 0.06
65 55 0.41
66 62 0.46
68 9 0.07
ACGTcount: A:0.26, C:0.26, G:0.04, T:0.44
Consensus pattern (65 bp):
TTACCATCCCTATTCAAATTTTCAAATCCGCCTATCTTCAAATTTTACATTCTTTTTCCACTATC
Found at i:97705161 original size:44 final size:44
Alignment explanation
Indices: 97705093--97705185 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 44
97705083 TTGAAATCCG
** *
97705093 CCTATCTTCAAATTTCATGGTCGTTTTCCACTTATCTTACCATT
1 CCTATCTTCAAATTTCATAATCGTTTTCCACCTATCTTACCATT
* *
97705137 CCTATCTTCAAATTTTATAATCGTTTTCCACCTATCTTACCTTT
1 CCTATCTTCAAATTTCATAATCGTTTTCCACCTATCTTACCATT
97705181 CCTAT
1 CCTAT
97705186 TCTATATTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.22, C:0.28, G:0.04, T:0.46
Consensus pattern (44 bp):
CCTATCTTCAAATTTCATAATCGTTTTCCACCTATCTTACCATT
Found at i:97707082 original size:31 final size:31
Alignment explanation
Indices: 97707040--97707115 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
97707030 AAGGCCAATC
* * *
97707040 TGGGCGTGTGGGCCAACATGGGCAAGCCATA
1 TGGGCATGTGGGCCAACATAGGCAAGCCACA
*
97707071 CT-GGCATGTGGGTCAACATAGGCAAGCCACA
1 -TGGGCATGTGGGCCAACATAGGCAAGCCACA
97707102 TGGGCATGTGGGCC
1 TGGGCATGTGGGCC
97707116 TATTATACTG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 1 0.03
31 36 0.95
32 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.37, T:0.17
Consensus pattern (31 bp):
TGGGCATGTGGGCCAACATAGGCAAGCCACA
Found at i:97708420 original size:19 final size:20
Alignment explanation
Indices: 97708396--97708434 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
97708386 TTTTGGTACA
97708396 TTAAAAAAA-TAATTTTGAG
1 TTAAAAAAAGTAATTTTGAG
97708415 TTAAAAAAATGTAATTTTGA
1 TTAAAAAAA-GTAATTTTGA
97708435 TAAATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (20 bp):
TTAAAAAAAGTAATTTTGAG
Found at i:97708438 original size:19 final size:18
Alignment explanation
Indices: 97708397--97708443 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 18
97708387 TTTGGTACAT
97708397 TAAAAAAATAATTTTGAG
1 TAAAAAAATAATTTTGAG
97708415 TTAAAAAAATGTAATTTTGA-
1 -TAAAAAAA--TAATTTTGAG
97708435 TAAATAAAA
1 TAAA-AAAA
97708444 ATTGGTGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 12 0.48
20 4 0.16
21 9 0.36
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (18 bp):
TAAAAAAATAATTTTGAG
Found at i:97708443 original size:21 final size:21
Alignment explanation
Indices: 97708398--97708445 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
97708388 TTGGTACATT
*
97708398 AAAAAAA--TAATTTTGAGTT
1 AAAAAAATGTAATTTTGAGTA
97708417 AAAAAAATGTAATTTTGA-TA
1 AAAAAAATGTAATTTTGAGTA
97708437 AATAAAAAT
1 AA-AAAAAT
97708446 TGGTGTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 7 0.28
20 3 0.12
21 15 0.60
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
AAAAAAATGTAATTTTGAGTA
Found at i:97708865 original size:33 final size:29
Alignment explanation
Indices: 97708797--97708865 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 29
97708787 AAAATATTTA
**
97708797 TATTATATTATTTTAATATTTAATAATTT
1 TATTATATTATTTTAATATTTAATAATGG
*
97708826 TA-TATATTATTTTAATGTTTACATTAGAGTGG
1 TATTATATTATTTTAATATTTA-A-TA-A-TGG
97708858 TATTATAT
1 TATTATAT
97708866 ACTTAGTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
28 18 0.56
29 3 0.09
30 2 0.06
31 1 0.03
32 3 0.09
33 5 0.16
ACGTcount: A:0.35, C:0.01, G:0.07, T:0.57
Consensus pattern (29 bp):
TATTATATTATTTTAATATTTAATAATGG
Found at i:97709274 original size:21 final size:23
Alignment explanation
Indices: 97709222--97709275 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
97709212 AGAGTTTCAA
* *
97709222 ATCTTCAATTCAAATATTCGAAG
1 ATCTTCAAATAAAATATTCGAAG
97709245 ATCTTCAAATAAAATATTCGAAG
1 ATCTTCAAATAAAATATTCGAAG
97709268 -T-TTCAAAT
1 ATCTTCAAAT
97709276 CTTCAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 7 0.24
22 1 0.03
23 21 0.72
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (23 bp):
ATCTTCAAATAAAATATTCGAAG
Found at i:97711917 original size:34 final size:34
Alignment explanation
Indices: 97711874--97711943 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
97711864 CTCAGGTACA
97711874 ATAAATGATAGTTCTTTTTAATTTGATTGTTTAC
1 ATAAATGATAGTTCTTTTTAATTTGATTGTTTAC
97711908 ATAAATGATAGTTCTTTTTAATTTGATTGTTTAC
1 ATAAATGATAGTTCTTTTTAATTTGATTGTTTAC
97711942 AT
1 AT
97711944 TGTATGTGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.30, C:0.06, G:0.11, T:0.53
Consensus pattern (34 bp):
ATAAATGATAGTTCTTTTTAATTTGATTGTTTAC
Found at i:97712697 original size:13 final size:13
Alignment explanation
Indices: 97712681--97712705 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97712671 CTTTGATTAA
97712681 ATAGTTTGTTTGC
1 ATAGTTTGTTTGC
97712694 ATAGTTTGTTTG
1 ATAGTTTGTTTG
97712706 AATCCATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.24, T:0.56
Consensus pattern (13 bp):
ATAGTTTGTTTGC
Found at i:97713646 original size:174 final size:173
Alignment explanation
Indices: 97713357--97713695 Score: 635
Period size: 174 Copynumber: 2.0 Consensus size: 173
97713347 AATTAAGTTC
97713357 CTCTTAAAATGAGTTACATAAGACTTTTAATATAATTTTCTTAAAATTATCAAATGTAAAATAAC
1 CTCTTAAAATGAGTTACATAAGACTTTTAATATAATTTTCTTAAAATTATCAAATGTAAAATAAC
97713422 TTCTCCTACTACTTTAGCTCCCGTCTTCAATTCGTAACAAGAGCCTTTTATAATTCAAACTT-TT
66 TTCTCCTACTACTTTAGCTCCCGTCTTCAATTCGTAACAAGAGCCTTTTATAATTCAAACTTCTT
97713486 CGTTTCTCTGAACCTCTGTAAAGAAACGCACATATGATAAAATG
131 -GTTTCTCTGAACCTCTGTAAAGAAACGCACATATGATAAAATG
97713530 CTCTTAAAATGAGTTACATAAGACTTTTAATATAATTTTCTTAAAATTATCAAAATGTAAAATAA
1 CTCTTAAAATGAGTTACATAAGACTTTTAATATAATTTTCTTAAAATTATC-AAATGTAAAATAA
* *
97713595 CTTCTCCTACTACTTTAGCTCCCGTCTTCAATTCGTAACAAGAGCCTTTTATCATTCAGACTTCT
65 CTTCTCCTACTACTTTAGCTCCCGTCTTCAATTCGTAACAAGAGCCTTTTATAATTCAAACTTCT
97713660 TGTTTCTCTGAACCTCTGTAAAGAAACGCACATATG
130 TGTTTCTCTGAACCTCTGTAAAGAAACGCACATATG
97713696 GTTAATGACT
Statistics
Matches: 162, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
173 51 0.31
174 109 0.67
175 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (173 bp):
CTCTTAAAATGAGTTACATAAGACTTTTAATATAATTTTCTTAAAATTATCAAATGTAAAATAAC
TTCTCCTACTACTTTAGCTCCCGTCTTCAATTCGTAACAAGAGCCTTTTATAATTCAAACTTCTT
GTTTCTCTGAACCTCTGTAAAGAAACGCACATATGATAAAATG
Found at i:97714933 original size:18 final size:18
Alignment explanation
Indices: 97714877--97714938 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 18
97714867 GCTCGTAGTG
* *
97714877 TTGGTGAGCTAGCA-ATC
1 TTGGTGAGCTCGCACATT
*
97714894 TTGGTAAG-TGCGCACA-T
1 TTGGTGAGCT-CGCACATT
97714911 TTGGTGAGCTCGCACATT
1 TTGGTGAGCTCGCACATT
97714929 TTGGTGAGCT
1 TTGGTGAGCT
97714939 TACAGTTCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
16 1 0.03
17 23 0.62
18 13 0.35
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.32
Consensus pattern (18 bp):
TTGGTGAGCTCGCACATT
Found at i:97718163 original size:38 final size:38
Alignment explanation
Indices: 97718120--97718260 Score: 137
Period size: 38 Copynumber: 3.7 Consensus size: 38
97718110 GGCTTAAAGA
* *
97718120 CCCGCAGGCTATATGCTGGAATTATATCCGAGTTAAAT
1 CCCGCAGGCTATGTGCTGGTATTATATCCGAGTTAAAT
*
97718158 CCCGCAGGCT-TCGTGCTGGTATTATAT-CTAGATTAAAT
1 CCCGCAGGCTAT-GTGCTGGTATTATATCCGAG-TTAAAT
*
97718196 CCCGCAGGCCTA-GTGCTGGTATTATATCTGAGTTTAAAGT
1 CCCGCAGG-CTATGTGCTGGTATTATATCCGAG-TTAAA-T
* * *
97718236 CTCGTAGGCT-TCGTGCTGGTGTTAT
1 CCCGCAGGCTAT-GTGCTGGTATTAT
97718261 GTTCAGGTTT
Statistics
Matches: 86, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
37 4 0.05
38 52 0.60
39 11 0.13
40 19 0.22
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (38 bp):
CCCGCAGGCTATGTGCTGGTATTATATCCGAGTTAAAT
Found at i:97719871 original size:43 final size:43
Alignment explanation
Indices: 97719808--97719896 Score: 142
Period size: 43 Copynumber: 2.1 Consensus size: 43
97719798 TGAAACTCGA
**
97719808 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGG
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCGG
* *
97719851 TGATGTGTATTTGGGTCTTCGTGCCTAGCAGGCTTAATGCCGG
1 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCGG
97719894 TGA
1 TGA
97719897 GTCGAGCAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.12, C:0.20, G:0.34, T:0.34
Consensus pattern (43 bp):
TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCGG
Found at i:97728760 original size:16 final size:16
Alignment explanation
Indices: 97728739--97728787 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
97728729 TGAATTCAAG
*
97728739 ATTTGAAACTTCGAAT
1 ATTTGAAACTTTGAAT
*
97728755 ATTTG--A-TTTGAAG
1 ATTTGAAACTTTGAAT
97728768 ATTTGAAACTTTGAAT
1 ATTTGAAACTTTGAAT
97728784 ATTT
1 ATTT
97728788 TGGTATGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
13 10 0.37
14 1 0.04
15 1 0.04
16 15 0.56
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (16 bp):
ATTTGAAACTTTGAAT
Found at i:97728768 original size:29 final size:29
Alignment explanation
Indices: 97728726--97728787 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
97728716 CGAATATAAA
97728726 ATTTGAATTCAAGATTTGAAACTTCGAAT
1 ATTTGAATTCAAGATTTGAAACTTCGAAT
* * *
97728755 ATTTGATTTGAAGATTTGAAACTTTGAAT
1 ATTTGAATTCAAGATTTGAAACTTCGAAT
97728784 ATTT
1 ATTT
97728788 TGGTATGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (29 bp):
ATTTGAATTCAAGATTTGAAACTTCGAAT
Found at i:97733364 original size:59 final size:58
Alignment explanation
Indices: 97733184--97733467 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
97733174 ATGATAAATT
* ** * *
97733184 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
97733243 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
97733304 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
97733363 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
97733425 T
58 C
*
97733426 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
97733468 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:97733391 original size:120 final size:122
Alignment explanation
Indices: 97733177--97733467 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
97733167 TAGTATGATG
* **
97733177 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
97733242 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
97733298 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
97733361 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
97733419 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
97733468 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:97733446 original size:18 final size:19
Alignment explanation
Indices: 97733411--97733447 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
97733401 ATTATTAAGA
97733411 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
97733430 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
97733448 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:97733704 original size:16 final size:16
Alignment explanation
Indices: 97733683--97733751 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
97733673 AATTAGCTAT
97733683 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
97733699 TACACCTCTAATCCTAA
1 TACACCTCTAATCC-AA
*
97733716 TACACCTCTAATCAAA
1 TACACCTCTAATCCAA
97733732 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
97733748 TACA
1 TACA
97733752 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:97733725 original size:33 final size:32
Alignment explanation
Indices: 97733683--97733751 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
97733673 AATTAGCTAT
*
97733683 TACACCTCTAATCCAATACACCTCTAATCCTAA
1 TACACCTCTAATCAAATACACCTCTAATCC-AA
97733716 TACACCTCTAATCAAATACACCTCTAATCCAA
1 TACACCTCTAATCAAATACACCTCTAATCCAA
97733748 TACA
1 TACA
97733752 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCAAATACACCTCTAATCCAA
Found at i:97737968 original size:53 final size:53
Alignment explanation
Indices: 97737901--97738024 Score: 131
Period size: 53 Copynumber: 2.3 Consensus size: 53
97737891 TTTTGTGAGC
* * ** *
97737901 CTCAGTCTGCGTGCTCCTCGAAAGTATGGGCTTTTGTGAGTTTTGTGATAAGT
1 CTCACTCTGCGTGCTCCTCAAAAACATGGGCTTTTGTGAGATTTGTGATAAGT
* ** * * *
97737954 TTCACTCTGCGTGCTATTTAAAAACATGGGTTTTTGTGAGATTTGTGATATGT
1 CTCACTCTGCGTGCTCCTCAAAAACATGGGCTTTTGTGAGATTTGTGATAAGT
* *
97738007 CTCATTCTGCATGCTCCT
1 CTCACTCTGCGTGCTCCT
97738025 TATGAGCTAG
Statistics
Matches: 55, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.40
Consensus pattern (53 bp):
CTCACTCTGCGTGCTCCTCAAAAACATGGGCTTTTGTGAGATTTGTGATAAGT
Found at i:97751683 original size:46 final size:47
Alignment explanation
Indices: 97751631--97751805 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 47
97751621 ATTTGGGCAT
97751631 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA-C
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAGC
* *
97751677 CCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC-A-GC
*
97751722 ATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-AGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAGC
* * * * *
97751770 TCGAGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97751806 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 7 0.06
43 5 0.05
45 2 0.02
46 57 0.52
47 24 0.22
48 3 0.03
49 1 0.01
50 4 0.04
51 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAGC
Found at i:97751785 original size:93 final size:93
Alignment explanation
Indices: 97751626--97751796 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
97751616 AGGATATTTG
*
97751626 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
97751691 TTGAGTCCGAGTTTGTGAGATGTAACTA
66 TTGAGTCCGAGTTTGTGAGATGTAACTA
* * *
97751719 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-AGCTCGAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA-CCCGAACTCATTGA
*
97751783 GTTGAGTCTGAGTT
65 GTTGAGTCCGAGTT
97751797 CGCTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTTGTGAGATGTAACTA
Found at i:97752529 original size:26 final size:26
Alignment explanation
Indices: 97752500--97752570 Score: 142
Period size: 26 Copynumber: 2.7 Consensus size: 26
97752490 AATCACAAAA
97752500 AATAGTAGAAATAGAATTAAATGATT
1 AATAGTAGAAATAGAATTAAATGATT
97752526 AATAGTAGAAATAGAATTAAATGATT
1 AATAGTAGAAATAGAATTAAATGATT
97752552 AATAGTAGAAATAGAATTA
1 AATAGTAGAAATAGAATTA
97752571 TGAGTCTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (26 bp):
AATAGTAGAAATAGAATTAAATGATT
Found at i:97756226 original size:17 final size:18
Alignment explanation
Indices: 97756192--97756224 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
97756182 ACTTGTTTAA
97756192 TTAATTTAAATTAATTTC
1 TTAATTTAAATTAATTTC
97756210 TTAA-TTAAA-TAATTT
1 TTAATTTAAATTAATTT
97756225 TCACAATCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (18 bp):
TTAATTTAAATTAATTTC
Found at i:97757168 original size:20 final size:20
Alignment explanation
Indices: 97757145--97757188 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
97757135 TTTTTTTATA
97757145 ATTTTAAATT-ATTTTATTTT
1 ATTTT-AATTAATTTTATTTT
* *
97757165 ATTTTAGTTAATTTTCTTTT
1 ATTTTAATTAATTTTATTTT
97757185 ATTT
1 ATTT
97757189 CTTCGCTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTTAATTAATTTTATTTT
Found at i:97757687 original size:30 final size:30
Alignment explanation
Indices: 97757653--97757714 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
97757643 CTTAACAAGT
97757653 AAATGTCTCTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAACAAAATTAAC
*
97757683 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAACAAAATTAAC
97757713 AA
1 AA
97757715 TAAATTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.27
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAACAAAATTAAC
Found at i:97768734 original size:5 final size:5
Alignment explanation
Indices: 97768724--97768767 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
97768714 TTAAAAATAA
97768724 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTAT
97768768 CTTAATTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:97769108 original size:18 final size:18
Alignment explanation
Indices: 97769085--97769133 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
97769075 ATCTTATATA
**
97769085 TTTTAAATATTTTTTATT
1 TTTTAAATATTTTAAATT
97769103 TTTTAAAT-TTTTAAATT
1 TTTTAAATATTTTAAATT
* *
97769120 TTTTTAATAATTTA
1 TTTTAAATATTTTA
97769134 TTTGATCGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTAAATATTTTAAATT
Found at i:97777108 original size:43 final size:43
Alignment explanation
Indices: 97776962--97777120 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
97776952 TATGTGTTAT
* ** * *
97776962 CGTGTAAGAGCACGTCTAAGACGTTGGCATCGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATT-TGA-TTA
* * * * *
97777006 CGTGTAAGACCATGTCTAGGACATTGGCATCG-TATATCATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
*
97777048 CGTGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
*
97777091 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
97777121 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 30 0.32
43 35 0.37
44 30 0.32
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:97790507 original size:47 final size:46
Alignment explanation
Indices: 97790454--97790620 Score: 161
Period size: 44 Copynumber: 3.7 Consensus size: 46
97790444 TCATATAAGA
*
97790454 ATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATT
1 ATATTTATTATTAATAATTTTATGAAATTATATAT-ATTATTAAATT
* * *
97790501 ATATTTAATATTAATTA-TTT-T-AAATTTTATATATTCATATAAGA--
1 ATATTTATTATTAATAATTTTATGAAATTATATATATT-AT-TAA-ATT
* *
97790545 ATATTTATTATCAATAATTTTATGAAATTATATATTATTACTAAATT
1 ATATTTATTATTAATAATTTTATGAAATTATATA-TATTATTAAATT
* *
97790592 ATATTTA--A-TAATAATTATATTAAATTATA
1 ATATTTATTATTAATAATTTTATGAAATTATA
97790621 CAAATTCATA
Statistics
Matches: 99, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
43 3 0.03
44 44 0.44
45 9 0.09
46 8 0.08
47 31 0.31
48 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (46 bp):
ATATTTATTATTAATAATTTTATGAAATTATATATATTATTAAATT
Found at i:97790516 original size:16 final size:16
Alignment explanation
Indices: 97790492--97790612 Score: 53
Period size: 16 Copynumber: 7.8 Consensus size: 16
97790482 TATATATCAT
97790492 TATTAAATTATATTTAA
1 TATT-AATTATATTTAA
97790509 TATTAATTAT-TTTAA
1 TATTAATTATATTTAA
*
97790524 -ATT--TTATATATTCA
1 TATTAATTATAT-TTAA
** *
97790538 TA-TAAGAATATTTAT
1 TATTAATTATATTTAA
*
97790553 TATCAA-TA-ATTT--
1 TATTAATTATATTTAA
* *
97790565 TATGAAATTATATATTAT
1 TAT-TAATTATAT-TTAA
*
97790583 TACTAAATTATATTTAA
1 TA-TTAATTATATTTAA
*
97790600 TAATAATTATATT
1 TATTAATTATATT
97790613 AAATTATACA
Statistics
Matches: 80, Mismatches: 11, Indels: 27
0.68 0.09 0.23
Matches are distributed among these distances:
12 7 0.09
13 3 0.04
14 13 0.16
15 13 0.16
16 23 0.29
17 9 0.11
18 11 0.14
19 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (16 bp):
TATTAATTATATTTAA
Found at i:97790549 original size:44 final size:44
Alignment explanation
Indices: 97790432--97790668 Score: 144
Period size: 47 Copynumber: 5.2 Consensus size: 44
97790422 TTATATTATG
* * **
97790432 ATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATGA
1 ATTTTA-TATATTCATATAAGAATATTTAATATTAATTATTTTA--A
*
97790479 A-ATTATATA-TCATTATTAA-ATTATATTTAATATTAATTATTTTAA
1 ATTTTATATATTCA-TA-TAAGA--ATATTTAATATTAATTATTTTAA
* * *
97790524 ATTTTATATATTCATATAAGAATATTTATTATCAATAATTTTATGA
1 ATTTTATATATTCATATAAGAATATTTAATATTAATTATTTTA--A
* * *
97790570 A-ATTATATATT-ATTACTAA-ATTATATTTAATAATAATTATATTAA
1 ATTTTATATATTCA-TA-TAAGA--ATATTTAATATTAATTATTTTAA
* * * * *
97790615 ATTATACAAATTCATATAAGAAAATTTATTAGTAATAATTATTTTAA
1 ATTTTATATATTCATATAAGAATATTTA--A-TATTAATTATTTTAA
97790662 ATTTTAT
1 ATTTTAT
97790669 TAAATCATAT
Statistics
Matches: 148, Mismatches: 23, Indels: 38
0.71 0.11 0.18
Matches are distributed among these distances:
44 29 0.20
45 28 0.19
46 31 0.21
47 60 0.41
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (44 bp):
ATTTTATATATTCATATAAGAATATTTAATATTAATTATTTTAA
Found at i:97790549 original size:91 final size:91
Alignment explanation
Indices: 97790422--97790654 Score: 340
Period size: 91 Copynumber: 2.5 Consensus size: 91
97790412 AATTCTCAAG
* *
97790422 TTATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATAT
1 TTATATTA-AATTTTA-TAAATTCATATAAGAATATTTATTATTAATAATTTTATGAAATTATAT
* *
97790487 ATCATTATTAAATTATATTTAATATTAA
64 ATCATTACTAAATTATATTTAATAATAA
* * *
97790515 TTATTTTAAATTTTATATATTCATATAAGAATATTTATTATCAATAATTTTATGAAATTATATAT
1 TTATATTAAATTTTATAAATTCATATAAGAATATTTATTATTAATAATTTTATGAAATTATATAT
*
97790580 TATTACTAAATTATATTTAATAATAA
66 CATTACTAAATTATATTTAATAATAA
* * * *
97790606 TTATATTAAATTATACAAATTCATATAAGAAAATTTATTAGTAATAATT
1 TTATATTAAATTTTATAAATTCATATAAGAATATTTATTATTAATAATT
97790655 ATTTTAAATT
Statistics
Matches: 125, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
91 112 0.90
92 6 0.05
93 7 0.06
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (91 bp):
TTATATTAAATTTTATAAATTCATATAAGAATATTTATTATTAATAATTTTATGAAATTATATAT
CATTACTAAATTATATTTAATAATAA
Found at i:97790937 original size:120 final size:120
Alignment explanation
Indices: 97790661--97791070 Score: 736
Period size: 120 Copynumber: 3.4 Consensus size: 120
97790651 AATTATTTTA
* *
97790661 AATTTTATTAAATCATATATTTTAATTAAAATATAGTTAATAATAATTATTTCAAATTATATTAT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
97790726 ATAGTATCATATATTATGATTTTAAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTT-AGTAAATTCATATAAGAATATTGATTATTAAG
97790782 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
97790847 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
97790902 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTT
*
97790966 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
*
97791022 AATTTTATTAAATTATATAATTTT-ATTAAAAT-TATTTAATAATAATTAT
1 AATTTTATTAAATCATAT-ATTTTAATTAAAATATATTTAATAATAATTAT
97791071 GTTAAAATAT
Statistics
Matches: 283, Mismatches: 4, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
119 17 0.06
120 173 0.61
121 93 0.33
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:97791039 original size:59 final size:59
Alignment explanation
Indices: 97790735--97791039 Score: 197
Period size: 57 Copynumber: 5.1 Consensus size: 59
97790725 TATAGTATCA
97790735 TATATTATGATTTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGA-TTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
* * * * * * *
97790795 CATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATT-ATT-TCAAATTATATTTTA-TAGTA
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAAT-ATTGATTAT-TAA-GA-ATTTTATTA-AA
97790853 T
59 T
*
97790854 CATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
* * * * * * *
97790915 CATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATT-ATGT-TAAATTATATTTTA-TAGTA
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAAT-ATTGAT-TATTAA-GA-ATTTTATTA-AA
97790973 T
59 T
*
97790974 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
97791035 TATAT
1 TATAT
97791040 AATTTTATTA
Statistics
Matches: 182, Mismatches: 31, Indels: 65
0.65 0.11 0.23
Matches are distributed among these distances:
56 12 0.07
57 34 0.19
58 18 0.10
59 27 0.15
60 3 0.02
61 22 0.12
62 21 0.12
63 34 0.19
64 11 0.06
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (59 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
Found at i:97791045 original size:18 final size:19
Alignment explanation
Indices: 97791022--97791061 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
97791012 GATTATTAAG
97791022 AATTTTATT-AAATTATAT
1 AATTTTATTAAAATTATAT
*
97791040 AATTTTATTAAAATTATTT
1 AATTTTATTAAAATTATAT
97791059 AAT
1 AAT
97791062 AATAATTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AATTTTATTAAAATTATAT
Found at i:97791206 original size:18 final size:17
Alignment explanation
Indices: 97791178--97791212 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
97791168 ATTATTAAGA
*
97791178 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
97791195 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
97791213 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:97791240 original size:156 final size:156
Alignment explanation
Indices: 97791013--97791325 Score: 558
Period size: 156 Copynumber: 2.0 Consensus size: 156
97791003 AAGAATATTG
97791013 ATTATTAAGAATTTTATTAAATTATATAATTTTATTAAAATTATTTAATAATAATTATGTTAAAA
1 ATTATTAAGAATTTTATTAAATTATATAATTTTATTAAAATTATTTAATAATAATTATGTTAAAA
* *
97791078 TATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTT-AATAACAATAACAATAA
66 TATGATTAAATGATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAA
97791142 TCATTTACCAAAACAAATTTATGCTA
131 TCATTTACCAAAACAAATTTATGCTA
*
97791168 ATTATTAAGAATTTTATTAAATTATAT-ATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 ATTATTAAGAATTTTATTAAATTATATAATTTT-ATTAAAAT-TATTTAATAATAATTATGTTAA
97791232 AATATGATTAAATGATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
64 AATATGATTAAATGATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
*
97791297 AATCATTTACCAAAACAAATTTCTGCTA
129 AATCATTTACCAAAACAAATTTATGCTA
97791325 A
1 A
97791326 GGGTATTCTA
Statistics
Matches: 151, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
154 5 0.03
155 35 0.23
156 68 0.45
157 43 0.28
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (156 bp):
ATTATTAAGAATTTTATTAAATTATATAATTTTATTAAAATTATTTAATAATAATTATGTTAAAA
TATGATTAAATGATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAA
TCATTTACCAAAACAAATTTATGCTA
Found at i:97791466 original size:16 final size:16
Alignment explanation
Indices: 97791445--97791483 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
97791435 TTGATTTGCT
*
97791445 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
97791461 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
97791477 ATTACAC
1 ATTACAC
97791484 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:97791484 original size:16 final size:16
Alignment explanation
Indices: 97791457--97791498 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
97791447 TACACAGCTT
97791457 TTCCATTACACCTCTA
1 TTCCATTACACCTCTA
97791473 TTCCATTACACCTCTA
1 TTCCATTACACCTCTA
* *
97791489 ATCCAATACA
1 TTCCATTACA
97791499 GCGAACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
TTCCATTACACCTCTA
Found at i:97793980 original size:22 final size:21
Alignment explanation
Indices: 97793928--97793983 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
97793918 ACTTCTTTAA
* *
97793928 AATAGTAAATTTTTAATTTAT
1 AATAGTAAAATTTTAAATTAT
97793949 AATTTA-TAAAATTTTAAATTAGT
1 AA--TAGTAAAATTTTAAATTA-T
97793972 AATAGTAAAATT
1 AATAGTAAAATT
97793984 GTATTTTGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
21 4 0.14
22 20 0.69
23 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
AATAGTAAAATTTTAAATTAT
Found at i:97794019 original size:30 final size:30
Alignment explanation
Indices: 97793978--97794042 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
97793968 TAGTAATAGT
*
97793978 AAAATTGTATTTTGACCTTTT-AAAATAATA
1 AAAATTGTA-TTTAACCTTTTAAAAATAATA
* * *
97794008 AAAATTTTATTTAATCTTTTAAAAATTATA
1 AAAATTGTATTTAACCTTTTAAAAATAATA
97794038 AAAAT
1 AAAAT
97794043 ATAGACTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (30 bp):
AAAATTGTATTTAACCTTTTAAAAATAATA
Found at i:97794554 original size:43 final size:44
Alignment explanation
Indices: 97794507--97794633 Score: 109
Period size: 43 Copynumber: 2.9 Consensus size: 44
97794497 CTAATAATCA
**
97794507 GAAGAAAGTATACTGACACGCATAGTGCATCATCGGATAAA-TT
1 GAAGAAAGTATACTGACACGCATAGTGCATCATCGGATAAAGCC
* ** ** *
97794550 GAAGAATGTATACTGGTATACATAGTGCATCA-CTGA-ACAAGCC
1 GAAGAAAGTATACTGACACGCATAGTGCATCATCGGATA-AAGCC
* * *
97794593 GAAGCAATTATA-TTAGCACGCATAGTGCATCATCGGATAAA
1 GAAGAAAGTATACTGA-CACGCATAGTGCATCATCGGATAAA
97794634 CAGAAACAAT
Statistics
Matches: 62, Mismatches: 17, Indels: 9
0.70 0.19 0.10
Matches are distributed among these distances:
41 1 0.02
42 6 0.10
43 49 0.79
44 5 0.08
45 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (44 bp):
GAAGAAAGTATACTGACACGCATAGTGCATCATCGGATAAAGCC
Found at i:97796331 original size:28 final size:29
Alignment explanation
Indices: 97796276--97796334 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
97796266 AATATATATT
* **
97796276 TTTTTATTTTTAATTATATTTACATTTTA
1 TTTTTAATTTTAATTATAACTACATTTTA
*
97796305 TTTTTAATTTTAA-TATAACTACTTTTTA
1 TTTTTAATTTTAATTATAACTACATTTTA
97796333 TT
1 TT
97796335 ATATTTTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (29 bp):
TTTTTAATTTTAATTATAACTACATTTTA
Found at i:97796409 original size:12 final size:12
Alignment explanation
Indices: 97796392--97796417 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97796382 TATTTGTTTC
97796392 TTGTTTTAATAT
1 TTGTTTTAATAT
97796404 TTGTTTTAATAT
1 TTGTTTTAATAT
97796416 TT
1 TT
97796418 TTAAATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:97796430 original size:24 final size:25
Alignment explanation
Indices: 97796401--97796460 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
97796391 CTTGTTTTAA
*
97796401 TATTTGTTTTAATAT-TTTTAAATG
1 TATTTGATTTAATATATTTTAAATG
*
97796425 TATTTGATTTATTATATTTTAAAT-
1 TATTTGATTTAATATATTTTAAATG
*
97796449 T-TTTTATTTAAT
1 TATTTGATTTAAT
97796461 GAAATAAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
23 9 0.29
24 14 0.45
25 8 0.26
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (25 bp):
TATTTGATTTAATATATTTTAAATG
Found at i:97798003 original size:41 final size:41
Alignment explanation
Indices: 97797946--97798028 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
97797936 AGATTTGCAC
97797946 TTGCAATGATTTTGCAAAAGTGCATCAATTCATACATACTT
1 TTGCAATGATTTTGCAAAAGTGCATCAATTCATACATACTT
*
97797987 TTGCAATGATTTTGCAAAAGTGCATCAATTCATACGTACTT
1 TTGCAATGATTTTGCAAAAGTGCATCAATTCATACATACTT
97798028 T
1 T
97798029 AATACAGTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (41 bp):
TTGCAATGATTTTGCAAAAGTGCATCAATTCATACATACTT
Found at i:97803414 original size:12 final size:12
Alignment explanation
Indices: 97803397--97803423 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97803387 AAAATAGGGC
97803397 TTTAGCGGCGTT
1 TTTAGCGGCGTT
97803409 TTTAGCGGCGTT
1 TTTAGCGGCGTT
97803421 TTT
1 TTT
97803424 TGATAAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.30, T:0.48
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:97803501 original size:40 final size:41
Alignment explanation
Indices: 97803446--97803611 Score: 189
Period size: 40 Copynumber: 4.1 Consensus size: 41
97803436 GCAAAAATTG
* ** *
97803446 TAAAACACATAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTAGTAAAAACGCCGC
* *
97803487 TAAAAACAGAGCAATAGGGGCG-TTTTAGTAAAAATGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTAGTAAAAACGCCGC
* * *
97803527 AAAAAACAGAGCATTAGCAGCGCTTTTA-TAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTAGTAAAAACGCCGC
*
97803567 TAAAAACCAGAGCATTAGC-GCGCTTTT-GTAAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGTAAAAACGCCGC
97803607 TAAAA
1 TAAAA
97803612 GTCATATAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
40 88 0.80
41 22 0.20
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (41 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTAGTAAAAACGCCGC
Found at i:97803783 original size:7 final size:7
Alignment explanation
Indices: 97803768--97803821 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
97803758 TTAATTATCA
*
97803768 TTATAGT
1 TTATGGT
97803775 TTATGGT
1 TTATGGT
97803782 TTATGGT
1 TTATGGT
* *
97803789 TTAAGAT
1 TTATGGT
*
97803796 ATATGGT
1 TTATGGT
*
97803803 TTAGGGT
1 TTATGGT
*
97803810 TTAAGGT
1 TTATGGT
97803817 TTATG
1 TTATG
97803822 AGTTAACTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:97803800 original size:21 final size:21
Alignment explanation
Indices: 97803776--97803860 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
97803766 CATTATAGTT
97803776 TATGGTTTATGGTTTAAGATA
1 TATGGTTTATGGTTTAAGATA
* * *
97803797 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTATGGTTTAAGATA
*
97803818 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TATGGTTTAAGATA
*
97803843 TATGGTTTAAGGTTTAAG
1 TATGGTTTATGGTTTAAG
97803861 GTTTAGGAGT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (21 bp):
TATGGTTTATGGTTTAAGATA
Found at i:97803839 original size:46 final size:46
Alignment explanation
Indices: 97803787--97803876 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
97803777 ATGGTTTATG
* *
97803787 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAAGGTTTAAGGTTTAGGAGTTAACTATA
97803833 GTTTAAGATATATGGTTTAAGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATGGTTTAAGGTTTAAGGTTTAGGAGTTAACTA
97803877 GTATTTGAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.42
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAAGGTTTAAGGTTTAGGAGTTAACTATA
Done.